BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045886
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 41/93 (44%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSS 65
           L  +NL  N+++G I  ++G+L  L+ LDLS N                       NN S
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714

Query: 66  GKIPLGTQLQSFNASVYAGNLELCGLPLANMCP 98
           G IP   Q ++F  + +  N  LCG PL    P
Sbjct: 715 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747



 Score = 30.0 bits (66), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 4   VGLIAVNLSRNNLTGPIT--PKIGELTSLDFLDLSRN 38
             L +++LSRN+L+GP+T    +G  + L FL++S N
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 133


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 41/93 (44%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSS 65
           L  +NL  N+++G I  ++G+L  L+ LDLS N                       NN S
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

Query: 66  GKIPLGTQLQSFNASVYAGNLELCGLPLANMCP 98
           G IP   Q ++F  + +  N  LCG PL    P
Sbjct: 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750



 Score = 29.6 bits (65), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 4   VGLIAVNLSRNNLTGPIT--PKIGELTSLDFLDLSRN 38
             L +++LSRN+L+GP+T    +G  + L FL++S N
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136


>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSSGKI 68
           ++L++N+L   +  K+G   +L+ LDL  N                      +NN  G+I
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 69  PLGTQLQSFNASVYAGNLELCGLPLA 94
           P G  LQ F+ S YA N  LCG PL 
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPLP 310



 Score = 29.6 bits (65), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 8   AVNLSRNNLTGPITPKIGELTSLDFLDLSRN 38
           ++ +SRN LTG I P    L +L F+DLSRN
Sbjct: 178 SMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207



 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 22/56 (39%)

Query: 14  NNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSSGKIP 69
           NNL GPI P I +LT L +L ++                        YN  SG +P
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,050,251
Number of Sequences: 62578
Number of extensions: 111415
Number of successful extensions: 284
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 16
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)