Query 045884
Match_columns 144
No_of_seqs 183 out of 1420
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02290 cytokinin trans-hydro 99.7 6.4E-16 1.4E-20 122.8 14.7 129 16-144 16-148 (516)
2 KOG0156 Cytochrome P450 CYP2 s 99.5 4E-13 8.6E-18 106.3 9.8 84 43-143 27-115 (489)
3 KOG0157 Cytochrome P450 CYP4/C 99.4 5.6E-13 1.2E-17 105.9 8.8 90 40-144 33-125 (497)
4 PTZ00404 cytochrome P450; Prov 99.4 1.6E-12 3.5E-17 102.6 8.8 89 38-144 25-116 (482)
5 PLN02196 abscisic acid 8'-hydr 99.3 5.9E-12 1.3E-16 99.2 9.4 118 1-143 1-121 (463)
6 PLN02687 flavonoid 3'-monooxyg 99.3 2E-11 4.4E-16 97.3 8.6 67 43-127 35-102 (517)
7 PLN02169 fatty acid (omega-1)- 99.3 6.8E-11 1.5E-15 94.1 10.8 92 38-144 27-123 (500)
8 KOG0158 Cytochrome P450 CYP3/C 99.2 1.1E-10 2.4E-15 92.2 11.6 73 38-126 27-100 (499)
9 PLN00168 Cytochrome P450; Prov 99.2 2.8E-11 6.1E-16 96.6 8.4 70 42-126 35-105 (519)
10 PLN03112 cytochrome P450 famil 99.2 6.4E-11 1.4E-15 94.3 9.6 68 43-128 33-101 (514)
11 PLN02183 ferulate 5-hydroxylas 99.2 5.8E-11 1.2E-15 94.7 9.3 67 42-126 36-103 (516)
12 PLN02774 brassinosteroid-6-oxi 99.2 3.1E-11 6.7E-16 95.0 7.0 83 43-143 31-116 (463)
13 PLN02971 tryptophan N-hydroxyl 99.2 1.5E-10 3.3E-15 92.9 10.9 81 43-139 58-140 (543)
14 PLN03234 cytochrome P450 83B1; 99.2 1.1E-10 2.4E-15 92.6 9.3 68 43-127 29-97 (499)
15 PLN02500 cytochrome P450 90B1 99.1 1.7E-10 3.6E-15 91.5 7.7 88 43-143 39-128 (490)
16 PLN02394 trans-cinnamate 4-mon 99.1 5.6E-10 1.2E-14 88.7 10.1 67 43-126 31-98 (503)
17 PLN02966 cytochrome P450 83A1 99.0 6.2E-10 1.3E-14 88.5 7.3 67 43-126 30-97 (502)
18 PLN00110 flavonoid 3',5'-hydro 99.0 1E-09 2.2E-14 87.4 8.0 69 41-127 30-99 (504)
19 PLN02655 ent-kaurene oxidase 99.0 4.9E-10 1.1E-14 88.4 5.9 67 44-127 1-68 (466)
20 PLN03195 fatty acid omega-hydr 99.0 1.1E-09 2.4E-14 87.3 8.0 84 41-143 29-118 (516)
21 PLN02987 Cytochrome P450, fami 99.0 8.3E-10 1.8E-14 87.4 5.6 88 44-144 32-121 (472)
22 PLN02302 ent-kaurenoic acid ox 99.0 7.3E-09 1.6E-13 81.9 10.2 71 44-127 44-116 (490)
23 PLN03141 3-epi-6-deoxocathaste 98.9 1.6E-09 3.4E-14 85.2 6.1 87 44-143 9-97 (452)
24 PF00067 p450: Cytochrome P450 98.9 2.1E-09 4.6E-14 82.7 5.1 84 44-143 1-90 (463)
25 PLN02738 carotene beta-ring hy 98.9 6.5E-09 1.4E-13 85.0 8.0 96 32-144 105-218 (633)
26 PLN03018 homomethionine N-hydr 98.8 1.4E-08 3.1E-13 81.6 7.3 69 43-127 41-111 (534)
27 PLN02936 epsilon-ring hydroxyl 98.6 1.1E-07 2.4E-12 75.6 7.0 88 44-144 14-103 (489)
28 KOG0684 Cytochrome P450 [Secon 98.0 1.6E-05 3.6E-10 62.0 6.1 74 50-141 40-116 (486)
29 PLN02426 cytochrome P450, fami 98.0 4E-05 8.6E-10 61.3 8.4 58 85-144 66-127 (502)
30 PLN02648 allene oxide synthase 97.8 2.2E-05 4.7E-10 62.6 4.1 64 43-119 18-89 (480)
31 KOG0159 Cytochrome P450 CYP11/ 97.4 0.00034 7.3E-09 55.7 5.2 62 44-119 52-114 (519)
32 TIGR00847 ccoS cytochrome oxid 77.6 7 0.00015 21.4 3.9 14 1-14 1-14 (51)
33 PF07219 HemY_N: HemY protein 74.4 11 0.00023 23.8 4.8 20 16-35 28-47 (108)
34 PF15050 SCIMP: SCIMP protein 73.8 8.3 0.00018 25.1 4.0 27 3-29 7-35 (133)
35 PF00558 Vpu: Vpu protein; In 72.7 6.7 0.00014 23.7 3.2 17 15-31 16-32 (81)
36 cd00928 Cyt_c_Oxidase_VIIa Cyt 61.4 21 0.00047 19.8 3.6 24 1-24 27-50 (55)
37 PF13625 Helicase_C_3: Helicas 61.1 19 0.00041 23.4 4.0 38 81-120 76-113 (129)
38 PF15176 LRR19-TM: Leucine-ric 58.1 30 0.00064 21.8 4.2 9 24-32 42-50 (102)
39 PF06679 DUF1180: Protein of u 53.5 12 0.00026 25.8 2.1 7 38-44 125-131 (163)
40 PF05399 EVI2A: Ectropic viral 53.3 45 0.00097 24.0 4.9 22 2-23 129-150 (227)
41 PF01102 Glycophorin_A: Glycop 51.3 29 0.00064 22.7 3.6 8 6-13 67-74 (122)
42 COG3115 ZipA Cell division pro 51.0 19 0.0004 27.3 2.9 14 1-14 2-15 (324)
43 PF15050 SCIMP: SCIMP protein 49.9 40 0.00088 22.0 3.9 23 5-27 14-36 (133)
44 PF13974 YebO: YebO-like prote 49.4 16 0.00034 22.0 1.9 17 12-28 5-21 (80)
45 TIGR00540 hemY_coli hemY prote 49.1 45 0.00097 26.1 5.0 17 16-32 53-69 (409)
46 PF15220 HILPDA: Hypoxia-induc 48.6 47 0.001 18.4 3.6 23 1-24 1-23 (63)
47 PF07423 DUF1510: Protein of u 48.6 15 0.00033 26.5 2.1 19 8-26 18-36 (217)
48 COG3197 FixS Uncharacterized p 48.5 22 0.00047 20.0 2.2 13 1-13 1-13 (58)
49 PRK11677 hypothetical protein; 48.1 42 0.0009 22.3 4.0 10 5-14 3-12 (134)
50 PF15330 SIT: SHP2-interacting 46.9 24 0.00053 22.5 2.6 11 49-59 45-55 (107)
51 COG3898 Uncharacterized membra 46.7 42 0.00091 26.9 4.3 25 16-40 53-77 (531)
52 PRK10747 putative protoheme IX 46.0 53 0.0012 25.6 5.0 16 16-31 53-68 (398)
53 PF15168 TRIQK: Triple QxxK/R 45.6 50 0.0011 19.7 3.6 15 6-20 52-66 (79)
54 PF06596 PsbX: Photosystem II 41.1 53 0.0011 16.9 3.6 18 3-20 8-25 (39)
55 PF08113 CoxIIa: Cytochrome c 40.2 50 0.0011 16.3 3.6 12 18-29 19-30 (34)
56 COG2124 CypX Cytochrome P450 [ 39.9 38 0.00081 26.6 3.3 58 87-144 30-95 (411)
57 PF02238 COX7a: Cytochrome c o 38.9 62 0.0014 18.1 3.2 23 1-23 25-47 (56)
58 PRK05759 F0F1 ATP synthase sub 38.2 64 0.0014 21.5 3.9 13 1-13 1-13 (156)
59 PF10717 ODV-E18: Occlusion-de 36.9 62 0.0013 19.7 3.1 16 6-21 28-43 (85)
60 PF06024 DUF912: Nucleopolyhed 36.5 24 0.00053 22.1 1.4 25 10-34 66-90 (101)
61 PF05393 Hum_adeno_E3A: Human 35.9 1.1E+02 0.0023 18.9 4.1 8 47-54 64-71 (94)
62 CHL00114 psbX photosystem II p 35.7 60 0.0013 16.7 2.5 16 3-18 8-23 (39)
63 PRK14740 kdbF potassium-transp 35.0 57 0.0012 15.5 3.2 18 5-24 6-23 (29)
64 PF10389 CoatB: Bacteriophage 34.4 78 0.0017 16.9 3.8 19 9-27 26-44 (46)
65 PRK14750 kdpF potassium-transp 34.0 60 0.0013 15.4 3.4 6 19-24 18-23 (29)
66 PRK06568 F0F1 ATP synthase sub 33.9 62 0.0013 22.0 3.2 12 3-14 7-18 (154)
67 PF04689 S1FA: DNA binding pro 33.8 89 0.0019 18.0 3.3 10 4-13 15-24 (69)
68 PRK11380 hypothetical protein; 33.3 1.6E+02 0.0035 23.0 5.5 55 5-59 70-129 (353)
69 PRK09173 F0F1 ATP synthase sub 33.0 62 0.0013 21.8 3.1 13 2-14 3-15 (159)
70 PF08114 PMP1_2: ATPase proteo 33.0 47 0.001 17.3 1.9 10 25-34 29-38 (43)
71 PF01708 Gemini_mov: Geminivir 32.2 54 0.0012 20.2 2.4 13 15-27 48-60 (91)
72 COG0711 AtpF F0F1-type ATP syn 31.9 67 0.0015 21.8 3.2 12 3-14 9-20 (161)
73 PF02439 Adeno_E3_CR2: Adenovi 31.8 79 0.0017 16.2 3.6 6 8-13 8-13 (38)
74 PRK13415 flagella biosynthesis 30.4 1E+02 0.0022 22.4 3.9 12 107-118 139-150 (219)
75 PF06716 DUF1201: Protein of u 30.1 96 0.0021 16.6 4.4 14 1-14 1-17 (54)
76 PF07074 TRAP-gamma: Transloco 29.7 1.2E+02 0.0025 21.1 3.9 36 1-37 42-77 (170)
77 PF00430 ATP-synt_B: ATP synth 29.6 96 0.0021 19.7 3.5 21 3-23 2-22 (132)
78 PF03597 CcoS: Cytochrome oxid 29.0 98 0.0021 16.4 3.5 7 7-13 6-12 (45)
79 PRK03577 acid shock protein pr 28.7 83 0.0018 19.6 2.8 20 1-22 1-20 (102)
80 PRK14125 cell division suppres 28.6 1.4E+02 0.003 18.8 3.9 20 1-20 1-20 (103)
81 COG3071 HemY Uncharacterized e 27.9 1.7E+02 0.0036 23.3 4.9 26 7-32 44-69 (400)
82 PRK14471 F0F1 ATP synthase sub 27.8 89 0.0019 21.1 3.2 10 4-13 12-21 (164)
83 PHA03049 IMV membrane protein; 27.2 1.2E+02 0.0025 17.6 3.0 6 24-29 18-23 (68)
84 PF14575 EphA2_TM: Ephrin type 27.1 71 0.0015 18.8 2.3 11 4-14 2-12 (75)
85 PF14991 MLANA: Protein melan- 26.5 9.6 0.00021 24.5 -1.6 11 107-117 97-107 (118)
86 PF12451 VPS11_C: Vacuolar pro 26.1 53 0.0012 17.6 1.5 12 130-141 36-47 (49)
87 PF00672 HAMP: HAMP domain; I 26.0 1.2E+02 0.0025 16.7 3.1 8 26-33 20-27 (70)
88 PF13153 DUF3985: Protein of u 26.0 1.1E+02 0.0023 15.8 3.1 13 16-28 11-23 (44)
89 KOG3814 Signaling protein van 25.1 1.1E+02 0.0024 24.4 3.5 23 6-28 192-214 (531)
90 PRK01741 cell division protein 24.9 1.5E+02 0.0032 23.0 4.1 37 1-42 1-37 (332)
91 PF10828 DUF2570: Protein of u 24.7 1.8E+02 0.0039 18.4 4.0 18 5-22 4-21 (110)
92 KOG3054 Uncharacterized conser 24.6 1.3E+02 0.0028 22.3 3.6 13 1-13 1-13 (299)
93 COG4736 CcoQ Cbb3-type cytochr 24.4 1.5E+02 0.0032 16.8 4.2 13 23-35 24-36 (60)
94 COG5294 Uncharacterized protei 24.3 44 0.00096 21.4 1.1 13 1-13 1-13 (113)
95 PHA03240 envelope glycoprotein 24.3 1.5E+02 0.0033 21.5 3.9 12 32-43 234-245 (258)
96 PHA03265 envelope glycoprotein 24.1 43 0.00093 26.1 1.2 12 7-18 356-367 (402)
97 KOG1282 Serine carboxypeptidas 24.1 1.2E+02 0.0026 24.6 3.7 64 79-142 149-214 (454)
98 PRK13461 F0F1 ATP synthase sub 23.9 1.4E+02 0.0031 19.9 3.7 10 4-13 9-18 (159)
99 PRK08475 F0F1 ATP synthase sub 23.3 1.6E+02 0.0034 20.1 3.8 22 2-23 24-45 (167)
100 PRK04335 cell division protein 21.9 72 0.0016 24.5 2.0 17 23-39 19-35 (313)
101 COG3105 Uncharacterized protei 21.9 2.5E+02 0.0055 18.6 4.3 26 4-29 7-33 (138)
102 PF04971 Lysis_S: Lysis protei 21.4 85 0.0018 18.3 1.8 23 1-23 1-23 (68)
103 PF13893 RRM_5: RNA recognitio 21.2 1.5E+02 0.0031 15.6 4.2 34 86-119 2-39 (56)
104 KOG1312 DHHC-type Zn-finger pr 21.1 1E+02 0.0022 23.5 2.6 14 1-14 1-14 (341)
105 PRK08476 F0F1 ATP synthase sub 20.8 1.6E+02 0.0035 19.5 3.3 8 26-33 25-32 (141)
106 PRK06231 F0F1 ATP synthase sub 20.7 1.8E+02 0.0039 20.7 3.7 21 3-23 51-71 (205)
107 PRK13460 F0F1 ATP synthase sub 20.5 1.8E+02 0.0039 19.8 3.7 11 4-14 20-30 (173)
108 PHA03286 envelope glycoprotein 20.4 1.4E+02 0.003 24.2 3.3 21 2-23 390-410 (492)
No 1
>PLN02290 cytokinin trans-hydroxylase
Probab=99.70 E-value=6.4e-16 Score=122.84 Aligned_cols=129 Identities=26% Similarity=0.388 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhHHhcccchhHHHHHhcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCC-CCcccchhhhHHHHHHHhCC
Q 045884 16 TVVTWACKILNWAWLKPKKPEKQLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLD-DDIAPRVVPLYDQQEKLYGK 94 (144)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~yg~ 94 (144)
+.+-++|+.+..+++.++++..+++++++|||+++|++||+.++.....+...+...-. ++...+....+.+|.++||+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~ 95 (516)
T PLN02290 16 LLLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGK 95 (516)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCC
Confidence 34455566677788999999999999999999999999999888643222100000000 11111223356789999999
Q ss_pred eEEEeeCCcCeEEEcChhHHHHHH-hcCCCCCCCCc--ccccccccccccccC
Q 045884 95 NTYWWIGPIPMINIMDPDQIKEVF-TNINDFQKPKT--NPLGKILTTRLAIRE 144 (144)
Q Consensus 95 v~~~~~g~~~~vvv~dPe~ik~VL-~~~~~f~k~~~--~~~~~~lG~GLl~s~ 144 (144)
++.+|.|+.+.++++||+++++++ ++...+.++.. ....+.+|+|+++++
T Consensus 96 i~~~~~g~~~~vvv~dp~~v~~il~~~~~~~~r~~~~~~~~~~~~g~~l~~~~ 148 (516)
T PLN02290 96 RFIYWNGTEPRLCLTETELIKELLTKYNTVTGKSWLQQQGTKHFIGRGLLMAN 148 (516)
T ss_pred eEEEccCCccEEEECCHHHHHHHHhcCCCCCCCcchhhhHHHHHhcCCccccC
Confidence 999999999999999999999999 44333355432 123445688887653
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=4e-13 Score=106.30 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=65.3
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcC
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNI 121 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~ 121 (144)
-.|||+++|++||++++... .....+.++.++||+++.+|+|+.|+++++|++.++|++ ++.
T Consensus 27 lPPGP~~lPiIGnl~~l~~~-----------------~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d 89 (489)
T KOG0156|consen 27 LPPGPPPLPIIGNLHQLGSL-----------------PPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQD 89 (489)
T ss_pred CCcCCCCCCccccHHHcCCC-----------------chhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCC
Confidence 57899999999999998652 013468999999999999999999999999999999999 776
Q ss_pred CCC-CCCC-cccccccc--ccccccc
Q 045884 122 NDF-QKPK-TNPLGKIL--TTRLAIR 143 (144)
Q Consensus 122 ~~f-~k~~-~~~~~~~l--G~GLl~s 143 (144)
..| +|+. ....+.+. |.|++++
T Consensus 90 ~~fa~Rp~~~~~~~~~~~~~~~i~~a 115 (489)
T KOG0156|consen 90 LEFADRPDPTATLKYLSYGGKGIVFA 115 (489)
T ss_pred ccccCCCCchhhHHHhcCCCCceEeC
Confidence 788 5664 11223332 4666655
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.43 E-value=5.6e-13 Score=105.88 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=74.4
Q ss_pred HhcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-
Q 045884 40 RRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF- 118 (144)
Q Consensus 40 ~~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL- 118 (144)
+.++.|||+++|++||..++.... ........++..+||+++..|.|+.+.++++||+.+++|+
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~ 97 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPL---------------EEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILK 97 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcch---------------hHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHh
Confidence 455789999999999999986521 1234567888899999999999999999999999999999
Q ss_pred hcCCCCCCCC-cc-cccccccccccccC
Q 045884 119 TNINDFQKPK-TN-PLGKILTTRLAIRE 144 (144)
Q Consensus 119 ~~~~~f~k~~-~~-~~~~~lG~GLl~s~ 144 (144)
++++.+.|+. +. .+.+++|+|+++++
T Consensus 98 ~~~~~~~k~~~~~~~~~~~lG~gll~~~ 125 (497)
T KOG0157|consen 98 SSNENYPKGPDYPESLKPWLGDGLLFSD 125 (497)
T ss_pred cCcccCCCchhHHHHHHHHhcCccccCC
Confidence 6677777775 54 78899999999874
No 4
>PTZ00404 cytochrome P450; Provisional
Probab=99.39 E-value=1.6e-12 Score=102.62 Aligned_cols=89 Identities=18% Similarity=0.314 Sum_probs=66.6
Q ss_pred HHHhcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHH
Q 045884 38 QLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEV 117 (144)
Q Consensus 38 ~~~~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~V 117 (144)
+.+..++|||++.|++||+.++... ....+.++.++||++++++.|+.+.++++||++++++
T Consensus 25 ~~~~~~~pgp~~~p~~G~~~~~~~~------------------~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~i 86 (482)
T PTZ00404 25 KIHKNELKGPIPIPILGNLHQLGNL------------------PHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREM 86 (482)
T ss_pred hccCCCCCCCCCCCeeccHhhhccc------------------HHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHH
Confidence 3556789999999999998776431 1235788999999999999999999999999999999
Q ss_pred H-hcCCCCCC-CCcc-cccccccccccccC
Q 045884 118 F-TNINDFQK-PKTN-PLGKILTTRLAIRE 144 (144)
Q Consensus 118 L-~~~~~f~k-~~~~-~~~~~lG~GLl~s~ 144 (144)
+ ++...|.+ +... .....+|+|+++++
T Consensus 87 l~~~~~~~~~r~~~~~~~~~~~~~~l~~~~ 116 (482)
T PTZ00404 87 FVDNFDNFSDRPKIPSIKHGTFYHGIVTSS 116 (482)
T ss_pred HHhcchhhcCCCCcceeeeeccCCceeccC
Confidence 9 55556754 3222 22233588887653
No 5
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.34 E-value=5.9e-12 Score=99.15 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=76.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHhcccchhHHHHHhcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccc
Q 045884 1 MEFSVKSIAFGIVIVTVVTWACKILNWAWLKPKKPEKQLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPR 80 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
||++-+.++++..++++ +++..... +++..+ . +..+.|||++.|++||+.++... +
T Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~-~---~~~~Ppgp~~~P~iG~~~~~~~~------~----------- 56 (463)
T PLN02196 1 MDFSALFLTLFAGALFL--CLLRFLAG-FRRSSS-T---KLPLPPGTMGWPYVGETFQLYSQ------D----------- 56 (463)
T ss_pred CchHhhhhHHHHHHHHH--HHHHHHHH-hccCCC-C---CCCCCCCCCCCCccchHHHHHhc------C-----------
Confidence 88888888887774333 33332122 111111 1 12356777789999998775431 1
Q ss_pred hhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcCCCCCCCCc-ccccccccc-ccccc
Q 045884 81 VVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNINDFQKPKT-NPLGKILTT-RLAIR 143 (144)
Q Consensus 81 ~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~~~f~k~~~-~~~~~~lG~-GLl~s 143 (144)
....+.++.++||+++++|+|+.+.++++||+++++++ ++.+.| |+.. ......+|+ |++++
T Consensus 57 ~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~-~~~~~~~~~~~~g~~~l~~~ 121 (463)
T PLN02196 57 PNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF-KPTFPASKERMLGKQAIFFH 121 (463)
T ss_pred HHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc-cccCchHHHHHcCccccccc
Confidence 12357889999999999999999999999999999999 555556 4432 223334564 66654
No 6
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.27 E-value=2e-11 Score=97.33 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=55.1
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcC
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNI 121 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~ 121 (144)
..|||++.|++||+.++... ....+.+|.++||++++++.|+.++++++||+++++++ ++.
T Consensus 35 ~pPgp~~~P~iG~~~~~~~~------------------~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~ 96 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQLGPK------------------PHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHD 96 (517)
T ss_pred CCccCCCCCccccHHhcCCc------------------hhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcc
Confidence 46789899999998776321 12467889999999999999999999999999999999 666
Q ss_pred CCCCCC
Q 045884 122 NDFQKP 127 (144)
Q Consensus 122 ~~f~k~ 127 (144)
+.|.+.
T Consensus 97 ~~f~~r 102 (517)
T PLN02687 97 ANFSNR 102 (517)
T ss_pred hhhhcC
Confidence 678654
No 7
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.25 E-value=6.8e-11 Score=94.08 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=67.8
Q ss_pred HHHhcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEE---EeeCCcCeEEEcChhHH
Q 045884 38 QLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTY---WWIGPIPMINIMDPDQI 114 (144)
Q Consensus 38 ~~~~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~---~~~g~~~~vvv~dPe~i 114 (144)
+++++|+|||+++|++||+..+.... . .....+.+..++||..+. .|.|+.|+++++|||++
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i 91 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGMLHQI-----------P----RIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNI 91 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHHHcc-----------C----cHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHH
Confidence 56777999999999999997765410 1 123334455555776554 67889999999999999
Q ss_pred HHHH-hcCCCCCCCC-cccccccccccccccC
Q 045884 115 KEVF-TNINDFQKPK-TNPLGKILTTRLAIRE 144 (144)
Q Consensus 115 k~VL-~~~~~f~k~~-~~~~~~~lG~GLl~s~ 144 (144)
++|| ++++.|.|+. +..+.+++|+|+++++
T Consensus 92 ~~il~~~~~~~~k~~~~~~~~~~~g~gl~~~~ 123 (500)
T PLN02169 92 HHILSSNFGNYPKGPEFKKIFDVLGEGILTVD 123 (500)
T ss_pred HHHHhhCcccCCCcHHHHHHHHhhcCcccccC
Confidence 9999 7677888765 3334567899998875
No 8
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.25 E-value=1.1e-10 Score=92.24 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=57.5
Q ss_pred HHHhcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHH
Q 045884 38 QLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEV 117 (144)
Q Consensus 38 ~~~~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~V 117 (144)
+|+++|+|||+++|++||+..+..... + .......|.++ |++++++.+..|.++|+|||++++|
T Consensus 27 yw~rrGi~~~~p~p~~Gn~~~~~~~~~----------~-----~~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~elik~I 90 (499)
T KOG0158|consen 27 YWRRRGIPGPKPLPFLGNLPGMLKRER----------P-----GDLLLDIYTKY-RPVVGIYEGRQPALLVSDPELIKEI 90 (499)
T ss_pred hhccCCCCCCCCCCcEecHHHHHhccC----------c-----HHHHHHHHhcC-CCEEEEEecCCcceEecCHHHHHHH
Confidence 456679999999999999999876210 0 01123445444 8999999999999999999999999
Q ss_pred H-hcCCCCCC
Q 045884 118 F-TNINDFQK 126 (144)
Q Consensus 118 L-~~~~~f~k 126 (144)
+ +++++|+.
T Consensus 91 ~ik~F~~F~~ 100 (499)
T KOG0158|consen 91 LIKDFDNFYN 100 (499)
T ss_pred HHHhCccCcC
Confidence 9 99999954
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.25 E-value=2.8e-11 Score=96.56 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=55.3
Q ss_pred cCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hc
Q 045884 42 QGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TN 120 (144)
Q Consensus 42 ~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~ 120 (144)
.-+|||++.|++||+..+.... . .....+.+|.++||++++++.|+.+.++++|||++++++ ++
T Consensus 35 ~lpPgp~~~pl~G~l~~~~~~~-----------~----~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~ 99 (519)
T PLN00168 35 RLPPGPPAVPLLGSLVWLTNSS-----------A----DVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVER 99 (519)
T ss_pred CCCcCCCCCcccccHHhhcccc-----------c----cHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhc
Confidence 3467999999999987553210 0 123467889999999999999999999999999999999 66
Q ss_pred CCCCCC
Q 045884 121 INDFQK 126 (144)
Q Consensus 121 ~~~f~k 126 (144)
.+.|.+
T Consensus 100 ~~~f~~ 105 (519)
T PLN00168 100 GAALAD 105 (519)
T ss_pred CCcccc
Confidence 677754
No 10
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.23 E-value=6.4e-11 Score=94.30 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcC
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNI 121 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~ 121 (144)
.+|||++.|++||+.++... ....+.++.++||++++++.|+.+.++++||+++++++ ++.
T Consensus 33 ~ppgp~~~pl~G~~~~~~~~------------------~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~ 94 (514)
T PLN03112 33 LPPGPPRWPIVGNLLQLGPL------------------PHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQD 94 (514)
T ss_pred CccCCCCCCeeeeHHhcCCc------------------hHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCC
Confidence 47899999999998776320 12356888999999999999999999999999999999 777
Q ss_pred CCCCCCC
Q 045884 122 NDFQKPK 128 (144)
Q Consensus 122 ~~f~k~~ 128 (144)
+.|++..
T Consensus 95 ~~f~~~~ 101 (514)
T PLN03112 95 DVFASRP 101 (514)
T ss_pred cccccCC
Confidence 7886543
No 11
>PLN02183 ferulate 5-hydroxylase
Probab=99.23 E-value=5.8e-11 Score=94.71 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=54.2
Q ss_pred cCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hc
Q 045884 42 QGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TN 120 (144)
Q Consensus 42 ~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~ 120 (144)
+.+|||++.|++||+.++... ....+.+|.++||++++++.|+.+.++++||+++++++ ++
T Consensus 36 ~~ppgp~~~Pl~G~l~~~~~~------------------~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~ 97 (516)
T PLN02183 36 PYPPGPKGLPIIGNMLMMDQL------------------THRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQ 97 (516)
T ss_pred CCCcCCCCCCeeccHHhcCCc------------------chHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhh
Confidence 367899999999998765220 01356889999999999999999999999999999999 65
Q ss_pred CCCCCC
Q 045884 121 INDFQK 126 (144)
Q Consensus 121 ~~~f~k 126 (144)
.+.|++
T Consensus 98 ~~~f~~ 103 (516)
T PLN02183 98 DSVFSN 103 (516)
T ss_pred hhhhcC
Confidence 666754
No 12
>PLN02774 brassinosteroid-6-oxidase
Probab=99.21 E-value=3.1e-11 Score=95.04 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=60.0
Q ss_pred CC-CCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hc
Q 045884 43 GF-RGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TN 120 (144)
Q Consensus 43 ~~-pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~ 120 (144)
+. |||++.|++||...+.... ...+.++.++||+++.+|+|+.+.++++||+++++++ ++
T Consensus 31 ~~ppgp~~~P~~G~~~~~~~~~------------------~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~ 92 (463)
T PLN02774 31 GLPPGTMGWPLFGETTEFLKQG------------------PDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNE 92 (463)
T ss_pred CCCCCCCCCCchhhHHHHHHhh------------------HHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCC
Confidence 54 6888899999987765311 1356788999999999999999999999999999999 55
Q ss_pred CCCCCCCCcccccccccc-ccccc
Q 045884 121 INDFQKPKTNPLGKILTT-RLAIR 143 (144)
Q Consensus 121 ~~~f~k~~~~~~~~~lG~-GLl~s 143 (144)
.+.|.++......+++|. |++++
T Consensus 93 ~~~~~~~~~~~~~~~lg~~~~~~~ 116 (463)
T PLN02774 93 GKGLVPGYPQSMLDILGTCNIAAV 116 (463)
T ss_pred CCeEEecCCHHHHHHhCccchhhc
Confidence 666644321222234554 56553
No 13
>PLN02971 tryptophan N-hydroxylase
Probab=99.21 E-value=1.5e-10 Score=92.93 Aligned_cols=81 Identities=16% Similarity=0.066 Sum_probs=59.6
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhC-CeEEEeeCCcCeEEEcChhHHHHHH-hc
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYG-KNTYWWIGPIPMINIMDPDQIKEVF-TN 120 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg-~v~~~~~g~~~~vvv~dPe~ik~VL-~~ 120 (144)
-.|||+++|++||+.++... .. ....+.+|.++|| +++.+|+|+.++++++||++++++| ++
T Consensus 58 lPPGP~~lPiiGnl~~l~~~------------~~----~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~ 121 (543)
T PLN02971 58 LPPGPTGFPIVGMIPAMLKN------------RP----VFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQ 121 (543)
T ss_pred CCcCCCCCCcccchHHhccC------------Cc----HhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhc
Confidence 46799999999998877431 00 1235778999999 7999999999999999999999999 66
Q ss_pred CCCCCCCCccccccccccc
Q 045884 121 INDFQKPKTNPLGKILTTR 139 (144)
Q Consensus 121 ~~~f~k~~~~~~~~~lG~G 139 (144)
...|.+.........+|+|
T Consensus 122 ~~~f~~rp~~~~~~~l~~~ 140 (543)
T PLN02971 122 DALFASRPLTYAQKILSNG 140 (543)
T ss_pred chhhcCCCcccchhhccCC
Confidence 6778544322233345554
No 14
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.19 E-value=1.1e-10 Score=92.55 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=54.7
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcC
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNI 121 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~ 121 (144)
.+|||+++|++||+.++... + ....+.++.++||+++++|+|+.++++++|||++++++ ++.
T Consensus 29 ~pPgp~~~P~iG~~~~~~~~-------------~----~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~ 91 (499)
T PLN03234 29 LPPGPKGLPIIGNLHQMEKF-------------N----PQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQD 91 (499)
T ss_pred CCcCCCCCCeeccHHhcCCC-------------C----ccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCC
Confidence 57899999999998776320 0 12356888899999999999999999999999999999 666
Q ss_pred CCCCCC
Q 045884 122 NDFQKP 127 (144)
Q Consensus 122 ~~f~k~ 127 (144)
..|.+.
T Consensus 92 ~~f~~r 97 (499)
T PLN03234 92 LNFTAR 97 (499)
T ss_pred ccccCC
Confidence 677543
No 15
>PLN02500 cytochrome P450 90B1
Probab=99.13 E-value=1.7e-10 Score=91.46 Aligned_cols=88 Identities=16% Similarity=0.058 Sum_probs=60.2
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcC
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNI 121 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~ 121 (144)
-.|||++.|++||...+..... +. .....+.++.++||+++.++.|+.++++++|||++++++ ++.
T Consensus 39 ~PPgp~~~PiiGn~~~~~~~~~----------~~---~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~ 105 (490)
T PLN02500 39 LPPGNMGWPFLGETIGYLKPYS----------AT---SIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEG 105 (490)
T ss_pred CCCCCcCCCchhhHHHHHhhcc----------cC---ChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCC
Confidence 3569999999999875542110 11 123456888999999999999999999999999999999 555
Q ss_pred CCCCCCCcccccccccc-ccccc
Q 045884 122 NDFQKPKTNPLGKILTT-RLAIR 143 (144)
Q Consensus 122 ~~f~k~~~~~~~~~lG~-GLl~s 143 (144)
..|.+........++|. |++++
T Consensus 106 ~~f~~~~~~~~~~~~g~~~~~~~ 128 (490)
T PLN02500 106 RLFECSYPRSIGGILGKWSMLVL 128 (490)
T ss_pred CeEEeeCchHHHHHhCccccccc
Confidence 55643221222334553 56554
No 16
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.12 E-value=5.6e-10 Score=88.68 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcC
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNI 121 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~ 121 (144)
.+|||++.|++||+.++... . ....+.+|.++||+++++|.|+.+.++++|||.+++++ ++.
T Consensus 31 ~pPgp~~~p~~g~l~~~~~~------------~-----~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~ 93 (503)
T PLN02394 31 LPPGPAAVPIFGNWLQVGDD------------L-----NHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQG 93 (503)
T ss_pred CCcCCCCCCeeeeHHhcCCC------------c-----hhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCC
Confidence 57899999999998765320 0 12357889999999999999999999999999999999 555
Q ss_pred CCCCC
Q 045884 122 NDFQK 126 (144)
Q Consensus 122 ~~f~k 126 (144)
..|.+
T Consensus 94 ~~~~~ 98 (503)
T PLN02394 94 VEFGS 98 (503)
T ss_pred ccccC
Confidence 66754
No 17
>PLN02966 cytochrome P450 83A1
Probab=99.04 E-value=6.2e-10 Score=88.52 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcC
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNI 121 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~ 121 (144)
-+|||++.|++||+.++... .....+.+|.++||+++.+|+|+.+.++++||+++++++ ++.
T Consensus 30 ~ppgp~~~p~~G~l~~l~~~-----------------~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~ 92 (502)
T PLN02966 30 LPPGPSPLPVIGNLLQLQKL-----------------NPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQD 92 (502)
T ss_pred CCcCCCCCCeeccHHhcCCC-----------------ChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCc
Confidence 47899999999998776320 112457899999999999999999999999999999999 556
Q ss_pred CCCCC
Q 045884 122 NDFQK 126 (144)
Q Consensus 122 ~~f~k 126 (144)
..|.+
T Consensus 93 ~~~~~ 97 (502)
T PLN02966 93 VNFAD 97 (502)
T ss_pred ccccC
Confidence 66754
No 18
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.03 E-value=1e-09 Score=87.40 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=55.3
Q ss_pred hcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-h
Q 045884 41 RQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-T 119 (144)
Q Consensus 41 ~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~ 119 (144)
.+-+|||++.|++||+..+... ....+.++.++||+++++|+|+.+.++++||+++++++ +
T Consensus 30 ~~~pPgp~~~Pl~G~l~~~~~~------------------~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~ 91 (504)
T PLN00110 30 RKLPPGPRGWPLLGALPLLGNM------------------PHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKT 91 (504)
T ss_pred CCCcccCCCCCeeechhhcCCc------------------hHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHh
Confidence 3457899999999998665320 12357889999999999999999999999999999999 6
Q ss_pred cCCCCCCC
Q 045884 120 NINDFQKP 127 (144)
Q Consensus 120 ~~~~f~k~ 127 (144)
+.+.|++.
T Consensus 92 ~~~~f~~r 99 (504)
T PLN00110 92 LDINFSNR 99 (504)
T ss_pred cchhhcCC
Confidence 66677554
No 19
>PLN02655 ent-kaurene oxidase
Probab=99.02 E-value=4.9e-10 Score=88.36 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcCC
Q 045884 44 FRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNIN 122 (144)
Q Consensus 44 ~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~~ 122 (144)
.|||+++|++||+.++... .....+.+|.++||++++++.|+.++++++||+++++++ ++..
T Consensus 1 ppgp~~lP~iG~l~~~~~~-----------------~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~ 63 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEK-----------------KPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFS 63 (466)
T ss_pred CcCCCCCCccccHHHcCCC-----------------chhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCc
Confidence 4799999999999877431 012468899999999999999999999999999999999 7677
Q ss_pred CCCCC
Q 045884 123 DFQKP 127 (144)
Q Consensus 123 ~f~k~ 127 (144)
.|.+.
T Consensus 64 ~f~~r 68 (466)
T PLN02655 64 SISTR 68 (466)
T ss_pred hhcCC
Confidence 78554
No 20
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.02 E-value=1.1e-09 Score=87.30 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=61.9
Q ss_pred hcCCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHh---CCeEEEeeCCcCeEEEcChhHHHHH
Q 045884 41 RQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLY---GKNTYWWIGPIPMINIMDPDQIKEV 117 (144)
Q Consensus 41 ~~~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y---g~v~~~~~g~~~~vvv~dPe~ik~V 117 (144)
++++|||++.|++||+..+... + ..+.+|.++| |+++.+++|+.+.++++||+++++|
T Consensus 29 ~~~~pgp~~~p~~G~~~~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~i 89 (516)
T PLN03195 29 QRNRKGPKSWPIIGAALEQLKN------------Y-------DRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHV 89 (516)
T ss_pred ccccCCCCCCCeecchHHHHhc------------c-------chHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHH
Confidence 3468999999999998665430 1 1245666666 7899999999999999999999999
Q ss_pred H-hcCCCCCCCC-cc-ccccccccccccc
Q 045884 118 F-TNINDFQKPK-TN-PLGKILTTRLAIR 143 (144)
Q Consensus 118 L-~~~~~f~k~~-~~-~~~~~lG~GLl~s 143 (144)
+ ++...|.|+. +. ....++|+|++++
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 118 (516)
T PLN03195 90 LKTNFANYPKGEVYHSYMEVLLGDGIFNV 118 (516)
T ss_pred HhhCccccCCcHhHHHHHHHHhcCeeecc
Confidence 9 5556677764 32 3445568887764
No 21
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=98.98 E-value=8.3e-10 Score=87.35 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=62.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcCC
Q 045884 44 FRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNIN 122 (144)
Q Consensus 44 ~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~~ 122 (144)
.|||.+.|++||+.++...... . +....+.++.++||+++.++.++.+.++++||+.+++++ ++.+
T Consensus 32 ppgp~~~P~iG~~~~~~~~~~~---------~----~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~ 98 (472)
T PLN02987 32 PPGSLGLPLVGETLQLISAYKT---------E----NPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGK 98 (472)
T ss_pred cCCCcCCCchhhHHHHHhhccc---------C----ChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCc
Confidence 5688889999999886431000 0 123356788999999999999999999999999999999 6666
Q ss_pred CCCCCCccccccccc-ccccccC
Q 045884 123 DFQKPKTNPLGKILT-TRLAIRE 144 (144)
Q Consensus 123 ~f~k~~~~~~~~~lG-~GLl~s~ 144 (144)
.|.++......+++| +|+++++
T Consensus 99 ~f~~~~~~~~~~~lg~~~l~~~~ 121 (472)
T PLN02987 99 LFECSYPGSISNLLGKHSLLLMK 121 (472)
T ss_pred eEEecCcHHHHHHhCcccccccC
Confidence 775543222335566 4777653
No 22
>PLN02302 ent-kaurenoic acid oxidase
Probab=98.95 E-value=7.3e-09 Score=81.88 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCC--eEEEeeCCcCeEEEcChhHHHHHHhcC
Q 045884 44 FRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGK--NTYWWIGPIPMINIMDPDQIKEVFTNI 121 (144)
Q Consensus 44 ~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~--v~~~~~g~~~~vvv~dPe~ik~VL~~~ 121 (144)
.|||++.|++||+.++...... . .....+.++.++||+ +++++.++.+.++++|||++++++++.
T Consensus 44 pPgp~~~PilG~l~~~~~~~~~---------~----~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~ 110 (490)
T PLN02302 44 PPGDLGWPVIGNMWSFLRAFKS---------S----NPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD 110 (490)
T ss_pred cCCCCCCCccccHHHHHHhccc---------C----CcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC
Confidence 5788899999999887542110 0 123457889999997 688888999999999999999999555
Q ss_pred CCCCCC
Q 045884 122 NDFQKP 127 (144)
Q Consensus 122 ~~f~k~ 127 (144)
+.|.+.
T Consensus 111 ~~f~~~ 116 (490)
T PLN02302 111 DAFEPG 116 (490)
T ss_pred CccccC
Confidence 667543
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=98.94 E-value=1.6e-09 Score=85.16 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=61.0
Q ss_pred CCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcCC
Q 045884 44 FRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNIN 122 (144)
Q Consensus 44 ~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~~ 122 (144)
.|||++.|++||+.++...... . ....++.++.++||+++++|+|+.+.++++||+++++++ ++.+
T Consensus 9 Ppg~~~~P~iG~~~~l~~~~~~---------~----~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~ 75 (452)
T PLN03141 9 PKGSLGWPVIGETLDFISCAYS---------S----RPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGN 75 (452)
T ss_pred CCCCCCCCchhhHHHHHhhccc---------C----ChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCC
Confidence 5688889999999887531000 0 123456789999999999999999999999999999999 5555
Q ss_pred CCCCCCcccccccccc-ccccc
Q 045884 123 DFQKPKTNPLGKILTT-RLAIR 143 (144)
Q Consensus 123 ~f~k~~~~~~~~~lG~-GLl~s 143 (144)
.|..........++|+ |++++
T Consensus 76 ~~~~~~~~~~~~l~g~~~~~~~ 97 (452)
T PLN03141 76 AFVPAYPKSLTELMGKSSILLI 97 (452)
T ss_pred eeeccCchhHHHHhCccccccc
Confidence 5642211234455664 46554
No 24
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=98.90 E-value=2.1e-09 Score=82.70 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=62.7
Q ss_pred CCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcCC
Q 045884 44 FRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNIN 122 (144)
Q Consensus 44 ~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~~ 122 (144)
.|||++.|++||..++.... .....+.++.++||++++++.++.+.++++||+.+++++ ++.+
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~----------------~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~ 64 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKG----------------NPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSK 64 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTH----------------HHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTT
T ss_pred CcCCCCcCceeEHHHhcCCC----------------cHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccc
Confidence 47899999999999987310 123467899999999999999999999999999999999 5444
Q ss_pred CCCCC-Cccc----cccccccccccc
Q 045884 123 DFQKP-KTNP----LGKILTTRLAIR 143 (144)
Q Consensus 123 ~f~k~-~~~~----~~~~lG~GLl~s 143 (144)
.|.+. .... .....|.|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (463)
T PF00067_consen 65 YFSFRPRPPWFEIFRGPFGGKGLFFS 90 (463)
T ss_dssp TEEEEHCHHHHHHHHHHHTTTSSTTS
T ss_pred cccccccccccccccccccccccccc
Confidence 55432 2111 234567887765
No 25
>PLN02738 carotene beta-ring hydroxylase
Probab=98.89 E-value=6.5e-09 Score=84.98 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=68.5
Q ss_pred cchhHHHHHhcCCCCCCCcc----------------cCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCe
Q 045884 32 PKKPEKQLRRQGFRGNSYRF----------------LFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKN 95 (144)
Q Consensus 32 ~~~~~~~~~~~~~pgp~~~p----------------l~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v 95 (144)
+..++.+++++|+|||+--. ..||+..+.. . +....+.++.++||++
T Consensus 105 ~~~~~~~~~~~~~pgp~laa~t~~ye~y~~~~~~~~~~G~l~~i~~-------------g----~~~~~l~~lh~kYGpI 167 (633)
T PLN02738 105 PATLRNGLAKLGPPGELLAFLFTWVEAGEGYPKIPEAKGSISAVRG-------------E----AFFIPLYELFLTYGGI 167 (633)
T ss_pred hHHHHhhhhhCCCCCchHHHHHcccccccccccCccccCcHHHhcC-------------c----hHHHHHHHHHHHhCCE
Confidence 45666778899999996311 2355555432 1 1245678999999999
Q ss_pred EEEeeCCcCeEEEcChhHHHHHH-hcCCCCCCCC-cccccccccccccccC
Q 045884 96 TYWWIGPIPMINIMDPDQIKEVF-TNINDFQKPK-TNPLGKILTTRLAIRE 144 (144)
Q Consensus 96 ~~~~~g~~~~vvv~dPe~ik~VL-~~~~~f~k~~-~~~~~~~lG~GLl~s~ 144 (144)
+++++|+.+.++++||+.+++|+ ++.+.|.|.. ...+..+.|.|+++++
T Consensus 168 ~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~~l~~~d 218 (633)
T PLN02738 168 FRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPAD 218 (633)
T ss_pred EEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCCceecCC
Confidence 99999999999999999999999 5556777754 2334445677877653
No 26
>PLN03018 homomethionine N-hydroxylase
Probab=98.81 E-value=1.4e-08 Score=81.56 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=51.3
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHh-CCeEEEeeCCcCeEEEcChhHHHHHH-hc
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLY-GKNTYWWIGPIPMINIMDPDQIKEVF-TN 120 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-g~v~~~~~g~~~~vvv~dPe~ik~VL-~~ 120 (144)
-+|||++.|++||+.++... + ++ .....+..++| |+++++|.|+.++++++|||.+++++ ++
T Consensus 41 ~PPgp~~~P~iGnl~~l~~~------~----~~------~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~ 104 (534)
T PLN03018 41 LPPGPPGWPILGNLPELIMT------R----PR------SKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRER 104 (534)
T ss_pred CCcCCCCCCeeccHHHhccC------C----Cc------chhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhC
Confidence 36799999999999886421 0 01 01234555555 79999999999999999999999999 66
Q ss_pred CCCCCCC
Q 045884 121 INDFQKP 127 (144)
Q Consensus 121 ~~~f~k~ 127 (144)
.+.|.+.
T Consensus 105 ~~~f~~r 111 (534)
T PLN03018 105 DADLADR 111 (534)
T ss_pred cHhhcCC
Confidence 6678553
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=98.62 E-value=1.1e-07 Score=75.58 Aligned_cols=88 Identities=16% Similarity=0.058 Sum_probs=64.8
Q ss_pred CCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHH-hcCC
Q 045884 44 FRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVF-TNIN 122 (144)
Q Consensus 44 ~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL-~~~~ 122 (144)
.-|-.++|++|+..+....... ......+.+|.++||+++.++.|+.+.++++|||++++|+ ++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~ 80 (489)
T PLN02936 14 WGDDSGIPVADAKLEDVTDLLG-------------GALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGS 80 (489)
T ss_pred CCCCCCCccHHhHHhhHHHHhc-------------cHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccc
Confidence 3477889999998776543221 1223468899999999999999999999999999999999 4456
Q ss_pred CCCCCC-cccccccccccccccC
Q 045884 123 DFQKPK-TNPLGKILTTRLAIRE 144 (144)
Q Consensus 123 ~f~k~~-~~~~~~~lG~GLl~s~ 144 (144)
.|.+.. +....+.+|.|+++++
T Consensus 81 ~f~~~~~~~~~~~~~~~~i~~~~ 103 (489)
T PLN02936 81 KYAKGLVAEVSEFLFGSGFAIAE 103 (489)
T ss_pred cccCcchhhhhHHHhcCccccCC
Confidence 786654 2333445677877643
No 28
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.00 E-value=1.6e-05 Score=62.00 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=57.1
Q ss_pred cccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHHhcC-CCCCCCC
Q 045884 50 RFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVFTNI-NDFQKPK 128 (144)
Q Consensus 50 ~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL~~~-~~f~k~~ 128 (144)
.|.+|+..++... ..+++++..+|||++|.+..+++.+-++.||+....++++. +.++-..
T Consensus 40 iP~lG~a~~fgk~------------------P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~ 101 (486)
T KOG0684|consen 40 IPWLGSALAFGKD------------------PLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEE 101 (486)
T ss_pred cchhhHHHHhccC------------------HHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHH
Confidence 5789999888652 24678999999999999999999999999999999999443 3343222
Q ss_pred -c-cccccccccccc
Q 045884 129 -T-NPLGKILTTRLA 141 (144)
Q Consensus 129 -~-~~~~~~lG~GLl 141 (144)
+ ....+.||+|+.
T Consensus 102 ~~~~l~~~vFg~~v~ 116 (486)
T KOG0684|consen 102 AYSKLTTPVFGKGVV 116 (486)
T ss_pred HHHHhhhhhcCCCcc
Confidence 3 357778898875
No 29
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=97.99 E-value=4e-05 Score=61.34 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=41.6
Q ss_pred HHHHHHHhC-CeEEEeeCCcCeEEEcChhHHHHHH-hcCCCCCCCC-c-ccccccccccccccC
Q 045884 85 YDQQEKLYG-KNTYWWIGPIPMINIMDPDQIKEVF-TNINDFQKPK-T-NPLGKILTTRLAIRE 144 (144)
Q Consensus 85 ~~~~~~~yg-~v~~~~~g~~~~vvv~dPe~ik~VL-~~~~~f~k~~-~-~~~~~~lG~GLl~s~ 144 (144)
+.++.++++ .++.++.++. ++++|||++++|+ ++++.|.|+. + ..+.+++|+|+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi~~~~ 127 (502)
T PLN02426 66 YAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRGIFNVD 127 (502)
T ss_pred HHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCceeecC
Confidence 445666776 4566654433 8999999999999 6667898875 4 345567899998864
No 30
>PLN02648 allene oxide synthase
Probab=97.82 E-value=2.2e-05 Score=62.58 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=47.8
Q ss_pred CCCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCC-eEEEeeCCcCe-------EEEcChhHH
Q 045884 43 GFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGK-NTYWWIGPIPM-------INIMDPDQI 114 (144)
Q Consensus 43 ~~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~-v~~~~~g~~~~-------vvv~dPe~i 114 (144)
..||+.++|++|+..++...... . ....++.+..++||+ +|+..+++.|. ++++|||.+
T Consensus 18 ~PPg~~g~P~iG~~~~~~~~~~~---------~----~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~ 84 (480)
T PLN02648 18 EIPGSYGLPFLGAIKDRLDYFYF---------Q----GEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSF 84 (480)
T ss_pred CCCCCCCCcCcchhhhhhhHHHh---------c----ChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCce
Confidence 45677789999999876542111 0 112467777889998 99999887665 999999999
Q ss_pred HHHHh
Q 045884 115 KEVFT 119 (144)
Q Consensus 115 k~VL~ 119 (144)
+.+++
T Consensus 85 ~~v~~ 89 (480)
T PLN02648 85 PVLFD 89 (480)
T ss_pred eeeec
Confidence 99995
No 31
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.38 E-value=0.00034 Score=55.69 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCCCCcccCCCHHHHHHHHHhhcCCCCCCCCCcccchhhhHHHHHHHhCCeEEEe-eCCcCeEEEcChhHHHHHHh
Q 045884 44 FRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWW-IGPIPMINIMDPDQIKEVFT 119 (144)
Q Consensus 44 ~pgp~~~pl~Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~v~~~~-~g~~~~vvv~dPe~ik~VL~ 119 (144)
+|||...+++|......... ..++.+...+..++||++++.. +|+...|.+.||++++.++.
T Consensus 52 IP~p~~~~~l~~l~~~~~~~--------------~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r 114 (519)
T KOG0159|consen 52 IPGPKGLPFLGLLWIWRAGG--------------ATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFR 114 (519)
T ss_pred cCCCCCccHHHHHHHHHhhh--------------hhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHh
Confidence 78898899998877533211 1134556788899999999998 88889999999999999993
No 32
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=77.58 E-value=7 Score=21.42 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=10.5
Q ss_pred CchHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVI 14 (144)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (144)
||.+..+|-+++++
T Consensus 1 M~il~~LIpiSl~l 14 (51)
T TIGR00847 1 MEILTILIPISLLL 14 (51)
T ss_pred CchHHHHHHHHHHH
Confidence 77787787777773
No 33
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=74.40 E-value=11 Score=23.82 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhHHhcccchh
Q 045884 16 TVVTWACKILNWAWLKPKKP 35 (144)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ 35 (144)
++++++++++...+-.|.+.
T Consensus 28 ~~l~ll~~ll~~~~~~p~~~ 47 (108)
T PF07219_consen 28 VVLYLLLRLLRRLLSLPSRV 47 (108)
T ss_pred HHHHHHHHHHHHHHhChHHH
Confidence 44456667777766555443
No 34
>PF15050 SCIMP: SCIMP protein
Probab=73.79 E-value=8.3 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHhHHh
Q 045884 3 FSVKSIAFGIVIVTV--VTWACKILNWAW 29 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 29 (144)
-.|-.+|++++++-+ .+.+||++++..
T Consensus 7 nFWiiLAVaII~vS~~lglIlyCvcR~~l 35 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYCVCRWQL 35 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666553322 244445555444
No 35
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=72.69 E-value=6.7 Score=23.71 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhHHhcc
Q 045884 15 VTVVTWACKILNWAWLK 31 (144)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ 31 (144)
++.+.++|-+++..|.+
T Consensus 16 ~iiaIvvW~iv~ieYrk 32 (81)
T PF00558_consen 16 LIIAIVVWTIVYIEYRK 32 (81)
T ss_dssp HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556667666655533
No 36
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=61.41 E-value=21 Score=19.85 Aligned_cols=24 Identities=4% Similarity=0.044 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVIVTVVTWACKI 24 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (144)
||.++-..+.++.++...+.++.+
T Consensus 27 ~D~~LYr~Tm~L~~vG~~~~~~~l 50 (55)
T cd00928 27 VDRILYRLTMALTVVGTGYSLYLL 50 (55)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Confidence 688999999999987777776664
No 37
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=61.09 E-value=19 Score=23.40 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHhCCeEEEeeCCcCeEEEcChhHHHHHHhc
Q 045884 81 VVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVFTN 120 (144)
Q Consensus 81 ~~~~~~~~~~~yg~v~~~~~g~~~~vvv~dPe~ik~VL~~ 120 (144)
+...+.+|.++||.+-.. .....+...|++.+++++++
T Consensus 76 v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 76 VEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 455788999999986442 23556778899999999853
No 38
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=58.07 E-value=30 Score=21.82 Aligned_cols=9 Identities=0% Similarity=-0.351 Sum_probs=4.5
Q ss_pred HHhHHhccc
Q 045884 24 ILNWAWLKP 32 (144)
Q Consensus 24 ~~~~~~~~~ 32 (144)
++++++.++
T Consensus 42 ~~~k~~~SY 50 (102)
T PF15176_consen 42 VWYKYLASY 50 (102)
T ss_pred HHHHHHhcc
Confidence 555555443
No 39
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=53.51 E-value=12 Score=25.78 Aligned_cols=7 Identities=29% Similarity=0.600 Sum_probs=3.7
Q ss_pred HHHhcCC
Q 045884 38 QLRRQGF 44 (144)
Q Consensus 38 ~~~~~~~ 44 (144)
+.|++|+
T Consensus 125 ktRkYgv 131 (163)
T PF06679_consen 125 KTRKYGV 131 (163)
T ss_pred cceeecc
Confidence 3455665
No 40
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=53.26 E-value=45 Score=24.04 Aligned_cols=22 Identities=5% Similarity=0.060 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 045884 2 EFSVKSIAFGIVIVTVVTWACK 23 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (144)
.-+.-+|..||++++|.+++..
T Consensus 129 amLIClIIIAVLfLICT~LfLS 150 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLFLS 150 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677776677766554
No 41
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.33 E-value=29 Score=22.66 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 045884 6 KSIAFGIV 13 (144)
Q Consensus 6 ~~~~~~~~ 13 (144)
.+|.+|++
T Consensus 67 ~~Ii~gv~ 74 (122)
T PF01102_consen 67 IGIIFGVM 74 (122)
T ss_dssp HHHHHHHH
T ss_pred eehhHHHH
Confidence 34555555
No 42
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=50.98 E-value=19 Score=27.33 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVI 14 (144)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (144)
||+-.-||.+|++.
T Consensus 2 ~dLr~ILIIvG~IA 15 (324)
T COG3115 2 QDLRLILIIVGAIA 15 (324)
T ss_pred cchhhHHHHHHHHH
Confidence 67777788888874
No 43
>PF15050 SCIMP: SCIMP protein
Probab=49.93 E-value=40 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 045884 5 VKSIAFGIVIVTVVTWACKILNW 27 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (144)
++.|++++++-+.+||++|+.++
T Consensus 14 VaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 14 VAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888999986654
No 44
>PF13974 YebO: YebO-like protein
Probab=49.36 E-value=16 Score=22.05 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhHH
Q 045884 12 IVIVTVVTWACKILNWA 28 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (144)
++++++.+.+|++++++
T Consensus 5 ~~~~lv~livWFFVnRa 21 (80)
T PF13974_consen 5 VLVLLVGLIVWFFVNRA 21 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344555666666665
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=49.07 E-value=45 Score=26.09 Aligned_cols=17 Identities=6% Similarity=-0.275 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhHHhccc
Q 045884 16 TVVTWACKILNWAWLKP 32 (144)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (144)
++++++|+++.+.+..|
T Consensus 53 ~~~~~~~~l~~~~~~~p 69 (409)
T TIGR00540 53 AIIFAFEWGLRRFFRLG 69 (409)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 34455666666665444
No 46
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=48.62 E-value=47 Score=18.42 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=15.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVIVTVVTWACKI 24 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (144)
|.-++++-+.|++ +.++..+.++
T Consensus 1 mk~~lnlyllgvv-ltllsifvrl 23 (63)
T PF15220_consen 1 MKHVLNLYLLGVV-LTLLSIFVRL 23 (63)
T ss_pred ChhHHHHHHHHHH-HHHHHHHHHH
Confidence 6778999999988 3554444444
No 47
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=48.58 E-value=15 Score=26.46 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 045884 8 IAFGIVIVTVVTWACKILN 26 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ 26 (144)
+++|||+|+.+++++.++.
T Consensus 18 iaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHhhhhee
Confidence 4555554555555555433
No 48
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=48.55 E-value=22 Score=20.02 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=8.0
Q ss_pred CchHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIV 13 (144)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (144)
||.+.-++-++++
T Consensus 1 m~~l~~Lipvsi~ 13 (58)
T COG3197 1 MEILYILIPVSIL 13 (58)
T ss_pred CceeeeHHHHHHH
Confidence 5666666666665
No 49
>PRK11677 hypothetical protein; Provisional
Probab=48.12 E-value=42 Score=22.34 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 045884 5 VKSIAFGIVI 14 (144)
Q Consensus 5 ~~~~~~~~~~ 14 (144)
|..+++|++|
T Consensus 3 W~~a~i~liv 12 (134)
T PRK11677 3 WEYALIGLVV 12 (134)
T ss_pred HHHHHHHHHH
Confidence 5556666664
No 50
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=46.88 E-value=24 Score=22.45 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=7.6
Q ss_pred CcccCCCHHHH
Q 045884 49 YRFLFGDVKEH 59 (144)
Q Consensus 49 ~~pl~Gn~~~~ 59 (144)
.-|+.||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 35888997554
No 51
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=46.66 E-value=42 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHhcccchhHHHHH
Q 045884 16 TVVTWACKILNWAWLKPKKPEKQLR 40 (144)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (144)
.+...+|.+++..|.+|+...++++
T Consensus 53 aav~llwwlv~~iw~sP~t~~Ryfr 77 (531)
T COG3898 53 AAVLLLWWLVRSIWESPYTARRYFR 77 (531)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3346677888888988887777765
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=46.04 E-value=53 Score=25.60 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhHHhcc
Q 045884 16 TVVTWACKILNWAWLK 31 (144)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (144)
++++++++++...+..
T Consensus 53 ~~~~~~~~~~~~~~~~ 68 (398)
T PRK10747 53 VVLFAIEWLLRRIFRT 68 (398)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3334556666655543
No 53
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=45.59 E-value=50 Score=19.65 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 045884 6 KSIAFGIVIVTVVTW 20 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (144)
.++++|+.++++++.
T Consensus 52 ~l~l~ail~lL~a~Y 66 (79)
T PF15168_consen 52 ALVLAAILVLLLAFY 66 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555553344433
No 54
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=41.10 E-value=53 Score=16.90 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 045884 3 FSVKSIAFGIVIVTVVTW 20 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (144)
+++-+++-|++|++.+..
T Consensus 8 fl~Sl~aG~~iVv~~i~~ 25 (39)
T PF06596_consen 8 FLLSLVAGAVIVVIPIAG 25 (39)
T ss_dssp HHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhh
Confidence 456666666454454444
No 55
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=40.22 E-value=50 Score=16.34 Aligned_cols=12 Identities=0% Similarity=-0.396 Sum_probs=5.3
Q ss_pred HHHHHHHHhHHh
Q 045884 18 VTWACKILNWAW 29 (144)
Q Consensus 18 ~~~~~~~~~~~~ 29 (144)
++..|.-.+..+
T Consensus 19 ILvFWfgvf~~f 30 (34)
T PF08113_consen 19 ILVFWFGVFALF 30 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 344444444444
No 56
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.87 E-value=38 Score=26.60 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHhCCeEEEeeCC-c-CeEEEcChhHHHHHHhcCCCCCCCC----cc-ccccccccc-ccccC
Q 045884 87 QQEKLYGKNTYWWIGP-I-PMINIMDPDQIKEVFTNINDFQKPK----TN-PLGKILTTR-LAIRE 144 (144)
Q Consensus 87 ~~~~~yg~v~~~~~g~-~-~~vvv~dPe~ik~VL~~~~~f~k~~----~~-~~~~~lG~G-Ll~s~ 144 (144)
...+.||....+.... . ..+++++|+++++++++...+.+.. .. ...+.+|.+ +++.|
T Consensus 30 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d 95 (411)
T COG2124 30 RAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPRFFSSALGAGLRPRLLRPVLGDGSLLTLD 95 (411)
T ss_pred HHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcccccccccccccccchhhhccccceeecC
Confidence 3445566555544322 2 3789999999999995543233321 11 245677777 55543
No 57
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=38.94 E-value=62 Score=18.06 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=15.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVIVTVVTWACK 23 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (144)
||.++-..+.++.++..+++++.
T Consensus 25 ~D~~Ly~~Tm~L~~~gt~~~l~~ 47 (56)
T PF02238_consen 25 MDDILYRVTMPLTVAGTSYCLYG 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 57777778888776555555554
No 58
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=38.23 E-value=64 Score=21.48 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=5.5
Q ss_pred CchHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIV 13 (144)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (144)
||+=..++..++.
T Consensus 1 ~~~~~~~~~~~i~ 13 (156)
T PRK05759 1 MNLNGTLIGQLIA 13 (156)
T ss_pred CCchHHHHHHHHH
Confidence 4443444444444
No 59
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=36.90 E-value=62 Score=19.66 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 045884 6 KSIAFGIVIVTVVTWA 21 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (144)
-.|++++||+++++.+
T Consensus 28 MtILivLVIIiLlIml 43 (85)
T PF10717_consen 28 MTILIVLVIIILLIML 43 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555543444443
No 60
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=36.45 E-value=24 Score=22.08 Aligned_cols=25 Identities=0% Similarity=0.037 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhcccch
Q 045884 10 FGIVIVTVVTWACKILNWAWLKPKK 34 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (144)
++++.++|++++..+.+.+.+.|.|
T Consensus 66 i~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred HHHHHHHHHHHHHhhheEEEEEecc
Confidence 3333334444433333444444333
No 61
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=35.92 E-value=1.1e+02 Score=18.89 Aligned_cols=8 Identities=38% Similarity=0.642 Sum_probs=4.7
Q ss_pred CCCcccCC
Q 045884 47 NSYRFLFG 54 (144)
Q Consensus 47 p~~~pl~G 54 (144)
|-..|++|
T Consensus 64 PIYrPvI~ 71 (94)
T PF05393_consen 64 PIYRPVIG 71 (94)
T ss_pred Cccccccc
Confidence 33467776
No 62
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=35.73 E-value=60 Score=16.68 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 045884 3 FSVKSIAFGIVIVTVV 18 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (144)
+++-+++-++++++.+
T Consensus 8 F~~SL~~Ga~ivvipi 23 (39)
T CHL00114 8 FINSLLLGAIIVVIPI 23 (39)
T ss_pred HHHHHHHHHHHhHHHh
Confidence 4556666666643343
No 63
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=35.03 E-value=57 Score=15.52 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045884 5 VKSIAFGIVIVTVVTWACKI 24 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (144)
|.+.+.++. +++|.++.+
T Consensus 6 wls~a~a~~--Lf~YLv~AL 23 (29)
T PRK14740 6 WLSLALATG--LFVYLLVAL 23 (29)
T ss_pred HHHHHHHHH--HHHHHHHHH
Confidence 334444444 555665554
No 64
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=34.44 E-value=78 Score=16.92 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 045884 9 AFGIVIVTVVTWACKILNW 27 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (144)
..+++++++...+|++.++
T Consensus 26 g~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 26 GGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334434555566665544
No 65
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=33.99 E-value=60 Score=15.43 Aligned_cols=6 Identities=0% Similarity=-0.031 Sum_probs=2.5
Q ss_pred HHHHHH
Q 045884 19 TWACKI 24 (144)
Q Consensus 19 ~~~~~~ 24 (144)
|.+|++
T Consensus 18 YLvYAL 23 (29)
T PRK14750 18 YLVYAL 23 (29)
T ss_pred HHHHHH
Confidence 444443
No 66
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=33.93 E-value=62 Score=22.04 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHH
Q 045884 3 FSVKSIAFGIVI 14 (144)
Q Consensus 3 ~~~~~~~~~~~~ 14 (144)
++|+++.|++++
T Consensus 7 ~fwq~I~FlIll 18 (154)
T PRK06568 7 SFWLAVSFVIFV 18 (154)
T ss_pred HHHHHHHHHHHH
Confidence 567777777764
No 67
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.77 E-value=89 Score=17.98 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 045884 4 SVKSIAFGIV 13 (144)
Q Consensus 4 ~~~~~~~~~~ 13 (144)
|+.++++|++
T Consensus 15 IVLlvV~g~l 24 (69)
T PF04689_consen 15 IVLLVVAGLL 24 (69)
T ss_pred EEeehHHHHH
Confidence 4455555555
No 68
>PRK11380 hypothetical protein; Provisional
Probab=33.33 E-value=1.6e+02 Score=22.98 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhcccchhHHHHH-hcCCCCCC----CcccCCCHHHH
Q 045884 5 VKSIAFGIVIVTVVTWACKILNWAWLKPKKPEKQLR-RQGFRGNS----YRFLFGDVKEH 59 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pgp~----~~pl~Gn~~~~ 59 (144)
+.|+++|-++|.++..+.-+++..+-++++-+.+.. ..+++.-+ ....+|.+...
T Consensus 70 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~eq~~yy~~~~~~~LteEq~r~L~L~aVya~ 129 (353)
T PRK11380 70 LLLITAGCSFLYLLIMLGLIVRAGFKKAKKEQLRYYQAKGIEPLSEEKRQALQLIAVYRF 129 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCCCCHHHHHHHHHhhHHHH
Confidence 456777777656666666666666655555444443 44443222 12345665544
No 69
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=32.99 E-value=62 Score=21.76 Aligned_cols=13 Identities=0% Similarity=-0.069 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHH
Q 045884 2 EFSVKSIAFGIVI 14 (144)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (144)
+..|.++++++++
T Consensus 3 ~~~w~~i~f~i~l 15 (159)
T PRK09173 3 ATFWAFVGLVLFL 15 (159)
T ss_pred chHHHHHHHHHHH
Confidence 4567778777764
No 70
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=32.97 E-value=47 Score=17.27 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=4.9
Q ss_pred HhHHhcccch
Q 045884 25 LNWAWLKPKK 34 (144)
Q Consensus 25 ~~~~~~~~~~ 34 (144)
.|+-|..+++
T Consensus 29 iYRKw~aRkr 38 (43)
T PF08114_consen 29 IYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 71
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=32.17 E-value=54 Score=20.19 Aligned_cols=13 Identities=15% Similarity=-0.069 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhH
Q 045884 15 VTVVTWACKILNW 27 (144)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (144)
|+++|++|.++.+
T Consensus 48 Vg~~YL~y~~fLk 60 (91)
T PF01708_consen 48 VGCLYLAYTWFLK 60 (91)
T ss_pred HHHHHHHHHHHHH
Confidence 3556666665443
No 72
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=31.90 E-value=67 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHH
Q 045884 3 FSVKSIAFGIVI 14 (144)
Q Consensus 3 ~~~~~~~~~~~~ 14 (144)
.+|+++++++.+
T Consensus 9 ~~~~~i~F~ill 20 (161)
T COG0711 9 ILWQLIAFVILL 20 (161)
T ss_pred HHHHHHHHHHHH
Confidence 345555555553
No 73
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.81 E-value=79 Score=16.16 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.6
Q ss_pred HHHHHH
Q 045884 8 IAFGIV 13 (144)
Q Consensus 8 ~~~~~~ 13 (144)
+.+||+
T Consensus 8 IIv~V~ 13 (38)
T PF02439_consen 8 IIVAVV 13 (38)
T ss_pred HHHHHH
Confidence 344444
No 74
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=30.39 E-value=1e+02 Score=22.39 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=10.1
Q ss_pred EEcChhHHHHHH
Q 045884 107 NIMDPDQIKEVF 118 (144)
Q Consensus 107 vv~dPe~ik~VL 118 (144)
.+.||+.+++++
T Consensus 139 Ei~d~~eve~il 150 (219)
T PRK13415 139 EIEDEKEIEEIL 150 (219)
T ss_pred ecCCHHHHHHHH
Confidence 457899999998
No 75
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=30.08 E-value=96 Score=16.59 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=8.6
Q ss_pred CchHH---HHHHHHHHH
Q 045884 1 MEFSV---KSIAFGIVI 14 (144)
Q Consensus 1 ~~~~~---~~~~~~~~~ 14 (144)
||-++ .+.++|.+|
T Consensus 1 MDCvLRs~L~~~F~~lI 17 (54)
T PF06716_consen 1 MDCVLRSYLLLAFGFLI 17 (54)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 55554 456777774
No 76
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=29.72 E-value=1.2e+02 Score=21.14 Aligned_cols=36 Identities=19% Similarity=0.034 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHhcccchhHH
Q 045884 1 MEFSVKSIAFGIVIVTVVTWACKILNWAWLKPKKPEK 37 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (144)
||..=++|.++++. ++..++..+.|+..-+..+++-
T Consensus 42 m~~~~~~I~f~i~t-~~sayll~fAYkNvk~~lKhKI 77 (170)
T PF07074_consen 42 MDLYDSLIVFVIVT-LVSAYLLAFAYKNVKFVLKHKI 77 (170)
T ss_pred cccchhhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHH
Confidence 67777788888885 4444444556766543334333
No 77
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=29.59 E-value=96 Score=19.75 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 045884 3 FSVKSIAFGIVIVTVVTWACK 23 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (144)
++|+++.|++++.++-+++|.
T Consensus 2 l~~~~i~Flil~~~l~~~~~~ 22 (132)
T PF00430_consen 2 LFWQLINFLILFFLLNKFLYK 22 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 457777777775444444443
No 78
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=28.96 E-value=98 Score=16.36 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 045884 7 SIAFGIV 13 (144)
Q Consensus 7 ~~~~~~~ 13 (144)
++.++++
T Consensus 6 lip~sl~ 12 (45)
T PF03597_consen 6 LIPVSLI 12 (45)
T ss_pred HHHHHHH
Confidence 3444444
No 79
>PRK03577 acid shock protein precursor; Provisional
Probab=28.74 E-value=83 Score=19.64 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVIVTVVTWAC 22 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (144)
|.+++.+++.++. .+...+|
T Consensus 1 MKKVLAlvVAa~~--glSs~AF 20 (102)
T PRK03577 1 MKKVLALVVAAAM--GLSSAAF 20 (102)
T ss_pred ChHHHHHHHHHHH--HhhHHHH
Confidence 7777888877775 4444433
No 80
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=28.64 E-value=1.4e+02 Score=18.79 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=13.3
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVIVTVVTW 20 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (144)
|..+|+..-++++.++++.+
T Consensus 1 ~~~~~~~~~~~ii~~~l~~~ 20 (103)
T PRK14125 1 LKLKESKIHVSIFFVLTALV 20 (103)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 56788888888874333333
No 81
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=27.95 E-value=1.7e+02 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhccc
Q 045884 7 SIAFGIVIVTVVTWACKILNWAWLKP 32 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (144)
++++.++++++++.+..++.++...+
T Consensus 44 lv~~~ii~lvv~~~l~~~l~~v~~~~ 69 (400)
T COG3071 44 LVIFLIIALVVLYLLEWLLRRVLRTP 69 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33333443344444444555554333
No 82
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=27.82 E-value=89 Score=21.10 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 045884 4 SVKSIAFGIV 13 (144)
Q Consensus 4 ~~~~~~~~~~ 13 (144)
+|.++.|+|+
T Consensus 12 ~~~~i~Flil 21 (164)
T PRK14471 12 FWQTILFLIL 21 (164)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 83
>PHA03049 IMV membrane protein; Provisional
Probab=27.24 E-value=1.2e+02 Score=17.63 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.5
Q ss_pred HHhHHh
Q 045884 24 ILNWAW 29 (144)
Q Consensus 24 ~~~~~~ 29 (144)
++|..|
T Consensus 18 IvYgiY 23 (68)
T PHA03049 18 IVYGIY 23 (68)
T ss_pred HHHHHH
Confidence 344444
No 84
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=27.14 E-value=71 Score=18.81 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 045884 4 SVKSIAFGIVI 14 (144)
Q Consensus 4 ~~~~~~~~~~~ 14 (144)
+...+++|+++
T Consensus 2 ii~~~~~g~~~ 12 (75)
T PF14575_consen 2 IIASIIVGVLL 12 (75)
T ss_dssp HHHHHHHHHHH
T ss_pred EEehHHHHHHH
Confidence 34455666653
No 85
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=26.49 E-value=9.6 Score=24.53 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=0.4
Q ss_pred EEcChhHHHHH
Q 045884 107 NIMDPDQIKEV 117 (144)
Q Consensus 107 vv~dPe~ik~V 117 (144)
|-+-|.+-+++
T Consensus 97 VPnAPPAYeKi 107 (118)
T PF14991_consen 97 VPNAPPAYEKI 107 (118)
T ss_dssp ------B----
T ss_pred CCCCCchhhhc
Confidence 33334444443
No 86
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=26.06 E-value=53 Score=17.62 Aligned_cols=12 Identities=0% Similarity=0.105 Sum_probs=8.6
Q ss_pred cccccccccccc
Q 045884 130 NPLGKILTTRLA 141 (144)
Q Consensus 130 ~~~~~~lG~GLl 141 (144)
..+..++|+|++
T Consensus 36 ~vIaeyfGrGv~ 47 (49)
T PF12451_consen 36 SVIAEYFGRGVM 47 (49)
T ss_pred hhHHHHHccccc
Confidence 346677888876
No 87
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=26.04 E-value=1.2e+02 Score=16.68 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=2.8
Q ss_pred hHHhcccc
Q 045884 26 NWAWLKPK 33 (144)
Q Consensus 26 ~~~~~~~~ 33 (144)
.+...+|-
T Consensus 20 ~~~i~~pl 27 (70)
T PF00672_consen 20 ARRITRPL 27 (70)
T ss_dssp -HTTCCCH
T ss_pred HHHHHHHH
Confidence 33334443
No 88
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=26.03 E-value=1.1e+02 Score=15.78 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHH
Q 045884 16 TVVTWACKILNWA 28 (144)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (144)
+++|.++++.|-.
T Consensus 11 lliyv~~kvayva 23 (44)
T PF13153_consen 11 LLIYVFFKVAYVA 23 (44)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666655543
No 89
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=25.10 E-value=1.1e+02 Score=24.36 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 045884 6 KSIAFGIVIVTVVTWACKILNWA 28 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (144)
+++++.|.+.+++||+|.++.-+
T Consensus 192 Alll~LV~~~~fayWLFYiVri~ 214 (531)
T KOG3814|consen 192 ALLLVLVFLIVFAYWLFYIVRIL 214 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445555456777777665444
No 90
>PRK01741 cell division protein ZipA; Provisional
Probab=24.86 E-value=1.5e+02 Score=23.00 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHhcccchhHHHHHhc
Q 045884 1 MEFSVKSIAFGIVIVTVVTWACKILNWAWLKPKKPEKQLRRQ 42 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (144)
||+=--+|..|++. ++++++ ...|--||..+.++++.
T Consensus 1 MdLn~iliILg~la-l~~Lv~----hgiWsnRrEKSqyF~n~ 37 (332)
T PRK01741 1 MDLNTILIILGILA-LVALVA----HGIWSNRREKSQYFSNA 37 (332)
T ss_pred CcceehHHHHHHHH-HHHHHH----hhhhhhhhHHHHhhhcc
Confidence 66655566666662 333333 34455566656666543
No 91
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.75 E-value=1.8e+02 Score=18.35 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045884 5 VKSIAFGIVIVTVVTWAC 22 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (144)
|..++++++++++..|+|
T Consensus 4 ~~~~~l~~lvl~L~~~l~ 21 (110)
T PF10828_consen 4 YIYIALAVLVLGLGGWLW 21 (110)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555333333433
No 92
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=1.3e+02 Score=22.34 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=6.2
Q ss_pred CchHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIV 13 (144)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (144)
|+.|+.+++..++
T Consensus 1 m~~~v~vlVaa~l 13 (299)
T KOG3054|consen 1 MEEIVAVLVAAAL 13 (299)
T ss_pred CchHHHHHHHHHH
Confidence 5555554444333
No 93
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.41 E-value=1.5e+02 Score=16.84 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=5.9
Q ss_pred HHHhHHhcccchh
Q 045884 23 KILNWAWLKPKKP 35 (144)
Q Consensus 23 ~~~~~~~~~~~~~ 35 (144)
...+..+++.+|.
T Consensus 24 avi~~ayr~~~K~ 36 (60)
T COG4736 24 AVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHhcccchh
Confidence 3444555444443
No 94
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.30 E-value=44 Score=21.45 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=7.1
Q ss_pred CchHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIV 13 (144)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (144)
|-+|+..|+..++
T Consensus 1 MKkil~~ilall~ 13 (113)
T COG5294 1 MKKILIGILALLL 13 (113)
T ss_pred CcchHHHHHHHHH
Confidence 5666665544444
No 95
>PHA03240 envelope glycoprotein M; Provisional
Probab=24.26 E-value=1.5e+02 Score=21.51 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=7.0
Q ss_pred cchhHHHHHhcC
Q 045884 32 PKKPEKQLRRQG 43 (144)
Q Consensus 32 ~~~~~~~~~~~~ 43 (144)
|++...+|+.++
T Consensus 234 PQKl~dKw~~~k 245 (258)
T PHA03240 234 PQKLFDKWDLHG 245 (258)
T ss_pred cHHHHHHHhhhc
Confidence 566666666544
No 96
>PHA03265 envelope glycoprotein D; Provisional
Probab=24.11 E-value=43 Score=26.12 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 045884 7 SIAFGIVIVTVV 18 (144)
Q Consensus 7 ~~~~~~~~~~~~ 18 (144)
+..+|+|+|.++
T Consensus 356 ~~i~glv~vg~i 367 (402)
T PHA03265 356 LGIAGLVLVGVI 367 (402)
T ss_pred cchhhhhhhhHH
Confidence 344566544443
No 97
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=24.06 E-value=1.2e+02 Score=24.56 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=35.7
Q ss_pred cchhhhHHHHHHHhCCeE--EEeeCCcCeEEEcChhHHHHHHhcCCCCCCCCcccccccccccccc
Q 045884 79 PRVVPLYDQQEKLYGKNT--YWWIGPIPMINIMDPDQIKEVFTNINDFQKPKTNPLGKILTTRLAI 142 (144)
Q Consensus 79 ~~~~~~~~~~~~~yg~v~--~~~~g~~~~vvv~dPe~ik~VL~~~~~f~k~~~~~~~~~lG~GLl~ 142 (144)
++...++.+|.+++.... -+++.++..-=..=|..+++|++..+...++..+.-.-.+|+|+..
T Consensus 149 ~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td 214 (454)
T KOG1282|consen 149 KDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTD 214 (454)
T ss_pred HHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccC
Confidence 345667888888875321 2334445444455699999999543322333333233335776643
No 98
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=23.91 E-value=1.4e+02 Score=19.93 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 045884 4 SVKSIAFGIV 13 (144)
Q Consensus 4 ~~~~~~~~~~ 13 (144)
+|+++.|.++
T Consensus 9 ~~~~inF~il 18 (159)
T PRK13461 9 IATIINFIIL 18 (159)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 99
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=23.27 E-value=1.6e+02 Score=20.11 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 045884 2 EFSVKSIAFGIVIVTVVTWACK 23 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (144)
+.+|+++.+.|+++++-.++|.
T Consensus 24 ~~~~~~inflil~~lL~~fl~k 45 (167)
T PRK08475 24 DIIERTINFLIFVGILWYFAAK 45 (167)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666654333344443
No 100
>PRK04335 cell division protein ZipA; Provisional
Probab=21.93 E-value=72 Score=24.45 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=8.5
Q ss_pred HHHhHHhcccchhHHHH
Q 045884 23 KILNWAWLKPKKPEKQL 39 (144)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ 39 (144)
-++..+|-+++..+.++
T Consensus 19 LL~HGlWtsrKe~~~~f 35 (313)
T PRK04335 19 LLFHGLWTSKKEGKSKF 35 (313)
T ss_pred HHHhccccccccccchh
Confidence 34566665554333333
No 101
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.88 E-value=2.5e+02 Score=18.64 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhHHh
Q 045884 4 SVKSIAFGIVIVTVV-TWACKILNWAW 29 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ 29 (144)
.|..++.|+||-+++ +++.|+.....
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~ 33 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKL 33 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 577788888864444 33336655544
No 102
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.41 E-value=85 Score=18.28 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVIVTVVTWACK 23 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (144)
||++-.-++-|.+...+.+++.+
T Consensus 1 mdki~tg~aYgtSag~~~~wl~~ 23 (68)
T PF04971_consen 1 MDKITTGAAYGTSAGSAGYWLLQ 23 (68)
T ss_pred CchhhhhhccccchhhHHHHHHH
Confidence 45554444444443333344333
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=21.17 E-value=1.5e+02 Score=15.59 Aligned_cols=34 Identities=6% Similarity=0.023 Sum_probs=21.6
Q ss_pred HHHHHHhCCeEEEeeCCc----CeEEEcChhHHHHHHh
Q 045884 86 DQQEKLYGKNTYWWIGPI----PMINIMDPDQIKEVFT 119 (144)
Q Consensus 86 ~~~~~~yg~v~~~~~g~~----~~vvv~dPe~ik~VL~ 119 (144)
.+...+||++-.+.+... -.+-..+++.++...+
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 355678999876654432 2444568998888873
No 104
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=21.05 E-value=1e+02 Score=23.49 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=12.3
Q ss_pred CchHHHHHHHHHHH
Q 045884 1 MEFSVKSIAFGIVI 14 (144)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (144)
||+.|+++..+.++
T Consensus 1 Mdf~wllLf~lai~ 14 (341)
T KOG1312|consen 1 MDFLWLLLFYLAIV 14 (341)
T ss_pred CchhHHHHHHHHHH
Confidence 99999999888874
No 105
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.80 E-value=1.6e+02 Score=19.46 Aligned_cols=8 Identities=38% Similarity=0.206 Sum_probs=3.1
Q ss_pred hHHhcccc
Q 045884 26 NWAWLKPK 33 (144)
Q Consensus 26 ~~~~~~~~ 33 (144)
.++.|+|.
T Consensus 25 ~kfl~kPi 32 (141)
T PRK08476 25 NSWLYKPL 32 (141)
T ss_pred HHHHHHHH
Confidence 33334443
No 106
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.70 E-value=1.8e+02 Score=20.67 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 045884 3 FSVKSIAFGIVIVTVVTWACK 23 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (144)
++++++.+.++++++-.++|.
T Consensus 51 ~i~qlInFlIlv~lL~k~l~k 71 (205)
T PRK06231 51 FIAHLIAFSILLLLGIFLFWK 71 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666664444444443
No 107
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.55 E-value=1.8e+02 Score=19.84 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 045884 4 SVKSIAFGIVI 14 (144)
Q Consensus 4 ~~~~~~~~~~~ 14 (144)
+|.++.|.+++
T Consensus 20 ~~~~i~Flil~ 30 (173)
T PRK13460 20 VWTLVTFLVVV 30 (173)
T ss_pred HHHHHHHHHHH
Confidence 45555555553
No 108
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.36 E-value=1.4e+02 Score=24.21 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 045884 2 EFSVKSIAFGIVIVTVVTWACK 23 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (144)
+.++.+++.|.++ +++..+++
T Consensus 390 ~~l~~s~~~~~~~-~~~~~~~~ 410 (492)
T PHA03286 390 SLLVSSMAAGAIL-VVLLFALC 410 (492)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH
Confidence 3456677777764 44444343
Done!