Query 045886
Match_columns 184
No_of_seqs 251 out of 2488
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.7 2.1E-18 7.2E-23 152.7 7.0 98 2-100 654-751 (768)
2 1w8a_A SLIT protein; signaling 99.6 4.2E-15 1.4E-19 110.7 7.0 92 2-93 52-144 (192)
3 3g39_A Variable lymphocyte rec 99.5 2.4E-14 8.2E-19 104.7 9.5 89 4-92 30-119 (170)
4 2wfh_A SLIT homolog 2 protein 99.5 1.7E-14 5.7E-19 107.7 7.9 92 2-93 52-144 (193)
5 1ogq_A PGIP-2, polygalacturona 99.5 6.5E-15 2.2E-19 117.4 6.0 94 2-97 219-312 (313)
6 4g8a_A TOLL-like receptor 4; l 99.5 1.8E-14 6.2E-19 123.3 8.7 92 2-93 492-585 (635)
7 2v70_A SLIT-2, SLIT homolog 2 99.5 2.5E-14 8.6E-19 108.7 8.3 91 2-92 79-170 (220)
8 2r9u_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 103.6 9.5 89 4-92 33-122 (174)
9 3j0a_A TOLL-like receptor 5; m 99.5 3.1E-14 1E-18 127.2 8.2 87 3-93 479-565 (844)
10 2v9t_B SLIT homolog 2 protein 99.5 9E-14 3.1E-18 105.6 9.0 92 2-93 78-170 (220)
11 2ifg_A High affinity nerve gro 99.5 7.2E-14 2.5E-18 112.4 8.2 91 2-92 29-120 (347)
12 3e6j_A Variable lymphocyte rec 99.5 2.8E-13 9.6E-18 103.4 9.7 90 2-92 86-176 (229)
13 3rgz_A Protein brassinosteroid 99.4 1.1E-13 3.9E-18 122.4 8.0 87 2-88 630-717 (768)
14 2o6r_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 98.2 9.1 89 3-91 51-140 (177)
15 2o6s_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 96.8 10.3 91 2-92 74-165 (208)
16 3m19_A Variable lymphocyte rec 99.4 2.3E-12 8E-17 99.3 10.3 89 2-90 105-194 (251)
17 3rfs_A Internalin B, repeat mo 99.4 2.5E-12 8.5E-17 100.3 10.3 91 2-92 131-222 (272)
18 2o6q_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 99.1 10.2 91 2-92 131-222 (270)
19 3zyj_A Leucine-rich repeat-con 99.4 1.1E-12 3.9E-17 108.8 7.7 92 2-93 205-297 (440)
20 1p9a_G Platelet glycoprotein I 99.4 3.3E-12 1.1E-16 100.8 9.7 89 4-92 124-212 (290)
21 3zyi_A Leucine-rich repeat-con 99.3 1.5E-12 5.2E-17 108.4 7.6 92 2-93 216-308 (452)
22 3v47_A TOLL-like receptor 5B a 99.3 3E-12 1E-16 106.1 8.3 91 2-92 321-412 (455)
23 2v70_A SLIT-2, SLIT homolog 2 99.3 7E-12 2.4E-16 95.1 8.5 86 2-87 55-141 (220)
24 3vq2_A TLR4, TOLL-like recepto 99.3 3.6E-12 1.2E-16 109.3 7.7 92 2-93 471-563 (606)
25 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4E-16 93.9 8.9 83 3-85 55-138 (220)
26 1ozn_A Reticulon 4 receptor; N 99.3 2.8E-12 9.5E-17 100.4 5.5 90 3-92 152-242 (285)
27 2z66_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 98.9 7.7 89 3-91 174-264 (306)
28 2wfh_A SLIT homolog 2 protein 99.2 2.4E-11 8.2E-16 90.4 8.6 84 4-88 31-115 (193)
29 3t6q_A CD180 antigen; protein- 99.2 5.1E-12 1.7E-16 108.4 5.3 90 2-92 474-564 (606)
30 1ogq_A PGIP-2, polygalacturona 99.2 4E-12 1.4E-16 101.2 4.3 83 3-85 75-159 (313)
31 1w8a_A SLIT protein; signaling 99.2 4.7E-12 1.6E-16 94.0 4.3 91 2-92 76-166 (192)
32 2z63_A TOLL-like receptor 4, v 99.2 1.2E-11 3.9E-16 105.2 6.9 92 2-93 443-536 (570)
33 3e6j_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 90.7 9.8 84 4-87 40-124 (229)
34 4fcg_A Uncharacterized protein 99.2 3.5E-11 1.2E-15 96.5 9.0 85 3-89 182-267 (328)
35 2id5_A Lingo-1, leucine rich r 99.2 1.3E-11 4.3E-16 103.2 6.6 91 2-92 246-337 (477)
36 1ziw_A TOLL-like receptor 3; i 99.2 2.2E-11 7.4E-16 105.9 8.0 91 2-93 534-627 (680)
37 3m19_A Variable lymphocyte rec 99.2 6.1E-11 2.1E-15 91.3 9.6 84 3-86 58-142 (251)
38 2o6s_A Variable lymphocyte rec 99.2 7.5E-11 2.6E-15 88.2 9.8 83 4-86 28-111 (208)
39 2je0_A Acidic leucine-rich nuc 99.2 2.4E-11 8.2E-16 86.2 6.1 83 3-87 16-100 (149)
40 4fcg_A Uncharacterized protein 99.2 4.5E-11 1.5E-15 95.8 8.1 88 2-90 204-292 (328)
41 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.6E-15 84.7 9.8 85 3-87 27-112 (177)
42 2ell_A Acidic leucine-rich nuc 99.2 3.8E-11 1.3E-15 86.8 6.5 80 4-85 24-105 (168)
43 2ell_A Acidic leucine-rich nuc 99.2 3.1E-11 1E-15 87.3 5.9 85 2-88 47-133 (168)
44 1dce_A Protein (RAB geranylger 99.2 5.6E-11 1.9E-15 102.1 8.2 81 3-86 462-544 (567)
45 3rfs_A Internalin B, repeat mo 99.2 1.5E-10 5.2E-15 90.1 9.7 86 2-87 83-169 (272)
46 4ezg_A Putative uncharacterize 99.2 4E-11 1.4E-15 89.2 6.0 83 3-85 87-169 (197)
47 4g8a_A TOLL-like receptor 4; l 99.2 6E-11 2.1E-15 101.4 7.8 84 3-86 75-159 (635)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 7.5E-11 2.6E-15 100.6 7.8 64 28-92 450-514 (562)
49 1p9a_G Platelet glycoprotein I 99.1 2.2E-10 7.6E-15 90.3 9.8 85 2-87 75-160 (290)
50 2je0_A Acidic leucine-rich nuc 99.1 9.7E-11 3.3E-15 83.0 6.5 84 2-87 40-125 (149)
51 4b8c_D Glucose-repressible alc 99.1 8.8E-11 3E-15 103.5 7.3 83 3-87 246-328 (727)
52 3g39_A Variable lymphocyte rec 99.1 1.9E-10 6.4E-15 83.8 7.7 69 2-70 52-120 (170)
53 2z7x_B TOLL-like receptor 1, v 99.1 1.4E-10 4.9E-15 97.7 8.0 85 5-92 400-485 (520)
54 2xot_A Amphoterin-induced prot 99.1 1.1E-10 3.8E-15 94.6 6.9 85 2-86 62-147 (361)
55 2xot_A Amphoterin-induced prot 99.1 1.5E-10 5.1E-15 93.8 7.2 65 2-66 86-150 (361)
56 1wwl_A Monocyte differentiatio 99.1 1.1E-10 3.7E-15 92.7 6.2 85 2-87 93-185 (312)
57 4eco_A Uncharacterized protein 99.1 2.5E-10 8.4E-15 99.1 8.8 83 3-87 487-578 (636)
58 2o6q_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 87.0 9.7 86 2-87 83-169 (270)
59 2z81_A CD282 antigen, TOLL-lik 99.1 2.8E-10 9.6E-15 96.3 8.7 65 26-92 449-514 (549)
60 3v47_A TOLL-like receptor 5B a 99.1 1.8E-10 6.1E-15 95.4 7.0 84 3-86 298-382 (455)
61 4glp_A Monocyte differentiatio 99.1 3.3E-10 1.1E-14 89.8 8.2 81 3-86 196-283 (310)
62 4eco_A Uncharacterized protein 99.1 5.4E-11 1.9E-15 103.3 3.8 69 2-70 204-293 (636)
63 4ezg_A Putative uncharacterize 99.1 2.4E-10 8.2E-15 84.9 6.7 83 2-87 110-193 (197)
64 1ozn_A Reticulon 4 receptor; N 99.1 5.8E-10 2E-14 87.1 8.7 85 2-86 78-164 (285)
65 2r9u_A Variable lymphocyte rec 99.0 4.8E-10 1.6E-14 82.0 7.7 69 2-70 55-123 (174)
66 3vq2_A TLR4, TOLL-like recepto 99.0 4.3E-10 1.5E-14 96.4 8.5 85 2-86 54-139 (606)
67 1a9n_A U2A', U2A'; complex (nu 99.0 1.9E-10 6.5E-15 84.0 5.4 80 3-86 18-99 (176)
68 1wwl_A Monocyte differentiatio 99.0 2.9E-10 9.9E-15 90.2 6.8 82 3-86 200-285 (312)
69 2z62_A TOLL-like receptor 4, v 99.0 5.4E-10 1.9E-14 86.9 7.6 61 5-65 53-113 (276)
70 3oja_B Anopheles plasmodium-re 99.0 9.6E-10 3.3E-14 94.6 9.5 85 2-86 97-182 (597)
71 1xku_A Decorin; proteoglycan, 99.0 8.2E-10 2.8E-14 88.0 8.3 85 4-88 192-276 (330)
72 2ft3_A Biglycan; proteoglycan, 99.0 8.3E-10 2.8E-14 88.1 8.1 86 4-89 193-278 (332)
73 1a9n_A U2A', U2A'; complex (nu 99.0 1.9E-10 6.5E-15 83.9 4.0 84 4-89 42-127 (176)
74 2z62_A TOLL-like receptor 4, v 99.0 1.1E-09 3.8E-14 85.1 8.6 85 2-86 74-160 (276)
75 3oja_A Leucine-rich immune mol 99.0 2.2E-10 7.6E-15 96.5 4.9 86 3-91 168-253 (487)
76 2z66_A Variable lymphocyte rec 99.0 4.7E-10 1.6E-14 88.4 6.4 86 2-87 124-211 (306)
77 2z81_A CD282 antigen, TOLL-lik 99.0 6.1E-10 2.1E-14 94.3 7.2 85 2-86 48-134 (549)
78 3o6n_A APL1; leucine-rich repe 99.0 1.7E-09 5.7E-14 88.1 9.4 82 3-85 92-175 (390)
79 3t6q_A CD180 antigen; protein- 99.0 5.7E-10 2E-14 95.6 6.8 64 3-66 56-119 (606)
80 2id5_A Lingo-1, leucine rich r 99.0 8.8E-10 3E-14 92.0 7.6 67 3-69 55-121 (477)
81 4ecn_A Leucine-rich repeat pro 99.0 1.8E-10 6.1E-15 103.4 3.4 65 2-66 446-530 (876)
82 2z80_A TOLL-like receptor 2, v 99.0 8.8E-10 3E-14 88.7 7.1 84 2-85 74-159 (353)
83 1dce_A Protein (RAB geranylger 99.0 9.6E-10 3.3E-14 94.4 7.7 79 5-87 442-520 (567)
84 3zyi_A Leucine-rich repeat-con 99.0 1E-09 3.5E-14 91.2 7.7 64 3-66 98-161 (452)
85 3oja_B Anopheles plasmodium-re 99.0 1.2E-09 4.1E-14 94.0 8.2 87 2-88 73-160 (597)
86 3j0a_A TOLL-like receptor 5; m 99.0 9.9E-10 3.4E-14 98.1 7.9 85 2-86 71-159 (844)
87 4b8c_D Glucose-repressible alc 99.0 1.2E-09 4E-14 96.4 8.1 83 2-87 222-305 (727)
88 3o53_A Protein LRIM1, AGAP0063 99.0 5.6E-10 1.9E-14 88.7 5.4 84 4-90 169-252 (317)
89 4ecn_A Leucine-rich repeat pro 99.0 1.8E-09 6.1E-14 96.9 9.1 84 2-87 726-818 (876)
90 2ft3_A Biglycan; proteoglycan, 99.0 1.7E-09 5.8E-14 86.3 8.1 64 3-67 216-279 (332)
91 3o6n_A APL1; leucine-rich repe 99.0 2E-09 6.9E-14 87.6 8.5 86 2-87 67-153 (390)
92 1xku_A Decorin; proteoglycan, 98.9 1.5E-09 5E-14 86.5 7.4 84 2-88 169-253 (330)
93 3zyj_A Leucine-rich repeat-con 98.9 1.7E-09 5.7E-14 89.7 7.8 67 2-68 86-152 (440)
94 2z7x_B TOLL-like receptor 1, v 98.9 1E-09 3.5E-14 92.5 6.4 86 2-87 322-411 (520)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.4E-09 4.8E-14 92.7 7.2 81 4-86 52-132 (562)
96 2xwt_C Thyrotropin receptor; s 98.9 8.3E-10 2.9E-14 84.1 4.8 82 3-85 54-140 (239)
97 1ziw_A TOLL-like receptor 3; i 98.9 3.9E-09 1.3E-13 91.6 9.1 63 4-66 49-111 (680)
98 2ifg_A High affinity nerve gro 98.9 2.2E-09 7.5E-14 86.1 7.0 80 7-88 11-93 (347)
99 2z80_A TOLL-like receptor 2, v 98.9 1.4E-09 4.7E-14 87.6 5.7 85 4-88 52-137 (353)
100 4fmz_A Internalin; leucine ric 98.9 1.9E-09 6.5E-14 86.2 6.5 84 2-89 241-325 (347)
101 2z63_A TOLL-like receptor 4, v 98.9 3.2E-09 1.1E-13 90.0 7.7 83 3-85 51-134 (570)
102 3oja_A Leucine-rich immune mol 98.9 1.2E-09 4.1E-14 92.0 4.7 65 3-67 119-184 (487)
103 4glp_A Monocyte differentiatio 98.9 3.3E-09 1.1E-13 84.0 6.8 83 4-86 91-180 (310)
104 1h6t_A Internalin B; cell adhe 98.8 1.1E-08 3.8E-13 80.4 8.3 60 3-66 89-148 (291)
105 1xeu_A Internalin C; cellular 98.8 1.4E-08 4.7E-13 78.9 8.1 60 3-66 40-99 (263)
106 2xwt_C Thyrotropin receptor; s 98.8 3.2E-09 1.1E-13 80.9 4.3 84 4-87 31-117 (239)
107 1h6u_A Internalin H; cell adhe 98.8 1.6E-08 5.4E-13 80.2 8.4 60 3-66 84-143 (308)
108 1h6u_A Internalin H; cell adhe 98.8 1.4E-08 4.7E-13 80.5 7.9 59 3-65 106-164 (308)
109 1m9s_A Internalin B; cell inva 98.8 7.9E-09 2.7E-13 89.4 6.9 79 3-86 130-208 (605)
110 1xeu_A Internalin C; cellular 98.8 1.3E-08 4.5E-13 78.9 7.4 81 3-87 62-162 (263)
111 1h6t_A Internalin B; cell adhe 98.8 1.3E-08 4.6E-13 80.0 7.5 80 2-86 66-145 (291)
112 1m9s_A Internalin B; cell inva 98.7 2.2E-08 7.7E-13 86.5 8.5 80 2-86 107-186 (605)
113 3o53_A Protein LRIM1, AGAP0063 98.7 6.3E-09 2.2E-13 82.6 4.6 83 3-86 119-202 (317)
114 1o6v_A Internalin A; bacterial 98.7 1.8E-08 6.1E-13 84.0 6.2 79 4-87 309-387 (466)
115 1ds9_A Outer arm dynein; leuci 98.7 2.3E-10 8E-15 85.0 -5.2 80 3-86 47-126 (198)
116 4fmz_A Internalin; leucine ric 98.7 6.9E-08 2.4E-12 77.1 8.5 80 2-86 64-143 (347)
117 1o6v_A Internalin A; bacterial 98.7 5.8E-08 2E-12 80.9 8.0 78 3-85 264-341 (466)
118 3cvr_A Invasion plasmid antige 98.6 7.9E-08 2.7E-12 82.6 8.7 56 3-66 99-154 (571)
119 3rw6_A Nuclear RNA export fact 98.6 1.6E-08 5.5E-13 79.0 3.6 67 2-70 168-238 (267)
120 3bz5_A Internalin-J, INLJ; leu 98.6 7.1E-08 2.4E-12 80.6 7.6 62 2-69 189-250 (457)
121 3cvr_A Invasion plasmid antige 98.6 6E-08 2.1E-12 83.3 6.7 76 4-87 160-242 (571)
122 3bz5_A Internalin-J, INLJ; leu 98.6 1.7E-07 5.9E-12 78.3 9.0 78 2-87 168-245 (457)
123 1jl5_A Outer protein YOPM; leu 98.5 2.3E-07 8E-12 77.4 8.5 75 4-85 131-205 (454)
124 3g06_A SSPH2 (leucine-rich rep 98.5 3E-07 1E-11 79.8 8.6 76 4-88 221-297 (622)
125 4ay9_X Follicle-stimulating ho 98.5 8.6E-08 2.9E-12 77.1 4.5 65 4-69 30-97 (350)
126 1ds9_A Outer arm dynein; leuci 98.5 4.4E-09 1.5E-13 78.0 -3.1 82 3-87 17-105 (198)
127 2ca6_A RAN GTPase-activating p 98.4 9.8E-09 3.3E-13 83.5 -2.1 87 3-89 215-317 (386)
128 2ast_B S-phase kinase-associat 98.4 1.4E-08 4.6E-13 80.8 -2.1 39 24-62 114-152 (336)
129 4ay9_X Follicle-stimulating ho 98.4 2.9E-07 9.9E-12 74.0 5.7 69 2-70 52-122 (350)
130 3goz_A Leucine-rich repeat-con 98.4 6.1E-08 2.1E-12 78.3 1.4 65 5-69 23-97 (362)
131 2ast_B S-phase kinase-associat 98.4 2.2E-08 7.4E-13 79.6 -1.5 84 2-85 116-205 (336)
132 3g06_A SSPH2 (leucine-rich rep 98.4 2.9E-07 1E-11 79.8 5.1 65 2-71 239-303 (622)
133 1jl5_A Outer protein YOPM; leu 98.3 1.4E-06 4.7E-11 72.7 8.3 18 48-65 233-250 (454)
134 2ca6_A RAN GTPase-activating p 98.3 6E-08 2E-12 78.8 -0.4 61 4-64 159-228 (386)
135 3goz_A Leucine-rich repeat-con 98.3 1.1E-07 3.6E-12 76.9 -0.2 82 5-86 52-149 (362)
136 3rw6_A Nuclear RNA export fact 98.2 1.1E-07 3.9E-12 74.1 -0.7 64 25-90 167-234 (267)
137 1z7x_W Ribonuclease inhibitor; 98.0 2.7E-07 9.2E-12 76.2 -2.4 64 3-66 283-355 (461)
138 3rfe_A Platelet glycoprotein I 97.8 3.5E-05 1.2E-09 53.4 5.6 55 8-64 12-67 (130)
139 1z7x_W Ribonuclease inhibitor; 97.7 2.7E-06 9.4E-11 70.1 -1.2 85 3-87 312-410 (461)
140 3un9_A NLR family member X1; l 97.7 2.1E-06 7.1E-11 70.0 -2.5 83 4-86 155-250 (372)
141 3rfe_A Platelet glycoprotein I 97.6 0.00015 5.1E-09 50.2 6.7 61 31-93 11-73 (130)
142 3ogk_B Coronatine-insensitive 97.5 1.2E-05 4E-10 68.4 0.1 62 4-65 463-526 (592)
143 3un9_A NLR family member X1; l 97.5 1.6E-05 5.3E-10 64.7 0.1 65 2-66 181-253 (372)
144 3sb4_A Hypothetical leucine ri 97.5 0.00012 4.2E-09 57.9 5.3 80 3-85 225-307 (329)
145 3ogk_B Coronatine-insensitive 97.4 8.9E-06 3E-10 69.2 -2.8 65 2-66 162-234 (592)
146 2p1m_B Transport inhibitor res 97.3 9.6E-06 3.3E-10 68.9 -3.2 60 27-86 455-517 (594)
147 3sb4_A Hypothetical leucine ri 97.2 0.00043 1.5E-08 54.8 5.1 66 2-69 248-314 (329)
148 1io0_A Tropomodulin; LRR prote 97.1 9.6E-05 3.3E-09 54.0 0.8 85 2-86 34-134 (185)
149 2p1m_B Transport inhibitor res 97.0 5.7E-05 1.9E-09 64.1 -1.4 64 3-66 104-170 (594)
150 2ra8_A Uncharacterized protein 97.0 4.9E-05 1.7E-09 61.7 -1.8 85 2-86 217-318 (362)
151 1io0_A Tropomodulin; LRR prote 96.9 0.00017 5.8E-09 52.7 0.2 84 3-86 64-162 (185)
152 2ra8_A Uncharacterized protein 96.0 0.0013 4.3E-08 53.3 0.4 84 3-86 192-290 (362)
153 3e4g_A ATP synthase subunit S, 95.6 0.0028 9.4E-08 46.2 0.7 59 5-63 62-125 (176)
154 4fdw_A Leucine rich hypothetic 95.1 0.037 1.3E-06 45.2 6.1 55 5-60 249-308 (401)
155 3e4g_A ATP synthase subunit S, 95.1 0.0024 8.2E-08 46.5 -0.9 62 2-63 83-150 (176)
156 4fdw_A Leucine rich hypothetic 93.9 0.065 2.2E-06 43.7 4.8 59 2-62 178-236 (401)
157 1pgv_A TMD-1, tropomodulin TMD 93.0 0.035 1.2E-06 41.0 1.7 62 4-65 41-111 (197)
158 2ks1_B Epidermal growth factor 92.1 0.17 5.8E-06 27.9 3.2 27 127-153 13-39 (44)
159 1pgv_A TMD-1, tropomodulin TMD 92.0 0.042 1.4E-06 40.6 0.9 60 4-63 70-137 (197)
160 2k1k_A Ephrin type-A receptor 91.1 0.17 5.9E-06 26.9 2.5 23 126-148 11-33 (38)
161 2jwa_A Receptor tyrosine-prote 91.0 0.13 4.5E-06 28.3 2.0 26 127-152 13-38 (44)
162 4h09_A Hypothetical leucine ri 90.2 0.34 1.2E-05 38.5 4.8 59 2-62 261-320 (379)
163 4fs7_A Uncharacterized protein 89.9 0.28 9.5E-06 39.4 4.0 58 2-62 295-353 (394)
164 4gt6_A Cell surface protein; l 89.0 0.69 2.4E-05 37.1 5.7 80 2-86 286-368 (394)
165 2l2t_A Receptor tyrosine-prote 88.5 0.24 8.1E-06 27.2 1.8 25 129-153 14-38 (44)
166 4fs7_A Uncharacterized protein 87.7 0.77 2.6E-05 36.8 5.2 56 3-62 275-330 (394)
167 4gt6_A Cell surface protein; l 87.3 1.4 4.7E-05 35.2 6.5 59 2-62 263-321 (394)
168 4h09_A Hypothetical leucine ri 86.0 1.5 5.3E-05 34.6 6.1 62 2-65 238-299 (379)
169 2k9y_A Ephrin type-A receptor 67.9 2.4 8.3E-05 22.5 1.5 10 128-137 16-25 (41)
170 1iij_A ERBB-2 receptor protein 67.0 1.2 4E-05 23.2 0.0 24 128-151 10-33 (35)
171 2knc_B Integrin beta-3; transm 65.5 5.8 0.0002 24.5 3.0 15 154-168 42-56 (79)
172 2l34_A TYRO protein tyrosine k 59.6 7 0.00024 19.8 2.2 24 126-149 7-30 (33)
173 2l9u_A Receptor tyrosine-prote 57.3 7.5 0.00026 19.9 2.0 24 127-150 8-31 (40)
174 2l8s_A Integrin alpha-1; trans 51.1 3 0.0001 23.8 -0.1 10 126-135 10-19 (54)
175 2k1a_A Integrin alpha-IIB; sin 49.5 11 0.00038 20.2 2.0 10 126-135 11-20 (42)
176 2knc_A Integrin alpha-IIB; tra 39.7 15 0.00052 20.9 1.7 11 126-136 13-23 (54)
177 2lz0_A Uncharacterized protein 29.3 1.1E+02 0.0037 19.2 5.0 39 22-61 14-52 (100)
178 2klu_A T-cell surface glycopro 27.5 43 0.0015 19.8 2.3 9 132-140 13-21 (70)
179 1cd1_A CD1, MCD1D.1; immunolog 23.3 17 0.00059 28.2 0.0 10 145-154 302-311 (315)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=2.1e-18 Score=152.65 Aligned_cols=98 Identities=39% Similarity=0.665 Sum_probs=89.2
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
+++.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|...++.++....
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~ 733 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ccCCcCCCCCCCCCCCCCC
Q 045886 82 YAGNLELCGLPLANMCPDE 100 (184)
Q Consensus 82 ~~~N~~lc~~~~~~~C~~~ 100 (184)
+.||+++||.|+. .|...
T Consensus 734 ~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 734 FLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GCSCTEEESTTSC-CCCSC
T ss_pred hcCCchhcCCCCc-CCCCC
Confidence 9999999999886 78644
No 2
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=4.2e-15 Score=110.69 Aligned_cols=92 Identities=26% Similarity=0.257 Sum_probs=81.5
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.++.|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|++|++++|++++.+|.. ..+.++..+
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 4678999999999999888889999999999999999999877778999999999999999999888765 567788899
Q ss_pred cccCCcCCCCCCC
Q 045886 81 VYAGNLELCGLPL 93 (184)
Q Consensus 81 ~~~~N~~lc~~~~ 93 (184)
++.+|++.|.++.
T Consensus 132 ~L~~N~l~c~c~l 144 (192)
T 1w8a_A 132 NLASNPFNCNCHL 144 (192)
T ss_dssp ECTTCCBCCSGGG
T ss_pred EeCCCCccCcCcc
Confidence 9999999998754
No 3
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=2.4e-14 Score=104.68 Aligned_cols=89 Identities=21% Similarity=0.142 Sum_probs=80.1
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~ 82 (184)
+.|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|++++|++++..+.. ..+.++..+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 57899999999999887888999999999999999999666667899999999999999999887763 67889999999
Q ss_pred cCCcCCCCCC
Q 045886 83 AGNLELCGLP 92 (184)
Q Consensus 83 ~~N~~lc~~~ 92 (184)
.+|++.|.|+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999999874
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=107.65 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=78.1
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+++.|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence 4678899999999999776777999999999999999999777778999999999999999998766643 567788889
Q ss_pred cccCCcCCCCCCC
Q 045886 81 VYAGNLELCGLPL 93 (184)
Q Consensus 81 ~~~~N~~lc~~~~ 93 (184)
++.+|++.|+|.+
T Consensus 132 ~L~~N~~~C~c~l 144 (193)
T 2wfh_A 132 AIGANPLYCDCNM 144 (193)
T ss_dssp ECCSSCEECSGGG
T ss_pred EeCCCCeecCCcC
Confidence 9999999998753
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=6.5e-15 Score=117.43 Aligned_cols=94 Identities=38% Similarity=0.608 Sum_probs=85.5
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
++++|+.|+|++|.+++.+|. +..+++|++|++++|.++|.+|..+..+++|+.|++++|+++|.+|....+.++..++
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence 578899999999999976665 8889999999999999999999999999999999999999999999988899999999
Q ss_pred ccCCcCCCCCCCCCCC
Q 045886 82 YAGNLELCGLPLANMC 97 (184)
Q Consensus 82 ~~~N~~lc~~~~~~~C 97 (184)
+.+|+++||.|+. .|
T Consensus 298 l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 298 YANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCSSSEEESTTSS-CC
T ss_pred hcCCCCccCCCCC-CC
Confidence 9999999997765 45
No 6
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=1.8e-14 Score=123.34 Aligned_cols=92 Identities=24% Similarity=0.205 Sum_probs=83.4
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-ccc-ccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQL-QSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l-~~l~~ 79 (184)
.+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|+.||+++|++++.+|.. ..+ .++..
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 5788999999999999888899999999999999999999888888999999999999999999998876 334 67889
Q ss_pred ccccCCcCCCCCCC
Q 045886 80 SVYAGNLELCGLPL 93 (184)
Q Consensus 80 ~~~~~N~~lc~~~~ 93 (184)
+++++||+.|+|.+
T Consensus 572 L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 572 LNLTQNDFACTCEH 585 (635)
T ss_dssp EECTTCCBCCSGGG
T ss_pred EEeeCCCCcccCCc
Confidence 99999999999853
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=108.69 Aligned_cols=91 Identities=23% Similarity=0.171 Sum_probs=67.1
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|.. ..+.++..+
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 4566777777777777655556777777777777777777666777777777788888888777776654 456677777
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+|++.|.|+
T Consensus 159 ~L~~N~l~c~c~ 170 (220)
T 2v70_A 159 NLLANPFNCNCY 170 (220)
T ss_dssp ECCSCCEECSGG
T ss_pred EecCcCCcCCCc
Confidence 888888888765
No 8
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=4.7e-14 Score=103.58 Aligned_cols=89 Identities=19% Similarity=0.109 Sum_probs=78.9
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~ 82 (184)
+.|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++++.++. ...+.++..+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5789999999999988888999999999999999999965555678999999999999999987776 367888999999
Q ss_pred cCCcCCCCCC
Q 045886 83 AGNLELCGLP 92 (184)
Q Consensus 83 ~~N~~lc~~~ 92 (184)
.+|++.|.|.
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999999764
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=3.1e-14 Score=127.21 Aligned_cols=87 Identities=25% Similarity=0.226 Sum_probs=62.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|.. +.++..+++
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l 554 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDI 554 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEE
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEe
Confidence 45666777777777766666677777777777777777754444443 67777777777777777653 557788899
Q ss_pred cCCcCCCCCCC
Q 045886 83 AGNLELCGLPL 93 (184)
Q Consensus 83 ~~N~~lc~~~~ 93 (184)
.+||+.|.|+.
T Consensus 555 ~~Np~~C~c~~ 565 (844)
T 3j0a_A 555 THNKFICECEL 565 (844)
T ss_dssp EEECCCCSSSC
T ss_pred cCCCccccccc
Confidence 99999998864
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=9e-14 Score=105.61 Aligned_cols=92 Identities=23% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|++|+|++|+++...+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 4566677777777777333333566777777777777777666666777777777777777777666543 456677777
Q ss_pred cccCCcCCCCCCC
Q 045886 81 VYAGNLELCGLPL 93 (184)
Q Consensus 81 ~~~~N~~lc~~~~ 93 (184)
++.+|++.|.|.+
T Consensus 158 ~L~~N~~~c~c~l 170 (220)
T 2v9t_B 158 HLAQNPFICDCHL 170 (220)
T ss_dssp ECCSSCEECSGGG
T ss_pred EeCCCCcCCCCcc
Confidence 8888888887643
No 11
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=7.2e-14 Score=112.42 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=80.2
Q ss_pred CCcCCceeeecc-CCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886 2 DLVGLIAVNLSR-NNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~ 80 (184)
.+++|+.|+|++ |+|++..|..|.+|++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++.++.......|..+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEE
Confidence 467899999996 9999777788999999999999999999888889999999999999999999877765433348889
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
.+.+|++.|.|.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999999875
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2.8e-13 Score=103.40 Aligned_cols=90 Identities=23% Similarity=0.242 Sum_probs=65.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 4566777777777777544455677777777777777777 67777777788888888888887665543 456777788
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+|++.|.|+
T Consensus 165 ~l~~N~~~c~c~ 176 (229)
T 3e6j_A 165 YLFGNPWDCECR 176 (229)
T ss_dssp ECTTSCBCTTBG
T ss_pred EeeCCCccCCcc
Confidence 888888888764
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.45 E-value=1.1e-13 Score=122.37 Aligned_cols=87 Identities=33% Similarity=0.481 Sum_probs=81.3
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+++.|+.|||++|+++|.+|..+++++.|+.|+|++|+++|.+|..++.+++|+.||+++|+++|.+|.. ..++.+..+
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999987 678888999
Q ss_pred cccCCcCC
Q 045886 81 VYAGNLEL 88 (184)
Q Consensus 81 ~~~~N~~l 88 (184)
++++|+..
T Consensus 710 ~ls~N~l~ 717 (768)
T 3rgz_A 710 DLSNNNLS 717 (768)
T ss_dssp ECCSSEEE
T ss_pred ECcCCccc
Confidence 99988754
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=4.1e-13 Score=98.20 Aligned_cols=89 Identities=22% Similarity=0.172 Sum_probs=42.6
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+++|++|+|++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.++.. ..+.++..++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 344555555555555333333445555555555555555333333445555555555555555433332 2344455555
Q ss_pred ccCCcCCCCC
Q 045886 82 YAGNLELCGL 91 (184)
Q Consensus 82 ~~~N~~lc~~ 91 (184)
+.+|++.|.+
T Consensus 131 l~~N~~~~~~ 140 (177)
T 2o6r_A 131 LHTNPWDCSC 140 (177)
T ss_dssp CCSSCBCCCH
T ss_pred ecCCCeeccC
Confidence 5555555543
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=2e-12 Score=96.79 Aligned_cols=91 Identities=25% Similarity=0.190 Sum_probs=57.1
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 3456666666666666444444566666666666666666444444666667777777777766555542 445666777
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+|++.|.++
T Consensus 154 ~l~~N~~~~~~~ 165 (208)
T 2o6s_A 154 WLHDNPWDCTCP 165 (208)
T ss_dssp ECCSCCBCCCTT
T ss_pred EecCCCeecCCC
Confidence 777777777654
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=2.3e-12 Score=99.29 Aligned_cols=89 Identities=24% Similarity=0.229 Sum_probs=54.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 3455666666666666443344566666666666666666444445666666667777777666555533 445666667
Q ss_pred cccCCcCCCC
Q 045886 81 VYAGNLELCG 90 (184)
Q Consensus 81 ~~~~N~~lc~ 90 (184)
++.+|++.|.
T Consensus 185 ~l~~N~~~c~ 194 (251)
T 3m19_A 185 TLFGNQFDCS 194 (251)
T ss_dssp ECCSCCBCTT
T ss_pred EeeCCceeCC
Confidence 7777777765
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=2.5e-12 Score=100.33 Aligned_cols=91 Identities=26% Similarity=0.206 Sum_probs=62.5
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+.++..+
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 3566777777777777554455667777777777777777555555667777777777777777666653 456677777
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+|++.|.++
T Consensus 211 ~l~~N~~~~~~~ 222 (272)
T 3rfs_A 211 WLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCCccccCc
Confidence 788888877664
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.36 E-value=3.8e-12 Score=99.10 Aligned_cols=91 Identities=22% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 3455666666666666333334566666666666666666444445666666666676666666544432 345666677
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+||+.|.|.
T Consensus 211 ~l~~N~~~c~c~ 222 (270)
T 2o6q_A 211 QLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCBCCSSS
T ss_pred EecCCCeeCCCc
Confidence 777777777654
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=108.78 Aligned_cols=92 Identities=20% Similarity=0.117 Sum_probs=79.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+++|+.|+|++|.+++..|..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 4677888899999998777888999999999999999999877888999999999999999999777665 567888899
Q ss_pred cccCCcCCCCCCC
Q 045886 81 VYAGNLELCGLPL 93 (184)
Q Consensus 81 ~~~~N~~lc~~~~ 93 (184)
++.+||+.|+|.+
T Consensus 285 ~L~~Np~~CdC~l 297 (440)
T 3zyj_A 285 HLHHNPWNCNCDI 297 (440)
T ss_dssp ECCSSCEECSSTT
T ss_pred EcCCCCccCCCCc
Confidence 9999999998853
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.35 E-value=3.3e-12 Score=100.83 Aligned_cols=89 Identities=20% Similarity=0.081 Sum_probs=42.8
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++..++.......+..+.+.
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 34444444444444322233344444444444444444222223344444555555555554322222334456667788
Q ss_pred CCcCCCCCC
Q 045886 84 GNLELCGLP 92 (184)
Q Consensus 84 ~N~~lc~~~ 92 (184)
+||+.|.|.
T Consensus 204 ~Np~~C~c~ 212 (290)
T 1p9a_G 204 GNPWLCNCE 212 (290)
T ss_dssp SCCBCCSGG
T ss_pred CCCccCcCc
Confidence 999999774
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=1.5e-12 Score=108.39 Aligned_cols=92 Identities=24% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+.+|+.|+|++|.+++..|..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 4667888889999998777888999999999999999999888888999999999999999999777655 567888899
Q ss_pred cccCCcCCCCCCC
Q 045886 81 VYAGNLELCGLPL 93 (184)
Q Consensus 81 ~~~~N~~lc~~~~ 93 (184)
++.+||+.|.|..
T Consensus 296 ~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 296 HLHHNPWNCDCDI 308 (452)
T ss_dssp ECCSSCEECSTTT
T ss_pred EccCCCcCCCCCc
Confidence 9999999998864
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.32 E-value=3e-12 Score=106.14 Aligned_cols=91 Identities=27% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|+.|+|++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++.++.. ..+.++..+
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 4677888888888887666777888888888888888888777788888888888888888888766554 567788888
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+|+..|.|+
T Consensus 401 ~l~~N~l~~~~~ 412 (455)
T 3v47_A 401 WLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCCcccCCC
Confidence 899999999876
No 23
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=7e-12 Score=95.09 Aligned_cols=86 Identities=19% Similarity=0.084 Sum_probs=62.2
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|.. ..+.++..+
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 4567777888888777655556777788888888888887666666777778888888888887776654 456667777
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|..
T Consensus 135 ~L~~N~l 141 (220)
T 2v70_A 135 SLYDNQI 141 (220)
T ss_dssp ECTTSCC
T ss_pred ECCCCcC
Confidence 7777643
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=3.6e-12 Score=109.34 Aligned_cols=92 Identities=22% Similarity=0.164 Sum_probs=78.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccc-cCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQ-SFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~-~l~~~ 80 (184)
.+++|+.|+|++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++..++....+. ++..+
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence 56889999999999998888889999999999999999998888999999999999999999985444434554 58889
Q ss_pred cccCCcCCCCCCC
Q 045886 81 VYAGNLELCGLPL 93 (184)
Q Consensus 81 ~~~~N~~lc~~~~ 93 (184)
++.+||+.|+|+.
T Consensus 551 ~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 551 NLTNNSVACICEH 563 (606)
T ss_dssp ECCSCCCCCSSTT
T ss_pred EccCCCcccCCcc
Confidence 9999999998865
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=1.2e-11 Score=93.86 Aligned_cols=83 Identities=23% Similarity=0.144 Sum_probs=37.7
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+++|+.|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|+.|++++|++++..|.. ..+.++..++
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 344444555555554444444445555555555555554222222344445555555555554444332 2334444444
Q ss_pred ccCC
Q 045886 82 YAGN 85 (184)
Q Consensus 82 ~~~N 85 (184)
+.+|
T Consensus 135 L~~N 138 (220)
T 2v9t_B 135 LYDN 138 (220)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 4444
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.28 E-value=2.8e-12 Score=100.42 Aligned_cols=90 Identities=24% Similarity=0.188 Sum_probs=54.4
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+++|+.|+|++|++++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..+.++..++
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 455566666666665333334555666666666666666555666666666666666666666544432 4456666777
Q ss_pred ccCCcCCCCCC
Q 045886 82 YAGNLELCGLP 92 (184)
Q Consensus 82 ~~~N~~lc~~~ 92 (184)
+.+|++.|.|+
T Consensus 232 l~~N~~~c~~~ 242 (285)
T 1ozn_A 232 LNDNPWVCDCR 242 (285)
T ss_dssp CCSSCEECSGG
T ss_pred ccCCCccCCCC
Confidence 77777777664
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=7.3e-12 Score=98.89 Aligned_cols=89 Identities=25% Similarity=0.211 Sum_probs=48.9
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-ccc-ccCCcc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQL-QSFNAS 80 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l-~~l~~~ 80 (184)
+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|.. ..+ .++..+
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 445555566655555444555555556666666666655444445555556666666666665555443 222 345555
Q ss_pred cccCCcCCCCC
Q 045886 81 VYAGNLELCGL 91 (184)
Q Consensus 81 ~~~~N~~lc~~ 91 (184)
++.+|++.|.|
T Consensus 254 ~L~~N~~~~~c 264 (306)
T 2z66_A 254 NLTQNDFACTC 264 (306)
T ss_dssp ECTTCCEECSG
T ss_pred EccCCCeeccc
Confidence 56666655554
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.4e-11 Score=90.41 Aligned_cols=84 Identities=26% Similarity=0.263 Sum_probs=74.7
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~ 82 (184)
..|+.|+|++|+++ .+|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|.. ..+.++..+++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46899999999999 88989999999999999999999777788999999999999999999888754 66788888999
Q ss_pred cCCcCC
Q 045886 83 AGNLEL 88 (184)
Q Consensus 83 ~~N~~l 88 (184)
.+|...
T Consensus 110 ~~N~l~ 115 (193)
T 2wfh_A 110 HGNDIS 115 (193)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 888654
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.24 E-value=5.1e-12 Score=108.38 Aligned_cols=90 Identities=26% Similarity=0.217 Sum_probs=79.3
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++.+|.. ..+..+..+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 46788999999999998788889999999999999999998888899999999 9999999999887765 567888999
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+||+.|.|+
T Consensus 553 ~l~~N~~~c~c~ 564 (606)
T 3t6q_A 553 NLRQNPLDCTCS 564 (606)
T ss_dssp ECTTCCEECSGG
T ss_pred eCCCCCccccCC
Confidence 999999999875
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.24 E-value=4e-12 Score=101.19 Aligned_cols=83 Identities=40% Similarity=0.613 Sum_probs=39.8
Q ss_pred CcCCceeeecc-CCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 3 LVGLIAVNLSR-NNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 3 l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++.|++|+|++ |.+.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+.++..+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 34455555552 5555455555555555555555555555444544555555555555555554444432 333444444
Q ss_pred cccCC
Q 045886 81 VYAGN 85 (184)
Q Consensus 81 ~~~~N 85 (184)
++.+|
T Consensus 155 ~L~~N 159 (313)
T 1ogq_A 155 TFDGN 159 (313)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 44443
No 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=4.7e-12 Score=94.04 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=72.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
+++.|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+.......+....
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~ 155 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 155 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcC
Confidence 57889999999999998888889999999999999999999889999999999999999999998766432111222223
Q ss_pred ccCCcCCCCCC
Q 045886 82 YAGNLELCGLP 92 (184)
Q Consensus 82 ~~~N~~lc~~~ 92 (184)
+.++...|+.|
T Consensus 156 ~~~~~~~C~~P 166 (192)
T 1w8a_A 156 LNGGAARCGAP 166 (192)
T ss_dssp CSGGGCBBCSS
T ss_pred CCCCCCCCCCC
Confidence 44555566543
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=105.16 Aligned_cols=92 Identities=25% Similarity=0.290 Sum_probs=70.3
Q ss_pred CCcCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886 2 DLVGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~ 79 (184)
++++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+.++..
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 4567777777777776 567777778888888888888888766777888888888888888888776654 56677788
Q ss_pred ccccCCcCCCCCCC
Q 045886 80 SVYAGNLELCGLPL 93 (184)
Q Consensus 80 ~~~~~N~~lc~~~~ 93 (184)
+++.+|++.|.|+.
T Consensus 523 L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 523 IWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCBCCCTTT
T ss_pred EEecCCcccCCCcc
Confidence 88888888887653
No 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=5.3e-11 Score=90.68 Aligned_cols=84 Identities=20% Similarity=0.116 Sum_probs=58.7
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~ 82 (184)
++|+.|+|++|++++..|..|..+++|+.|++++|+++...+..|..+++|+.|++++|++++..+.. ..+.++..+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45777788888777666777777777777788777777443455677777777777777777665543 45666666666
Q ss_pred cCCcC
Q 045886 83 AGNLE 87 (184)
Q Consensus 83 ~~N~~ 87 (184)
.+|..
T Consensus 120 s~N~l 124 (229)
T 3e6j_A 120 CCNKL 124 (229)
T ss_dssp CSSCC
T ss_pred cCCcc
Confidence 66654
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.22 E-value=3.5e-11 Score=96.48 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=61.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+++|++|+|++|.++ .+|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+.+|.. ..+.++..++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 667777788777777 77777777777777777777777 46666777777777777777777777764 4566666677
Q ss_pred ccCCcCCC
Q 045886 82 YAGNLELC 89 (184)
Q Consensus 82 ~~~N~~lc 89 (184)
+.+|....
T Consensus 260 L~~n~~~~ 267 (328)
T 4fcg_A 260 LKDCSNLL 267 (328)
T ss_dssp CTTCTTCC
T ss_pred CCCCCchh
Confidence 76665433
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=103.18 Aligned_cols=91 Identities=22% Similarity=0.174 Sum_probs=79.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|+.|+|++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 5678999999999999777777899999999999999999888889999999999999999999876654 567788999
Q ss_pred cccCCcCCCCCC
Q 045886 81 VYAGNLELCGLP 92 (184)
Q Consensus 81 ~~~~N~~lc~~~ 92 (184)
++.+|++.|.|.
T Consensus 326 ~l~~N~l~c~c~ 337 (477)
T 2id5_A 326 ILDSNPLACDCR 337 (477)
T ss_dssp ECCSSCEECSGG
T ss_pred EccCCCccCccc
Confidence 999999999874
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=2.2e-11 Score=105.86 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=75.0
Q ss_pred CCcCCceeeeccCCCCCCCCc-ccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-c-ccccCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITP-KIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-T-QLQSFN 78 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~-~l~~l~ 78 (184)
++++|+.|+|++|+++ .+|. .|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..|.. . .+.++.
T Consensus 534 ~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 534 GLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred CCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 4577888888888888 5665 5888999999999999999555556788899999999999999877654 2 578889
Q ss_pred cccccCCcCCCCCCC
Q 045886 79 ASVYAGNLELCGLPL 93 (184)
Q Consensus 79 ~~~~~~N~~lc~~~~ 93 (184)
.+++.+||+.|+|+.
T Consensus 613 ~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 613 ELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECTTCCCCBCCCC
T ss_pred EEEccCCCcccCCcc
Confidence 999999999999864
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.21 E-value=6.1e-11 Score=91.29 Aligned_cols=84 Identities=23% Similarity=0.160 Sum_probs=48.8
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+++|++|+|++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+.. ..+.++..++
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 455666666666666555555666666666666666666444445556666666666666666554443 3455555555
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+.+|.
T Consensus 138 Ls~N~ 142 (251)
T 3m19_A 138 LNTNQ 142 (251)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 55553
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.21 E-value=7.5e-11 Score=88.15 Aligned_cols=83 Identities=23% Similarity=0.169 Sum_probs=47.1
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~ 82 (184)
+.|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+.. ..+.++..+++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34566666666666444444566666666666666666433344556666666666666666544432 34455555555
Q ss_pred cCCc
Q 045886 83 AGNL 86 (184)
Q Consensus 83 ~~N~ 86 (184)
.+|.
T Consensus 108 ~~N~ 111 (208)
T 2o6s_A 108 NTNQ 111 (208)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5553
No 39
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=2.4e-11 Score=86.21 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=65.9
Q ss_pred CcCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 3 LVGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|.. ..+.++..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466888888888888 78888888888888888888888854 66788888888888888888766655 346777888
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++++|..
T Consensus 94 ~ls~N~i 100 (149)
T 2je0_A 94 NLSGNKI 100 (149)
T ss_dssp ECTTSCC
T ss_pred ECCCCcC
Confidence 8877753
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.19 E-value=4.5e-11 Score=95.81 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=77.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|+.|+|++|.++ .+|+.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.. ..+.++..+
T Consensus 204 ~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 5778999999999999 57778999999999999999999999999999999999999999999999865 677888888
Q ss_pred cccCCcCCCC
Q 045886 81 VYAGNLELCG 90 (184)
Q Consensus 81 ~~~~N~~lc~ 90 (184)
++.+|+....
T Consensus 283 ~L~~n~~~~~ 292 (328)
T 4fcg_A 283 DLRGCVNLSR 292 (328)
T ss_dssp ECTTCTTCCC
T ss_pred eCCCCCchhh
Confidence 9988876554
No 41
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.3e-10 Score=84.69 Aligned_cols=85 Identities=20% Similarity=0.130 Sum_probs=72.8
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
.++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.++.. ..+.++..++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 357899999999999666666899999999999999999665566899999999999999999877764 5678888899
Q ss_pred ccCCcC
Q 045886 82 YAGNLE 87 (184)
Q Consensus 82 ~~~N~~ 87 (184)
+.+|..
T Consensus 107 l~~N~l 112 (177)
T 2o6r_A 107 LDTNQL 112 (177)
T ss_dssp CCSSCC
T ss_pred CcCCcc
Confidence 988854
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=3.8e-11 Score=86.82 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=44.4
Q ss_pred cCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCcc-ccccCCccc
Q 045886 4 VGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGT-QLQSFNASV 81 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~-~l~~l~~~~ 81 (184)
+.|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|... .+..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44566666666665 55555555566666666666665532 445555566666666666655444432 245555555
Q ss_pred ccCC
Q 045886 82 YAGN 85 (184)
Q Consensus 82 ~~~N 85 (184)
+.+|
T Consensus 102 Ls~N 105 (168)
T 2ell_A 102 LSGN 105 (168)
T ss_dssp CBSS
T ss_pred ccCC
Confidence 5554
No 43
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=3.1e-11 Score=87.35 Aligned_cols=85 Identities=21% Similarity=0.172 Sum_probs=70.3
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC--CCccccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI--PLGTQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~--p~~~~l~~l~~ 79 (184)
.+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.. +....+..+..
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 467899999999999854 77889999999999999999778888888999999999999998754 33356777888
Q ss_pred ccccCCcCC
Q 045886 80 SVYAGNLEL 88 (184)
Q Consensus 80 ~~~~~N~~l 88 (184)
+++.+|+..
T Consensus 125 L~l~~N~l~ 133 (168)
T 2ell_A 125 LDLFNCEVT 133 (168)
T ss_dssp EECCSSGGG
T ss_pred EEeeCCcCc
Confidence 888888653
No 44
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=5.6e-11 Score=102.12 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=46.8
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC-CCc-cccccCCcc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI-PLG-TQLQSFNAS 80 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~-p~~-~~l~~l~~~ 80 (184)
+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|.|++ +| .++.+++|+.|++++|++++.+ |.. ..+.+|..+
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 445566666666666 555566666666666666666663 45 5556666666666666666553 332 445555555
Q ss_pred cccCCc
Q 045886 81 VYAGNL 86 (184)
Q Consensus 81 ~~~~N~ 86 (184)
++.+|+
T Consensus 539 ~L~~N~ 544 (567)
T 1dce_A 539 NLQGNS 544 (567)
T ss_dssp ECTTSG
T ss_pred EecCCc
Confidence 555554
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.16 E-value=1.5e-10 Score=90.15 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=62.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|++|+|++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..+.. ..+.++..+
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 4677888888888888655566777888888888888888655566777888888888888887666654 456667777
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|..
T Consensus 163 ~l~~n~l 169 (272)
T 3rfs_A 163 DLSYNQL 169 (272)
T ss_dssp ECCSSCC
T ss_pred ECCCCCc
Confidence 7776643
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.16 E-value=4e-11 Score=89.16 Aligned_cols=83 Identities=25% Similarity=0.338 Sum_probs=42.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|....+.++..+++
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l 166 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEEC
Confidence 44555555555555544455555555555555555555544455555555555555555552223333344444555555
Q ss_pred cCC
Q 045886 83 AGN 85 (184)
Q Consensus 83 ~~N 85 (184)
.+|
T Consensus 167 ~~n 169 (197)
T 4ezg_A 167 QFD 169 (197)
T ss_dssp TTB
T ss_pred CCC
Confidence 444
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.15 E-value=6e-11 Score=101.44 Aligned_cols=84 Identities=23% Similarity=0.158 Sum_probs=40.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+++|++|||++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..+.. ..+.+++.++
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 444555555555555333334555555555555555555333334455555555555555555443332 3344444444
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+.+|.
T Consensus 155 Ls~N~ 159 (635)
T 4g8a_A 155 VAHNL 159 (635)
T ss_dssp CCSSC
T ss_pred cccCc
Confidence 44443
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=7.5e-11 Score=100.61 Aligned_cols=64 Identities=25% Similarity=0.260 Sum_probs=50.6
Q ss_pred CCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCcccccCCcCCCCCC
Q 045886 28 TSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVYAGNLELCGLP 92 (184)
Q Consensus 28 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~~~N~~lc~~~ 92 (184)
++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...+..+..+++.+|++.|.|+
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 56777777777777 7777777888999999999999854444 3567788888899999999774
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=2.2e-10 Score=90.28 Aligned_cols=85 Identities=26% Similarity=0.143 Sum_probs=56.6
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 4566777777777777 66766777777777777777777555566777777777777777777655543 345566666
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|..
T Consensus 154 ~L~~N~l 160 (290)
T 1p9a_G 154 SLANNNL 160 (290)
T ss_dssp ECTTSCC
T ss_pred ECCCCcC
Confidence 6666543
No 50
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=9.7e-11 Score=83.02 Aligned_cols=84 Identities=20% Similarity=0.141 Sum_probs=72.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC--CCccccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI--PLGTQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~--p~~~~l~~l~~ 79 (184)
.+++|+.|++++|.+++. ..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++.. +....+..+..
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 578899999999999955 77999999999999999999879998888999999999999998743 33466778888
Q ss_pred ccccCCcC
Q 045886 80 SVYAGNLE 87 (184)
Q Consensus 80 ~~~~~N~~ 87 (184)
+++.+|+.
T Consensus 118 L~l~~N~l 125 (149)
T 2je0_A 118 LDLFNCEV 125 (149)
T ss_dssp EECTTCGG
T ss_pred EeCcCCcc
Confidence 88888853
No 51
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=8.8e-11 Score=103.55 Aligned_cols=83 Identities=25% Similarity=0.178 Sum_probs=52.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
++.|++|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..++.+++|++|+|++|.++..++....+.+|..+++
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEEC
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeC
Confidence 456666666666666 66666666666666666666666 6666666666666666666666533222345556666666
Q ss_pred cCCcC
Q 045886 83 AGNLE 87 (184)
Q Consensus 83 ~~N~~ 87 (184)
.+|+.
T Consensus 324 ~~N~l 328 (727)
T 4b8c_D 324 EGNPL 328 (727)
T ss_dssp TTSCC
T ss_pred CCCcc
Confidence 66654
No 52
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=1.9e-10 Score=83.79 Aligned_cols=69 Identities=23% Similarity=0.169 Sum_probs=60.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL 70 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~ 70 (184)
++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|+.|++++|.+....+.
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 578999999999999966666689999999999999999966666799999999999999999877654
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=97.72 Aligned_cols=85 Identities=27% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCccccc
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVYA 83 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~~ 83 (184)
+|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+. ...+.++..+++.
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 344444444444433333332 56777777777777 6777777888888888888888854433 3456777788888
Q ss_pred CCcCCCCCC
Q 045886 84 GNLELCGLP 92 (184)
Q Consensus 84 ~N~~lc~~~ 92 (184)
+|++.|.|+
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 888888764
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=1.1e-10 Score=94.58 Aligned_cols=85 Identities=24% Similarity=0.159 Sum_probs=44.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++.+|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|++++|++++..|.. ..+..|..+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 3455555555555555444444555555555555555555433344555555555555555555444432 344455555
Q ss_pred cccCCc
Q 045886 81 VYAGNL 86 (184)
Q Consensus 81 ~~~~N~ 86 (184)
++++|.
T Consensus 142 ~L~~N~ 147 (361)
T 2xot_A 142 YLSQNQ 147 (361)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 555543
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=1.5e-10 Score=93.81 Aligned_cols=65 Identities=25% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 34556666666666664444445666666666666666664445555555666666666665554
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.09 E-value=1.1e-10 Score=92.72 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCcCCceeeeccCCCCCCCCccc--CCCCCCCEeeccCCcCCCCCcccccCC-----CCCCeeeccCCCCCCCCCCc-cc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKI--GELTSLDFLDLSRNLFSGSIPSSLSQL-----SGLGVLDLSYNNSSGKIPLG-TQ 73 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~ls~N~l~g~~P~~~~~l-----~~L~~l~ls~N~l~g~~p~~-~~ 73 (184)
++++|++|+|++|.+++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|.. ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 47789999999999998899886 8899999999999999966 8877777 89999999999998877654 56
Q ss_pred cccCCcccccCCcC
Q 045886 74 LQSFNASVYAGNLE 87 (184)
Q Consensus 74 l~~l~~~~~~~N~~ 87 (184)
+.++..+++++|..
T Consensus 172 l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 172 FPALSTLDLSDNPE 185 (312)
T ss_dssp CSSCCEEECCSCTT
T ss_pred CCCCCEEECCCCCc
Confidence 77888888888763
No 57
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.09 E-value=2.5e-10 Score=99.13 Aligned_cols=83 Identities=27% Similarity=0.222 Sum_probs=65.1
Q ss_pred CcCCceeeeccCCCCCCCCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeec------cCCCCCCCCCCc-cc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDL------SYNNSSGKIPLG-TQ 73 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~l------s~N~l~g~~p~~-~~ 73 (184)
+++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|.. ..
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 447888888888888 7887776 88888888888888885 7888888888888888 457777777765 56
Q ss_pred cccCCcccccCCcC
Q 045886 74 LQSFNASVYAGNLE 87 (184)
Q Consensus 74 l~~l~~~~~~~N~~ 87 (184)
+.++..+++.+|..
T Consensus 565 l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 565 CPSLTQLQIGSNDI 578 (636)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 77777778877765
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.09 E-value=5.2e-10 Score=86.95 Aligned_cols=86 Identities=23% Similarity=0.217 Sum_probs=63.2
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..+.. ..+.++..+
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 4677888888888888555556778888888888888888666666778888888888888887665543 456667777
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|..
T Consensus 163 ~L~~n~l 169 (270)
T 2o6q_A 163 RLYNNQL 169 (270)
T ss_dssp ECCSSCC
T ss_pred EecCCcC
Confidence 7766643
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.08 E-value=2.8e-10 Score=96.34 Aligned_cols=65 Identities=26% Similarity=0.207 Sum_probs=50.6
Q ss_pred CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccCCcCCCCCC
Q 045886 26 ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAGNLELCGLP 92 (184)
Q Consensus 26 ~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~N~~lc~~~ 92 (184)
.+++|+.|++++|+++ .+|. ...+++|+.|++++|++++.+|.. ..+.++..+++++|++.|.|+
T Consensus 449 ~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 5667777777777777 6776 466788888888888888877764 567788888899999888775
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=1.8e-10 Score=95.40 Aligned_cols=84 Identities=25% Similarity=0.243 Sum_probs=46.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~ 81 (184)
+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|.. ..+.++..++
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 445555555555555444555555555556666665555444555555556666666666555554433 3445555555
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+.+|.
T Consensus 378 L~~N~ 382 (455)
T 3v47_A 378 LDTNQ 382 (455)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55554
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=3.3e-10 Score=89.78 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=41.3
Q ss_pred CcCCceeeeccCCCCCCCCcc----cCCCCCCCEeeccCCcCCCCCcccccCC---CCCCeeeccCCCCCCCCCCccccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPK----IGELTSLDFLDLSRNLFSGSIPSSLSQL---SGLGVLDLSYNNSSGKIPLGTQLQ 75 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~----~~~l~~L~~L~ls~N~l~g~~P~~~~~l---~~L~~l~ls~N~l~g~~p~~~~l~ 75 (184)
+++|++|+|++|+++ .+|.. +..+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|... ..
T Consensus 196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~~ 272 (310)
T 4glp_A 196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-PA 272 (310)
T ss_dssp SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-CS
T ss_pred CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-cC
Confidence 455555666666554 33321 3445555666666666655545554444 35556666666555 333321 14
Q ss_pred cCCcccccCCc
Q 045886 76 SFNASVYAGNL 86 (184)
Q Consensus 76 ~l~~~~~~~N~ 86 (184)
++..+++++|.
T Consensus 273 ~L~~L~Ls~N~ 283 (310)
T 4glp_A 273 KLRVLDLSSNR 283 (310)
T ss_dssp CCSCEECCSCC
T ss_pred CCCEEECCCCc
Confidence 45555555553
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=5.4e-11 Score=103.25 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=46.4
Q ss_pred CCcCCceeeeccCCCCCC-----------------CCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 2 DLVGLIAVNLSRNNLTGP-----------------ITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~-----------------~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
++++|++|+|++|+++|. +|..++ ++++|++|++++|.+.|.+|..++.+++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 456667777777777754 666666 6777777777777776677766666777777777776
Q ss_pred C-CCC-CCCC
Q 045886 63 N-SSG-KIPL 70 (184)
Q Consensus 63 ~-l~g-~~p~ 70 (184)
+ ++| .+|.
T Consensus 284 ~~l~~~~lp~ 293 (636)
T 4eco_A 284 RGISGEQLKD 293 (636)
T ss_dssp TTSCHHHHHH
T ss_pred CCCccccchH
Confidence 6 665 4443
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=2.4e-10 Score=84.88 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=72.1
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCc-CCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNL-FSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~ 80 (184)
.+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++. +....+.++..+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEE
Confidence 57899999999999998888899999999999999998 55 777 689999999999999999874 455677888889
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|+.
T Consensus 187 ~l~~N~i 193 (197)
T 4ezg_A 187 YAFSQTI 193 (197)
T ss_dssp EECBC--
T ss_pred EeeCccc
Confidence 9988863
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.05 E-value=5.8e-10 Score=87.13 Aligned_cols=85 Identities=24% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCcCCceeeeccCC-CCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886 2 DLVGLIAVNLSRNN-LTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~ 79 (184)
++++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+.. ..+.++..
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 45677777777776 66444666777777777777777777666667777777777777777777655543 45566666
Q ss_pred ccccCCc
Q 045886 80 SVYAGNL 86 (184)
Q Consensus 80 ~~~~~N~ 86 (184)
+++.+|.
T Consensus 158 L~l~~n~ 164 (285)
T 1ozn_A 158 LFLHGNR 164 (285)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 6666654
No 65
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=4.8e-10 Score=82.02 Aligned_cols=69 Identities=26% Similarity=0.223 Sum_probs=59.2
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL 70 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~ 70 (184)
+++.|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|.+....+.
T Consensus 55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 578999999999999965555578999999999999999955555699999999999999999866543
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.05 E-value=4.3e-10 Score=96.35 Aligned_cols=85 Identities=22% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+++.|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|+.+++|++|++++|++++..|.. ..+.+++.+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 3455666666666666444555666666666666666666555555666666666666666665544332 344455555
Q ss_pred cccCCc
Q 045886 81 VYAGNL 86 (184)
Q Consensus 81 ~~~~N~ 86 (184)
++.+|.
T Consensus 134 ~L~~n~ 139 (606)
T 3vq2_A 134 NVAHNF 139 (606)
T ss_dssp ECCSSC
T ss_pred eCCCCc
Confidence 555543
No 67
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=1.9e-10 Score=83.95 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=41.8
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCC-CCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELT-SLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+.+|+.|++++|+++ .+|. +..+. +|+.|++++|.+++ + ..+..+++|+.|++++|++++..|.. ..+.++..+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 445556666666665 3433 33332 56666666666553 2 34555556666666666655444333 344555555
Q ss_pred cccCCc
Q 045886 81 VYAGNL 86 (184)
Q Consensus 81 ~~~~N~ 86 (184)
++++|.
T Consensus 94 ~L~~N~ 99 (176)
T 1a9n_A 94 ILTNNS 99 (176)
T ss_dssp ECCSCC
T ss_pred ECCCCc
Confidence 555553
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.04 E-value=2.9e-10 Score=90.24 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=38.0
Q ss_pred CcCCceeeeccCCCCC--CCCc-ccCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCCCCCCCccccccCC
Q 045886 3 LVGLIAVNLSRNNLTG--PITP-KIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFN 78 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g--~~p~-~~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~ 78 (184)
+++|++|+|++|++++ .++. .+..+++|+.|++++|++++..| ..+..+++|+.|++++|+++ .+|.... .++.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCce
Confidence 4455555555555551 1111 12344555555555555554443 23344455555555555555 3333211 3444
Q ss_pred cccccCCc
Q 045886 79 ASVYAGNL 86 (184)
Q Consensus 79 ~~~~~~N~ 86 (184)
.+++++|.
T Consensus 278 ~L~Ls~N~ 285 (312)
T 1wwl_A 278 VLDLSYNR 285 (312)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 44444443
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.03 E-value=5.4e-10 Score=86.88 Aligned_cols=61 Identities=25% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
.|++|+|++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++.
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence 3444444444443222223334444444444444443333333333333333333333333
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.02 E-value=9.6e-10 Score=94.62 Aligned_cols=85 Identities=16% Similarity=0.037 Sum_probs=46.5
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+++.|+.|+|++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|++++|.+++.+|.. ..+.++..+
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 3455566666666666544455566666666666666666322233455666666666666666555532 344455555
Q ss_pred cccCCc
Q 045886 81 VYAGNL 86 (184)
Q Consensus 81 ~~~~N~ 86 (184)
++.+|.
T Consensus 177 ~L~~N~ 182 (597)
T 3oja_B 177 QLSSNR 182 (597)
T ss_dssp ECTTSC
T ss_pred ECcCCC
Confidence 555543
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=8.2e-10 Score=88.01 Aligned_cols=85 Identities=21% Similarity=0.087 Sum_probs=68.1
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++..+.....+.++..+++.
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 57888999999998777788888999999999999998766678888889999999999888443334566778888888
Q ss_pred CCcCC
Q 045886 84 GNLEL 88 (184)
Q Consensus 84 ~N~~l 88 (184)
+|+.-
T Consensus 272 ~N~i~ 276 (330)
T 1xku_A 272 NNNIS 276 (330)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 87643
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.01 E-value=8.3e-10 Score=88.12 Aligned_cols=86 Identities=21% Similarity=0.062 Sum_probs=68.2
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++..++....+.++..+++.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 47888899999988777778888889999999999998776678888889999999999888433334667778888888
Q ss_pred CCcCCC
Q 045886 84 GNLELC 89 (184)
Q Consensus 84 ~N~~lc 89 (184)
+|+...
T Consensus 273 ~N~l~~ 278 (332)
T 2ft3_A 273 TNNITK 278 (332)
T ss_dssp SSCCCB
T ss_pred CCCCCc
Confidence 876543
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.01 E-value=1.9e-10 Score=83.94 Aligned_cols=84 Identities=18% Similarity=0.001 Sum_probs=68.3
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC--CccccccCCccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP--LGTQLQSFNASV 81 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p--~~~~l~~l~~~~ 81 (184)
++|+.|+|++|.+++. +.+..+++|+.|++++|.+++..|..+..+++|++|++++|+++...+ ....+.++..++
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 3899999999999954 678999999999999999995433445899999999999999965333 235677888889
Q ss_pred ccCCcCCC
Q 045886 82 YAGNLELC 89 (184)
Q Consensus 82 ~~~N~~lc 89 (184)
+.+|+...
T Consensus 120 l~~N~i~~ 127 (176)
T 1a9n_A 120 ILRNPVTN 127 (176)
T ss_dssp CCSSGGGG
T ss_pred ecCCCCCC
Confidence 99998643
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.00 E-value=1.1e-09 Score=85.08 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=51.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC-CCCc-cccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK-IPLG-TQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~-~p~~-~~l~~l~~ 79 (184)
++++|++|+|++|.+++..|..+.++++|+.|++++|.+++..+..+..+++|++|++++|++++. +|.. ..+.++..
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 356677777777777655555666666677777777666654444566666666666666666652 3432 34455555
Q ss_pred ccccCCc
Q 045886 80 SVYAGNL 86 (184)
Q Consensus 80 ~~~~~N~ 86 (184)
+++++|.
T Consensus 154 L~Ls~N~ 160 (276)
T 2z62_A 154 LDLSSNK 160 (276)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 5555553
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=2.2e-10 Score=96.54 Aligned_cols=86 Identities=21% Similarity=0.098 Sum_probs=58.8
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
+++|+.|+|++|.+++. |. ...+++|+.|++++|.+++ +|+.+..+++|+.|++++|.+++.++....+..+..+++
T Consensus 168 l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 45566666666666533 22 2346777777777777774 455577788888888888888865444456677788888
Q ss_pred cCCcCCCCC
Q 045886 83 AGNLELCGL 91 (184)
Q Consensus 83 ~~N~~lc~~ 91 (184)
.+|+..|++
T Consensus 245 ~~N~l~c~~ 253 (487)
T 3oja_A 245 RGNGFHCGT 253 (487)
T ss_dssp TTCCBCHHH
T ss_pred CCCCCcCcc
Confidence 888888754
No 76
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.00 E-value=4.7e-10 Score=88.40 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCC-CCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG-SIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~ 79 (184)
++++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|+.|++++|++++..|.. ..+.++..
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 45667777777777776666667777777777777777764 35666677777777777777776665543 44555666
Q ss_pred ccccCCcC
Q 045886 80 SVYAGNLE 87 (184)
Q Consensus 80 ~~~~~N~~ 87 (184)
+++.+|..
T Consensus 204 L~L~~N~l 211 (306)
T 2z66_A 204 LNMSHNNF 211 (306)
T ss_dssp EECTTSCC
T ss_pred EECCCCcc
Confidence 66666543
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.99 E-value=6.1e-10 Score=94.27 Aligned_cols=85 Identities=24% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC-CC-CccccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK-IP-LGTQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~-~p-~~~~l~~l~~ 79 (184)
++++|++|+|++|++++..|..|..+++|++|++++|.+++..|..++.+++|++|++++|++++. .| ....+.++..
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 355566666666666655555566666666666666666655445566666666666666666542 22 2244445555
Q ss_pred ccccCCc
Q 045886 80 SVYAGNL 86 (184)
Q Consensus 80 ~~~~~N~ 86 (184)
+++.+|.
T Consensus 128 L~L~~n~ 134 (549)
T 2z81_A 128 LRIGNVE 134 (549)
T ss_dssp EEEEESS
T ss_pred EECCCCc
Confidence 5555543
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.99 E-value=1.7e-09 Score=88.11 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=40.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccc-ccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS-LSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~-~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+++|++|+|++|.+++..|..++.+++|++|++++|.++ .+|.. |..+++|++|++++|++++..|.. ..+.++..+
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 444555555555555444444555555555555555555 33332 345555555555555555444432 334444444
Q ss_pred cccCC
Q 045886 81 VYAGN 85 (184)
Q Consensus 81 ~~~~N 85 (184)
++.+|
T Consensus 171 ~l~~n 175 (390)
T 3o6n_A 171 QLSSN 175 (390)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 44444
No 79
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.98 E-value=5.7e-10 Score=95.60 Aligned_cols=64 Identities=22% Similarity=0.128 Sum_probs=29.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+++|++|+|++|++++..|..|.++++|++|++++|++++..|..++.+++|++|++++|++++
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 3444444444444444444444444444444444444444444444444444444444444443
No 80
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.98 E-value=8.8e-10 Score=91.97 Aligned_cols=67 Identities=22% Similarity=0.158 Sum_probs=35.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p 69 (184)
++.|++|+|++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|++.+..|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 4455555555555554445555555555555555555553222334555555555555555554443
No 81
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1.8e-10 Score=103.39 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=41.8
Q ss_pred CCcCCceeeeccCCCCC-----------------CCCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 2 DLVGLIAVNLSRNNLTG-----------------PITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g-----------------~~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
++++|+.|+|++|+++| .+|..++ ++++|+.|+|++|.+.|.+|..+.++++|+.|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 45566666666666665 2666655 6666666666666666666666666666666666666
Q ss_pred C-CCC
Q 045886 63 N-SSG 66 (184)
Q Consensus 63 ~-l~g 66 (184)
+ ++|
T Consensus 526 ~~lsg 530 (876)
T 4ecn_A 526 RGISA 530 (876)
T ss_dssp TTSCH
T ss_pred CCccc
Confidence 5 555
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.97 E-value=8.8e-10 Score=88.68 Aligned_cols=84 Identities=27% Similarity=0.206 Sum_probs=49.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC--CccccccCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP--LGTQLQSFNA 79 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p--~~~~l~~l~~ 79 (184)
++++|+.|+|++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+ ....+.++..
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 35566666666666665555556666666666666666663333336666666666666666664333 1234555555
Q ss_pred ccccCC
Q 045886 80 SVYAGN 85 (184)
Q Consensus 80 ~~~~~N 85 (184)
+++.+|
T Consensus 154 L~l~~n 159 (353)
T 2z80_A 154 LRVGNM 159 (353)
T ss_dssp EEEEES
T ss_pred EECCCC
Confidence 555555
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=9.6e-10 Score=94.43 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=71.8
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccccC
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAG 84 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~~ 84 (184)
.|+.|+|++|.+++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|+.|++++|++++ +|....+.+|..+++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCC
Confidence 58899999999994 786 999999999999999999 899999999999999999999998 56667788899999988
Q ss_pred CcC
Q 045886 85 NLE 87 (184)
Q Consensus 85 N~~ 87 (184)
|..
T Consensus 518 N~l 520 (567)
T 1dce_A 518 NRL 520 (567)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 84
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.97 E-value=1e-09 Score=91.22 Aligned_cols=64 Identities=27% Similarity=0.221 Sum_probs=32.2
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|+++.
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 4445555555555554444445555555555555555553333334555555555555555543
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.97 E-value=1.2e-09 Score=94.02 Aligned_cols=87 Identities=15% Similarity=-0.000 Sum_probs=76.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+++.|+.|+|++|.+++..|..|+.+++|+.|++++|.+++..|..|+.+++|++|++++|.+++.++.. ..+.++..+
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 3678999999999999877789999999999999999999887888899999999999999999777665 677888888
Q ss_pred cccCCcCC
Q 045886 81 VYAGNLEL 88 (184)
Q Consensus 81 ~~~~N~~l 88 (184)
++.+|...
T Consensus 153 ~Ls~N~l~ 160 (597)
T 3oja_B 153 SMSNNNLE 160 (597)
T ss_dssp ECCSSCCC
T ss_pred EeeCCcCC
Confidence 88888643
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.97 E-value=9.9e-10 Score=98.11 Aligned_cols=85 Identities=21% Similarity=0.128 Sum_probs=52.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccc--ccCCCCCCeeeccCCCCCCCCCC--ccccccC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS--LSQLSGLGVLDLSYNNSSGKIPL--GTQLQSF 77 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~--~~~l~~L~~l~ls~N~l~g~~p~--~~~l~~l 77 (184)
++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|.. +..+++|++||+++|.+++..|. ...+.+|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 4556666666666666556666666666666666666666555544 66666666666666666655442 2445555
Q ss_pred CcccccCCc
Q 045886 78 NASVYAGNL 86 (184)
Q Consensus 78 ~~~~~~~N~ 86 (184)
..+++.+|.
T Consensus 151 ~~L~Ls~N~ 159 (844)
T 3j0a_A 151 KSIDFSSNQ 159 (844)
T ss_dssp CEEEEESSC
T ss_pred CEEECCCCc
Confidence 555555554
No 87
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=1.2e-09 Score=96.39 Aligned_cols=83 Identities=27% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+..+++|+.|+|++|+|+ .+|.. ..+.+|..+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 4678999999999999 89988889999999999999999 99999999999999999999999 55654 678889999
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|..
T Consensus 299 ~L~~N~l 305 (727)
T 4b8c_D 299 YFFDNMV 305 (727)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 9988854
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.96 E-value=5.6e-10 Score=88.74 Aligned_cols=84 Identities=21% Similarity=0.143 Sum_probs=41.4
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
++|++|+|++|.+++ +|. ...+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+....+.++..+++.
T Consensus 169 ~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 169 DTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred CcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence 444455555555442 222 223555555555555555 33444555555555555555555432222344455555555
Q ss_pred CCcCCCC
Q 045886 84 GNLELCG 90 (184)
Q Consensus 84 ~N~~lc~ 90 (184)
+|+..|+
T Consensus 246 ~N~~~~~ 252 (317)
T 3o53_A 246 GNGFHCG 252 (317)
T ss_dssp TCCCBHH
T ss_pred CCCccCc
Confidence 5555543
No 89
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.8e-09 Score=96.94 Aligned_cols=84 Identities=25% Similarity=0.258 Sum_probs=72.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccC------CCCCCCCCCc-c
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY------NNSSGKIPLG-T 72 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~------N~l~g~~p~~-~ 72 (184)
+|++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++ |++.+.+|.. .
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 3458999999999999 8898887 89999999999999996 898899999999999976 7788888865 6
Q ss_pred ccccCCcccccCCcC
Q 045886 73 QLQSFNASVYAGNLE 87 (184)
Q Consensus 73 ~l~~l~~~~~~~N~~ 87 (184)
.+.+|..+++.+|..
T Consensus 804 ~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI 818 (876)
T ss_dssp GCSSCCEEECCSSCC
T ss_pred cCCCCCEEECCCCCC
Confidence 678888888888876
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.96 E-value=1.7e-09 Score=86.32 Aligned_cols=64 Identities=27% Similarity=0.281 Sum_probs=32.0
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK 67 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~ 67 (184)
+++|+.|+|++|++++..|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 344555555555555443444555555555555555555 4454455555555555555555433
No 91
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.95 E-value=2e-09 Score=87.64 Aligned_cols=86 Identities=15% Similarity=0.011 Sum_probs=74.2
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
+++.|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|+++...+.. ..+.++..+
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 3678999999999999766678999999999999999999877788999999999999999999666554 567888888
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|..
T Consensus 147 ~L~~n~l 153 (390)
T 3o6n_A 147 SMSNNNL 153 (390)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 8888764
No 92
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.95 E-value=1.5e-09 Score=86.53 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=63.4
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
++++|+.|++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+.. ..+.++..+
T Consensus 169 ~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 169 GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp GCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 3677888888888888 5666554 77888888888888766778888888888888888888766643 556677777
Q ss_pred cccCCcCC
Q 045886 81 VYAGNLEL 88 (184)
Q Consensus 81 ~~~~N~~l 88 (184)
++.+|...
T Consensus 246 ~L~~N~l~ 253 (330)
T 1xku_A 246 HLNNNKLV 253 (330)
T ss_dssp ECCSSCCS
T ss_pred ECCCCcCc
Confidence 77777544
No 93
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=89.67 Aligned_cols=67 Identities=25% Similarity=0.176 Sum_probs=38.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~ 68 (184)
++++|+.|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++...
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 152 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC
Confidence 3455666666666666444455666666666666666666333345566666666666666665433
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=92.46 Aligned_cols=86 Identities=26% Similarity=0.288 Sum_probs=70.3
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCC--CCcccccCCCCCCeeeccCCCCCCCCCCc--cccccC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG--SIPSSLSQLSGLGVLDLSYNNSSGKIPLG--TQLQSF 77 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g--~~P~~~~~l~~L~~l~ls~N~l~g~~p~~--~~l~~l 77 (184)
.+++|++|++++|++++.+|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|.. ..+..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 46789999999999998899999999999999999999996 56677889999999999999999866643 445566
Q ss_pred CcccccCCcC
Q 045886 78 NASVYAGNLE 87 (184)
Q Consensus 78 ~~~~~~~N~~ 87 (184)
..+++++|..
T Consensus 402 ~~L~Ls~N~l 411 (520)
T 2z7x_B 402 LSLNMSSNIL 411 (520)
T ss_dssp CEEECCSSCC
T ss_pred CEEECcCCCC
Confidence 6666666643
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.93 E-value=1.4e-09 Score=92.70 Aligned_cols=81 Identities=25% Similarity=0.158 Sum_probs=52.0
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
++|+.|+|++|.+++..|..|.++++|++|++++|++++..|..|..+++|++||+++|+++ .+|.. .+.++..++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECC
Confidence 45667777777777555556777777777777777777555666666777777777777666 33433 45555556555
Q ss_pred CCc
Q 045886 84 GNL 86 (184)
Q Consensus 84 ~N~ 86 (184)
+|.
T Consensus 130 ~N~ 132 (562)
T 3a79_B 130 FND 132 (562)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.92 E-value=8.3e-10 Score=84.13 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=41.7
Q ss_pred CcCCceeeeccCC-CCCCCCcccCCCCCCCEeeccC-CcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCC--
Q 045886 3 LVGLIAVNLSRNN-LTGPITPKIGELTSLDFLDLSR-NLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFN-- 78 (184)
Q Consensus 3 l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~-- 78 (184)
+++|+.|++++|. +++..+..|.++++|++|++++ |.+++..+..|..+++|++|++++|++++ +|....+.++.
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L 132 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIF 132 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSE
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccc
Confidence 4555555555554 5533333455555555555555 55553333455555555555555555554 33333333343
Q ss_pred -cccccCC
Q 045886 79 -ASVYAGN 85 (184)
Q Consensus 79 -~~~~~~N 85 (184)
.+++.+|
T Consensus 133 ~~L~l~~N 140 (239)
T 2xwt_C 133 FILEITDN 140 (239)
T ss_dssp EEEEEESC
T ss_pred cEEECCCC
Confidence 4445554
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.90 E-value=3.9e-09 Score=91.64 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=27.1
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+.|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc
Confidence 344444444444444444444444444444444444442211234444444444444444443
No 98
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=2.2e-09 Score=86.08 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=70.9
Q ss_pred ceeeeccC-CCCCCCCcccCCCCCCCEeeccC-CcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccccc
Q 045886 7 IAVNLSRN-NLTGPITPKIGELTSLDFLDLSR-NLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYA 83 (184)
Q Consensus 7 ~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~ 83 (184)
..++++++ +|+ .+|. ++.+++|+.|+|++ |.|++..|..|..+++|+.|+|++|+|++.+|.. ..+.+|..++++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35799998 899 6898 99999999999996 9999777788999999999999999999988876 678889999999
Q ss_pred CCcCC
Q 045886 84 GNLEL 88 (184)
Q Consensus 84 ~N~~l 88 (184)
+|...
T Consensus 89 ~N~l~ 93 (347)
T 2ifg_A 89 FNALE 93 (347)
T ss_dssp SSCCS
T ss_pred CCccc
Confidence 88643
No 99
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=87.56 Aligned_cols=85 Identities=27% Similarity=0.199 Sum_probs=73.4
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~ 82 (184)
+.|++|++++|++++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++++..+. ...+.++..+++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 4789999999999965555899999999999999999977788899999999999999999976654 356788888888
Q ss_pred cCCcCC
Q 045886 83 AGNLEL 88 (184)
Q Consensus 83 ~~N~~l 88 (184)
.+|...
T Consensus 132 ~~n~l~ 137 (353)
T 2z80_A 132 LGNPYK 137 (353)
T ss_dssp TTCCCS
T ss_pred CCCCCc
Confidence 888654
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.90 E-value=1.9e-09 Score=86.22 Aligned_cols=84 Identities=24% Similarity=0.255 Sum_probs=60.3
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~ 80 (184)
.+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++..|.. ..+.++..+
T Consensus 241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 46778888888888874 3 357778888888888888874 43 4777788888888888877666543 456677777
Q ss_pred cccCCcCCC
Q 045886 81 VYAGNLELC 89 (184)
Q Consensus 81 ~~~~N~~lc 89 (184)
++.+|+...
T Consensus 317 ~L~~n~l~~ 325 (347)
T 4fmz_A 317 FLSQNHITD 325 (347)
T ss_dssp ECCSSSCCC
T ss_pred EccCCcccc
Confidence 777776544
No 101
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.88 E-value=3.2e-09 Score=90.02 Aligned_cols=83 Identities=22% Similarity=0.132 Sum_probs=38.0
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~ 81 (184)
+++|++|+|++|++++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..+. ...+.++..++
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 44455555555555533334445555555555555555433334444444455555544444433321 13333444444
Q ss_pred ccCC
Q 045886 82 YAGN 85 (184)
Q Consensus 82 ~~~N 85 (184)
+.+|
T Consensus 131 L~~n 134 (570)
T 2z63_A 131 VAHN 134 (570)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 4443
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.87 E-value=1.2e-09 Score=92.02 Aligned_cols=65 Identities=23% Similarity=0.177 Sum_probs=37.1
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccccc-CCCCCCeeeccCCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS-QLSGLGVLDLSYNNSSGK 67 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~l~ls~N~l~g~ 67 (184)
+++|+.|+|++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 34556666666666655555566666666666666666655555554 445555555555554433
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.87 E-value=3.3e-09 Score=83.98 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=58.8
Q ss_pred cCCceeeeccCCCCCCCCccc--CCCCCCCEeeccCCcCCCCCc----ccccCCCCCCeeeccCCCCCCCCCCc-ccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKI--GELTSLDFLDLSRNLFSGSIP----SSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQS 76 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~ls~N~l~g~~P----~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~ 76 (184)
++|++|++++|.+++..|..+ ..+++|+.|++++|.+++..| ..+..+++|++|++++|++.+.+|.. ..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457788888888887777776 777778888888887776555 23445777777777777777666544 45666
Q ss_pred CCcccccCCc
Q 045886 77 FNASVYAGNL 86 (184)
Q Consensus 77 l~~~~~~~N~ 86 (184)
+..+++++|.
T Consensus 171 L~~L~Ls~N~ 180 (310)
T 4glp_A 171 LTSLDLSDNP 180 (310)
T ss_dssp CCEEECCSCT
T ss_pred CCEEECCCCC
Confidence 7777777765
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=1.1e-08 Score=80.45 Aligned_cols=60 Identities=28% Similarity=0.330 Sum_probs=27.3
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+++|+.|+|++|.+++ +| .+..+++|++|++++|++++ + +.+..+++|+.|++++|++++
T Consensus 89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc
Confidence 4445555555555542 22 24444455555555554442 2 234444444444444444443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=1.4e-08 Score=78.86 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=33.5
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
++.|+.|++++|.++ .+| .+..+++|+.|++++|++++ +|. +..+++|+.|++++|++++
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC
Confidence 345556666666655 444 45555566666666666652 333 5555556666666555554
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.80 E-value=3.2e-09 Score=80.87 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=70.6
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCc-CCCCCcccccCCCCCCeeeccC-CCCCCCCCCc-cccccCCcc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNL-FSGSIPSSLSQLSGLGVLDLSY-NNSSGKIPLG-TQLQSFNAS 80 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l~~L~~l~ls~-N~l~g~~p~~-~~l~~l~~~ 80 (184)
..|+.|++++|++++..+..|.++++|+.|++++|+ +++..+..|..+++|++|++++ |++++..+.. ..+.++..+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 368999999999996666689999999999999997 8855556899999999999998 9999776654 567788888
Q ss_pred cccCCcC
Q 045886 81 VYAGNLE 87 (184)
Q Consensus 81 ~~~~N~~ 87 (184)
++.+|..
T Consensus 111 ~l~~n~l 117 (239)
T 2xwt_C 111 GIFNTGL 117 (239)
T ss_dssp EEEEECC
T ss_pred eCCCCCC
Confidence 8888754
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.80 E-value=1.6e-08 Score=80.17 Aligned_cols=60 Identities=32% Similarity=0.457 Sum_probs=27.8
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+++|++|+|++|.+++ +| .+..+++|++|++++|.+++ +|. +..+++|+.|++++|++++
T Consensus 84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN 143 (308)
T ss_dssp CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc
Confidence 4445555555555542 22 34444555555555555442 222 4444444444444444443
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.79 E-value=1.4e-08 Score=80.53 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=25.9
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
+++|+.|++++|++++ +|. +..+++|++|++++|.+++ +|. +..+++|+.|++++|+++
T Consensus 106 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC
Confidence 3444555555555442 222 4444444444444444442 222 444444444444444444
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=7.9e-09 Score=89.40 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=39.0
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
|++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. |....+.+|..+++
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 204 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEC
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEc
Confidence 34444555555555422 334455555555555555553332 45555555555555555542 33344455555555
Q ss_pred cCCc
Q 045886 83 AGNL 86 (184)
Q Consensus 83 ~~N~ 86 (184)
.+|+
T Consensus 205 ~~N~ 208 (605)
T 1m9s_A 205 FSQE 208 (605)
T ss_dssp CSEE
T ss_pred cCCc
Confidence 5554
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=1.3e-08 Score=78.94 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=46.1
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc--------------------cccCCCCCCeeeccCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS--------------------SLSQLSGLGVLDLSYN 62 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~--------------------~~~~l~~L~~l~ls~N 62 (184)
+++|+.|+|++|++++ +|+ +..+++|+.|++++|++++ +|. .+..+++|+.|++++|
T Consensus 62 l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138 (263)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTS
T ss_pred CCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEECCCC
Confidence 4566666666666663 333 6666666666666666653 332 3555566666666666
Q ss_pred CCCCCCCCccccccCCcccccCCcC
Q 045886 63 NSSGKIPLGTQLQSFNASVYAGNLE 87 (184)
Q Consensus 63 ~l~g~~p~~~~l~~l~~~~~~~N~~ 87 (184)
++++. |....+.++..+++.+|..
T Consensus 139 ~i~~~-~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 139 KLKSI-VMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CCCBC-GGGGGCTTCCEEECTTSCC
T ss_pred cCCCC-hHHccCCCCCEEECCCCcC
Confidence 66543 3334455555666666543
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.78 E-value=1.3e-08 Score=80.00 Aligned_cols=80 Identities=28% Similarity=0.304 Sum_probs=59.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
.+++|+.|+|++|++++ +++ +..+++|+.|++++|.+++ +|. +..+++|++|++++|++++. +....+..+..++
T Consensus 66 ~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLY 140 (291)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEE
T ss_pred cCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEE
Confidence 46778888888888884 444 8888888888888888884 444 88888888888888888764 4445556666666
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+++|.
T Consensus 141 l~~n~ 145 (291)
T 1h6t_A 141 LGNNK 145 (291)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 66654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.75 E-value=2.2e-08 Score=86.55 Aligned_cols=80 Identities=29% Similarity=0.359 Sum_probs=52.2
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
.+++|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++ + ..+..+++|+.|++++|++++..| ...+.+|..++
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence 35566666666666663 3 336666677777777777764 3 456777777777777777776665 55566677777
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+++|.
T Consensus 182 Ls~N~ 186 (605)
T 1m9s_A 182 LSKNH 186 (605)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 77764
No 113
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.74 E-value=6.3e-09 Score=82.63 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=48.6
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccccc-CCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS-QLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++. |....+.++..++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEE
Confidence 44566666666666655555666667777777777777655555443 456666666666666544 2222344555555
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+++|.
T Consensus 198 Ls~N~ 202 (317)
T 3o53_A 198 LSSNK 202 (317)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55543
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.70 E-value=1.8e-08 Score=84.05 Aligned_cols=79 Identities=24% Similarity=0.185 Sum_probs=35.4
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
++|+.|+|++|++++..| +..+++|+.|++++|.+++. +.+..+++|+.|++++|++++.+| ...+..+..+++.
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLN 383 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEecc
Confidence 334444444444443222 33444444444444444422 234445555555555555554444 3344444445555
Q ss_pred CCcC
Q 045886 84 GNLE 87 (184)
Q Consensus 84 ~N~~ 87 (184)
+|++
T Consensus 384 ~n~~ 387 (466)
T 1o6v_A 384 DQAW 387 (466)
T ss_dssp CEEE
T ss_pred CCcc
Confidence 5543
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=2.3e-10 Score=85.01 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=47.8
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
++.|++|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +|....+..+..+++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEEC
Confidence 4556666666666663 55 5666666666666666666 566655555666666666666665 233334455555555
Q ss_pred cCCc
Q 045886 83 AGNL 86 (184)
Q Consensus 83 ~~N~ 86 (184)
.+|.
T Consensus 123 ~~N~ 126 (198)
T 1ds9_A 123 SNNK 126 (198)
T ss_dssp SEEE
T ss_pred CCCc
Confidence 5554
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.67 E-value=6.9e-08 Score=77.07 Aligned_cols=80 Identities=29% Similarity=0.344 Sum_probs=52.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
.+++|++|++++|+++ .+|. +..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ ...+..+..++
T Consensus 64 ~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 3566777777777777 4444 777777777777777777 344 46777777777777777765433 44455555566
Q ss_pred ccCCc
Q 045886 82 YAGNL 86 (184)
Q Consensus 82 ~~~N~ 86 (184)
+.+|.
T Consensus 139 l~~n~ 143 (347)
T 4fmz_A 139 LGANH 143 (347)
T ss_dssp CTTCT
T ss_pred CCCCC
Confidence 65553
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.65 E-value=5.8e-08 Score=80.93 Aligned_cols=78 Identities=29% Similarity=0.455 Sum_probs=36.4
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY 82 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~ 82 (184)
+++|+.|++++|.+++ +|+ +..+++|+.|++++|++++. +. +..+++|+.|++++|++++..| ...+..+..+++
T Consensus 264 l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 3445555555555542 222 44555555555555555532 22 4455555555555555554443 223334444444
Q ss_pred cCC
Q 045886 83 AGN 85 (184)
Q Consensus 83 ~~N 85 (184)
.+|
T Consensus 339 ~~n 341 (466)
T 1o6v_A 339 YNN 341 (466)
T ss_dssp CSS
T ss_pred CCC
Confidence 444
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.64 E-value=7.9e-08 Score=82.61 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=28.7
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+++|+.|+|++|+|++ +|. +.. +|+.|++++|.|++ +|. .+++|+.|++++|++++
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence 3455555555555553 444 333 55555555555553 444 34455555555555554
No 119
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=1.6e-08 Score=79.00 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=47.5
Q ss_pred CCcCCceeeeccCCCCC--CCCcccCCCCCCCEeeccCCcCCCCCcccccCCC--CCCeeeccCCCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLS--GLGVLDLSYNNSSGKIPL 70 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~--~L~~l~ls~N~l~g~~p~ 70 (184)
+++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|++++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 35678888888888886 4445566788888888888888843 2334444 788888888888776664
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.62 E-value=7.1e-08 Score=80.59 Aligned_cols=62 Identities=27% Similarity=0.247 Sum_probs=42.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p 69 (184)
.++.|+.|++++|++++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|++++..+
T Consensus 189 ~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 456677777777777743 36677777777777777775 55 6667777777777777776543
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.60 E-value=6e-08 Score=83.34 Aligned_cols=76 Identities=21% Similarity=0.172 Sum_probs=36.2
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCC-------CeeeccCCCCCCCCCCcccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGL-------GVLDLSYNNSSGKIPLGTQLQS 76 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L-------~~l~ls~N~l~g~~p~~~~l~~ 76 (184)
++|+.|+|++|.+++ +|. +. ++|+.|++++|.|+ .+|. +.. +| +.|++++|+++..++....+.+
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDP 231 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCC
Confidence 344555555555553 444 33 45555555555555 4444 332 44 5555555555532222234555
Q ss_pred CCcccccCCcC
Q 045886 77 FNASVYAGNLE 87 (184)
Q Consensus 77 l~~~~~~~N~~ 87 (184)
+..+++.+|+.
T Consensus 232 L~~L~L~~N~l 242 (571)
T 3cvr_A 232 TCTIILEDNPL 242 (571)
T ss_dssp TEEEECCSSSC
T ss_pred CCEEEeeCCcC
Confidence 55555666654
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.59 E-value=1.7e-07 Score=78.27 Aligned_cols=78 Identities=23% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV 81 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~ 81 (184)
.+++|+.|++++|++++ +| ++.+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| ...+..+..++
T Consensus 168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~ 239 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFD 239 (457)
T ss_dssp TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEE
T ss_pred cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEE
Confidence 45677888888888884 55 77788888888888888853 37788888999999999888 45 45566777777
Q ss_pred ccCCcC
Q 045886 82 YAGNLE 87 (184)
Q Consensus 82 ~~~N~~ 87 (184)
+.+|..
T Consensus 240 l~~N~l 245 (457)
T 3bz5_A 240 CSVNPL 245 (457)
T ss_dssp CCSSCC
T ss_pred eeCCcC
Confidence 777754
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.54 E-value=2.3e-07 Score=77.40 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=39.9
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA 83 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~ 83 (184)
++|++|++++|++++ +| +++++++|++|++++|++++ +|..+ .+|++|++++|++++ +|....+..+..+++.
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence 356666666666663 55 46666666666666666663 44432 345555555555554 3333334444444444
Q ss_pred CC
Q 045886 84 GN 85 (184)
Q Consensus 84 ~N 85 (184)
+|
T Consensus 204 ~N 205 (454)
T 1jl5_A 204 NN 205 (454)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.51 E-value=3e-07 Score=79.78 Aligned_cols=76 Identities=29% Similarity=0.276 Sum_probs=49.5
Q ss_pred cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886 4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY 82 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~ 82 (184)
++|+.|+|++|+++ .+| ..+++|+.|++++|.|+ .+|. .+++|+.|++++|+++ .+|.. ..+.++..+++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 45666666666666 355 34566777777777777 5665 4567777777777777 34433 55666777777
Q ss_pred cCCcCC
Q 045886 83 AGNLEL 88 (184)
Q Consensus 83 ~~N~~l 88 (184)
.+|+..
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 777653
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.49 E-value=8.6e-08 Score=77.11 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=37.2
Q ss_pred cCCceeeeccCCCCCCCCc-ccCCCCCCCEeeccCCcCCCCCcc-cccCCCCCCe-eeccCCCCCCCCC
Q 045886 4 VGLIAVNLSRNNLTGPITP-KIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGV-LDLSYNNSSGKIP 69 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~-l~ls~N~l~g~~p 69 (184)
+++++|+|++|+|+ .+|+ .|.++++|++|+|++|++.+.+|. .|.+++++.. +.+++|+++...|
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 35677777777777 4443 467777777777777776544443 3444444443 3334455544433
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=4.4e-09 Score=78.03 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=69.2
Q ss_pred CcCCceeeeccCCCCCCCCc------ccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccc
Q 045886 3 LVGLIAVNLSRNNLTGPITP------KIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQ 75 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~------~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~ 75 (184)
...++.++++.|.++|.+|. .+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++. +|.. ..+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCC
Confidence 45678889999999988887 89999999999999999995 78 89999999999999999984 5544 4457
Q ss_pred cCCcccccCCcC
Q 045886 76 SFNASVYAGNLE 87 (184)
Q Consensus 76 ~l~~~~~~~N~~ 87 (184)
.+..+++.+|..
T Consensus 94 ~L~~L~L~~N~l 105 (198)
T 1ds9_A 94 TLEELWISYNQI 105 (198)
T ss_dssp HCSEEEEEEEEC
T ss_pred cCCEEECcCCcC
Confidence 788888887753
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.45 E-value=9.8e-09 Score=83.50 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=52.7
Q ss_pred CcCCceeeeccCCCC----CCCCcccCCCCCCCEeeccCCcCCCC----CcccccC--CCCCCeeeccCCCCCC----CC
Q 045886 3 LVGLIAVNLSRNNLT----GPITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQ--LSGLGVLDLSYNNSSG----KI 68 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~--l~~L~~l~ls~N~l~g----~~ 68 (184)
+++|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++. +|..+.. +++|+.|++++|.+++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 456666677666664 45666666666677777777766644 3444432 6667777777777665 24
Q ss_pred CCc--cccccCCcccccCCcCCC
Q 045886 69 PLG--TQLQSFNASVYAGNLELC 89 (184)
Q Consensus 69 p~~--~~l~~l~~~~~~~N~~lc 89 (184)
|.. ..+.++..+++.+|+...
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHhcCCCceEEEccCCcCCc
Confidence 432 234666666777766543
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.41 E-value=1.4e-08 Score=80.77 Aligned_cols=39 Identities=28% Similarity=0.259 Sum_probs=14.4
Q ss_pred cCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 24 IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 24 ~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
+..+++|++|++++|.+++..|..++.+++|++|++++|
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 333333333333333333333333333333333333333
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.41 E-value=2.9e-07 Score=74.00 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=58.6
Q ss_pred CCcCCceeeeccCCCCCCCCc-ccCCCCCCCE-eeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITP-KIGELTSLDF-LDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL 70 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~-L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~ 70 (184)
++++|++|+|++|++.+.+|. .|.+++++.. +.+++|+++...|..|..+++|++|++++|++.+..+.
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence 578999999999999877775 4789998775 67788999976678899999999999999999876553
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.39 E-value=6.1e-08 Score=78.27 Aligned_cols=65 Identities=31% Similarity=0.270 Sum_probs=37.4
Q ss_pred CCceeeeccCCCCCCCC----cccCCCC-CCCEeeccCCcCCCCCcccccCC-----CCCCeeeccCCCCCCCCC
Q 045886 5 GLIAVNLSRNNLTGPIT----PKIGELT-SLDFLDLSRNLFSGSIPSSLSQL-----SGLGVLDLSYNNSSGKIP 69 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p----~~~~~l~-~L~~L~ls~N~l~g~~P~~~~~l-----~~L~~l~ls~N~l~g~~p 69 (184)
+|++|||++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|++++..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 46666666666664443 4455555 56666666666665555555543 566666666666654443
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.38 E-value=2.2e-08 Score=79.59 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=58.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCC-cCCCC-CcccccCCCCCCeeeccCC-CCCCC-CCCc-cccc-
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRN-LFSGS-IPSSLSQLSGLGVLDLSYN-NSSGK-IPLG-TQLQ- 75 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N-~l~g~-~P~~~~~l~~L~~l~ls~N-~l~g~-~p~~-~~l~- 75 (184)
.+++|++|+|++|.+++..|..++.+++|++|++++| .+++. +|..+..+++|++|++++| .+++. ++.. ..+.
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 4677888888888888777777888888888888888 57642 5666777888888888888 77642 2221 3344
Q ss_pred cCCcccccCC
Q 045886 76 SFNASVYAGN 85 (184)
Q Consensus 76 ~l~~~~~~~N 85 (184)
++..+++.+|
T Consensus 196 ~L~~L~l~~~ 205 (336)
T 2ast_B 196 TITQLNLSGY 205 (336)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEEeCCC
Confidence 5555555555
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.37 E-value=2.9e-07 Score=79.84 Aligned_cols=65 Identities=26% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG 71 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~ 71 (184)
.+++|+.|+|++|+|+ .+|. .+++|+.|++++|.|+ .+|..+..+++|+.|++++|++++.+|..
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 4678999999999999 6777 6789999999999999 89999999999999999999999877653
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.34 E-value=1.4e-06 Score=72.72 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=7.8
Q ss_pred ccCCCCCCeeeccCCCCC
Q 045886 48 LSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 48 ~~~l~~L~~l~ls~N~l~ 65 (184)
+..+++|+.|++++|+++
T Consensus 233 ~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CTTCTTCCEEECCSSCCS
T ss_pred cCCCCCCCEEECCCCcCC
Confidence 334444444444444444
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.32 E-value=6e-08 Score=78.82 Aligned_cols=61 Identities=25% Similarity=0.270 Sum_probs=31.9
Q ss_pred cCCceeeeccCCCC-CCCC---cccCCCCCCCEeeccCCcCC--C---CCcccccCCCCCCeeeccCCCC
Q 045886 4 VGLIAVNLSRNNLT-GPIT---PKIGELTSLDFLDLSRNLFS--G---SIPSSLSQLSGLGVLDLSYNNS 64 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~-g~~p---~~~~~l~~L~~L~ls~N~l~--g---~~P~~~~~l~~L~~l~ls~N~l 64 (184)
++|+.|+|++|+++ +.+| ..+..+++|+.|++++|.++ | ..|..+..+++|+.|++++|.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 45566666666655 3333 23445555555666655555 1 2232455555555555555555
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.26 E-value=1.1e-07 Score=76.87 Aligned_cols=82 Identities=26% Similarity=0.295 Sum_probs=52.4
Q ss_pred CCceeeeccCCCCCCCCcccCCC-----CCCCEeeccCCcCCCCCcccccC----C-CCCCeeeccCCCCCCCCCCc---
Q 045886 5 GLIAVNLSRNNLTGPITPKIGEL-----TSLDFLDLSRNLFSGSIPSSLSQ----L-SGLGVLDLSYNNSSGKIPLG--- 71 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~L~ls~N~l~g~~P~~~~~----l-~~L~~l~ls~N~l~g~~p~~--- 71 (184)
+|++|+|++|.+++..+..+..+ ++|++|++++|.+++..+..+.. + ++|+.|++++|++++..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67788888888776666666554 77788888888877665554433 3 67777777777776554422
Q ss_pred --cc-cccCCcccccCCc
Q 045886 72 --TQ-LQSFNASVYAGNL 86 (184)
Q Consensus 72 --~~-l~~l~~~~~~~N~ 86 (184)
.. ..++..+++++|.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 132 AFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHTTSCTTCCEEECTTSC
T ss_pred HHHhCCCceeEEEccCCc
Confidence 01 1355556665554
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.1e-07 Score=74.14 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=51.3
Q ss_pred CCCCCCCEeeccCCcCCC--CCcccccCCCCCCeeeccCCCCCCCCCCccccc--cCCcccccCCcCCCC
Q 045886 25 GELTSLDFLDLSRNLFSG--SIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQ--SFNASVYAGNLELCG 90 (184)
Q Consensus 25 ~~l~~L~~L~ls~N~l~g--~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~--~l~~~~~~~N~~lc~ 90 (184)
.+++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. .....+. .|..+.+.+|| +|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS-LCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST-TGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc-Ccc
Confidence 468899999999999997 4567778999999999999999976 2223344 77888899998 453
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.02 E-value=2.7e-07 Score=76.23 Aligned_cols=64 Identities=22% Similarity=0.117 Sum_probs=33.8
Q ss_pred CcCCceeeeccCCCCCCCCcccC-----CCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIG-----ELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~-----~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+++|+.|+|++|.+++..+..+. ..++|+.|++++|.+++. +|..+..+++|+.|++++|.+++
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 45566666666666533222222 124566666666666543 34444555666666666665543
No 138
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.80 E-value=3.5e-05 Score=53.42 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=33.8
Q ss_pred eeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCC
Q 045886 8 AVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNS 64 (184)
Q Consensus 8 ~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l 64 (184)
.++-+++.++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777775 35554322 3577777777777733334556667777766666654
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.73 E-value=2.7e-06 Score=70.13 Aligned_cols=85 Identities=19% Similarity=0.062 Sum_probs=66.4
Q ss_pred CcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCCCcccccC-----CCCCCeeeccCCCCCC----CCC
Q 045886 3 LVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGSIPSSLSQ-----LSGLGVLDLSYNNSSG----KIP 69 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~-----l~~L~~l~ls~N~l~g----~~p 69 (184)
.++|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|++++ .+|
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 36899999999999865 5666778899999999999998655554543 6799999999999985 444
Q ss_pred Cc-cccccCCcccccCCcC
Q 045886 70 LG-TQLQSFNASVYAGNLE 87 (184)
Q Consensus 70 ~~-~~l~~l~~~~~~~N~~ 87 (184)
.. ..++++..+++.+|+.
T Consensus 392 ~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHCCCCCEEECCSSSC
T ss_pred HHHHhCCCccEEECCCCCC
Confidence 43 4567788888888864
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=2.1e-06 Score=69.95 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=45.2
Q ss_pred cCCceeeeccCCCCC----CCCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCCCCCCc----
Q 045886 4 VGLIAVNLSRNNLTG----PITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSGKIPLG---- 71 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g~~p~~---- 71 (184)
..|+.|+|++|.++. .++..+...++|++|+|++|.++.. ++..+...++|+.|++++|.++..-...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 456666666666652 1333334566677777777766531 2344555566777777777665321100
Q ss_pred -cccccCCcccccCCc
Q 045886 72 -TQLQSFNASVYAGNL 86 (184)
Q Consensus 72 -~~l~~l~~~~~~~N~ 86 (184)
....++..+++++|+
T Consensus 235 L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 235 AREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHCSSCCEEECTTSS
T ss_pred HHhCCCCCEEeccCCC
Confidence 123456666666664
No 141
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.63 E-value=0.00015 Score=50.21 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=48.4
Q ss_pred CEeeccCCcCC-CCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccCCcCCCCCCC
Q 045886 31 DFLDLSRNLFS-GSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAGNLELCGLPL 93 (184)
Q Consensus 31 ~~L~ls~N~l~-g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~N~~lc~~~~ 93 (184)
..++.+++.|+ ..+|..+. ++|+.|+|++|+|+...+.. ..+..+..+.+.+||+.|+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 47889999997 46776433 47999999999999766654 5567888899999999998853
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.55 E-value=1.2e-05 Score=68.40 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=25.7
Q ss_pred cCCceeeeccCCCCC-CCCcccCCCCCCCEeeccCCcCCCC-CcccccCCCCCCeeeccCCCCC
Q 045886 4 VGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGS-IPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~-~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
++|+.|+|++|++++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 344444444444442 1222233444444444444444322 2222233444444444444443
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.49 E-value=1.6e-05 Score=64.74 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
.+++|++|+|++|.++.. ++..+...++|+.|+|++|.++.. ++..+...++|+.||+++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 357899999999999732 345567788999999999999842 33445567899999999998863
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=0.00012 Score=57.95 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=59.8
Q ss_pred CcCCceeeeccCCCCCCCCc-ccCCCCCCCEeeccCCcCCCCCcccccCCCCCC-eeeccCCCCCCCCCCc-cccccCCc
Q 045886 3 LVGLIAVNLSRNNLTGPITP-KIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLG-VLDLSYNNSSGKIPLG-TQLQSFNA 79 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~-~l~ls~N~l~g~~p~~-~~l~~l~~ 79 (184)
+++|+.|+|++|+++ .+|. .|.++.+|+.+++++| ++..-+.+|..+.+|+ .+++.+ .++...+.. ..+.+|..
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 678999999999999 6665 5999999999999998 7744456799999999 999988 554333222 34455666
Q ss_pred ccccCC
Q 045886 80 SVYAGN 85 (184)
Q Consensus 80 ~~~~~N 85 (184)
+.+.+|
T Consensus 302 l~l~~n 307 (329)
T 3sb4_A 302 VLATGD 307 (329)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 666554
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.38 E-value=8.9e-06 Score=69.16 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=43.4
Q ss_pred CCcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCC----CCcccccCCCCCCeeeccCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSG----SIPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g----~~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
++++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 356777888888877644 33334567777888888877762 233445567778888888777765
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.32 E-value=9.6e-06 Score=68.91 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=30.5
Q ss_pred CCCCCEeeccCCcCCCCCcccc-cCCCCCCeeeccCCCCCCCCCC--ccccccCCcccccCCc
Q 045886 27 LTSLDFLDLSRNLFSGSIPSSL-SQLSGLGVLDLSYNNSSGKIPL--GTQLQSFNASVYAGNL 86 (184)
Q Consensus 27 l~~L~~L~ls~N~l~g~~P~~~-~~l~~L~~l~ls~N~l~g~~p~--~~~l~~l~~~~~~~N~ 86 (184)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ...+.++..+++.+|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 5556666666666554333333 4456666666666665322211 1234455555555554
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00043 Score=54.77 Aligned_cols=66 Identities=12% Similarity=0.000 Sum_probs=54.2
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCC-EeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLD-FLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p 69 (184)
+|.+|+.|+|++| ++..-+..|.++.+|+ .+++++ .++..-+.+|..+++|+.+++++|++....+
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 5789999999998 7733445599999999 999999 7774455789999999999999998875444
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=9.6e-05 Score=54.04 Aligned_cols=85 Identities=16% Similarity=0.054 Sum_probs=58.1
Q ss_pred CCcCCceeeeccC-CCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCCCC----
Q 045886 2 DLVGLIAVNLSRN-NLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSGKI---- 68 (184)
Q Consensus 2 ~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g~~---- 68 (184)
..+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|++++|.+...-
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4578999999999 88632 344466678899999999998732 3344556688999999999886421
Q ss_pred C-CccccccCCcccc--cCCc
Q 045886 69 P-LGTQLQSFNASVY--AGNL 86 (184)
Q Consensus 69 p-~~~~l~~l~~~~~--~~N~ 86 (184)
. ......++..+++ .+|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHhCCCceEEEecCCCCC
Confidence 1 1123345677777 5554
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.03 E-value=5.7e-05 Score=64.11 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=35.4
Q ss_pred CcCCceeeeccCCCCCCCCcccC-CCCCCCEeeccCC-cCCCC-CcccccCCCCCCeeeccCCCCCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIG-ELTSLDFLDLSRN-LFSGS-IPSSLSQLSGLGVLDLSYNNSSG 66 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N-~l~g~-~P~~~~~l~~L~~l~ls~N~l~g 66 (184)
+++|+.|+|++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 44566666666666655444443 4566666666666 33321 33333356666666666666544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.02 E-value=4.9e-05 Score=61.66 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=55.7
Q ss_pred CCcCCceeeecc--CCCCCC-----CCccc--CCCCCCCEeeccCCcCCCCCccccc---CCCCCCeeeccCCCCCCC--
Q 045886 2 DLVGLIAVNLSR--NNLTGP-----ITPKI--GELTSLDFLDLSRNLFSGSIPSSLS---QLSGLGVLDLSYNNSSGK-- 67 (184)
Q Consensus 2 ~l~~L~~L~Ls~--N~l~g~-----~p~~~--~~l~~L~~L~ls~N~l~g~~P~~~~---~l~~L~~l~ls~N~l~g~-- 67 (184)
.+++|+.|+|+. |...|. +...+ ..+++|++|+|++|.+....+..+. .+++|+.|+++.|.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 578899999863 222222 11122 3578999999999988754444443 478899999999988753
Q ss_pred --CCCc-cccccCCcccccCCc
Q 045886 68 --IPLG-TQLQSFNASVYAGNL 86 (184)
Q Consensus 68 --~p~~-~~l~~l~~~~~~~N~ 86 (184)
++.. ..+.+|..+++..|.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhhcccCCcceEEECCCCc
Confidence 2222 345677777776664
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.88 E-value=0.00017 Score=52.70 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=59.4
Q ss_pred CcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeec--cCCCCCCCCCCc-
Q 045886 3 LVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDL--SYNNSSGKIPLG- 71 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~l--s~N~l~g~~p~~- 71 (184)
.++|++|+|++|.+... +...+...+.|++|+|++|.+... +...+...++|++|++ ++|.+...-...
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 46899999999999732 333455568899999999999843 4556777889999999 889886321110
Q ss_pred ----cccccCCcccccCCc
Q 045886 72 ----TQLQSFNASVYAGNL 86 (184)
Q Consensus 72 ----~~l~~l~~~~~~~N~ 86 (184)
...+++..+++.+|.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCcCEEeccCCC
Confidence 223566777776653
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.01 E-value=0.0013 Score=53.32 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=53.0
Q ss_pred CcCCceeeeccCCCCCCCCcccC--CCCCCCEeeccC--CcCCCC-----Ccccc--cCCCCCCeeeccCCCCCCCCCCc
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIG--ELTSLDFLDLSR--NLFSGS-----IPSSL--SQLSGLGVLDLSYNNSSGKIPLG 71 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~ls~--N~l~g~-----~P~~~--~~l~~L~~l~ls~N~l~g~~p~~ 71 (184)
+.+|+.|+|..+.+.......+. .+++|++|+|+. |...|. +...+ ..+++|++|++++|.+....+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56899999998887643333333 789999999864 332222 11122 24789999999999886432211
Q ss_pred ----cccccCCcccccCCc
Q 045886 72 ----TQLQSFNASVYAGNL 86 (184)
Q Consensus 72 ----~~l~~l~~~~~~~N~ 86 (184)
..+..+..++++.|.
T Consensus 272 la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHCSSGGGCSEEECCSSC
T ss_pred HHhCccCCCCCEEECCCCC
Confidence 235567777776654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.61 E-value=0.0028 Score=46.17 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=35.8
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCc-CCCCCcccccCC----CCCCeeeccCCC
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNL-FSGSIPSSLSQL----SGLGVLDLSYNN 63 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l----~~L~~l~ls~N~ 63 (184)
.|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+ ++|++|+++++.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 36777888777663333445677778888887774 553222234443 357777777753
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.14 E-value=0.037 Score=45.15 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=28.2
Q ss_pred CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCC-----CCCcccccCCCCCCeeecc
Q 045886 5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFS-----GSIPSSLSQLSGLGVLDLS 60 (184)
Q Consensus 5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~-----g~~P~~~~~l~~L~~l~ls 60 (184)
+|+.+++ .|.++..-+..|.++++|+.+++.+|.+. ..-+..|..+++|+.+++.
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 4555555 34444222334556666666666665543 1222345556666666655
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.13 E-value=0.0024 Score=46.49 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=45.2
Q ss_pred CCcCCceeeeccCC-CCCCCCcccCCC----CCCCEeeccCCc-CCCCCcccccCCCCCCeeeccCCC
Q 045886 2 DLVGLIAVNLSRNN-LTGPITPKIGEL----TSLDFLDLSRNL-FSGSIPSSLSQLSGLGVLDLSYNN 63 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~ls~N~-l~g~~P~~~~~l~~L~~l~ls~N~ 63 (184)
.+++|+.|+|+++. ++..--..+..+ ++|++|+++++. ++..--..+..+++|++|++++..
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 67899999999985 663222334554 379999999975 774323457789999999998864
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.89 E-value=0.065 Score=43.68 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=33.6
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
+|.+|+.++|+.|+++ .+|.......+|+.+.+..+ ++..-...|..+++|+.+++..|
T Consensus 178 ~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 178 YCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred CcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 3566666777666666 44444223456666666533 44223345666777777776653
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.04 E-value=0.035 Score=41.01 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=44.6
Q ss_pred cCCceeeeccC-CCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCC
Q 045886 4 VGLIAVNLSRN-NLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 4 ~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
+.|+.|+|++| ++... +-..+..=..|+.|+|++|++... +-..+..-+.|+.|+|+.|.+.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 57899999985 66521 223355567899999999999732 2233445678999999999986
No 158
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.09 E-value=0.17 Score=27.86 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=12.5
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhcccc
Q 045886 127 FYVSSILGFFVGFWGVCGYLMLNRSWS 153 (184)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
++.+++.+++++++++++.++|.|+++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 333444445554444444445555443
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.04 E-value=0.042 Score=40.59 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=42.2
Q ss_pred cCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCC
Q 045886 4 VGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNN 63 (184)
Q Consensus 4 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~ 63 (184)
+.|+.|+|++|++... +-..+..=+.|++|+|++|.|... +-..+..-+.|+.|++++|.
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 5789999999999722 222233457899999999999832 12234445679999998753
No 160
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=91.10 E-value=0.17 Score=26.92 Aligned_cols=23 Identities=30% Similarity=0.493 Sum_probs=13.9
Q ss_pred ceeehhhHHHHHHHHHHHHHHHh
Q 045886 126 GFYVSSILGFFVGFWGVCGYLML 148 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
+.+.+++++.++++.++.++.+|
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHHHHHH
Confidence 45677777777665555544443
No 161
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=90.99 E-value=0.13 Score=28.25 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=12.5
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhccc
Q 045886 127 FYVSSILGFFVGFWGVCGYLMLNRSW 152 (184)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.+++.++|+++.+++.+..++|.||+
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhheehh
Confidence 45566666444444444444444444
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.24 E-value=0.34 Score=38.51 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=43.0
Q ss_pred CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
++..|+.+++..+ +. .++ ..|.++.+|+.+.+.++.++..-...|.++.+|+.+++..+
T Consensus 261 ~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 261 NCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred eeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 3567788887543 55 444 45788899999999988887333467888899999988654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.90 E-value=0.28 Score=39.41 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
.+.+|+.+.+..+ ++ .++ ..|.++.+|+.+++..+ ++-.-..+|.++.+|+.+++..|
T Consensus 295 ~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 4677888888654 66 444 45888899999999754 66233457888899999988765
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.00 E-value=0.69 Score=37.05 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=53.3
Q ss_pred CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc--cccccCC
Q 045886 2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG--TQLQSFN 78 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~--~~l~~l~ 78 (184)
++..|+.+++. +.++ .++ ..|.++.+|+.+++..+ ++-.-..+|.++.+|+.+.+..+ ++ .++.. ....+|.
T Consensus 286 ~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 286 NCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALN 360 (394)
T ss_dssp TCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred cccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence 46778888885 5566 455 45888899999999865 55233457888899999988654 33 33332 3445666
Q ss_pred cccccCCc
Q 045886 79 ASVYAGNL 86 (184)
Q Consensus 79 ~~~~~~N~ 86 (184)
.+.+.++.
T Consensus 361 ~i~~~~~~ 368 (394)
T 4gt6_A 361 NIEYSGSR 368 (394)
T ss_dssp EEEESSCH
T ss_pred EEEECCce
Confidence 66666653
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=88.54 E-value=0.24 Score=27.25 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=11.7
Q ss_pred ehhhHHHHHHHHHHHHHHHhhcccc
Q 045886 129 VSSILGFFVGFWGVCGYLMLNRSWS 153 (184)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
.+++.+++++++++++.++|.|+++
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeehHHHHHHHHHHHHHHHHhhhhh
Confidence 3444445554444444445555443
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.74 E-value=0.77 Score=36.79 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=35.2
Q ss_pred CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
+..++.+.+..+.+. ...|..+.+|+.+.+..+ ++..-..+|..+.+|+.+++.++
T Consensus 275 ~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 445555555544322 234677888888888765 55233456788888888888654
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.30 E-value=1.4 Score=35.25 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=40.8
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N 62 (184)
++..|+.+.+..+..+ .-...|.++..|+.+.+. +.++..-...|..+.+|+.+++..+
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG 321 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence 4567888888665443 334457888899999986 4555233356888899999988654
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.03 E-value=1.5 Score=34.61 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=42.9
Q ss_pred CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886 2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65 (184)
Q Consensus 2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~ 65 (184)
++..|+.+.+..+ ++..-...|.++..|+.+.+..+ ++..-...|..+.+|+.+++.++.+.
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc
Confidence 3567888888665 55223345778888999988754 44223346788899999998877665
No 169
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=67.91 E-value=2.4 Score=22.45 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=4.3
Q ss_pred eehhhHHHHH
Q 045886 128 YVSSILGFFV 137 (184)
Q Consensus 128 ~~~~~~~~~~ 137 (184)
..+++.++++
T Consensus 16 ~~~vv~Gv~l 25 (41)
T 2k9y_A 16 IGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3344444444
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=67.04 E-value=1.2 Score=23.15 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=9.3
Q ss_pred eehhhHHHHHHHHHHHHHHHhhcc
Q 045886 128 YVSSILGFFVGFWGVCGYLMLNRS 151 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
+++.++++++.+++.....++.||
T Consensus 10 IaagVvglll~vii~l~~~~~iRR 33 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred eHHHHHHHHHHHHHHHHhheEEee
Confidence 444444533333333333334433
No 171
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.48 E-value=5.8 Score=24.49 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=5.7
Q ss_pred hhHHHhhhhhhhhhh
Q 045886 154 YGYFNFLTGMKDWVY 168 (184)
Q Consensus 154 ~~~~~~~~~~~~~~~ 168 (184)
+-|-++.++.....|
T Consensus 42 rE~~kFEkE~~~~~w 56 (79)
T 2knc_B 42 KEFAKFEEERARAKW 56 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 333333344333333
No 172
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=59.60 E-value=7 Score=19.85 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=13.5
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhh
Q 045886 126 GFYVSSILGFFVGFWGVCGYLMLN 149 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
+.+.+++++-+++.+++...+++.
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhhe
Confidence 456667777666555555444443
No 173
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=57.30 E-value=7.5 Score=19.90 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=12.9
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhc
Q 045886 127 FYVSSILGFFVGFWGVCGYLMLNR 150 (184)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
..+.+++|+++++.++...+.+.|
T Consensus 8 malt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeEEEc
Confidence 344556666666555555555444
No 174
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=51.13 E-value=3 Score=23.84 Aligned_cols=10 Identities=10% Similarity=-0.204 Sum_probs=4.4
Q ss_pred ceeehhhHHH
Q 045886 126 GFYVSSILGF 135 (184)
Q Consensus 126 ~~~~~~~~~~ 135 (184)
++++..+++.
T Consensus 10 WiIi~svl~G 19 (54)
T 2l8s_A 10 WVILLSAFAG 19 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 175
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=49.55 E-value=11 Score=20.24 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.3
Q ss_pred ceeehhhHHH
Q 045886 126 GFYVSSILGF 135 (184)
Q Consensus 126 ~~~~~~~~~~ 135 (184)
++++..+++.
T Consensus 11 wiIi~s~l~G 20 (42)
T 2k1a_A 11 WWVLVGVLGG 20 (42)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 176
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.73 E-value=15 Score=20.85 Aligned_cols=11 Identities=18% Similarity=0.310 Sum_probs=4.8
Q ss_pred ceeehhhHHHH
Q 045886 126 GFYVSSILGFF 136 (184)
Q Consensus 126 ~~~~~~~~~~~ 136 (184)
++++..+++.+
T Consensus 13 wiIi~svl~GL 23 (54)
T 2knc_A 13 WWVLVGVLGGL 23 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 177
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.26 E-value=1.1e+02 Score=19.21 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=24.4
Q ss_pred cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccC
Q 045886 22 PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61 (184)
Q Consensus 22 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~ 61 (184)
..|.++.+|+.+.+..+ ++-.-..+|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34677777777777764 3313345677777777776644
No 178
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=27.55 E-value=43 Score=19.82 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 045886 132 ILGFFVGFW 140 (184)
Q Consensus 132 ~~~~~~~~~ 140 (184)
++|.+++++
T Consensus 13 vlGg~~~ll 21 (70)
T 2klu_A 13 VLGGVAGLL 21 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 444333333
No 179
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=23.31 E-value=17 Score=28.20 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=0.0
Q ss_pred HHHhhcccch
Q 045886 145 YLMLNRSWSY 154 (184)
Q Consensus 145 ~~~~~~~~~~ 154 (184)
++++.++++.
T Consensus 302 ~~~~~~~~~~ 311 (315)
T 1cd1_A 302 YYIWRRRSAY 311 (315)
T ss_dssp ----------
T ss_pred HhheehhcCC
Confidence 3445555443
Done!