Query 045886
Match_columns 184
No_of_seqs 251 out of 2488
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.7 1.4E-17 2.9E-22 145.7 10.5 97 2-98 440-538 (623)
2 PLN00113 leucine-rich repeat r 99.6 2.8E-15 6E-20 137.0 9.7 90 2-91 521-610 (968)
3 PLN00113 leucine-rich repeat r 99.4 1.4E-12 3.1E-17 119.3 9.1 91 2-92 497-588 (968)
4 PLN03150 hypothetical protein; 99.4 1.4E-12 3E-17 114.4 7.2 85 6-90 420-505 (623)
5 PF13855 LRR_8: Leucine rich r 99.1 3.4E-11 7.3E-16 74.1 2.3 61 4-64 1-61 (61)
6 KOG0617 Ras suppressor protein 99.0 6.9E-11 1.5E-15 86.8 -1.1 84 2-87 54-139 (264)
7 PF14580 LRR_9: Leucine-rich r 98.8 5.7E-09 1.2E-13 77.5 4.5 82 3-87 41-125 (175)
8 KOG4237 Extracellular matrix p 98.7 5.8E-09 1.3E-13 85.1 2.1 93 2-94 272-365 (498)
9 KOG0617 Ras suppressor protein 98.6 4.2E-09 9.1E-14 77.5 -0.8 83 2-86 31-113 (264)
10 KOG0472 Leucine-rich repeat pr 98.6 1.6E-08 3.5E-13 82.9 1.9 85 2-88 433-541 (565)
11 PF12799 LRR_4: Leucine Rich r 98.5 6.9E-08 1.5E-12 55.3 2.7 36 5-41 2-37 (44)
12 KOG0472 Leucine-rich repeat pr 98.5 1.4E-08 3E-13 83.2 -0.5 83 2-87 226-309 (565)
13 KOG0444 Cytoskeletal regulator 98.5 2.1E-08 4.6E-13 86.4 0.2 83 3-87 102-185 (1255)
14 PF13855 LRR_8: Leucine rich r 98.5 7.4E-08 1.6E-12 59.0 1.6 59 28-86 1-60 (61)
15 KOG4194 Membrane glycoprotein 98.4 1.7E-08 3.6E-13 86.2 -2.7 69 3-71 292-384 (873)
16 KOG4194 Membrane glycoprotein 98.4 6.7E-08 1.5E-12 82.6 0.1 91 3-94 364-458 (873)
17 PF12799 LRR_4: Leucine Rich r 98.3 4.8E-07 1E-11 51.8 3.1 38 28-66 1-38 (44)
18 KOG0618 Serine/threonine phosp 98.3 6.4E-08 1.4E-12 86.1 -1.9 86 2-89 381-490 (1081)
19 KOG1259 Nischarin, modulator o 98.3 1.1E-07 2.4E-12 75.6 -0.4 79 4-85 284-362 (490)
20 KOG4579 Leucine-rich repeat (L 98.3 6.6E-08 1.4E-12 68.6 -1.7 81 4-86 53-134 (177)
21 PF14580 LRR_9: Leucine-rich r 98.3 3.8E-07 8.3E-12 67.8 1.9 82 2-87 17-100 (175)
22 KOG0618 Serine/threonine phosp 98.2 2.3E-07 5.1E-12 82.6 -1.5 88 2-90 357-445 (1081)
23 KOG0444 Cytoskeletal regulator 98.1 1E-06 2.2E-11 76.4 1.2 84 2-87 76-162 (1255)
24 KOG1859 Leucine-rich repeat pr 98.1 1.4E-07 3.1E-12 82.4 -4.0 85 4-91 187-295 (1096)
25 PRK15387 E3 ubiquitin-protein 97.9 6.4E-06 1.4E-10 73.9 2.9 76 4-88 382-458 (788)
26 PLN03210 Resistant to P. syrin 97.9 3.2E-05 6.8E-10 72.8 7.5 82 3-85 633-714 (1153)
27 PRK15387 E3 ubiquitin-protein 97.8 2E-05 4.3E-10 70.8 4.5 58 6-68 404-461 (788)
28 KOG4237 Extracellular matrix p 97.7 5E-06 1.1E-10 68.3 -0.5 84 6-91 69-154 (498)
29 PRK15370 E3 ubiquitin-protein 97.7 1.7E-05 3.7E-10 71.2 2.7 58 4-67 325-382 (754)
30 PRK15370 E3 ubiquitin-protein 97.7 6.8E-05 1.5E-09 67.4 6.0 13 53-65 263-275 (754)
31 PLN03210 Resistant to P. syrin 97.7 0.00011 2.3E-09 69.3 7.4 84 3-88 610-694 (1153)
32 KOG4658 Apoptotic ATPase [Sign 97.7 1.7E-05 3.7E-10 72.3 1.8 80 2-82 569-649 (889)
33 COG4886 Leucine-rich repeat (L 97.7 1.3E-05 2.7E-10 66.7 0.9 79 5-85 141-219 (394)
34 KOG0532 Leucine-rich repeat (L 97.7 4E-06 8.6E-11 71.7 -2.4 75 2-79 119-193 (722)
35 COG4886 Leucine-rich repeat (L 97.7 2.6E-05 5.7E-10 64.8 2.4 83 3-87 115-198 (394)
36 KOG4579 Leucine-rich repeat (L 97.6 3.7E-06 8.1E-11 59.9 -2.4 66 3-71 76-141 (177)
37 KOG0532 Leucine-rich repeat (L 97.6 4.4E-06 9.5E-11 71.4 -2.7 60 3-65 188-247 (722)
38 KOG1259 Nischarin, modulator o 97.6 1.9E-05 4.1E-10 63.2 0.2 58 3-63 306-363 (490)
39 KOG1644 U2-associated snRNP A' 97.5 0.00011 2.4E-09 55.5 4.1 82 4-87 42-125 (233)
40 KOG0531 Protein phosphatase 1, 97.5 5.8E-05 1.2E-09 63.5 2.6 60 3-65 94-153 (414)
41 cd00116 LRR_RI Leucine-rich re 97.5 2.1E-05 4.5E-10 63.1 -0.5 62 4-65 81-150 (319)
42 cd00116 LRR_RI Leucine-rich re 97.5 2.7E-05 5.9E-10 62.4 0.0 62 5-66 109-179 (319)
43 PF00560 LRR_1: Leucine Rich R 97.0 0.0002 4.3E-09 34.5 0.4 19 6-25 2-20 (22)
44 KOG1859 Leucine-rich repeat pr 96.9 6.8E-05 1.5E-09 66.1 -3.4 59 5-66 165-223 (1096)
45 KOG0531 Protein phosphatase 1, 96.8 0.00046 9.9E-09 58.0 0.9 82 3-87 71-152 (414)
46 PF00560 LRR_1: Leucine Rich R 96.7 0.0004 8.7E-09 33.4 0.1 21 29-50 1-21 (22)
47 KOG4658 Apoptotic ATPase [Sign 96.7 0.00099 2.1E-08 61.1 2.2 86 3-89 544-632 (889)
48 KOG2739 Leucine-rich acidic nu 96.5 0.0022 4.8E-08 50.1 2.7 42 24-65 61-104 (260)
49 KOG2739 Leucine-rich acidic nu 96.3 0.0031 6.6E-08 49.3 2.4 63 2-66 63-130 (260)
50 KOG3207 Beta-tubulin folding c 96.1 0.0032 6.9E-08 52.7 2.0 62 3-65 245-314 (505)
51 KOG3207 Beta-tubulin folding c 96.0 0.0017 3.7E-08 54.3 -0.0 87 3-89 171-260 (505)
52 PF13504 LRR_7: Leucine rich r 95.5 0.0078 1.7E-07 26.9 1.2 13 5-17 2-14 (17)
53 PF13504 LRR_7: Leucine rich r 95.5 0.0074 1.6E-07 27.0 1.0 13 29-41 2-14 (17)
54 KOG1644 U2-associated snRNP A' 95.3 0.021 4.5E-07 43.5 3.5 75 8-86 23-99 (233)
55 smart00370 LRR Leucine-rich re 94.8 0.023 4.9E-07 28.1 1.7 14 4-17 2-15 (26)
56 smart00369 LRR_TYP Leucine-ric 94.8 0.023 4.9E-07 28.1 1.7 14 4-17 2-15 (26)
57 smart00369 LRR_TYP Leucine-ric 94.6 0.031 6.7E-07 27.6 1.9 20 27-47 1-20 (26)
58 smart00370 LRR Leucine-rich re 94.6 0.031 6.7E-07 27.6 1.9 20 27-47 1-20 (26)
59 KOG0473 Leucine-rich repeat pr 94.6 0.0013 2.8E-08 51.1 -4.7 60 4-65 65-124 (326)
60 KOG0473 Leucine-rich repeat pr 94.4 0.001 2.2E-08 51.7 -5.6 82 3-86 41-122 (326)
61 KOG2982 Uncharacterized conser 94.2 0.011 2.3E-07 47.7 -0.5 61 4-64 71-133 (418)
62 KOG2123 Uncharacterized conser 94.1 0.0058 1.3E-07 48.7 -2.2 66 2-70 39-106 (388)
63 PRK15386 type III secretion pr 93.3 0.15 3.2E-06 43.0 4.7 53 3-62 51-104 (426)
64 KOG2982 Uncharacterized conser 92.8 0.084 1.8E-06 42.7 2.4 64 2-65 95-159 (418)
65 smart00364 LRR_BAC Leucine-ric 91.0 0.15 3.3E-06 25.4 1.3 17 29-46 3-19 (26)
66 KOG3665 ZYG-1-like serine/thre 90.5 0.14 3E-06 46.2 1.6 58 3-62 147-205 (699)
67 KOG3665 ZYG-1-like serine/thre 89.9 0.13 2.8E-06 46.3 0.9 39 27-65 147-186 (699)
68 PRK15386 type III secretion pr 89.7 0.53 1.1E-05 39.8 4.3 31 5-38 73-104 (426)
69 PF08693 SKG6: Transmembrane a 88.1 0.44 9.5E-06 26.4 1.8 25 126-150 12-36 (40)
70 PF01102 Glycophorin_A: Glycop 87.7 0.36 7.7E-06 33.7 1.7 20 126-145 64-83 (122)
71 PF13516 LRR_6: Leucine Rich r 87.0 0.052 1.1E-06 26.3 -2.1 11 30-40 4-14 (24)
72 smart00365 LRR_SD22 Leucine-ri 86.4 0.57 1.2E-05 23.3 1.6 14 4-17 2-15 (26)
73 COG5238 RNA1 Ran GTPase-activa 86.0 0.52 1.1E-05 37.8 1.9 38 27-64 91-132 (388)
74 KOG1909 Ran GTPase-activating 85.7 0.23 5E-06 40.7 -0.1 62 4-65 185-254 (382)
75 smart00368 LRR_RI Leucine rich 85.2 0.66 1.4E-05 23.3 1.5 13 5-17 3-15 (28)
76 PF04478 Mid2: Mid2 like cell 85.2 1 2.2E-05 32.5 3.0 11 126-136 53-63 (154)
77 TIGR00864 PCC polycystin catio 83.7 0.63 1.4E-05 47.4 1.8 32 34-65 1-32 (2740)
78 PF04478 Mid2: Mid2 like cell 83.3 0.86 1.9E-05 32.9 1.9 22 127-148 50-71 (154)
79 KOG2123 Uncharacterized conser 82.0 0.066 1.4E-06 42.9 -4.5 79 3-86 18-99 (388)
80 PF02439 Adeno_E3_CR2: Adenovi 80.4 1.8 3.9E-05 23.6 2.0 13 127-139 8-20 (38)
81 PF15102 TMEM154: TMEM154 prot 79.7 1.4 2.9E-05 31.7 1.9 10 146-155 79-88 (146)
82 KOG1909 Ran GTPase-activating 79.4 0.74 1.6E-05 37.9 0.5 61 4-65 92-170 (382)
83 COG5238 RNA1 Ran GTPase-activa 79.2 3 6.6E-05 33.6 3.8 63 2-65 90-170 (388)
84 PTZ00382 Variant-specific surf 77.8 1.6 3.6E-05 29.1 1.7 13 126-138 66-78 (96)
85 KOG2120 SCF ubiquitin ligase, 77.4 0.89 1.9E-05 37.0 0.4 37 26-62 311-348 (419)
86 PF13306 LRR_5: Leucine rich r 76.6 4.9 0.00011 27.3 4.0 56 2-61 10-67 (129)
87 PF13306 LRR_5: Leucine rich r 71.3 6.6 0.00014 26.6 3.6 58 2-62 33-91 (129)
88 PF07204 Orthoreo_P10: Orthore 71.0 4.2 9E-05 26.9 2.3 28 126-153 42-69 (98)
89 PF08374 Protocadherin: Protoc 69.8 5.6 0.00012 30.5 3.1 23 126-148 38-60 (221)
90 PF02009 Rifin_STEVOR: Rifin/s 67.3 4.2 9E-05 32.9 2.1 13 129-141 259-271 (299)
91 PF12877 DUF3827: Domain of un 66.6 4.9 0.00011 35.7 2.5 27 124-150 268-294 (684)
92 KOG3763 mRNA export factor TAP 65.0 3.7 8E-05 35.9 1.4 14 4-17 218-231 (585)
93 KOG2120 SCF ubiquitin ligase, 61.3 0.48 1E-05 38.5 -4.2 55 6-60 187-242 (419)
94 PF05454 DAG1: Dystroglycan (D 59.1 3.1 6.7E-05 33.5 0.0 23 130-152 152-174 (290)
95 PF13268 DUF4059: Protein of u 58.1 12 0.00025 23.5 2.4 33 143-175 23-55 (72)
96 PF12191 stn_TNFRSF12A: Tumour 57.9 3.4 7.5E-05 28.8 0.1 32 126-157 79-110 (129)
97 TIGR00864 PCC polycystin catio 57.3 7.4 0.00016 40.3 2.2 31 10-41 1-32 (2740)
98 PF01034 Syndecan: Syndecan do 56.4 3.8 8.1E-05 25.1 0.0 12 127-138 14-25 (64)
99 PF01102 Glycophorin_A: Glycop 56.3 8.5 0.00018 26.9 1.8 22 126-148 68-89 (122)
100 PTZ00046 rifin; Provisional 56.3 9 0.0002 31.8 2.2 14 130-143 319-332 (358)
101 TIGR01477 RIFIN variant surfac 54.6 10 0.00022 31.4 2.2 12 130-141 314-325 (353)
102 PF01299 Lamp: Lysosome-associ 53.0 6.7 0.00014 31.7 1.0 7 84-90 222-228 (306)
103 PF06697 DUF1191: Protein of u 52.8 46 0.00099 26.7 5.6 16 126-141 213-229 (278)
104 PF14610 DUF4448: Protein of u 50.9 8.7 0.00019 28.7 1.3 18 127-144 158-175 (189)
105 PF12768 Rax2: Cortical protei 50.5 16 0.00034 29.4 2.7 28 130-157 235-262 (281)
106 KOG3763 mRNA export factor TAP 47.6 8.7 0.00019 33.7 0.9 62 26-90 216-284 (585)
107 PF04971 Lysis_S: Lysis protei 47.3 18 0.0004 22.4 2.0 27 126-152 33-59 (68)
108 PRK00523 hypothetical protein; 46.9 20 0.00044 22.5 2.2 16 143-158 20-35 (72)
109 PF08374 Protocadherin: Protoc 45.5 53 0.0011 25.3 4.7 36 121-156 37-72 (221)
110 PRK01844 hypothetical protein; 45.1 27 0.00059 21.9 2.6 14 145-158 21-34 (72)
111 PF03302 VSP: Giardia variant- 43.1 38 0.00082 28.6 4.0 12 126-137 367-378 (397)
112 PF15179 Myc_target_1: Myc tar 42.5 18 0.0004 27.0 1.8 24 127-150 25-48 (197)
113 smart00367 LRR_CC Leucine-rich 40.8 18 0.00039 17.4 1.1 11 4-14 2-12 (26)
114 PF13908 Shisa: Wnt and FGF in 40.4 20 0.00043 26.5 1.8 10 127-136 80-89 (179)
115 TIGR02976 phageshock_pspB phag 40.4 38 0.00083 21.5 2.8 12 142-153 20-31 (75)
116 PHA03099 epidermal growth fact 39.6 22 0.00047 25.1 1.7 28 128-155 102-129 (139)
117 PF15102 TMEM154: TMEM154 prot 38.7 28 0.0006 25.1 2.2 32 128-159 58-89 (146)
118 PF05808 Podoplanin: Podoplani 37.9 11 0.00023 27.6 0.0 31 126-156 129-160 (162)
119 PRK11677 hypothetical protein; 37.5 91 0.002 22.1 4.6 7 133-139 8-14 (134)
120 PF14991 MLANA: Protein melan- 35.8 11 0.00024 25.8 -0.2 16 140-155 39-54 (118)
121 PF14584 DUF4446: Protein of u 32.1 50 0.0011 23.9 2.7 10 151-160 27-36 (151)
122 PF15145 DUF4577: Domain of un 30.8 1.8E+02 0.0039 20.0 6.0 10 128-137 64-73 (128)
123 PTZ00208 65 kDa invariant surf 30.8 26 0.00057 29.5 1.1 29 127-155 388-416 (436)
124 PF07213 DAP10: DAP10 membrane 30.1 37 0.00081 21.7 1.5 25 126-150 34-59 (79)
125 PF06295 DUF1043: Protein of u 29.1 1.9E+02 0.0041 20.2 5.1 10 129-138 4-13 (128)
126 COG3115 ZipA Cell division pro 26.8 46 0.001 26.9 1.9 25 133-157 11-35 (324)
127 PF12606 RELT: Tumour necrosis 26.6 51 0.0011 19.1 1.6 12 151-162 24-35 (50)
128 PHA02662 ORF131 putative membr 26.6 47 0.001 25.6 1.8 19 126-144 187-205 (226)
129 COG3105 Uncharacterized protei 25.8 2.2E+02 0.0049 20.1 4.8 17 130-146 10-26 (138)
130 PRK01741 cell division protein 24.9 74 0.0016 26.2 2.7 32 130-161 7-38 (332)
131 PF06667 PspB: Phage shock pro 24.7 97 0.0021 19.6 2.7 11 142-152 20-30 (75)
132 PF15012 DUF4519: Domain of un 24.6 39 0.00084 20.1 0.8 21 129-149 31-51 (56)
133 PF12301 CD99L2: CD99 antigen 24.1 56 0.0012 24.2 1.8 13 146-158 134-146 (169)
134 PF14914 LRRC37AB_C: LRRC37A/B 23.7 68 0.0015 23.2 2.0 23 128-150 122-144 (154)
135 TIGR02205 septum_zipA cell div 22.6 49 0.0011 26.7 1.3 12 146-157 22-33 (284)
136 PF05337 CSF-1: Macrophage col 20.6 33 0.00072 27.4 0.0 20 135-154 235-254 (285)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=145.67 Aligned_cols=97 Identities=42% Similarity=0.687 Sum_probs=83.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCcc--ccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGT--QLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~--~l~~l~~ 79 (184)
+++.|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|++++|+++|.+|... ....+..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 56889999999999999999999999999999999999999999999999999999999999999999762 2234456
Q ss_pred ccccCCcCCCCCCCCCCCC
Q 045886 80 SVYAGNLELCGLPLANMCP 98 (184)
Q Consensus 80 ~~~~~N~~lc~~~~~~~C~ 98 (184)
+++.+|+.+|+.+....|.
T Consensus 520 l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 520 FNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred EEecCCccccCCCCCCCCc
Confidence 7789999999876545563
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.60 E-value=2.8e-15 Score=136.97 Aligned_cols=90 Identities=37% Similarity=0.600 Sum_probs=66.5
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
++++|++|+|++|.++|.+|..+..+++|+.|++++|+++|.+|..+..+++|+.+++++|++.|.+|..+.+.++....
T Consensus 521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 600 (968)
T PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600 (968)
T ss_pred CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence 45667777777777777777777777777777777777777777777777777777777777777777766666676677
Q ss_pred ccCCcCCCCC
Q 045886 82 YAGNLELCGL 91 (184)
Q Consensus 82 ~~~N~~lc~~ 91 (184)
+.||+.+|+.
T Consensus 601 ~~~n~~lc~~ 610 (968)
T PLN00113 601 VAGNIDLCGG 610 (968)
T ss_pred hcCCccccCC
Confidence 7788888764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=1.4e-12 Score=119.30 Aligned_cols=91 Identities=37% Similarity=0.496 Sum_probs=78.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|+.|+|++|++.|.+|..+.++++|+.|++++|.++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+..+
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 4667888999999999899999999999999999999999999999999999999999999999988876 567778888
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+|+..+..|
T Consensus 577 ~ls~N~l~~~~p 588 (968)
T PLN00113 577 NISHNHLHGSLP 588 (968)
T ss_pred eccCCcceeeCC
Confidence 898988776444
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=1.4e-12 Score=114.35 Aligned_cols=85 Identities=36% Similarity=0.495 Sum_probs=79.0
Q ss_pred CceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccC
Q 045886 6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAG 84 (184)
Q Consensus 6 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~ 84 (184)
++.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|.. ..+.+|..+++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678999999999999999999999999999999999999999999999999999999999999986 6788899999999
Q ss_pred CcCCCC
Q 045886 85 NLELCG 90 (184)
Q Consensus 85 N~~lc~ 90 (184)
|...+.
T Consensus 500 N~l~g~ 505 (623)
T PLN03150 500 NSLSGR 505 (623)
T ss_pred Cccccc
Confidence 876553
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=3.4e-11 Score=74.10 Aligned_cols=61 Identities=38% Similarity=0.456 Sum_probs=53.9
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCC
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNS 64 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l 64 (184)
++|+.|++++|+++...+..|..+++|++|++++|.++...|..|..+++|+++++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999944446789999999999999999966667899999999999999975
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.96 E-value=6.9e-11 Score=86.82 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=67.1
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC-CCCc-cccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK-IPLG-TQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~-~p~~-~~l~~l~~ 79 (184)
++.+|+.|++++|+++ .+|.+++.|+.|++|+++-|++. .+|..|+.++.|+.||+.+|+++.. .|.. ..++++..
T Consensus 54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 4678899999999999 89999999999999999999999 8999999999999999999998754 3332 33445555
Q ss_pred ccccCCcC
Q 045886 80 SVYAGNLE 87 (184)
Q Consensus 80 ~~~~~N~~ 87 (184)
++++.|.+
T Consensus 132 lyl~dndf 139 (264)
T KOG0617|consen 132 LYLGDNDF 139 (264)
T ss_pred HHhcCCCc
Confidence 55555544
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=5.7e-09 Score=77.52 Aligned_cols=82 Identities=34% Similarity=0.341 Sum_probs=37.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccc-cCCCCCCeeeccCCCCCCCCCC--ccccccCCc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSL-SQLSGLGVLDLSYNNSSGKIPL--GTQLQSFNA 79 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~-~~l~~L~~l~ls~N~l~g~~p~--~~~l~~l~~ 79 (184)
+..|+.|||++|.++ .++ .+..++.|+.|++++|+++ .+++.+ ..+++|+.|++++|++...-.- ...++.|..
T Consensus 41 l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 567899999999998 564 4778999999999999999 665555 4689999999999999753321 245677888
Q ss_pred ccccCCcC
Q 045886 80 SVYAGNLE 87 (184)
Q Consensus 80 ~~~~~N~~ 87 (184)
+++.|||.
T Consensus 118 L~L~~NPv 125 (175)
T PF14580_consen 118 LSLEGNPV 125 (175)
T ss_dssp EE-TT-GG
T ss_pred eeccCCcc
Confidence 88999985
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.71 E-value=5.8e-09 Score=85.14 Aligned_cols=93 Identities=28% Similarity=0.225 Sum_probs=80.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.|+.|+.|+|++|++++.-+.+|..+..++.|.|..|+|.-.--..|.++..|+.|+|.+|+++-.-|.. ..+.++..+
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 5789999999999999888888999999999999999998444467889999999999999999877765 456677788
Q ss_pred cccCCcCCCCCCCC
Q 045886 81 VYAGNLELCGLPLA 94 (184)
Q Consensus 81 ~~~~N~~lc~~~~~ 94 (184)
.+.+||+.|.|.+.
T Consensus 352 ~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 352 NLLSNPFNCNCRLA 365 (498)
T ss_pred ehccCcccCccchH
Confidence 89999999998654
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.63 E-value=4.2e-09 Score=77.52 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=70.6
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
++..++.|-||+|.++ .+|+.+..+.+|+.|++++|++. .+|.+++.++.|+.|+++-|++.-.+-..+.+..+..++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3566788999999999 89999999999999999999999 999999999999999999999985555556666666666
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+.-|.
T Consensus 109 ltynn 113 (264)
T KOG0617|consen 109 LTYNN 113 (264)
T ss_pred ccccc
Confidence 55443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.60 E-value=1.6e-08 Score=82.87 Aligned_cols=85 Identities=28% Similarity=0.371 Sum_probs=70.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc------------------------cccCCCCCCee
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS------------------------SLSQLSGLGVL 57 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~------------------------~~~~l~~L~~l 57 (184)
.++.|..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|. .+..|.+|..|
T Consensus 433 ~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 4678889999999988 89999999999999999999875 4443 25677888899
Q ss_pred eccCCCCCCCCCCccccccCCcccccCCcCC
Q 045886 58 DLSYNNSSGKIPLGTQLQSFNASVYAGNLEL 88 (184)
Q Consensus 58 ~ls~N~l~g~~p~~~~l~~l~~~~~~~N~~l 88 (184)
|+.+|.+...+|..+.++++.++.+.|||+-
T Consensus 511 DL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 511 DLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999877777788889999999999864
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=6.9e-08 Score=55.31 Aligned_cols=36 Identities=36% Similarity=0.593 Sum_probs=22.9
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCC
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFS 41 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~ 41 (184)
+|++|++++|+|+ .+|+.+++|++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666777777776 56666666666666666666666
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.52 E-value=1.4e-08 Score=83.24 Aligned_cols=83 Identities=25% Similarity=0.235 Sum_probs=69.0
Q ss_pred CCcCCceeeeccCCCCCCCCcccC-CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIG-ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~ 80 (184)
.+..|.+|+++.|+++ .+|.+.. .++++..||+..|+++ +.|+.+.-+.+|+.||+|+|.+++.++..+.+ .+..+
T Consensus 226 gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence 3455666666677776 6676644 7899999999999999 99999999999999999999999999887777 77788
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
.+.|||.
T Consensus 303 ~leGNPl 309 (565)
T KOG0472|consen 303 ALEGNPL 309 (565)
T ss_pred hhcCCch
Confidence 8899984
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.51 E-value=2.1e-08 Score=86.42 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=53.9
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc-cccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
|..|+.||||+|++. ..|..+..-.++-.|+||+|++. .||. -|.+++.|-.||||+|++...+|....+..+..+.
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 445566666666666 66666555556666666666666 5554 34566777777777777777777666666667777
Q ss_pred ccCCcC
Q 045886 82 YAGNLE 87 (184)
Q Consensus 82 ~~~N~~ 87 (184)
+++||.
T Consensus 180 Ls~NPL 185 (1255)
T KOG0444|consen 180 LSNNPL 185 (1255)
T ss_pred cCCChh
Confidence 777764
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.45 E-value=7.4e-08 Score=59.02 Aligned_cols=59 Identities=34% Similarity=0.385 Sum_probs=50.1
Q ss_pred CCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccCCc
Q 045886 28 TSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAGNL 86 (184)
Q Consensus 28 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~N~ 86 (184)
++|+.|++++|+++...+..|..+++|++|++++|+++...|.. ..+..+..+++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57899999999999444468899999999999999999777755 677788888888885
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.42 E-value=1.7e-08 Score=86.22 Aligned_cols=69 Identities=29% Similarity=0.177 Sum_probs=39.0
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCC------------------------cccccCCCCCCeee
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSI------------------------PSSLSQLSGLGVLD 58 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~------------------------P~~~~~l~~L~~l~ 58 (184)
|++|+.||||+|.|+...++.+...++|+.|+|+.|+++..- -..|..+.+|+.||
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 445555555555555455555555555555555555555222 22345566777777
Q ss_pred ccCCCCCCCCCCc
Q 045886 59 LSYNNSSGKIPLG 71 (184)
Q Consensus 59 ls~N~l~g~~p~~ 71 (184)
|++|.+++.+.+.
T Consensus 372 Lr~N~ls~~IEDa 384 (873)
T KOG4194|consen 372 LRSNELSWCIEDA 384 (873)
T ss_pred CcCCeEEEEEecc
Confidence 7777777666543
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.38 E-value=6.7e-08 Score=82.61 Aligned_cols=91 Identities=30% Similarity=0.328 Sum_probs=72.2
Q ss_pred CcCCceeeeccCCCCCCCCcc---cCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCCCCCCCccccccCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPK---IGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFN 78 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~---~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~ 78 (184)
+++|+.|||++|.+++.|-+. |.+|++|+.|++.+|++. .+| .+|..+..|++|||.+|.+...-|....-..|.
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk 442 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELK 442 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccchhh
Confidence 578889999999998776543 778999999999999999 566 588899999999999998887666653333666
Q ss_pred cccccCCcCCCCCCCC
Q 045886 79 ASVYAGNLELCGLPLA 94 (184)
Q Consensus 79 ~~~~~~N~~lc~~~~~ 94 (184)
.+.+....++|+|.+.
T Consensus 443 ~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 443 ELVMNSSSFLCDCQLK 458 (873)
T ss_pred hhhhcccceEEeccHH
Confidence 6777777889998654
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=4.8e-07 Score=51.80 Aligned_cols=38 Identities=42% Similarity=0.566 Sum_probs=33.2
Q ss_pred CCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 28 TSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 28 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
++|++|++++|+++ .+|..+.++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47999999999999 889889999999999999999873
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.30 E-value=6.4e-08 Score=86.10 Aligned_cols=86 Identities=33% Similarity=0.429 Sum_probs=62.5
Q ss_pred CCcCCceeeeccCCCCCCCCcc-cCCCCCCCEeeccCCcCCCCCccc----------------------ccCCCCCCeee
Q 045886 2 DLVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIPSS----------------------LSQLSGLGVLD 58 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~P~~----------------------~~~l~~L~~l~ 58 (184)
++..|+.|+|++|++. .+|.. +.++..|+.|+||+|+|+ .+|+. +.+++.|+.+|
T Consensus 381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD 458 (1081)
T ss_pred cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence 4567888888888887 66755 677888888888888877 66554 45677888889
Q ss_pred ccCCCCCCCC-CCccccccCCcccccCCcCCC
Q 045886 59 LSYNNSSGKI-PLGTQLQSFNASVYAGNLELC 89 (184)
Q Consensus 59 ls~N~l~g~~-p~~~~l~~l~~~~~~~N~~lc 89 (184)
++.|+|+... |....-..|..+++.||+++-
T Consensus 459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred cccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 9999887543 332223678888999998643
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=1.1e-07 Score=75.62 Aligned_cols=79 Identities=28% Similarity=0.271 Sum_probs=62.7
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
+.|+.||||+|.++ .+..+..-+|.++.|++|+|.+. .+ .++..+++|+.||+|+|.++...-....+.++..+.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 46889999999999 88888888999999999999999 55 44889999999999999997655444444444444444
Q ss_pred CC
Q 045886 84 GN 85 (184)
Q Consensus 84 ~N 85 (184)
+|
T Consensus 361 ~N 362 (490)
T KOG1259|consen 361 QN 362 (490)
T ss_pred hh
Confidence 44
No 20
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=6.6e-08 Score=68.65 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=65.5
Q ss_pred cCCceeeeccCCCCCCCCcccCC-CCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGE-LTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~-l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
..|+..+|++|.|. ..|+.|.. ++.++.|++++|.++ .+|..+..++.|+.+++++|.+...+.....+.++..++.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 45677899999999 78877765 458999999999999 8999999999999999999999876655555666666655
Q ss_pred cCCc
Q 045886 83 AGNL 86 (184)
Q Consensus 83 ~~N~ 86 (184)
.+|.
T Consensus 131 ~~na 134 (177)
T KOG4579|consen 131 PENA 134 (177)
T ss_pred CCCc
Confidence 5543
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=3.8e-07 Score=67.76 Aligned_cols=82 Identities=30% Similarity=0.364 Sum_probs=26.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccC-CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIG-ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~ 79 (184)
+...++.|+|++|.|+ .+. .++ .+.+|+.||+++|.++ .++ .+..++.|+.|++++|+++...+.. ..+..+..
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 4456889999999999 554 465 6889999999999999 664 5888999999999999998643322 24678888
Q ss_pred ccccCCcC
Q 045886 80 SVYAGNLE 87 (184)
Q Consensus 80 ~~~~~N~~ 87 (184)
+++.+|..
T Consensus 93 L~L~~N~I 100 (175)
T PF14580_consen 93 LYLSNNKI 100 (175)
T ss_dssp EE-TTS--
T ss_pred EECcCCcC
Confidence 88888764
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.15 E-value=2.3e-07 Score=82.64 Aligned_cols=88 Identities=26% Similarity=0.253 Sum_probs=68.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc-cccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~ 80 (184)
.+..|+.|++.+|.++...-+-+.++.+|+.|+|++|+|. .+|+ .+.++..|+.|+||+|+|+........+..+..+
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 3567889999999999888788999999999999999999 7886 5778999999999999998543222444455555
Q ss_pred cccCCcCCCC
Q 045886 81 VYAGNLELCG 90 (184)
Q Consensus 81 ~~~~N~~lc~ 90 (184)
...+|..+|-
T Consensus 436 ~ahsN~l~~f 445 (1081)
T KOG0618|consen 436 RAHSNQLLSF 445 (1081)
T ss_pred hhcCCceeec
Confidence 5555555553
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.10 E-value=1e-06 Score=76.35 Aligned_cols=84 Identities=35% Similarity=0.389 Sum_probs=68.2
Q ss_pred CCcCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc--cccccCC
Q 045886 2 DLVGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG--TQLQSFN 78 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~--~~l~~l~ 78 (184)
.|+.|+.+++..|++. .-+|+.+..|..|..||||+|+|+ +.|..+....++-.|+||+|++. .||.. ..+..+-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHh
Confidence 5677888888888886 458888999999999999999999 89999999999999999999997 56654 3455555
Q ss_pred cccccCCcC
Q 045886 79 ASVYAGNLE 87 (184)
Q Consensus 79 ~~~~~~N~~ 87 (184)
.++++.|..
T Consensus 154 fLDLS~NrL 162 (1255)
T KOG0444|consen 154 FLDLSNNRL 162 (1255)
T ss_pred hhccccchh
Confidence 666777653
No 24
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.4e-07 Score=82.41 Aligned_cols=85 Identities=34% Similarity=0.391 Sum_probs=56.0
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccc----------------------ccCCCCCCeeeccC
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS----------------------LSQLSGLGVLDLSY 61 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~----------------------~~~l~~L~~l~ls~ 61 (184)
+.|+.|||++|+++ ... .+..++.|++|||+.|+|. .+|.- +.++.+|+.||+++
T Consensus 187 ~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 45667777777776 333 5666777777777777776 55531 44566777778888
Q ss_pred CCCCCCCCC--ccccccCCcccccCCcCCCCC
Q 045886 62 NNSSGKIPL--GTQLQSFNASVYAGNLELCGL 91 (184)
Q Consensus 62 N~l~g~~p~--~~~l~~l~~~~~~~N~~lc~~ 91 (184)
|-+++--.- ...+..|..+.+.|||.-|.+
T Consensus 264 Nll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 264 NLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 777653221 134566777889999987753
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.91 E-value=6.4e-06 Score=73.88 Aligned_cols=76 Identities=29% Similarity=0.267 Sum_probs=45.1
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~ 82 (184)
.+|+.|+|++|+|+ .+|.. .++|+.|++++|+|+ .+|... .+|+.|++++|+++. +|.. ..+..+..+++
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCcccc-cChHHhhccCCCeEEC
Confidence 35667777777777 45543 245667777777776 455432 345666777777663 4432 44555666666
Q ss_pred cCCcCC
Q 045886 83 AGNLEL 88 (184)
Q Consensus 83 ~~N~~l 88 (184)
.+|+..
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 666643
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.91 E-value=3.2e-05 Score=72.79 Aligned_cols=82 Identities=28% Similarity=0.318 Sum_probs=45.4
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
+++|+.|+|+++..-+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|....+++|..+.+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L 711 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL 711 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence 45556666655443334543 55566666666666554446666666666666666666544444554434455555555
Q ss_pred cCC
Q 045886 83 AGN 85 (184)
Q Consensus 83 ~~N 85 (184)
.+|
T Consensus 712 sgc 714 (1153)
T PLN03210 712 SGC 714 (1153)
T ss_pred CCC
Confidence 544
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.83 E-value=2e-05 Score=70.84 Aligned_cols=58 Identities=29% Similarity=0.303 Sum_probs=25.0
Q ss_pred CceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC
Q 045886 6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68 (184)
Q Consensus 6 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~ 68 (184)
|+.|++++|+|+ .+|... ..|+.|++++|+|+ .+|..+..+++|+.+++++|+|++.+
T Consensus 404 L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 404 LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 444444444444 233321 23344444444444 44444444444444444444444433
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.75 E-value=5e-06 Score=68.33 Aligned_cols=84 Identities=23% Similarity=0.174 Sum_probs=61.6
Q ss_pred CceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeecc-CCCCCCCCCCc-cccccCCccccc
Q 045886 6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS-YNNSSGKIPLG-TQLQSFNASVYA 83 (184)
Q Consensus 6 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls-~N~l~g~~p~~-~~l~~l~~~~~~ 83 (184)
-..++|..|+|+-..|..|+.+++|+.||||+|.|+-.-|.+|..+.+|..|-+- +|+++...-.. ..+.++..+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl-- 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL-- 146 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh--
Confidence 4679999999994444569999999999999999998889999999988777554 58887443322 3444444433
Q ss_pred CCcCCCCC
Q 045886 84 GNLELCGL 91 (184)
Q Consensus 84 ~N~~lc~~ 91 (184)
-|++.|.|
T Consensus 147 lNan~i~C 154 (498)
T KOG4237|consen 147 LNANHINC 154 (498)
T ss_pred cChhhhcc
Confidence 45555554
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.74 E-value=1.7e-05 Score=71.19 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=36.1
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK 67 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~ 67 (184)
++|+.|++++|.++ .+|..+. ++|+.|++++|+|+ .+|..+. ++|+.|++++|+|+..
T Consensus 325 ~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 325 PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL 382 (754)
T ss_pred ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC
Confidence 35666777777776 4565443 46777777777766 5665442 4666666666666643
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.71 E-value=6.8e-05 Score=67.41 Aligned_cols=13 Identities=46% Similarity=0.391 Sum_probs=5.8
Q ss_pred CCCeeeccCCCCC
Q 045886 53 GLGVLDLSYNNSS 65 (184)
Q Consensus 53 ~L~~l~ls~N~l~ 65 (184)
+|+.|++++|+++
T Consensus 263 ~L~~L~Ls~N~L~ 275 (754)
T PRK15370 263 ALQSLDLFHNKIS 275 (754)
T ss_pred CCCEEECcCCccC
Confidence 3444444444444
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.69 E-value=0.00011 Score=69.25 Aligned_cols=84 Identities=23% Similarity=0.232 Sum_probs=57.6
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+.+|+.|+|++|++. .+|..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|.. ..+.+|..++
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 356777777777777 6777777777888888877654446664 667778888888776655556654 4566666677
Q ss_pred ccCCcCC
Q 045886 82 YAGNLEL 88 (184)
Q Consensus 82 ~~~N~~l 88 (184)
+.++..+
T Consensus 688 L~~c~~L 694 (1153)
T PLN03210 688 MSRCENL 694 (1153)
T ss_pred CCCCCCc
Confidence 7665443
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.68 E-value=1.7e-05 Score=72.32 Aligned_cols=80 Identities=34% Similarity=0.381 Sum_probs=65.0
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.++.|.+|||++|.=-+.+|.+++.|.+|++|++++..++ .+|..+.++..|.+||+..+.-...+|.. ..+.+|+.+
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 4778999999998766699999999999999999999999 89999999999999999987765555544 235566555
Q ss_pred cc
Q 045886 81 VY 82 (184)
Q Consensus 81 ~~ 82 (184)
.+
T Consensus 648 ~l 649 (889)
T KOG4658|consen 648 RL 649 (889)
T ss_pred Ee
Confidence 43
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.68 E-value=1.3e-05 Score=66.68 Aligned_cols=79 Identities=34% Similarity=0.383 Sum_probs=50.1
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccccC
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAG 84 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~~ 84 (184)
+|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.+++++|+++...+.......+..+.+.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 5677777777777 66666677777777777777777 666655566777777777777764443322223344444444
Q ss_pred C
Q 045886 85 N 85 (184)
Q Consensus 85 N 85 (184)
|
T Consensus 219 N 219 (394)
T COG4886 219 N 219 (394)
T ss_pred C
Confidence 4
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.66 E-value=4e-06 Score=71.70 Aligned_cols=75 Identities=28% Similarity=0.345 Sum_probs=51.3
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~ 79 (184)
++..|++|||+.|+++ .+|..+..|+ |+.|-+++|+++ .+|+.++.++.|..||.+.|++...++....+.++..
T Consensus 119 ~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 4566777777777777 7777766666 777777777777 6777777777777777777777655554444444333
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.65 E-value=2.6e-05 Score=64.79 Aligned_cols=83 Identities=41% Similarity=0.525 Sum_probs=69.9
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCC-CCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELT-SLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
++.++.|++.+|.++ .+|+....+. +|+.|++++|++. .+|..+..++.|+.|++++|+++...+.......+..+.
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 356889999999999 8998888885 9999999999999 888889999999999999999996665443666677777
Q ss_pred ccCCcC
Q 045886 82 YAGNLE 87 (184)
Q Consensus 82 ~~~N~~ 87 (184)
+++|..
T Consensus 193 ls~N~i 198 (394)
T COG4886 193 LSGNKI 198 (394)
T ss_pred ccCCcc
Confidence 777654
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=3.7e-06 Score=59.87 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=58.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG 71 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~ 71 (184)
++.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|..+..+.+|-+||..+|.+. ++|..
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 346788999999999 99999999999999999999999 88999999999999999999886 44443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.62 E-value=4.4e-06 Score=71.44 Aligned_cols=60 Identities=32% Similarity=0.416 Sum_probs=32.7
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
+.+|+.|++..|++. .+|+++..|+ |..||+|+|+++ .+|..|..|..|++|-|.+|.|+
T Consensus 188 l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 344445555555555 4555544333 555566666655 55555566666666666666555
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.55 E-value=1.9e-05 Score=63.16 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=38.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~ 63 (184)
++.++.|++|+|.+. .+.. +..|++|++||||+|.++ .+-..=..+.+.+.|.++.|.
T Consensus 306 ~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred ccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 356788999999988 5543 778899999999999887 443332333344444444443
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00011 Score=55.45 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=60.6
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC--CCCccccccCCccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK--IPLGTQLQSFNASV 81 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~--~p~~~~l~~l~~~~ 81 (184)
.....+||++|.+. .++ .|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|.+... +.....+..|..+.
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45668999999987 443 477899999999999999954444333457899999999998743 22334566777788
Q ss_pred ccCCcC
Q 045886 82 YAGNLE 87 (184)
Q Consensus 82 ~~~N~~ 87 (184)
+.|||-
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 888873
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=5.8e-05 Score=63.46 Aligned_cols=60 Identities=37% Similarity=0.388 Sum_probs=36.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
+++|..|++.+|++. .+...+..+++|++|++++|.++ .+. .+..++.|+.|++++|.++
T Consensus 94 ~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch
Confidence 456666777777766 44333556666777777777666 332 2455555666666666665
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.48 E-value=2.1e-05 Score=63.07 Aligned_cols=62 Identities=27% Similarity=0.273 Sum_probs=27.6
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCC---CCEeeccCCcCCC----CCcccccCC-CCCCeeeccCCCCC
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTS---LDFLDLSRNLFSG----SIPSSLSQL-SGLGVLDLSYNNSS 65 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~---L~~L~ls~N~l~g----~~P~~~~~l-~~L~~l~ls~N~l~ 65 (184)
..|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.+++++|.++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 34555555555554433333333333 5555555555442 111223333 44555555555544
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.46 E-value=2.7e-05 Score=62.38 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=34.6
Q ss_pred CCceeeeccCCCCC----CCCcccCCC-CCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886 5 GLIAVNLSRNNLTG----PITPKIGEL-TSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g----~~p~~~~~l-~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
.|++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+..|+.|++++|.+++
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 36666776666652 222234444 5666666666666632 22234445566666666666653
No 43
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.03 E-value=0.0002 Score=34.49 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=10.5
Q ss_pred CceeeeccCCCCCCCCcccC
Q 045886 6 LIAVNLSRNNLTGPITPKIG 25 (184)
Q Consensus 6 L~~L~Ls~N~l~g~~p~~~~ 25 (184)
|++|||++|+|+ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455566666555 5555443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.88 E-value=6.8e-05 Score=66.15 Aligned_cols=59 Identities=34% Similarity=0.448 Sum_probs=51.2
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
.|...+.++|.+. ....++.-++.|++|||++|+++ ..- .+..++.|++||+++|.|.-
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~ 223 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRH 223 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhcc
Confidence 3566788999998 78888888999999999999999 553 78899999999999999973
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.78 E-value=0.00046 Score=58.05 Aligned_cols=82 Identities=35% Similarity=0.431 Sum_probs=63.6
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
+..++.+++..|.+. .+-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|+++...+- ..+..+..+.+
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l-~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGL-STLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccch-hhccchhhhee
Confidence 456777888889888 44455788999999999999999 5555478899999999999999865543 34444667777
Q ss_pred cCCcC
Q 045886 83 AGNLE 87 (184)
Q Consensus 83 ~~N~~ 87 (184)
.+|+.
T Consensus 148 ~~N~i 152 (414)
T KOG0531|consen 148 SGNLI 152 (414)
T ss_pred ccCcc
Confidence 77764
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.73 E-value=0.0004 Score=33.40 Aligned_cols=21 Identities=57% Similarity=0.857 Sum_probs=15.6
Q ss_pred CCCEeeccCCcCCCCCcccccC
Q 045886 29 SLDFLDLSRNLFSGSIPSSLSQ 50 (184)
Q Consensus 29 ~L~~L~ls~N~l~g~~P~~~~~ 50 (184)
+|++||+++|+++ .+|++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4678888888888 77776654
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.66 E-value=0.00099 Score=61.06 Aligned_cols=86 Identities=29% Similarity=0.186 Sum_probs=68.7
Q ss_pred CcCCceeeeccCC--CCCCCCcc-cCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCc
Q 045886 3 LVGLIAVNLSRNN--LTGPITPK-IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNA 79 (184)
Q Consensus 3 l~~L~~L~Ls~N~--l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~ 79 (184)
.+.|+.|-+.+|. +. .++.. |..|+.|..|||++|.=-+.+|..++++-+|++||++...++..++....++.|..
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 3467888888886 55 55544 77899999999999887779999999999999999999999966655577777777
Q ss_pred ccccCCcCCC
Q 045886 80 SVYAGNLELC 89 (184)
Q Consensus 80 ~~~~~N~~lc 89 (184)
+++..+..+.
T Consensus 623 Lnl~~~~~l~ 632 (889)
T KOG4658|consen 623 LNLEVTGRLE 632 (889)
T ss_pred eccccccccc
Confidence 7766554444
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.47 E-value=0.0022 Score=50.13 Aligned_cols=42 Identities=33% Similarity=0.370 Sum_probs=22.6
Q ss_pred cCCCCCCCEeeccCC--cCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 24 IGELTSLDFLDLSRN--LFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 24 ~~~l~~L~~L~ls~N--~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
+..|++|+.|++|.| +..+.++.....+++|++++++.|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444555555666666 444444444444455666666665554
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0031 Score=49.34 Aligned_cols=63 Identities=29% Similarity=0.339 Sum_probs=50.4
Q ss_pred CCcCCceeeeccC--CCCCCCCcccCCCCCCCEeeccCCcCCCCCccc---ccCCCCCCeeeccCCCCCC
Q 045886 2 DLVGLIAVNLSRN--NLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS---LSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 2 ~l~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~---~~~l~~L~~l~ls~N~l~g 66 (184)
.|++|+.|.+|.| ++++.++...-.+++|+++++++|++. . +++ +..+.+|..||+.++.-..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCccc
Confidence 3678999999999 777777777777899999999999998 2 333 4556788899999887665
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0032 Score=52.74 Aligned_cols=62 Identities=32% Similarity=0.391 Sum_probs=40.1
Q ss_pred CcCCceeeeccCCCCCCCC--cccCCCCCCCEeeccCCcCCCC-Cccc-----ccCCCCCCeeeccCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPIT--PKIGELTSLDFLDLSRNLFSGS-IPSS-----LSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~ls~N~l~g~-~P~~-----~~~l~~L~~l~ls~N~l~ 65 (184)
++.|+.|||++|++- ..+ ...+.++.|+.|+++.+.+... +|+. ...+++|++|+++.|++.
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 355777777777766 444 3356677777777777776521 3333 345677888888888774
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0017 Score=54.29 Aligned_cols=87 Identities=26% Similarity=0.118 Sum_probs=37.3
Q ss_pred CcCCceeeeccCCCCCCCCcc-cCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCC-CCCCCccccccCCc
Q 045886 3 LVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSS-GKIPLGTQLQSFNA 79 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~-g~~p~~~~l~~l~~ 79 (184)
|++|+.|+||.|.+.-..... -..+++|+.|.++.+.|+..-- .-...+|+|+.|+++.|... -..-....++.+..
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 444555555555444111111 1123344444444444432110 11233566666666666321 11112234555666
Q ss_pred ccccCCcCCC
Q 045886 80 SVYAGNLELC 89 (184)
Q Consensus 80 ~~~~~N~~lc 89 (184)
+++++|+.+-
T Consensus 251 LdLs~N~li~ 260 (505)
T KOG3207|consen 251 LDLSNNNLID 260 (505)
T ss_pred ccccCCcccc
Confidence 6666666544
No 52
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.55 E-value=0.0078 Score=26.94 Aligned_cols=13 Identities=46% Similarity=0.608 Sum_probs=5.0
Q ss_pred CCceeeeccCCCC
Q 045886 5 GLIAVNLSRNNLT 17 (184)
Q Consensus 5 ~L~~L~Ls~N~l~ 17 (184)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.49 E-value=0.0074 Score=27.01 Aligned_cols=13 Identities=46% Similarity=0.582 Sum_probs=6.3
Q ss_pred CCCEeeccCCcCC
Q 045886 29 SLDFLDLSRNLFS 41 (184)
Q Consensus 29 ~L~~L~ls~N~l~ 41 (184)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666665
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.33 E-value=0.021 Score=43.47 Aligned_cols=75 Identities=23% Similarity=0.293 Sum_probs=54.1
Q ss_pred eeeeccCCCCCCCCcccC-CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCcc-ccccCCcccccCC
Q 045886 8 AVNLSRNNLTGPITPKIG-ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGT-QLQSFNASVYAGN 85 (184)
Q Consensus 8 ~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~-~l~~l~~~~~~~N 85 (184)
.++|.+.++. .+-. ++ .+.+...+||++|++. .+ +.|..++.|..|.+.+|+++..-|... .+..+..+.+.+|
T Consensus 23 e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 23 ELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4666666654 2221 22 3457889999999998 55 347889999999999999998877763 4455777777776
Q ss_pred c
Q 045886 86 L 86 (184)
Q Consensus 86 ~ 86 (184)
.
T Consensus 99 s 99 (233)
T KOG1644|consen 99 S 99 (233)
T ss_pred c
Confidence 4
No 55
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.76 E-value=0.023 Score=28.14 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=6.7
Q ss_pred cCCceeeeccCCCC
Q 045886 4 VGLIAVNLSRNNLT 17 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~ 17 (184)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444555555444
No 56
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.76 E-value=0.023 Score=28.14 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=6.7
Q ss_pred cCCceeeeccCCCC
Q 045886 4 VGLIAVNLSRNNLT 17 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~ 17 (184)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444555555444
No 57
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.60 E-value=0.031 Score=27.63 Aligned_cols=20 Identities=50% Similarity=0.664 Sum_probs=14.1
Q ss_pred CCCCCEeeccCCcCCCCCccc
Q 045886 27 LTSLDFLDLSRNLFSGSIPSS 47 (184)
Q Consensus 27 l~~L~~L~ls~N~l~g~~P~~ 47 (184)
|++|++|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456778888888887 66653
No 58
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.60 E-value=0.031 Score=27.63 Aligned_cols=20 Identities=50% Similarity=0.664 Sum_probs=14.1
Q ss_pred CCCCCEeeccCCcCCCCCccc
Q 045886 27 LTSLDFLDLSRNLFSGSIPSS 47 (184)
Q Consensus 27 l~~L~~L~ls~N~l~g~~P~~ 47 (184)
|++|++|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456778888888887 66653
No 59
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.58 E-value=0.0013 Score=51.07 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=46.2
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
+.|..||++.|++. .+|.+++++..+.++++-+|.++ ..|-++...+.++++++..|.|.
T Consensus 65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 34566777777777 77888888888888888888888 77888888888888888777664
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.43 E-value=0.001 Score=51.67 Aligned_cols=82 Identities=21% Similarity=0.125 Sum_probs=64.4
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
....+.||++.|++. .+...|+-++.|..||++.|++. .+|..+.++..+..+++-+|+++..+-+..+...+.....
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 345678999999998 77778888999999999999999 8999999999999999999988855544455555544444
Q ss_pred cCCc
Q 045886 83 AGNL 86 (184)
Q Consensus 83 ~~N~ 86 (184)
-+|+
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 4444
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=0.011 Score=47.69 Aligned_cols=61 Identities=28% Similarity=0.288 Sum_probs=33.2
Q ss_pred cCCceeeeccCCCCC--CCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCC
Q 045886 4 VGLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNS 64 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l 64 (184)
+.++.|||.+|.++. .+-..+.+||.|+.|++++|.|...|-..-..+.+|+.+-+.+-.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 445667777777762 1222345677777777777777633321112334555555544433
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.0058 Score=48.70 Aligned_cols=66 Identities=26% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCc--ccccCCCCCCeeeccCCCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP--SSLSQLSGLGVLDLSYNNSSGKIPL 70 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P--~~~~~l~~L~~l~ls~N~l~g~~p~ 70 (184)
.|+.|++|.||-|.++ .+- .+..++.|+.|+|..|.|. .+- ..+.++++|+.|.+..|...|.-+.
T Consensus 39 kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred hcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 4778999999999998 442 2678889999999999998 443 3467899999999999999886543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.32 E-value=0.15 Score=43.03 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=32.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccC-CcCCCCCcccccCCCCCCeeeccCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSR-NLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
+..++.|++++|.++ .+|. + ..+|+.|.+++ +.++ .+|..+. ++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence 467788888888888 6662 1 23577777765 4444 5554332 35566666555
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.084 Score=42.67 Aligned_cols=64 Identities=31% Similarity=0.278 Sum_probs=48.0
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~ 65 (184)
+|+.|+.|+|+.|++...|...-..+.+|+.|-|.+..|...-- ..+..+|.++.+.+|.|.+.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 57899999999999985544332456789999999988875433 34566788889999988553
No 65
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.98 E-value=0.15 Score=25.40 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=10.4
Q ss_pred CCCEeeccCCcCCCCCcc
Q 045886 29 SLDFLDLSRNLFSGSIPS 46 (184)
Q Consensus 29 ~L~~L~ls~N~l~g~~P~ 46 (184)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 5554
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.55 E-value=0.14 Score=46.18 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=28.5
Q ss_pred CcCCceeeeccCCCCC-CCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 3 LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
|++|+.|.+++=.+.. ..-....++++|..||+|+.+++ .+ ..++.+++|+.|-+.+=
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNL 205 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCC
Confidence 4556666665544431 11222345566666666666555 33 34445555555544443
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.85 E-value=0.13 Score=46.29 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=17.5
Q ss_pred CCCCCEeeccCCcCCCC-CcccccCCCCCCeeeccCCCCC
Q 045886 27 LTSLDFLDLSRNLFSGS-IPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 27 l~~L~~L~ls~N~l~g~-~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
||+|++|.+++=.+... .-.-..++++|..||+|+-+++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 45555555555444311 1122334555555555554443
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.75 E-value=0.53 Score=39.83 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=15.6
Q ss_pred CCceeeecc-CCCCCCCCcccCCCCCCCEeeccCC
Q 045886 5 GLIAVNLSR-NNLTGPITPKIGELTSLDFLDLSRN 38 (184)
Q Consensus 5 ~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~ls~N 38 (184)
+|+.|++++ ++++ .+|..+. ++|+.|++++|
T Consensus 73 sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence 466666655 3343 4454332 34555555555
No 69
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=88.06 E-value=0.44 Score=26.36 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=12.7
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhc
Q 045886 126 GFYVSSILGFFVGFWGVCGYLMLNR 150 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
.+..++++.+.++++++++++++.+
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWY 36 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEE
Confidence 3455666666555544444444333
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.75 E-value=0.36 Score=33.70 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=10.6
Q ss_pred ceeehhhHHHHHHHHHHHHH
Q 045886 126 GFYVSSILGFFVGFWGVCGY 145 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~ 145 (184)
+.++++++|++++++.++++
T Consensus 64 ~~i~~Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILL 83 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHH
Confidence 34556666666655444443
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.96 E-value=0.052 Score=26.26 Aligned_cols=11 Identities=55% Similarity=0.694 Sum_probs=3.6
Q ss_pred CCEeeccCCcC
Q 045886 30 LDFLDLSRNLF 40 (184)
Q Consensus 30 L~~L~ls~N~l 40 (184)
|++|++++|.+
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33444444433
No 72
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.37 E-value=0.57 Score=23.34 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=6.6
Q ss_pred cCCceeeeccCCCC
Q 045886 4 VGLIAVNLSRNNLT 17 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~ 17 (184)
++|+.|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34444555555443
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.01 E-value=0.52 Score=37.83 Aligned_cols=38 Identities=34% Similarity=0.411 Sum_probs=17.3
Q ss_pred CCCCCEeeccCCcCCCCCcccc----cCCCCCCeeeccCCCC
Q 045886 27 LTSLDFLDLSRNLFSGSIPSSL----SQLSGLGVLDLSYNNS 64 (184)
Q Consensus 27 l~~L~~L~ls~N~l~g~~P~~~----~~l~~L~~l~ls~N~l 64 (184)
+|.|+..+||.|-+....|+.+ +.-+.|.+|.+++|.+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3445555555555544444322 2334455555555443
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=85.71 E-value=0.23 Score=40.73 Aligned_cols=62 Identities=27% Similarity=0.333 Sum_probs=33.1
Q ss_pred cCCceeeeccCCCC--CC--CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCC
Q 045886 4 VGLIAVNLSRNNLT--GP--ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~--g~--~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
+.|+.+.++.|.+. |. +-..+..+++|+.|||..|-|+-. +-..+..+++|+.++++++.+.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 45566666666654 11 112244566666666666666522 1223445556666666666554
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.22 E-value=0.66 Score=23.33 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=7.1
Q ss_pred CCceeeeccCCCC
Q 045886 5 GLIAVNLSRNNLT 17 (184)
Q Consensus 5 ~L~~L~Ls~N~l~ 17 (184)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 76
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=85.20 E-value=1 Score=32.54 Aligned_cols=11 Identities=18% Similarity=0.030 Sum_probs=4.5
Q ss_pred ceeehhhHHHH
Q 045886 126 GFYVSSILGFF 136 (184)
Q Consensus 126 ~~~~~~~~~~~ 136 (184)
++++++.++++
T Consensus 53 GvVVGVGg~il 63 (154)
T PF04478_consen 53 GVVVGVGGPIL 63 (154)
T ss_pred EEEecccHHHH
Confidence 44444444333
No 77
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=83.73 E-value=0.63 Score=47.44 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=23.1
Q ss_pred eccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 34 DLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 34 ~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
||++|+|+-.-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 67888888333356777888888888777664
No 78
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=83.32 E-value=0.86 Score=32.94 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=15.5
Q ss_pred eeehhhHHHHHHHHHHHHHHHh
Q 045886 127 FYVSSILGFFVGFWGVCGYLML 148 (184)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
+++++++|+-+.+++++++++|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred EEEEEEecccHHHHHHHHHhhe
Confidence 7899999977766655554443
No 79
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.98 E-value=0.066 Score=42.86 Aligned_cols=79 Identities=24% Similarity=0.165 Sum_probs=56.6
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc---cccccCCc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG---TQLQSFNA 79 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~---~~l~~l~~ 79 (184)
+.+.+.||.-++.|. .|. ....|+.|+.|.||-|.++ .+ ..+..++.|+.|.|..|.+... ... ..+.+|+.
T Consensus 18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhh
Confidence 445567888887776 332 2457999999999999999 55 3478889999999999987632 111 34455566
Q ss_pred ccccCCc
Q 045886 80 SVYAGNL 86 (184)
Q Consensus 80 ~~~~~N~ 86 (184)
+=+..||
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 6678887
No 80
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.37 E-value=1.8 Score=23.59 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=6.0
Q ss_pred eeehhhHHHHHHH
Q 045886 127 FYVSSILGFFVGF 139 (184)
Q Consensus 127 ~~~~~~~~~~~~~ 139 (184)
+++++++|+++.+
T Consensus 8 IIv~V~vg~~iii 20 (38)
T PF02439_consen 8 IIVAVVVGMAIII 20 (38)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555544433
No 81
>PF15102 TMEM154: TMEM154 protein family
Probab=79.72 E-value=1.4 Score=31.68 Aligned_cols=10 Identities=0% Similarity=-0.040 Sum_probs=4.5
Q ss_pred HHhhcccchh
Q 045886 146 LMLNRSWSYG 155 (184)
Q Consensus 146 ~~~~~~~~~~ 155 (184)
+++.||||.|
T Consensus 79 v~~~kRkr~K 88 (146)
T PF15102_consen 79 VIYYKRKRTK 88 (146)
T ss_pred eeEEeecccC
Confidence 3344555543
No 82
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=79.43 E-value=0.74 Score=37.89 Aligned_cols=61 Identities=18% Similarity=0.078 Sum_probs=38.0
Q ss_pred cCCceeeeccCCCCCCCCcc----cCCCCCCCEeeccCCcCCCCCcc--------------cccCCCCCCeeeccCCCCC
Q 045886 4 VGLIAVNLSRNNLTGPITPK----IGELTSLDFLDLSRNLFSGSIPS--------------SLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~----~~~l~~L~~L~ls~N~l~g~~P~--------------~~~~l~~L~~l~ls~N~l~ 65 (184)
..|+.||||.|.|.-.-++. +.....|++|.|.+|.+. ..-. -.+.-+.|+.+....|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 46788888888887444444 345677888888888765 1111 1233456777777777663
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.17 E-value=3 Score=33.58 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=46.0
Q ss_pred CCcCCceeeeccCCCCCCCCccc----CCCCCCCEeeccCCcCCCCCcc-----c---------ccCCCCCCeeeccCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKI----GELTSLDFLDLSRNLFSGSIPS-----S---------LSQLSGLGVLDLSYNN 63 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~----~~l~~L~~L~ls~N~l~g~~P~-----~---------~~~l~~L~~l~ls~N~ 63 (184)
.|+.|+..+||.|.|....|+.+ +.-+.|.+|.+++|.+- .+-. + ..+-|.|+.+....|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 47889999999999997877764 45578999999999886 2221 1 2245677777777776
Q ss_pred CC
Q 045886 64 SS 65 (184)
Q Consensus 64 l~ 65 (184)
+.
T Consensus 169 le 170 (388)
T COG5238 169 LE 170 (388)
T ss_pred hc
Confidence 63
No 84
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=77.78 E-value=1.6 Score=29.06 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=6.2
Q ss_pred ceeehhhHHHHHH
Q 045886 126 GFYVSSILGFFVG 138 (184)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (184)
+.+++++++.+++
T Consensus 66 gaiagi~vg~~~~ 78 (96)
T PTZ00382 66 GAIAGISVAVVAV 78 (96)
T ss_pred ccEEEEEeehhhH
Confidence 3455555554433
No 85
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=77.41 E-value=0.89 Score=36.97 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=19.5
Q ss_pred CCCCCCEeeccCCc-CCCCCcccccCCCCCCeeeccCC
Q 045886 26 ELTSLDFLDLSRNL-FSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 26 ~l~~L~~L~ls~N~-l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
..++|.+||||.|. ++...-..|.+++.|+++.++.+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 45666666666653 33222234555666666655443
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.65 E-value=4.9 Score=27.26 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccC
Q 045886 2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSY 61 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~ 61 (184)
+++.|+.+.+.. .+. .++ ..|.++++|+.+.+.++ +. .++ ..|..+++++.+.+.+
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-cc-ccceeeeecccccccccccc
Confidence 345778888874 566 444 44777878888888875 66 343 4567777788888865
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.29 E-value=6.6 Score=26.57 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
+++.|+.+++..+ +. .++ ..|..+..++.+.+.+ .+...-...|..+++|+.+++..|
T Consensus 33 ~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp T-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred ccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 3567889999875 66 444 4588888899999976 444123346777899999998665
No 88
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=71.02 E-value=4.2 Score=26.86 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=14.7
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhcccc
Q 045886 126 GFYVSSILGFFVGFWGVCGYLMLNRSWS 153 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
|.+++.+.+++++++++.+++..+.||+
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 4555555666665555444444444444
No 89
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=69.84 E-value=5.6 Score=30.48 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=11.1
Q ss_pred ceeehhhHHHHHHHHHHHHHHHh
Q 045886 126 GFYVSSILGFFVGFWGVCGYLML 148 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
.++++++.|++.++++++++.+.
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHH
Confidence 35555555555544444443333
No 90
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=67.32 E-value=4.2 Score=32.93 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=5.1
Q ss_pred ehhhHHHHHHHHH
Q 045886 129 VSSILGFFVGFWG 141 (184)
Q Consensus 129 ~~~~~~~~~~~~~ 141 (184)
++.++++++++++
T Consensus 259 ~aSiiaIliIVLI 271 (299)
T PF02009_consen 259 IASIIAILIIVLI 271 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 91
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=66.57 E-value=4.9 Score=35.74 Aligned_cols=27 Identities=7% Similarity=-0.102 Sum_probs=17.2
Q ss_pred ccceeehhhHHHHHHHHHHHHHHHhhc
Q 045886 124 TLGFYVSSILGFFVGFWGVCGYLMLNR 150 (184)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
.+|+++++++.+++++++++++.+..+
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 347888888877776665555444433
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.04 E-value=3.7 Score=35.91 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=7.2
Q ss_pred cCCceeeeccCCCC
Q 045886 4 VGLIAVNLSRNNLT 17 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~ 17 (184)
..+..++|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34445555555554
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.33 E-value=0.48 Score=38.47 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=24.9
Q ss_pred CceeeeccCCCCCC-CCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeecc
Q 045886 6 LIAVNLSRNNLTGP-ITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60 (184)
Q Consensus 6 L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls 60 (184)
|++||||.-.++-. +-.-+..+.+|+.|.+.+++|...+-..++.-.+|+.+|++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 45555555544411 11113344455555555555554444444444444444444
No 94
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=59.09 E-value=3.1 Score=33.48 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhccc
Q 045886 130 SSILGFFVGFWGVCGYLMLNRSW 152 (184)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
++++++++++++++++++++|++
T Consensus 152 aVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333333334444444444433
No 95
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=58.09 E-value=12 Score=23.46 Aligned_cols=33 Identities=6% Similarity=-0.058 Sum_probs=20.8
Q ss_pred HHHHHhhcccchhHHHhhhhhhhhhhhhehhhH
Q 045886 143 CGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNI 175 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (184)
++.++...|..++..+...+.++.+|+..+...
T Consensus 23 ~~~~wi~~Ra~~~~DKT~~eRQa~LyD~lmi~I 55 (72)
T PF13268_consen 23 VSGIWILWRALRKKDKTAKERQAFLYDMLMIAI 55 (72)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 333444455566667777788888887766543
No 96
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=57.87 E-value=3.4 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhcccchhHH
Q 045886 126 GFYVSSILGFFVGFWGVCGYLMLNRSWSYGYF 157 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+.+.+.+.++++++.++..+++++|.+|++.|
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp --------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 34444444444444444444455554444433
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=57.28 E-value=7.4 Score=40.31 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.9
Q ss_pred eeccCCCCCCCCc-ccCCCCCCCEeeccCCcCC
Q 045886 10 NLSRNNLTGPITP-KIGELTSLDFLDLSRNLFS 41 (184)
Q Consensus 10 ~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~ 41 (184)
||++|+|+ .+|. .|..|++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 68999999 6665 5889999999999999876
No 98
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=56.36 E-value=3.8 Score=25.11 Aligned_cols=12 Identities=8% Similarity=0.456 Sum_probs=0.0
Q ss_pred eeehhhHHHHHH
Q 045886 127 FYVSSILGFFVG 138 (184)
Q Consensus 127 ~~~~~~~~~~~~ 138 (184)
++.+++++++++
T Consensus 14 vIaG~Vvgll~a 25 (64)
T PF01034_consen 14 VIAGGVVGLLFA 25 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 99
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.28 E-value=8.5 Score=26.85 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=12.5
Q ss_pred ceeehhhHHHHHHHHHHHHHHHh
Q 045886 126 GFYVSSILGFFVGFWGVCGYLML 148 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
+++++++.|+++.++ ++..++.
T Consensus 68 ~Ii~gv~aGvIg~Il-li~y~ir 89 (122)
T PF01102_consen 68 GIIFGVMAGVIGIIL-LISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ehhHHHHHHHHHHHH-HHHHHHH
Confidence 566677777655544 4444443
No 100
>PTZ00046 rifin; Provisional
Probab=56.26 E-value=9 Score=31.75 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHHH
Q 045886 130 SSILGFFVGFWGVC 143 (184)
Q Consensus 130 ~~~~~~~~~~~~~~ 143 (184)
+.++++++++++++
T Consensus 319 aSiiAIvVIVLIMv 332 (358)
T PTZ00046 319 ASIVAIVVIVLIMV 332 (358)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 101
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=54.58 E-value=10 Score=31.40 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=4.7
Q ss_pred hhhHHHHHHHHH
Q 045886 130 SSILGFFVGFWG 141 (184)
Q Consensus 130 ~~~~~~~~~~~~ 141 (184)
+.++++++++++
T Consensus 314 aSiIAIvvIVLI 325 (353)
T TIGR01477 314 ASIIAILIIVLI 325 (353)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 102
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=53.00 E-value=6.7 Score=31.72 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=3.0
Q ss_pred CCcCCCC
Q 045886 84 GNLELCG 90 (184)
Q Consensus 84 ~N~~lc~ 90 (184)
|+...|.
T Consensus 222 g~SY~C~ 228 (306)
T PF01299_consen 222 GHSYKCN 228 (306)
T ss_pred CceeECC
Confidence 3444443
No 103
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=52.77 E-value=46 Score=26.71 Aligned_cols=16 Identities=13% Similarity=-0.268 Sum_probs=7.7
Q ss_pred ce-eehhhHHHHHHHHH
Q 045886 126 GF-YVSSILGFFVGFWG 141 (184)
Q Consensus 126 ~~-~~~~~~~~~~~~~~ 141 (184)
|. ++++++|+++..++
T Consensus 213 W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 213 WKIVVGVVGGVVLLGLL 229 (278)
T ss_pred EEEEEEehHHHHHHHHH
Confidence 44 44556665544333
No 104
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=50.87 E-value=8.7 Score=28.72 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=8.3
Q ss_pred eeehhhHHHHHHHHHHHH
Q 045886 127 FYVSSILGFFVGFWGVCG 144 (184)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ 144 (184)
..+++++.++++++++++
T Consensus 158 ~~laI~lPvvv~~~~~~~ 175 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIM 175 (189)
T ss_pred eeEEEEccHHHHHHHHHH
Confidence 444555554444443333
No 105
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.54 E-value=16 Score=29.37 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhHH
Q 045886 130 SSILGFFVGFWGVCGYLMLNRSWSYGYF 157 (184)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++|+++++.++.+++.+.+|+|..|.
T Consensus 235 AiALG~v~ll~l~Gii~~~~~r~~~~~~ 262 (281)
T PF12768_consen 235 AIALGTVFLLVLIGIILAYIRRRRQGYV 262 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 3444444333333333334444444443
No 106
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.60 E-value=8.7 Score=33.69 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCCCCCEeeccCCcCCCCCcc---cccCCCCCCeeeccCC--CCCCCCCCccccc--cCCcccccCCcCCCC
Q 045886 26 ELTSLDFLDLSRNLFSGSIPS---SLSQLSGLGVLDLSYN--NSSGKIPLGTQLQ--SFNASVYAGNLELCG 90 (184)
Q Consensus 26 ~l~~L~~L~ls~N~l~g~~P~---~~~~l~~L~~l~ls~N--~l~g~~p~~~~l~--~l~~~~~~~N~~lc~ 90 (184)
+.+.+..+.|++|+|. .+-. --...|.|..|+|++| .+.. -+....++ .+..+-+.||| +|.
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNP-lc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNP-LCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCc-ccc
Confidence 4677888999999987 4322 1234678999999999 3331 11112222 33556688998 453
No 107
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=47.29 E-value=18 Score=22.40 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=15.8
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhccc
Q 045886 126 GFYVSSILGFFVGFWGVCGYLMLNRSW 152 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
|..++++.+++++++..+.-++|+++.
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIKE 59 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhhH
Confidence 566666666666655555555555443
No 108
>PRK00523 hypothetical protein; Provisional
Probab=46.88 E-value=20 Score=22.48 Aligned_cols=16 Identities=0% Similarity=-0.203 Sum_probs=8.2
Q ss_pred HHHHHhhcccchhHHH
Q 045886 143 CGYLMLNRSWSYGYFN 158 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~ 158 (184)
++.+++.|+.-.+|++
T Consensus 20 ~~Gffiark~~~k~l~ 35 (72)
T PRK00523 20 IIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555554
No 109
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=45.54 E-value=53 Score=25.30 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=15.8
Q ss_pred cccccceeehhhHHHHHHHHHHHHHHHhhcccchhH
Q 045886 121 QFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGY 156 (184)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
..+.++++.|++.+++++++++++..+..+.....|
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~ 72 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGY 72 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHhhccccchh
Confidence 344534455555555554444444423333333333
No 110
>PRK01844 hypothetical protein; Provisional
Probab=45.07 E-value=27 Score=21.90 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=6.9
Q ss_pred HHHhhcccchhHHH
Q 045886 145 YLMLNRSWSYGYFN 158 (184)
Q Consensus 145 ~~~~~~~~~~~~~~ 158 (184)
.+++.|+.-.+|++
T Consensus 21 Gff~ark~~~k~lk 34 (72)
T PRK01844 21 GFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555543
No 111
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=43.15 E-value=38 Score=28.60 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=6.1
Q ss_pred ceeehhhHHHHH
Q 045886 126 GFYVSSILGFFV 137 (184)
Q Consensus 126 ~~~~~~~~~~~~ 137 (184)
++|++|.|++++
T Consensus 367 gaIaGIsvavvv 378 (397)
T PF03302_consen 367 GAIAGISVAVVV 378 (397)
T ss_pred cceeeeeehhHH
Confidence 455555555443
No 112
>PF15179 Myc_target_1: Myc target protein 1
Probab=42.47 E-value=18 Score=27.00 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=14.0
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhc
Q 045886 127 FYVSSILGFFVGFWGVCGYLMLNR 150 (184)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
+-+.+++|++++.++.+++.+..|
T Consensus 25 F~vSm~iGLviG~li~~LltwlSR 48 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTWLSR 48 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777666665555555444
No 113
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.77 E-value=18 Score=17.37 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=5.2
Q ss_pred cCCceeeeccC
Q 045886 4 VGLIAVNLSRN 14 (184)
Q Consensus 4 ~~L~~L~Ls~N 14 (184)
+.|+.|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34445555444
No 114
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=40.44 E-value=20 Score=26.50 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=4.2
Q ss_pred eeehhhHHHH
Q 045886 127 FYVSSILGFF 136 (184)
Q Consensus 127 ~~~~~~~~~~ 136 (184)
++++++++++
T Consensus 80 iivgvi~~Vi 89 (179)
T PF13908_consen 80 IIVGVICGVI 89 (179)
T ss_pred eeeehhhHHH
Confidence 4444444433
No 115
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=40.42 E-value=38 Score=21.45 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=5.2
Q ss_pred HHHHHHhhcccc
Q 045886 142 VCGYLMLNRSWS 153 (184)
Q Consensus 142 ~~~~~~~~~~~~ 153 (184)
+..++.|..+|+
T Consensus 20 ~wl~lHY~~k~~ 31 (75)
T TIGR02976 20 LWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHhhhc
Confidence 333444444443
No 116
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=39.58 E-value=22 Score=25.06 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=12.4
Q ss_pred eehhhHHHHHHHHHHHHHHHhhcccchh
Q 045886 128 YVSSILGFFVGFWGVCGYLMLNRSWSYG 155 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+.+++++++++++..+.+++.+..|++
T Consensus 102 a~~~il~il~~i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 102 PSPGIVLVLVGIIITCCLLSVYRFTRRT 129 (139)
T ss_pred hhhHHHHHHHHHHHHHHHHhhheeeecc
Confidence 3334445555544444444444433333
No 117
>PF15102 TMEM154: TMEM154 protein family
Probab=38.70 E-value=28 Score=25.09 Aligned_cols=32 Identities=3% Similarity=-0.102 Sum_probs=17.5
Q ss_pred eehhhHHHHHHHHHHHHHHHhhcccchhHHHh
Q 045886 128 YVSSILGFFVGFWGVCGYLMLNRSWSYGYFNF 159 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
++.+++..++++++++.++++..+.|+|.-+.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 44444444444444555567777776665544
No 118
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=37.88 E-value=11 Score=27.61 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred ceeehhhHHHHHHHHHHHH-HHHhhcccchhH
Q 045886 126 GFYVSSILGFFVGFWGVCG-YLMLNRSWSYGY 156 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 156 (184)
..++++++|+++++.++.+ ++++.||+..||
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp --------------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 3556666666665544333 334566666665
No 119
>PRK11677 hypothetical protein; Provisional
Probab=37.53 E-value=91 Score=22.12 Aligned_cols=7 Identities=43% Similarity=1.070 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 045886 133 LGFFVGF 139 (184)
Q Consensus 133 ~~~~~~~ 139 (184)
+++++|+
T Consensus 8 i~livG~ 14 (134)
T PRK11677 8 IGLVVGI 14 (134)
T ss_pred HHHHHHH
Confidence 3444443
No 120
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=35.76 E-value=11 Score=25.83 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccchh
Q 045886 140 WGVCGYLMLNRSWSYG 155 (184)
Q Consensus 140 ~~~~~~~~~~~~~~~~ 155 (184)
++++.+.+++||-.++
T Consensus 39 LLliGCWYckRRSGYk 54 (118)
T PF14991_consen 39 LLLIGCWYCKRRSGYK 54 (118)
T ss_dssp ----------------
T ss_pred HHHHhheeeeecchhh
Confidence 3444444445444333
No 121
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=32.06 E-value=50 Score=23.90 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=4.1
Q ss_pred ccchhHHHhh
Q 045886 151 SWSYGYFNFL 160 (184)
Q Consensus 151 ~~~~~~~~~~ 160 (184)
+.+++|-.++
T Consensus 27 kl~r~Y~~lm 36 (151)
T PF14584_consen 27 KLKRRYDALM 36 (151)
T ss_pred HHHHHHHHHh
Confidence 3334444443
No 122
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=30.76 E-value=1.8e+02 Score=19.98 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=3.9
Q ss_pred eehhhHHHHH
Q 045886 128 YVSSILGFFV 137 (184)
Q Consensus 128 ~~~~~~~~~~ 137 (184)
.++.++.+++
T Consensus 64 fvglii~Liv 73 (128)
T PF15145_consen 64 FVGLIIVLIV 73 (128)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 123
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=30.75 E-value=26 Score=29.53 Aligned_cols=29 Identities=0% Similarity=0.054 Sum_probs=13.3
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhcccchh
Q 045886 127 FYVSSILGFFVGFWGVCGYLMLNRSWSYG 155 (184)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+++++.+..++.+++.++++++.+|+|..
T Consensus 388 i~~avl~p~~il~~~~~~~~~~v~rrr~~ 416 (436)
T PTZ00208 388 IILAVLVPAIILAIIAVAFFIMVKRRRNS 416 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeeeccCC
Confidence 34444444444333334455555555443
No 124
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=30.05 E-value=37 Score=21.71 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=11.7
Q ss_pred ceeehhhHHHHHH-HHHHHHHHHhhc
Q 045886 126 GFYVSSILGFFVG-FWGVCGYLMLNR 150 (184)
Q Consensus 126 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 150 (184)
+..++++++-++. ++++.+++++.+
T Consensus 34 g~LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 34 GLLAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666664443 333333333333
No 125
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.14 E-value=1.9e+02 Score=20.16 Aligned_cols=10 Identities=20% Similarity=0.853 Sum_probs=4.3
Q ss_pred ehhhHHHHHH
Q 045886 129 VSSILGFFVG 138 (184)
Q Consensus 129 ~~~~~~~~~~ 138 (184)
+++++|+++|
T Consensus 4 i~lvvG~iiG 13 (128)
T PF06295_consen 4 IGLVVGLIIG 13 (128)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 126
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=26.78 E-value=46 Score=26.94 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHH
Q 045886 133 LGFFVGFWGVCGYLMLNRSWSYGYF 157 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+|+++++.+++-.+|-.|+.+..||
T Consensus 11 vG~IAIiaLLvhGlWtsRkE~s~~F 35 (324)
T COG3115 11 VGAIAIIALLVHGLWTSRKERSSYF 35 (324)
T ss_pred HHHHHHHHHHHhhhhhcchhhcccc
Confidence 3333333333444455555444444
No 127
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.61 E-value=51 Score=19.14 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.0
Q ss_pred ccchhHHHhhhh
Q 045886 151 SWSYGYFNFLTG 162 (184)
Q Consensus 151 ~~~~~~~~~~~~ 162 (184)
.+++.|-...+.
T Consensus 24 ~K~ygYkht~d~ 35 (50)
T PF12606_consen 24 LKAYGYKHTVDP 35 (50)
T ss_pred hhccccccccCC
Confidence 333444444443
No 128
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=26.59 E-value=47 Score=25.62 Aligned_cols=19 Identities=5% Similarity=-0.290 Sum_probs=8.8
Q ss_pred ceeehhhHHHHHHHHHHHH
Q 045886 126 GFYVSSILGFFVGFWGVCG 144 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (184)
|.++.+++++++++++.++
T Consensus 187 W~i~~~v~~i~~i~vv~i~ 205 (226)
T PHA02662 187 WTLLLAVAAVTVLGVVAVS 205 (226)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 5555555544444333333
No 129
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.75 E-value=2.2e+02 Score=20.10 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 045886 130 SSILGFFVGFWGVCGYL 146 (184)
Q Consensus 130 ~~~~~~~~~~~~~~~~~ 146 (184)
..++|+++|+++..++.
T Consensus 10 ~a~igLvvGi~IG~li~ 26 (138)
T COG3105 10 YALIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555544433333
No 130
>PRK01741 cell division protein ZipA; Provisional
Probab=24.85 E-value=74 Score=26.20 Aligned_cols=32 Identities=25% Similarity=0.135 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhHHHhhh
Q 045886 130 SSILGFFVGFWGVCGYLMLNRSWSYGYFNFLT 161 (184)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
.+++|++++++++.-.+|-.||-+-+||.--.
T Consensus 7 liILg~lal~~Lv~hgiWsnRrEKSqyF~n~~ 38 (332)
T PRK01741 7 LIILGILALVALVAHGIWSNRREKSQYFSNAN 38 (332)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhhhccc
Confidence 34444444444455556667776667775443
No 131
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.71 E-value=97 Score=19.62 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=5.1
Q ss_pred HHHHHHhhccc
Q 045886 142 VCGYLMLNRSW 152 (184)
Q Consensus 142 ~~~~~~~~~~~ 152 (184)
+..++.|..+|
T Consensus 20 ~WL~lHY~sk~ 30 (75)
T PF06667_consen 20 IWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHhc
Confidence 33444555444
No 132
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=24.62 E-value=39 Score=20.10 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=9.7
Q ss_pred ehhhHHHHHHHHHHHHHHHhh
Q 045886 129 VSSILGFFVGFWGVCGYLMLN 149 (184)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~ 149 (184)
..+++..++++++++++++|.
T Consensus 31 ~tVVlP~l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 31 FTVVLPTLAAVFLFIVVFVYL 51 (56)
T ss_pred eeEehhHHHHHHHHHhheeEE
Confidence 344555555444444444443
No 133
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=24.14 E-value=56 Score=24.19 Aligned_cols=13 Identities=8% Similarity=-0.100 Sum_probs=5.8
Q ss_pred HHhhcccchhHHH
Q 045886 146 LMLNRSWSYGYFN 158 (184)
Q Consensus 146 ~~~~~~~~~~~~~ 158 (184)
-++...+++..|+
T Consensus 134 SyiaYqkKKlCF~ 146 (169)
T PF12301_consen 134 SYIAYQKKKLCFK 146 (169)
T ss_pred HHHHHHhhcccee
Confidence 3444444445553
No 134
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=23.69 E-value=68 Score=23.18 Aligned_cols=23 Identities=9% Similarity=-0.139 Sum_probs=8.8
Q ss_pred eehhhHHHHHHHHHHHHHHHhhc
Q 045886 128 YVSSILGFFVGFWGVCGYLMLNR 150 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
++++.+.+++.+++++.+++..+
T Consensus 122 ilaisvtvv~~iliii~CLiei~ 144 (154)
T PF14914_consen 122 ILAISVTVVVMILIIIFCLIEIC 144 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344333
No 135
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=22.61 E-value=49 Score=26.66 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=5.1
Q ss_pred HHhhcccchhHH
Q 045886 146 LMLNRSWSYGYF 157 (184)
Q Consensus 146 ~~~~~~~~~~~~ 157 (184)
+|-.|+-+.++|
T Consensus 22 lwt~Rke~s~~f 33 (284)
T TIGR02205 22 LWTSRKEKSKYF 33 (284)
T ss_pred cccccccccccc
Confidence 344444344443
No 136
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=20.64 E-value=33 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccch
Q 045886 135 FFVGFWGVCGYLMLNRSWSY 154 (184)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~ 154 (184)
++++++.|.++++|++|+|.
T Consensus 235 iILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 235 IILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp --------------------
T ss_pred hhhhhhhccceeeecccccc
Confidence 34444556666666655543
Done!