Query 045887
Match_columns 382
No_of_seqs 368 out of 2667
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-54 8.2E-59 443.3 30.2 362 11-382 9-434 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-43 3.9E-48 327.9 18.8 243 137-382 1-273 (287)
3 PLN03210 Resistant to P. syrin 100.0 6E-34 1.3E-38 307.0 26.5 282 64-377 133-455 (1153)
4 PRK04841 transcriptional regul 99.5 4.8E-12 1E-16 135.4 21.8 217 129-371 11-278 (903)
5 PF01637 Arch_ATPase: Archaeal 99.4 4.5E-12 9.7E-17 113.3 12.6 170 134-309 1-233 (234)
6 PRK00411 cdc6 cell division co 99.4 3.5E-10 7.6E-15 109.7 24.7 197 130-330 28-282 (394)
7 TIGR03015 pepcterm_ATPase puta 99.3 4.9E-10 1.1E-14 102.8 22.9 159 151-314 41-242 (269)
8 TIGR02928 orc1/cdc6 family rep 99.3 8.3E-10 1.8E-14 105.9 24.9 177 131-307 14-243 (365)
9 COG2909 MalT ATP-dependent tra 99.2 2.1E-09 4.6E-14 108.0 19.6 217 131-372 18-285 (894)
10 PF05729 NACHT: NACHT domain 99.1 6.6E-10 1.4E-14 93.8 11.7 118 154-277 1-162 (166)
11 PRK00080 ruvB Holliday junctio 99.1 3.9E-09 8.5E-14 99.6 14.7 171 130-312 23-224 (328)
12 TIGR00635 ruvB Holliday juncti 99.0 4.8E-09 1E-13 98.1 14.5 168 133-312 5-203 (305)
13 PRK13342 recombination factor 98.9 8.1E-08 1.8E-12 93.5 18.8 156 132-312 12-198 (413)
14 COG3903 Predicted ATPase [Gene 98.9 5.4E-09 1.2E-13 97.5 8.3 214 153-376 14-257 (414)
15 COG1474 CDC6 Cdc6-related prot 98.9 3.6E-07 7.8E-12 86.8 20.8 176 133-310 18-238 (366)
16 TIGR03420 DnaA_homol_Hda DnaA 98.8 1.8E-07 3.9E-12 83.4 16.5 144 137-312 22-203 (226)
17 PRK06893 DNA replication initi 98.8 1.4E-07 3E-12 84.4 15.4 128 152-311 38-204 (229)
18 COG2256 MGS1 ATPase related to 98.8 5.1E-07 1.1E-11 84.1 18.8 139 144-307 39-209 (436)
19 PTZ00112 origin recognition co 98.8 2.9E-07 6.3E-12 93.8 17.9 180 134-313 757-985 (1164)
20 PF13401 AAA_22: AAA domain; P 98.8 1.7E-08 3.7E-13 81.8 7.2 91 153-243 4-96 (131)
21 PRK08727 hypothetical protein; 98.8 3E-07 6.5E-12 82.4 15.6 147 129-307 16-201 (233)
22 PRK07003 DNA polymerase III su 98.7 1.4E-06 3.1E-11 88.1 20.5 170 129-310 13-221 (830)
23 PRK12402 replication factor C 98.7 7.4E-07 1.6E-11 84.5 17.2 174 130-310 13-226 (337)
24 PRK08084 DNA replication initi 98.7 9.8E-07 2.1E-11 79.2 15.3 140 139-310 31-209 (235)
25 cd01128 rho_factor Transcripti 98.6 7.1E-08 1.5E-12 86.8 7.5 90 152-243 15-112 (249)
26 PF13191 AAA_16: AAA ATPase do 98.6 1E-07 2.2E-12 82.0 8.1 44 134-177 2-48 (185)
27 PF05496 RuvB_N: Holliday junc 98.6 7.6E-07 1.6E-11 77.5 12.2 175 130-315 22-226 (233)
28 PRK05642 DNA replication initi 98.6 3.5E-06 7.5E-11 75.5 16.8 126 153-310 45-208 (234)
29 PLN03025 replication factor C 98.6 2.3E-06 5.1E-11 80.4 16.3 156 132-307 13-197 (319)
30 PRK14949 DNA polymerase III su 98.6 1.9E-06 4.2E-11 88.8 16.6 157 130-308 14-218 (944)
31 PRK14961 DNA polymerase III su 98.6 5.6E-06 1.2E-10 79.2 18.4 167 130-307 14-217 (363)
32 PRK12323 DNA polymerase III su 98.6 1.8E-06 3.9E-11 86.2 15.3 174 130-310 14-225 (700)
33 PRK09087 hypothetical protein; 98.6 2.3E-06 4.9E-11 76.2 14.6 118 152-310 43-195 (226)
34 PTZ00202 tuzin; Provisional 98.6 2E-06 4.4E-11 81.7 14.6 141 126-277 256-433 (550)
35 PRK04195 replication factor C 98.5 5.7E-06 1.2E-10 82.2 18.7 158 132-314 14-206 (482)
36 PRK00440 rfc replication facto 98.5 3.5E-06 7.7E-11 79.1 16.5 155 132-308 17-201 (319)
37 KOG2028 ATPase related to the 98.5 1.8E-06 4E-11 79.3 13.0 141 144-305 153-331 (554)
38 PRK14960 DNA polymerase III su 98.5 4E-06 8.6E-11 84.0 16.5 167 130-308 13-217 (702)
39 PRK14956 DNA polymerase III su 98.5 1.7E-06 3.8E-11 84.0 13.4 166 129-306 15-218 (484)
40 PRK09112 DNA polymerase III su 98.5 6.2E-06 1.4E-10 78.1 16.6 175 128-311 19-241 (351)
41 PF00308 Bac_DnaA: Bacterial d 98.5 3.9E-06 8.5E-11 74.4 14.2 134 153-307 34-205 (219)
42 PRK14963 DNA polymerase III su 98.5 2.5E-06 5.4E-11 84.6 14.1 167 133-307 15-214 (504)
43 PRK13341 recombination factor 98.5 3.4E-06 7.5E-11 86.8 15.4 149 132-305 28-212 (725)
44 PRK09376 rho transcription ter 98.5 4.4E-07 9.6E-12 85.4 8.1 89 153-243 169-265 (416)
45 PRK08903 DnaA regulatory inact 98.5 4.8E-06 1E-10 74.4 14.5 139 140-314 28-203 (227)
46 PF05621 TniB: Bacterial TniB 98.5 1.6E-05 3.5E-10 72.4 17.8 172 138-309 43-260 (302)
47 COG3899 Predicted ATPase [Gene 98.5 5.7E-06 1.2E-10 87.1 17.1 232 134-375 2-325 (849)
48 cd00009 AAA The AAA+ (ATPases 98.5 1.4E-06 3.1E-11 71.3 10.2 57 136-195 2-58 (151)
49 PF13173 AAA_14: AAA domain 98.5 1E-06 2.3E-11 71.2 9.2 96 153-270 2-127 (128)
50 PRK07471 DNA polymerase III su 98.5 1.9E-05 4.1E-10 75.3 18.6 169 131-310 18-238 (365)
51 PRK14962 DNA polymerase III su 98.4 1.4E-05 3.1E-10 78.6 17.8 162 131-313 13-222 (472)
52 PRK05564 DNA polymerase III su 98.4 1.7E-05 3.7E-10 74.4 17.4 150 134-308 6-188 (313)
53 TIGR00678 holB DNA polymerase 98.4 1.5E-05 3.3E-10 68.9 15.8 137 143-306 3-187 (188)
54 PRK07940 DNA polymerase III su 98.4 1.6E-05 3.4E-10 76.5 17.1 157 134-308 7-211 (394)
55 PRK14964 DNA polymerase III su 98.4 1.6E-05 3.5E-10 78.0 17.3 157 130-307 11-214 (491)
56 PRK14087 dnaA chromosomal repl 98.4 6.9E-06 1.5E-10 80.6 14.5 161 153-330 141-348 (450)
57 PRK08691 DNA polymerase III su 98.4 8.8E-06 1.9E-10 82.3 15.2 154 129-309 13-219 (709)
58 PF14516 AAA_35: AAA-like doma 98.4 3.5E-05 7.6E-10 72.7 18.6 175 132-317 11-246 (331)
59 PRK06645 DNA polymerase III su 98.4 2.9E-05 6.3E-10 76.8 18.4 169 130-307 19-226 (507)
60 PRK07994 DNA polymerase III su 98.4 2E-05 4.2E-10 79.9 17.2 167 130-308 14-218 (647)
61 TIGR00767 rho transcription te 98.4 1.4E-06 3E-11 82.5 8.2 89 153-243 168-264 (415)
62 PRK14957 DNA polymerase III su 98.3 3.2E-05 6.9E-10 77.1 18.1 160 130-310 14-221 (546)
63 TIGR03345 VI_ClpV1 type VI sec 98.3 1.3E-05 2.8E-10 84.5 16.3 157 133-303 188-389 (852)
64 PRK14951 DNA polymerase III su 98.3 2.1E-05 4.6E-10 79.4 17.0 171 129-309 13-224 (618)
65 TIGR02903 spore_lon_C ATP-depe 98.3 7.9E-05 1.7E-09 76.0 21.3 177 131-313 153-398 (615)
66 KOG2543 Origin recognition com 98.3 2.1E-05 4.5E-10 73.0 15.1 139 133-277 7-192 (438)
67 PRK14958 DNA polymerase III su 98.3 1.7E-05 3.6E-10 79.0 15.8 158 129-308 13-218 (509)
68 TIGR02639 ClpA ATP-dependent C 98.3 1.4E-05 3.1E-10 83.3 15.4 133 133-278 183-358 (731)
69 PRK05896 DNA polymerase III su 98.3 3.2E-05 7E-10 77.4 16.9 170 130-311 14-222 (605)
70 TIGR01242 26Sp45 26S proteasom 98.3 6.2E-06 1.3E-10 79.1 10.7 145 134-304 124-328 (364)
71 TIGR02397 dnaX_nterm DNA polym 98.2 0.00011 2.3E-09 70.2 18.6 158 132-311 14-219 (355)
72 PRK14970 DNA polymerase III su 98.2 0.00011 2.3E-09 70.6 17.8 154 131-305 16-204 (367)
73 CHL00095 clpC Clp protease ATP 98.2 1.5E-05 3.3E-10 84.1 12.9 132 133-277 180-353 (821)
74 PRK03992 proteasome-activating 98.2 3.3E-05 7.2E-10 74.5 14.1 145 134-304 133-337 (389)
75 PRK14088 dnaA chromosomal repl 98.2 4.7E-05 1E-09 74.6 15.2 167 143-330 119-332 (440)
76 PRK14955 DNA polymerase III su 98.2 5.6E-05 1.2E-09 73.3 15.5 172 131-307 15-225 (397)
77 PRK09111 DNA polymerase III su 98.2 0.0001 2.2E-09 74.6 17.8 174 129-311 21-234 (598)
78 PRK14969 DNA polymerase III su 98.2 6E-05 1.3E-09 75.4 16.1 153 131-305 15-215 (527)
79 TIGR00362 DnaA chromosomal rep 98.2 5.7E-05 1.2E-09 73.5 15.2 157 153-330 136-337 (405)
80 PRK14959 DNA polymerase III su 98.2 0.00019 4E-09 72.4 18.8 171 132-314 16-225 (624)
81 PRK00149 dnaA chromosomal repl 98.1 5.7E-05 1.2E-09 74.5 14.7 155 153-330 148-349 (450)
82 PRK14952 DNA polymerase III su 98.1 0.00014 3E-09 73.3 17.6 164 130-305 11-214 (584)
83 PRK07764 DNA polymerase III su 98.1 0.00011 2.3E-09 77.0 17.3 154 131-307 14-218 (824)
84 PRK14086 dnaA chromosomal repl 98.1 0.00033 7.2E-09 70.3 19.6 157 154-331 315-516 (617)
85 PHA02544 44 clamp loader, smal 98.1 0.00013 2.9E-09 68.5 16.1 47 130-176 19-66 (316)
86 PRK14950 DNA polymerase III su 98.1 8.7E-05 1.9E-09 75.5 15.4 170 130-310 14-221 (585)
87 PRK11331 5-methylcytosine-spec 98.1 2.4E-05 5.1E-10 75.5 10.6 67 134-203 177-243 (459)
88 PTZ00361 26 proteosome regulat 98.1 3.1E-05 6.8E-10 75.2 11.5 43 134-176 185-240 (438)
89 PRK12422 chromosomal replicati 98.1 0.00037 8.1E-09 68.3 19.0 129 153-304 141-307 (445)
90 PRK08451 DNA polymerase III su 98.1 0.00025 5.4E-09 70.5 17.8 159 131-310 13-218 (535)
91 PF10443 RNA12: RNA12 protein; 98.1 0.0004 8.6E-09 66.2 18.3 178 137-321 1-289 (431)
92 PRK14953 DNA polymerase III su 98.1 0.00033 7.1E-09 69.4 18.6 155 131-310 15-220 (486)
93 PRK14971 DNA polymerase III su 98.1 0.00022 4.8E-09 72.6 17.8 154 131-306 16-218 (614)
94 PRK08116 hypothetical protein; 98.1 8.4E-05 1.8E-09 67.9 13.5 73 154-243 115-187 (268)
95 PRK11034 clpA ATP-dependent Cl 98.1 8.8E-05 1.9E-09 77.0 15.0 132 134-278 188-362 (758)
96 PRK06620 hypothetical protein; 98.0 6.9E-05 1.5E-09 66.1 12.0 110 154-306 45-185 (214)
97 PRK07133 DNA polymerase III su 98.0 0.00026 5.7E-09 72.4 17.5 162 130-305 16-214 (725)
98 KOG2227 Pre-initiation complex 98.0 0.00035 7.6E-09 66.7 16.8 148 132-280 150-340 (529)
99 COG3267 ExeA Type II secretory 98.0 0.00073 1.6E-08 59.8 17.5 158 150-312 48-247 (269)
100 PRK08181 transposase; Validate 98.0 0.00033 7.1E-09 63.9 15.9 76 146-243 101-176 (269)
101 TIGR03346 chaperone_ClpB ATP-d 98.0 0.00015 3.4E-09 76.9 15.9 133 133-278 174-349 (852)
102 PRK14954 DNA polymerase III su 98.0 0.00044 9.5E-09 70.2 17.9 171 130-305 14-223 (620)
103 PRK06305 DNA polymerase III su 98.0 0.00051 1.1E-08 67.6 17.9 153 131-305 16-217 (451)
104 KOG0989 Replication factor C, 98.0 0.0001 2.3E-09 66.6 11.8 158 132-304 36-224 (346)
105 PRK10865 protein disaggregatio 98.0 0.00017 3.7E-09 76.4 15.3 45 133-177 179-223 (857)
106 KOG0991 Replication factor C, 98.0 0.00017 3.8E-09 62.7 12.5 66 134-201 29-95 (333)
107 TIGR03689 pup_AAA proteasome A 98.0 0.00016 3.4E-09 71.6 13.8 44 134-177 184-240 (512)
108 PRK05563 DNA polymerase III su 98.0 0.00059 1.3E-08 68.9 18.2 168 128-307 12-217 (559)
109 COG2255 RuvB Holliday junction 97.9 0.00038 8.2E-09 62.4 14.3 213 131-354 25-275 (332)
110 COG0466 Lon ATP-dependent Lon 97.9 0.002 4.3E-08 64.8 20.8 48 134-184 325-378 (782)
111 PRK05707 DNA polymerase III su 97.9 0.00063 1.4E-08 64.0 16.7 57 247-310 138-203 (328)
112 PRK14948 DNA polymerase III su 97.9 0.00076 1.7E-08 68.8 18.2 171 131-310 15-222 (620)
113 PRK14965 DNA polymerase III su 97.9 0.00051 1.1E-08 69.7 16.8 170 129-310 13-221 (576)
114 PRK07399 DNA polymerase III su 97.9 0.0021 4.6E-08 60.1 19.7 170 134-310 6-221 (314)
115 PRK06647 DNA polymerase III su 97.9 0.0008 1.7E-08 67.8 17.8 167 130-308 14-218 (563)
116 PTZ00454 26S protease regulato 97.9 0.0003 6.5E-09 67.9 14.1 146 134-305 147-352 (398)
117 PF01695 IstB_IS21: IstB-like 97.9 6.6E-05 1.4E-09 64.2 8.0 72 152-243 46-117 (178)
118 PRK12377 putative replication 97.8 0.00012 2.6E-09 65.9 9.9 73 152-243 100-172 (248)
119 PRK09183 transposase/IS protei 97.8 0.00056 1.2E-08 62.2 14.4 24 153-176 102-125 (259)
120 smart00382 AAA ATPases associa 97.8 8.3E-05 1.8E-09 60.1 8.2 85 154-243 3-87 (148)
121 COG1222 RPT1 ATP-dependent 26S 97.8 0.00051 1.1E-08 63.6 13.7 172 134-331 153-393 (406)
122 PRK06526 transposase; Provisio 97.8 0.00018 3.9E-09 65.1 10.8 25 153-177 98-122 (254)
123 PRK07952 DNA replication prote 97.8 0.002 4.4E-08 57.8 17.2 86 140-243 84-171 (244)
124 TIGR01241 FtsH_fam ATP-depende 97.8 0.00093 2E-08 66.8 16.4 70 258-331 218-296 (495)
125 COG0593 DnaA ATPase involved i 97.8 0.00056 1.2E-08 65.4 13.8 114 152-286 112-265 (408)
126 PF05673 DUF815: Protein of un 97.8 0.0015 3.3E-08 57.9 15.5 46 132-177 27-76 (249)
127 TIGR02881 spore_V_K stage V sp 97.8 0.0005 1.1E-08 62.7 13.1 26 152-177 41-66 (261)
128 PRK08118 topology modulation p 97.8 1.5E-05 3.2E-10 67.5 2.7 36 154-189 2-37 (167)
129 PRK08769 DNA polymerase III su 97.8 0.0019 4.1E-08 60.4 16.6 149 138-310 10-208 (319)
130 PF00004 AAA: ATPase family as 97.7 7.1E-05 1.5E-09 60.3 6.2 21 156-176 1-21 (132)
131 CHL00181 cbbX CbbX; Provisiona 97.7 0.0027 5.9E-08 58.6 16.8 23 154-176 60-82 (287)
132 TIGR02880 cbbX_cfxQ probable R 97.7 0.00075 1.6E-08 62.3 13.1 23 155-177 60-82 (284)
133 PF04665 Pox_A32: Poxvirus A32 97.7 0.0001 2.2E-09 65.6 6.8 36 154-192 14-49 (241)
134 PHA00729 NTP-binding motif con 97.7 0.00021 4.5E-09 62.9 8.6 34 143-176 7-40 (226)
135 TIGR00763 lon ATP-dependent pr 97.7 0.005 1.1E-07 65.0 20.5 43 134-176 322-370 (775)
136 COG0542 clpA ATP-binding subun 97.7 0.0024 5.2E-08 65.7 17.3 101 133-243 492-602 (786)
137 PRK08939 primosomal protein Dn 97.6 0.0098 2.1E-07 55.4 19.7 88 136-243 135-226 (306)
138 TIGR00602 rad24 checkpoint pro 97.6 0.00052 1.1E-08 69.7 11.7 43 134-176 86-133 (637)
139 PRK12608 transcription termina 97.6 0.00044 9.6E-09 65.3 10.3 102 140-243 119-229 (380)
140 PRK10787 DNA-binding ATP-depen 97.6 0.0041 8.9E-08 65.3 18.4 43 134-176 324-372 (784)
141 CHL00176 ftsH cell division pr 97.6 0.002 4.4E-08 65.8 15.6 152 153-330 216-423 (638)
142 KOG0733 Nuclear AAA ATPase (VC 97.6 0.0014 3E-08 64.7 13.5 88 134-243 192-291 (802)
143 CHL00195 ycf46 Ycf46; Provisio 97.6 0.011 2.4E-07 58.6 20.0 24 153-176 259-282 (489)
144 PRK07261 topology modulation p 97.6 0.00025 5.5E-09 60.3 7.5 35 155-189 2-36 (171)
145 TIGR03499 FlhF flagellar biosy 97.6 0.012 2.6E-07 54.3 18.9 86 153-242 194-280 (282)
146 PRK12727 flagellar biosynthesi 97.5 0.0034 7.3E-08 62.0 15.4 87 153-243 350-437 (559)
147 TIGR02237 recomb_radB DNA repa 97.5 0.00041 8.9E-09 61.0 8.3 86 153-243 12-106 (209)
148 PRK08058 DNA polymerase III su 97.5 0.0045 9.8E-08 58.4 15.5 41 137-177 11-52 (329)
149 PRK06871 DNA polymerase III su 97.5 0.0088 1.9E-07 56.0 17.1 152 139-307 9-200 (325)
150 KOG1514 Origin recognition com 97.5 0.0037 8E-08 62.7 15.1 174 134-311 398-622 (767)
151 TIGR01243 CDC48 AAA family ATP 97.5 0.0026 5.7E-08 66.7 15.0 126 153-304 487-657 (733)
152 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0055 1.2E-07 55.9 15.4 56 138-201 8-63 (262)
153 KOG2228 Origin recognition com 97.4 0.002 4.3E-08 59.2 11.7 143 133-278 25-219 (408)
154 PRK06835 DNA replication prote 97.4 0.00076 1.6E-08 63.4 9.3 36 154-192 184-219 (329)
155 TIGR02902 spore_lonB ATP-depen 97.4 0.005 1.1E-07 61.9 15.8 45 132-176 65-109 (531)
156 PRK10536 hypothetical protein; 97.4 0.0015 3.3E-08 58.5 10.7 41 134-176 57-97 (262)
157 PF13177 DNA_pol3_delta2: DNA 97.4 0.0053 1.2E-07 51.6 13.3 41 137-177 2-43 (162)
158 PRK06090 DNA polymerase III su 97.4 0.031 6.8E-07 52.2 19.5 151 139-310 10-201 (319)
159 PRK06921 hypothetical protein; 97.4 0.0011 2.3E-08 60.6 9.5 39 152-192 116-154 (266)
160 COG1484 DnaC DNA replication p 97.4 0.004 8.8E-08 56.4 13.1 73 152-243 104-176 (254)
161 KOG2004 Mitochondrial ATP-depe 97.4 0.0046 1E-07 62.2 14.2 62 134-201 413-480 (906)
162 COG1373 Predicted ATPase (AAA+ 97.4 0.0065 1.4E-07 58.8 15.1 112 137-273 22-162 (398)
163 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0016 3.5E-08 58.3 10.3 89 153-243 19-124 (235)
164 PRK14722 flhF flagellar biosyn 97.4 0.0066 1.4E-07 57.8 14.8 87 153-243 137-224 (374)
165 cd01393 recA_like RecA is a b 97.4 0.0011 2.3E-08 59.1 9.0 87 153-243 19-123 (226)
166 PRK07993 DNA polymerase III su 97.4 0.012 2.7E-07 55.4 16.5 151 139-307 9-201 (334)
167 PRK05541 adenylylsulfate kinas 97.4 0.00059 1.3E-08 58.3 7.0 37 152-191 6-42 (176)
168 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0055 1.2E-07 60.6 14.1 128 153-304 545-718 (802)
169 PF13207 AAA_17: AAA domain; P 97.3 0.00017 3.6E-09 57.4 3.3 22 155-176 1-22 (121)
170 PRK05703 flhF flagellar biosyn 97.3 0.016 3.5E-07 56.6 17.6 87 153-243 221-308 (424)
171 PRK10867 signal recognition pa 97.3 0.015 3.2E-07 56.7 17.1 26 152-177 99-124 (433)
172 KOG0735 AAA+-type ATPase [Post 97.3 0.0034 7.3E-08 63.0 12.7 128 153-303 431-608 (952)
173 KOG0734 AAA+-type ATPase conta 97.3 0.0041 8.9E-08 60.5 12.7 39 138-176 313-360 (752)
174 KOG0731 AAA+-type ATPase conta 97.3 0.0054 1.2E-07 62.7 14.1 39 138-176 320-367 (774)
175 PF00448 SRP54: SRP54-type pro 97.3 0.0015 3.3E-08 56.7 8.7 88 153-243 1-92 (196)
176 PRK09361 radB DNA repair and r 97.3 0.0011 2.5E-08 58.9 8.1 85 153-243 23-116 (225)
177 PF10236 DAP3: Mitochondrial r 97.2 0.018 3.8E-07 53.9 16.0 49 259-307 258-306 (309)
178 cd01120 RecA-like_NTPases RecA 97.2 0.0022 4.8E-08 53.3 9.2 39 155-196 1-39 (165)
179 KOG0727 26S proteasome regulat 97.2 0.062 1.3E-06 47.7 18.0 26 151-176 187-212 (408)
180 PRK10865 protein disaggregatio 97.2 0.0094 2E-07 63.4 15.6 43 134-176 570-621 (857)
181 TIGR01243 CDC48 AAA family ATP 97.2 0.0083 1.8E-07 63.0 15.0 43 134-176 180-235 (733)
182 PRK06995 flhF flagellar biosyn 97.2 0.032 6.9E-07 55.0 17.8 87 153-243 256-343 (484)
183 cd01394 radB RadB. The archaea 97.2 0.0017 3.7E-08 57.4 8.2 41 153-196 19-59 (218)
184 TIGR02012 tigrfam_recA protein 97.2 0.0012 2.6E-08 61.5 7.4 83 153-243 55-142 (321)
185 KOG0728 26S proteasome regulat 97.2 0.012 2.5E-07 52.1 12.9 146 152-312 180-365 (404)
186 COG1223 Predicted ATPase (AAA+ 97.1 0.0096 2.1E-07 53.0 12.2 134 144-303 136-318 (368)
187 KOG0744 AAA+-type ATPase [Post 97.1 0.0081 1.8E-07 55.0 12.0 25 153-177 177-201 (423)
188 KOG0741 AAA+-type ATPase [Post 97.1 0.024 5.1E-07 55.4 15.6 121 152-300 537-704 (744)
189 PRK14723 flhF flagellar biosyn 97.1 0.045 9.8E-07 56.7 18.8 25 153-177 185-209 (767)
190 PRK00771 signal recognition pa 97.1 0.0085 1.8E-07 58.5 13.0 57 152-211 94-151 (437)
191 cd00983 recA RecA is a bacter 97.1 0.0014 3E-08 61.2 7.2 83 153-243 55-142 (325)
192 TIGR01425 SRP54_euk signal rec 97.1 0.032 7E-07 54.1 16.6 26 152-177 99-124 (429)
193 COG0542 clpA ATP-binding subun 97.1 0.0015 3.2E-08 67.2 7.8 131 133-278 171-346 (786)
194 PRK06696 uridine kinase; Valid 97.1 0.00087 1.9E-08 59.6 5.5 41 137-177 3-46 (223)
195 PLN00020 ribulose bisphosphate 97.1 0.018 3.9E-07 54.3 14.1 25 152-176 147-171 (413)
196 PRK09354 recA recombinase A; P 97.1 0.0018 4E-08 60.9 7.7 83 153-243 60-147 (349)
197 CHL00095 clpC Clp protease ATP 97.1 0.052 1.1E-06 57.8 19.4 44 133-176 510-562 (821)
198 PHA02244 ATPase-like protein 97.0 0.058 1.2E-06 51.1 17.2 36 139-176 107-142 (383)
199 PRK04296 thymidine kinase; Pro 97.0 0.0012 2.5E-08 57.2 5.6 83 154-243 3-87 (190)
200 TIGR00959 ffh signal recogniti 97.0 0.038 8.3E-07 53.8 16.4 25 152-176 98-122 (428)
201 KOG0729 26S proteasome regulat 97.0 0.0077 1.7E-07 53.7 10.5 88 134-243 179-279 (435)
202 KOG1969 DNA replication checkp 97.0 0.0014 3E-08 65.9 6.4 71 152-243 325-396 (877)
203 smart00763 AAA_PrkA PrkA AAA d 97.0 0.0015 3.4E-08 61.4 6.4 46 133-178 52-103 (361)
204 PF08423 Rad51: Rad51; InterP 97.0 0.011 2.3E-07 53.8 11.6 90 153-243 38-142 (256)
205 KOG0743 AAA+-type ATPase [Post 97.0 0.018 3.9E-07 55.2 13.3 150 154-316 236-416 (457)
206 TIGR03346 chaperone_ClpB ATP-d 97.0 0.052 1.1E-06 58.0 18.3 59 133-194 566-633 (852)
207 COG0470 HolB ATPase involved i 97.0 0.013 2.8E-07 55.0 12.5 42 136-177 5-48 (325)
208 PRK09270 nucleoside triphospha 97.0 0.0084 1.8E-07 53.5 10.6 26 151-176 31-56 (229)
209 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0078 1.7E-07 54.0 10.4 49 152-205 20-68 (237)
210 PRK06964 DNA polymerase III su 96.9 0.084 1.8E-06 49.9 17.5 35 142-177 11-45 (342)
211 COG2812 DnaX DNA polymerase II 96.9 0.0035 7.6E-08 61.9 8.5 164 129-303 13-213 (515)
212 TIGR02238 recomb_DMC1 meiotic 96.9 0.005 1.1E-07 57.5 9.1 90 153-243 96-200 (313)
213 KOG0730 AAA+-type ATPase [Post 96.9 0.028 6E-07 56.3 14.4 25 152-176 467-491 (693)
214 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0038 8.3E-08 56.7 7.8 88 153-243 69-172 (274)
215 PRK06067 flagellar accessory p 96.9 0.0078 1.7E-07 53.9 9.8 85 153-243 25-129 (234)
216 TIGR02639 ClpA ATP-dependent C 96.8 0.015 3.3E-07 60.9 12.8 43 134-176 456-507 (731)
217 cd03115 SRP The signal recogni 96.8 0.0065 1.4E-07 51.6 8.3 23 155-177 2-24 (173)
218 PF14532 Sigma54_activ_2: Sigm 96.8 0.002 4.3E-08 52.6 4.9 39 138-176 4-44 (138)
219 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.002 4.3E-08 55.2 5.1 22 155-176 1-22 (183)
220 PLN03187 meiotic recombination 96.8 0.013 2.8E-07 55.4 10.8 90 153-243 126-230 (344)
221 PRK04132 replication factor C 96.8 0.044 9.5E-07 57.6 15.6 129 161-310 574-731 (846)
222 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.3E-08 53.1 3.1 21 156-176 1-21 (129)
223 PRK14974 cell division protein 96.8 0.015 3.3E-07 54.8 11.1 88 152-243 139-231 (336)
224 PF01583 APS_kinase: Adenylyls 96.8 0.00079 1.7E-08 55.9 2.3 35 154-191 3-37 (156)
225 PRK12723 flagellar biosynthesi 96.8 0.014 3E-07 56.1 11.0 89 152-243 173-263 (388)
226 PRK11889 flhF flagellar biosyn 96.8 0.0066 1.4E-07 57.9 8.6 89 152-243 240-329 (436)
227 PTZ00088 adenylate kinase 1; P 96.8 0.0017 3.6E-08 57.9 4.4 22 155-176 8-29 (229)
228 PRK06547 hypothetical protein; 96.8 0.0021 4.5E-08 54.7 4.8 33 144-176 6-38 (172)
229 PRK10733 hflB ATP-dependent me 96.8 0.023 4.9E-07 58.6 13.2 23 154-176 186-208 (644)
230 COG0563 Adk Adenylate kinase a 96.8 0.0037 8E-08 53.4 6.3 22 155-176 2-23 (178)
231 COG1618 Predicted nucleotide k 96.7 0.0015 3.3E-08 53.7 3.7 25 153-177 5-29 (179)
232 PLN03186 DNA repair protein RA 96.7 0.012 2.7E-07 55.5 10.2 90 153-243 123-227 (342)
233 PF12775 AAA_7: P-loop contain 96.7 0.0021 4.5E-08 58.9 4.9 56 142-201 23-78 (272)
234 PRK15429 formate hydrogenlyase 96.7 0.063 1.4E-06 56.0 16.3 45 132-176 376-422 (686)
235 cd00544 CobU Adenosylcobinamid 96.7 0.0029 6.3E-08 53.6 5.3 81 155-243 1-82 (169)
236 COG0541 Ffh Signal recognition 96.7 0.23 5E-06 47.7 18.3 57 152-211 99-156 (451)
237 PRK04301 radA DNA repair and r 96.7 0.014 3.1E-07 54.8 10.3 89 153-243 102-207 (317)
238 KOG0739 AAA+-type ATPase [Post 96.7 0.49 1.1E-05 43.3 21.0 69 153-243 166-234 (439)
239 TIGR02239 recomb_RAD51 DNA rep 96.7 0.016 3.5E-07 54.3 10.5 90 153-243 96-200 (316)
240 TIGR02236 recomb_radA DNA repa 96.7 0.016 3.5E-07 54.2 10.5 89 153-243 95-201 (310)
241 PTZ00035 Rad51 protein; Provis 96.7 0.023 5E-07 53.7 11.5 89 153-243 118-222 (337)
242 COG0468 RecA RecA/RadA recombi 96.7 0.013 2.7E-07 53.6 9.3 87 153-243 60-150 (279)
243 COG4608 AppF ABC-type oligopep 96.7 0.012 2.7E-07 52.8 9.0 87 152-243 38-136 (268)
244 KOG2035 Replication factor C, 96.6 0.11 2.3E-06 46.9 14.7 205 134-355 15-282 (351)
245 KOG0726 26S proteasome regulat 96.6 0.014 3E-07 52.8 9.2 43 134-176 187-242 (440)
246 PRK08699 DNA polymerase III su 96.6 0.087 1.9E-06 49.6 15.1 25 153-177 21-45 (325)
247 PF08433 KTI12: Chromatin asso 96.6 0.0084 1.8E-07 54.8 8.0 25 154-178 2-26 (270)
248 PRK12726 flagellar biosynthesi 96.6 0.011 2.3E-07 56.2 8.9 88 152-243 205-294 (407)
249 cd02027 APSK Adenosine 5'-phos 96.6 0.0077 1.7E-07 49.9 7.1 22 155-176 1-22 (149)
250 COG0464 SpoVK ATPases of the A 96.6 0.024 5.1E-07 56.8 11.9 25 152-176 275-299 (494)
251 PRK05973 replicative DNA helic 96.6 0.03 6.5E-07 50.0 11.0 48 153-205 64-111 (237)
252 PRK15455 PrkA family serine pr 96.6 0.003 6.5E-08 62.8 5.0 44 134-177 78-127 (644)
253 PRK00889 adenylylsulfate kinas 96.6 0.009 2E-07 50.8 7.4 26 152-177 3-28 (175)
254 PRK05800 cobU adenosylcobinami 96.5 0.002 4.3E-08 54.6 3.2 23 154-176 2-24 (170)
255 PRK04328 hypothetical protein; 96.5 0.01 2.2E-07 53.8 7.9 41 152-195 22-62 (249)
256 PF07728 AAA_5: AAA domain (dy 96.5 0.0055 1.2E-07 49.9 5.7 42 156-203 2-43 (139)
257 cd01124 KaiC KaiC is a circadi 96.5 0.0094 2E-07 51.1 7.4 45 155-204 1-45 (187)
258 PF00485 PRK: Phosphoribulokin 96.5 0.0023 5E-08 55.6 3.5 23 155-177 1-23 (194)
259 PF13671 AAA_33: AAA domain; P 96.5 0.0023 4.9E-08 52.4 3.3 22 155-176 1-22 (143)
260 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.011 2.4E-07 53.8 8.1 40 153-195 36-75 (259)
261 TIGR00064 ftsY signal recognit 96.5 0.019 4.2E-07 52.6 9.6 88 151-243 70-163 (272)
262 TIGR00554 panK_bact pantothena 96.5 0.017 3.7E-07 53.2 9.2 26 151-176 60-85 (290)
263 COG1102 Cmk Cytidylate kinase 96.5 0.0037 8E-08 51.5 4.3 44 155-212 2-45 (179)
264 COG1126 GlnQ ABC-type polar am 96.5 0.028 6E-07 48.8 9.7 23 153-175 28-50 (240)
265 cd02025 PanK Pantothenate kina 96.5 0.014 3.1E-07 51.7 8.4 23 155-177 1-23 (220)
266 PRK08233 hypothetical protein; 96.5 0.0024 5.2E-08 54.6 3.4 25 153-177 3-27 (182)
267 PRK06851 hypothetical protein; 96.5 0.036 7.7E-07 52.7 11.4 44 150-195 211-254 (367)
268 PRK05480 uridine/cytidine kina 96.5 0.0028 6.2E-08 55.7 3.8 27 151-177 4-30 (209)
269 PRK08533 flagellar accessory p 96.4 0.021 4.6E-07 51.0 9.3 48 153-205 24-71 (230)
270 TIGR02974 phageshock_pspF psp 96.4 0.11 2.4E-06 49.1 14.5 41 136-176 3-45 (329)
271 PF13481 AAA_25: AAA domain; P 96.4 0.026 5.7E-07 48.7 9.6 87 154-243 33-150 (193)
272 TIGR01817 nifA Nif-specific re 96.4 0.4 8.6E-06 48.5 19.4 45 132-176 196-242 (534)
273 PRK07667 uridine kinase; Provi 96.4 0.0048 1E-07 53.5 4.9 36 142-177 4-41 (193)
274 TIGR03345 VI_ClpV1 type VI sec 96.4 0.012 2.5E-07 62.6 8.6 43 134-176 568-619 (852)
275 PRK06762 hypothetical protein; 96.4 0.0027 5.9E-08 53.5 3.2 24 153-176 2-25 (166)
276 cd03214 ABC_Iron-Siderophores_ 96.4 0.045 9.7E-07 46.8 10.8 86 153-243 25-124 (180)
277 PRK14721 flhF flagellar biosyn 96.4 0.024 5.1E-07 55.0 9.8 87 153-243 191-278 (420)
278 cd02019 NK Nucleoside/nucleoti 96.4 0.0027 5.9E-08 45.0 2.6 23 155-177 1-23 (69)
279 cd03238 ABC_UvrA The excision 96.4 0.033 7.1E-07 47.5 9.6 23 153-175 21-43 (176)
280 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0029 6.4E-08 54.3 3.2 25 152-176 2-26 (188)
281 PRK05022 anaerobic nitric oxid 96.3 0.061 1.3E-06 54.0 13.0 61 132-195 187-249 (509)
282 PRK09519 recA DNA recombinatio 96.3 0.043 9.3E-07 57.1 11.9 83 153-243 60-147 (790)
283 cd01121 Sms Sms (bacterial rad 96.3 0.018 3.9E-07 55.1 8.6 81 153-243 82-167 (372)
284 cd03216 ABC_Carb_Monos_I This 96.3 0.014 3E-07 49.1 7.0 82 153-243 26-109 (163)
285 PRK03839 putative kinase; Prov 96.3 0.003 6.4E-08 54.1 3.0 22 155-176 2-23 (180)
286 PRK03846 adenylylsulfate kinas 96.3 0.015 3.2E-07 50.7 7.4 26 151-176 22-47 (198)
287 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.039 8.4E-07 49.1 10.3 40 153-195 20-59 (229)
288 KOG0735 AAA+-type ATPase [Post 96.3 0.08 1.7E-06 53.6 13.0 127 154-306 702-872 (952)
289 PRK14527 adenylate kinase; Pro 96.3 0.0085 1.8E-07 51.8 5.8 25 152-176 5-29 (191)
290 PRK12724 flagellar biosynthesi 96.3 0.014 3E-07 56.2 7.6 24 153-176 223-246 (432)
291 PF00154 RecA: recA bacterial 96.3 0.0082 1.8E-07 55.9 5.9 83 153-243 53-140 (322)
292 PF06745 KaiC: KaiC; InterPro 96.3 0.005 1.1E-07 54.8 4.3 86 153-243 19-124 (226)
293 TIGR00235 udk uridine kinase. 96.3 0.0038 8.3E-08 54.8 3.5 25 152-176 5-29 (207)
294 PRK04040 adenylate kinase; Pro 96.3 0.0037 8.1E-08 53.9 3.3 24 153-176 2-25 (188)
295 TIGR02655 circ_KaiC circadian 96.3 0.032 6.8E-07 55.7 10.3 86 152-243 262-362 (484)
296 cd01131 PilT Pilus retraction 96.3 0.0085 1.8E-07 52.2 5.6 23 154-176 2-24 (198)
297 PRK12678 transcription termina 96.2 0.0078 1.7E-07 59.7 5.7 89 153-243 416-512 (672)
298 COG2607 Predicted ATPase (AAA+ 96.2 0.049 1.1E-06 48.0 10.0 44 134-177 62-109 (287)
299 COG0552 FtsY Signal recognitio 96.2 0.61 1.3E-05 43.4 17.6 57 151-211 137-195 (340)
300 cd03222 ABC_RNaseL_inhibitor T 96.2 0.051 1.1E-06 46.4 10.1 24 153-176 25-48 (177)
301 PTZ00301 uridine kinase; Provi 96.2 0.0059 1.3E-07 53.6 4.4 24 153-176 3-26 (210)
302 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.026 5.7E-07 47.0 8.0 23 154-176 3-25 (159)
303 PF03205 MobB: Molybdopterin g 96.2 0.0071 1.5E-07 49.5 4.5 39 154-194 1-39 (140)
304 COG1419 FlhF Flagellar GTP-bin 96.2 0.4 8.6E-06 45.9 16.6 100 139-243 185-290 (407)
305 TIGR02858 spore_III_AA stage I 96.2 0.024 5.2E-07 51.7 8.3 27 150-176 108-134 (270)
306 PRK11608 pspF phage shock prot 96.2 0.076 1.6E-06 50.1 12.0 43 134-176 8-52 (326)
307 PRK06002 fliI flagellum-specif 96.2 0.018 3.9E-07 56.0 7.8 87 153-243 165-263 (450)
308 KOG0924 mRNA splicing factor A 96.2 0.035 7.6E-07 55.6 9.8 62 142-211 362-426 (1042)
309 cd03247 ABCC_cytochrome_bd The 96.2 0.041 9E-07 46.9 9.3 24 153-176 28-51 (178)
310 PRK06217 hypothetical protein; 96.2 0.0047 1E-07 53.1 3.4 24 154-177 2-25 (183)
311 PRK00131 aroK shikimate kinase 96.2 0.0046 9.9E-08 52.3 3.3 24 153-176 4-27 (175)
312 PRK11034 clpA ATP-dependent Cl 96.2 0.021 4.5E-07 59.7 8.7 43 134-176 460-511 (758)
313 COG0529 CysC Adenylylsulfate k 96.1 0.016 3.6E-07 48.5 6.3 29 149-177 19-47 (197)
314 PRK00625 shikimate kinase; Pro 96.1 0.0041 8.8E-08 52.9 2.8 22 155-176 2-23 (173)
315 KOG0736 Peroxisome assembly fa 96.1 0.089 1.9E-06 53.7 12.4 88 134-243 674-773 (953)
316 KOG0652 26S proteasome regulat 96.1 0.096 2.1E-06 46.7 11.2 43 134-176 173-228 (424)
317 PF00006 ATP-synt_ab: ATP synt 96.1 0.026 5.6E-07 49.7 7.7 86 153-243 15-114 (215)
318 PF07726 AAA_3: ATPase family 96.1 0.0049 1.1E-07 49.1 2.9 27 156-185 2-28 (131)
319 cd01122 GP4d_helicase GP4d_hel 96.1 0.04 8.7E-07 50.4 9.4 51 154-208 31-81 (271)
320 PF00910 RNA_helicase: RNA hel 96.0 0.004 8.6E-08 48.4 2.2 22 156-177 1-22 (107)
321 cd03230 ABC_DR_subfamily_A Thi 96.0 0.051 1.1E-06 46.1 9.2 24 153-176 26-49 (173)
322 TIGR03498 FliI_clade3 flagella 96.0 0.034 7.3E-07 54.0 8.8 87 153-243 140-239 (418)
323 PTZ00494 tuzin-like protein; P 96.0 1.1 2.5E-05 43.4 18.6 138 130-277 369-543 (664)
324 KOG0738 AAA+-type ATPase [Post 96.0 0.06 1.3E-06 50.7 10.0 23 154-176 246-268 (491)
325 PRK08972 fliI flagellum-specif 96.0 0.038 8.2E-07 53.6 9.1 86 153-243 162-261 (444)
326 cd02023 UMPK Uridine monophosp 96.0 0.0047 1E-07 53.7 2.7 22 155-176 1-22 (198)
327 cd03246 ABCC_Protease_Secretio 96.0 0.05 1.1E-06 46.2 9.0 24 153-176 28-51 (173)
328 PRK07132 DNA polymerase III su 96.0 0.61 1.3E-05 43.3 16.6 144 140-309 4-184 (299)
329 PRK13765 ATP-dependent proteas 96.0 0.016 3.5E-07 59.2 6.7 75 132-211 31-105 (637)
330 PRK08149 ATP synthase SpaL; Va 96.0 0.028 6E-07 54.6 8.0 87 152-243 150-250 (428)
331 COG0467 RAD55 RecA-superfamily 96.0 0.016 3.4E-07 52.8 6.1 49 152-205 22-70 (260)
332 cd01135 V_A-ATPase_B V/A-type 96.0 0.037 8E-07 50.3 8.3 91 152-243 68-175 (276)
333 PRK13531 regulatory ATPase Rav 96.0 0.011 2.4E-07 57.9 5.2 42 133-176 21-62 (498)
334 COG1936 Predicted nucleotide k 96.0 0.0056 1.2E-07 51.1 2.8 20 155-174 2-21 (180)
335 cd00984 DnaB_C DnaB helicase C 96.0 0.056 1.2E-06 48.5 9.6 50 154-207 14-63 (242)
336 PRK14529 adenylate kinase; Pro 95.9 0.032 7E-07 49.4 7.6 82 155-243 2-85 (223)
337 TIGR00041 DTMP_kinase thymidyl 95.9 0.038 8.1E-07 47.8 8.1 24 154-177 4-27 (195)
338 COG3640 CooC CO dehydrogenase 95.9 0.013 2.8E-07 51.4 5.0 42 155-198 2-43 (255)
339 TIGR02329 propionate_PrpR prop 95.9 0.11 2.4E-06 52.1 12.3 43 134-176 214-258 (526)
340 COG1703 ArgK Putative periplas 95.9 0.014 2.9E-07 53.2 5.2 63 142-205 38-102 (323)
341 cd01132 F1_ATPase_alpha F1 ATP 95.9 0.025 5.5E-07 51.4 7.0 86 153-243 69-170 (274)
342 TIGR02322 phosphon_PhnN phosph 95.9 0.0066 1.4E-07 51.8 3.2 23 154-176 2-24 (179)
343 PF13086 AAA_11: AAA domain; P 95.9 0.02 4.4E-07 50.6 6.4 53 155-207 19-75 (236)
344 KOG0927 Predicted transporter 95.9 0.36 7.8E-06 47.6 15.0 173 65-243 317-536 (614)
345 cd00227 CPT Chloramphenicol (C 95.9 0.0068 1.5E-07 51.7 3.1 23 154-176 3-25 (175)
346 cd02021 GntK Gluconate kinase 95.9 0.006 1.3E-07 50.4 2.7 22 155-176 1-22 (150)
347 PRK07594 type III secretion sy 95.9 0.048 1E-06 53.0 9.1 87 152-243 154-254 (433)
348 PF02562 PhoH: PhoH-like prote 95.9 0.011 2.3E-07 51.6 4.2 50 139-191 7-56 (205)
349 cd03228 ABCC_MRP_Like The MRP 95.8 0.051 1.1E-06 46.0 8.4 24 153-176 28-51 (171)
350 PRK06936 type III secretion sy 95.8 0.05 1.1E-06 52.9 9.2 87 152-243 161-261 (439)
351 PF07088 GvpD: GvpD gas vesicl 95.8 0.036 7.9E-07 52.3 7.8 41 147-191 4-44 (484)
352 cd02020 CMPK Cytidine monophos 95.8 0.0061 1.3E-07 50.0 2.5 22 155-176 1-22 (147)
353 TIGR02655 circ_KaiC circadian 95.8 0.04 8.6E-07 54.9 8.7 41 152-194 20-60 (484)
354 PRK05439 pantothenate kinase; 95.8 0.067 1.4E-06 49.8 9.4 26 151-176 84-109 (311)
355 cd02024 NRK1 Nicotinamide ribo 95.8 0.0066 1.4E-07 52.2 2.6 22 155-176 1-22 (187)
356 PRK10416 signal recognition pa 95.8 0.15 3.2E-06 47.8 11.8 26 152-177 113-138 (318)
357 COG3854 SpoIIIAA ncharacterize 95.8 0.035 7.6E-07 48.6 6.9 42 144-185 128-169 (308)
358 PF13245 AAA_19: Part of AAA d 95.8 0.03 6.6E-07 40.5 5.7 25 152-176 9-33 (76)
359 PRK13947 shikimate kinase; Pro 95.8 0.0078 1.7E-07 50.9 3.0 22 155-176 3-24 (171)
360 PRK08927 fliI flagellum-specif 95.8 0.078 1.7E-06 51.6 10.1 87 152-243 157-257 (442)
361 PF03308 ArgK: ArgK protein; 95.7 0.021 4.6E-07 51.1 5.7 59 142-201 16-76 (266)
362 TIGR00390 hslU ATP-dependent p 95.7 0.027 5.8E-07 54.2 6.8 24 153-176 47-70 (441)
363 TIGR03263 guanyl_kin guanylate 95.7 0.0083 1.8E-07 51.2 3.1 23 154-176 2-24 (180)
364 PRK09302 circadian clock prote 95.7 0.041 8.8E-07 55.3 8.4 50 152-205 30-79 (509)
365 TIGR00073 hypB hydrogenase acc 95.7 0.01 2.2E-07 52.1 3.6 30 147-176 16-45 (207)
366 COG1066 Sms Predicted ATP-depe 95.7 0.028 6.2E-07 53.3 6.7 84 153-243 93-177 (456)
367 TIGR03880 KaiC_arch_3 KaiC dom 95.7 0.061 1.3E-06 47.7 8.7 47 153-204 16-62 (224)
368 PF13479 AAA_24: AAA domain 95.7 0.04 8.7E-07 48.5 7.5 20 154-173 4-23 (213)
369 PRK12597 F0F1 ATP synthase sub 95.7 0.051 1.1E-06 53.3 8.7 90 152-243 142-246 (461)
370 PRK05922 type III secretion sy 95.7 0.047 1E-06 53.0 8.4 87 152-243 156-256 (434)
371 PRK13949 shikimate kinase; Pro 95.7 0.009 1.9E-07 50.6 3.1 23 154-176 2-24 (169)
372 PRK00279 adk adenylate kinase; 95.7 0.019 4.2E-07 50.6 5.3 22 155-176 2-23 (215)
373 TIGR03305 alt_F1F0_F1_bet alte 95.7 0.035 7.5E-07 54.1 7.4 89 153-243 138-241 (449)
374 PF03193 DUF258: Protein of un 95.7 0.019 4.2E-07 47.9 4.9 35 139-176 24-58 (161)
375 TIGR00150 HI0065_YjeE ATPase, 95.7 0.019 4E-07 46.4 4.6 25 153-177 22-46 (133)
376 TIGR00416 sms DNA repair prote 95.7 0.089 1.9E-06 51.9 10.3 81 153-243 94-179 (454)
377 PRK10820 DNA-binding transcrip 95.7 0.26 5.6E-06 49.6 13.9 44 133-176 205-250 (520)
378 TIGR00764 lon_rel lon-related 95.7 0.043 9.3E-07 56.1 8.3 74 133-211 19-92 (608)
379 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.047 1E-06 45.4 7.3 82 154-243 26-107 (157)
380 COG0465 HflB ATP-dependent Zn 95.7 0.17 3.8E-06 50.9 12.3 39 138-176 159-206 (596)
381 PRK09302 circadian clock prote 95.7 0.073 1.6E-06 53.5 9.9 85 153-243 273-372 (509)
382 PF08477 Miro: Miro-like prote 95.6 0.011 2.3E-07 46.6 3.2 21 156-176 2-22 (119)
383 cd02028 UMPK_like Uridine mono 95.6 0.0087 1.9E-07 51.2 2.8 23 155-177 1-23 (179)
384 KOG1970 Checkpoint RAD17-RFC c 95.6 0.17 3.6E-06 49.9 11.7 25 152-176 109-133 (634)
385 COG1428 Deoxynucleoside kinase 95.6 0.0091 2E-07 51.6 2.8 24 153-176 4-27 (216)
386 cd01878 HflX HflX subfamily. 95.6 0.037 8E-07 48.2 6.8 26 151-176 39-64 (204)
387 KOG1532 GTPase XAB1, interacts 95.6 0.011 2.5E-07 52.8 3.5 25 152-176 18-42 (366)
388 PRK14530 adenylate kinase; Pro 95.6 0.0093 2E-07 52.7 3.0 23 154-176 4-26 (215)
389 PRK11823 DNA repair protein Ra 95.6 0.076 1.7E-06 52.3 9.6 81 153-243 80-165 (446)
390 cd03223 ABCD_peroxisomal_ALDP 95.6 0.086 1.9E-06 44.4 8.8 85 153-243 27-118 (166)
391 TIGR03575 selen_PSTK_euk L-ser 95.6 0.049 1.1E-06 51.3 7.9 22 156-177 2-23 (340)
392 cd01136 ATPase_flagellum-secre 95.6 0.06 1.3E-06 50.4 8.3 86 153-243 69-168 (326)
393 COG0572 Udk Uridine kinase [Nu 95.6 0.012 2.6E-07 51.4 3.4 26 152-177 7-32 (218)
394 PRK10463 hydrogenase nickel in 95.6 0.029 6.2E-07 51.5 6.0 33 144-176 95-127 (290)
395 PF00625 Guanylate_kin: Guanyl 95.6 0.017 3.6E-07 49.6 4.3 36 153-191 2-37 (183)
396 PRK10751 molybdopterin-guanine 95.5 0.013 2.9E-07 49.6 3.5 26 152-177 5-30 (173)
397 COG1124 DppF ABC-type dipeptid 95.5 0.017 3.7E-07 51.0 4.3 24 153-176 33-56 (252)
398 PRK12339 2-phosphoglycerate ki 95.5 0.012 2.6E-07 51.2 3.3 24 153-176 3-26 (197)
399 KOG0736 Peroxisome assembly fa 95.5 0.16 3.5E-06 52.0 11.4 156 135-303 404-597 (953)
400 cd00464 SK Shikimate kinase (S 95.5 0.011 2.3E-07 49.0 2.8 21 156-176 2-22 (154)
401 cd00071 GMPK Guanosine monopho 95.5 0.012 2.6E-07 48.0 3.0 22 155-176 1-22 (137)
402 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.066 1.4E-06 44.0 7.5 24 153-176 26-49 (144)
403 PTZ00185 ATPase alpha subunit; 95.5 0.1 2.2E-06 51.5 9.7 90 153-243 189-298 (574)
404 cd01134 V_A-ATPase_A V/A-type 95.5 0.035 7.7E-07 52.1 6.4 48 153-205 157-205 (369)
405 TIGR01313 therm_gnt_kin carboh 95.5 0.0089 1.9E-07 50.2 2.3 21 156-176 1-21 (163)
406 TIGR03600 phage_DnaB phage rep 95.5 2.8 6E-05 41.1 20.9 53 153-209 194-246 (421)
407 PRK00300 gmk guanylate kinase; 95.5 0.012 2.5E-07 51.5 3.1 24 153-176 5-28 (205)
408 TIGR01650 PD_CobS cobaltochela 95.5 0.05 1.1E-06 50.8 7.4 42 133-176 46-87 (327)
409 PF02374 ArsA_ATPase: Anion-tr 95.5 0.019 4.2E-07 53.5 4.7 24 154-177 2-25 (305)
410 TIGR01420 pilT_fam pilus retra 95.5 0.038 8.2E-07 52.5 6.8 84 152-243 121-204 (343)
411 PRK10078 ribose 1,5-bisphospho 95.5 0.012 2.6E-07 50.7 3.1 23 154-176 3-25 (186)
412 PF03029 ATP_bind_1: Conserved 95.5 0.016 3.4E-07 52.0 4.0 20 158-177 1-20 (238)
413 PRK09280 F0F1 ATP synthase sub 95.5 0.086 1.9E-06 51.6 9.2 90 152-243 143-247 (463)
414 COG0003 ArsA Predicted ATPase 95.4 0.024 5.3E-07 52.9 5.2 24 153-176 2-25 (322)
415 PF05659 RPW8: Arabidopsis bro 95.4 0.096 2.1E-06 43.1 8.1 106 3-115 6-115 (147)
416 COG2019 AdkA Archaeal adenylat 95.4 0.013 2.9E-07 48.6 3.0 24 153-176 4-27 (189)
417 KOG0651 26S proteasome regulat 95.4 0.055 1.2E-06 49.5 7.1 24 153-176 166-189 (388)
418 cd01672 TMPK Thymidine monopho 95.4 0.032 6.8E-07 48.2 5.6 23 155-177 2-24 (200)
419 PRK13975 thymidylate kinase; P 95.4 0.013 2.8E-07 50.8 3.1 24 154-177 3-26 (196)
420 PF03266 NTPase_1: NTPase; In 95.4 0.012 2.7E-07 49.7 2.9 22 156-177 2-23 (168)
421 PRK05201 hslU ATP-dependent pr 95.4 0.041 8.8E-07 53.0 6.6 44 133-176 16-73 (443)
422 TIGR03496 FliI_clade1 flagella 95.4 0.058 1.3E-06 52.3 7.8 87 152-243 136-236 (411)
423 TIGR01039 atpD ATP synthase, F 95.4 0.1 2.2E-06 51.0 9.3 90 152-243 142-246 (461)
424 PF03969 AFG1_ATPase: AFG1-lik 95.4 0.044 9.6E-07 52.2 6.8 26 152-177 61-86 (362)
425 PRK13948 shikimate kinase; Pro 95.4 0.016 3.6E-07 49.6 3.6 25 152-176 9-33 (182)
426 TIGR01069 mutS2 MutS2 family p 95.4 0.073 1.6E-06 55.9 9.0 25 152-176 321-345 (771)
427 PRK05057 aroK shikimate kinase 95.3 0.014 3.1E-07 49.5 3.2 23 154-176 5-27 (172)
428 PLN02924 thymidylate kinase 95.3 0.089 1.9E-06 46.6 8.2 53 153-207 16-68 (220)
429 TIGR01287 nifH nitrogenase iro 95.3 0.016 3.5E-07 53.2 3.6 24 154-177 1-24 (275)
430 PRK00409 recombination and DNA 95.3 0.14 3.1E-06 54.0 10.9 24 152-175 326-349 (782)
431 TIGR00665 DnaB replicative DNA 95.3 0.85 1.8E-05 44.8 16.0 53 153-209 195-247 (434)
432 cd01125 repA Hexameric Replica 95.3 0.098 2.1E-06 46.9 8.6 22 155-176 3-24 (239)
433 TIGR00455 apsK adenylylsulfate 95.3 0.052 1.1E-06 46.6 6.5 26 151-176 16-41 (184)
434 PRK14526 adenylate kinase; Pro 95.3 0.027 5.9E-07 49.5 4.8 21 156-176 3-23 (211)
435 PRK09099 type III secretion sy 95.3 0.068 1.5E-06 52.2 7.9 88 152-243 162-262 (441)
436 cd01129 PulE-GspE PulE/GspE Th 95.3 0.05 1.1E-06 49.6 6.7 36 140-176 68-103 (264)
437 PRK14737 gmk guanylate kinase; 95.3 0.017 3.7E-07 49.7 3.4 25 152-176 3-27 (186)
438 PRK13946 shikimate kinase; Pro 95.3 0.016 3.5E-07 49.8 3.2 24 153-176 10-33 (184)
439 PRK05688 fliI flagellum-specif 95.2 0.14 2.9E-06 50.1 9.8 86 153-243 168-267 (451)
440 PLN02796 D-glycerate 3-kinase 95.2 0.096 2.1E-06 49.3 8.4 25 152-176 99-123 (347)
441 PRK07196 fliI flagellum-specif 95.2 0.08 1.7E-06 51.5 8.1 25 152-176 154-178 (434)
442 PRK06731 flhF flagellar biosyn 95.2 0.12 2.5E-06 47.3 8.7 88 152-243 74-163 (270)
443 PRK06793 fliI flagellum-specif 95.2 0.1 2.2E-06 50.8 8.8 88 152-243 155-255 (432)
444 cd03213 ABCG_EPDR ABCG transpo 95.2 0.16 3.4E-06 44.0 9.3 24 153-176 35-58 (194)
445 KOG3347 Predicted nucleotide k 95.2 0.014 3E-07 47.5 2.4 69 153-232 7-75 (176)
446 PRK04182 cytidylate kinase; Pr 95.2 0.017 3.6E-07 49.1 3.1 22 155-176 2-23 (180)
447 PF11868 DUF3388: Protein of u 95.2 0.11 2.4E-06 42.7 7.4 43 143-195 44-88 (192)
448 TIGR01040 V-ATPase_V1_B V-type 95.2 0.073 1.6E-06 51.8 7.6 91 152-243 140-256 (466)
449 PRK07721 fliI flagellum-specif 95.1 0.055 1.2E-06 52.9 6.8 89 151-243 156-257 (438)
450 PRK09435 membrane ATPase/prote 95.1 0.2 4.2E-06 47.2 10.3 36 142-177 43-80 (332)
451 PRK11388 DNA-binding transcrip 95.1 0.59 1.3E-05 48.4 14.8 43 134-176 327-371 (638)
452 PRK06820 type III secretion sy 95.1 0.12 2.5E-06 50.5 9.0 86 153-243 163-262 (440)
453 cd02117 NifH_like This family 95.1 0.017 3.8E-07 50.8 3.1 25 154-178 1-25 (212)
454 COG2274 SunT ABC-type bacterio 95.1 0.21 4.6E-06 51.9 11.4 25 152-176 498-522 (709)
455 cd02040 NifH NifH gene encodes 95.1 0.03 6.5E-07 51.1 4.8 24 154-177 2-25 (270)
456 PLN02200 adenylate kinase fami 95.1 0.019 4E-07 51.4 3.3 24 153-176 43-66 (234)
457 PF13521 AAA_28: AAA domain; P 95.1 0.015 3.3E-07 48.8 2.6 21 156-176 2-22 (163)
458 COG0714 MoxR-like ATPases [Gen 95.1 0.053 1.2E-06 51.2 6.5 61 134-202 26-86 (329)
459 PF00005 ABC_tran: ABC transpo 95.1 0.02 4.3E-07 46.4 3.1 23 154-176 12-34 (137)
460 COG0237 CoaE Dephospho-CoA kin 95.1 0.02 4.4E-07 49.8 3.3 23 153-175 2-24 (201)
461 PRK13768 GTPase; Provisional 95.1 0.03 6.4E-07 50.8 4.5 25 153-177 2-26 (253)
462 TIGR01041 ATP_syn_B_arch ATP s 95.1 0.087 1.9E-06 51.7 8.0 90 153-243 141-247 (458)
463 cd00820 PEPCK_HprK Phosphoenol 95.1 0.021 4.6E-07 44.1 3.0 22 153-174 15-36 (107)
464 TIGR02546 III_secr_ATP type II 95.1 0.17 3.7E-06 49.3 10.0 87 152-243 144-244 (422)
465 COG1116 TauB ABC-type nitrate/ 95.1 0.019 4.1E-07 50.9 3.1 24 153-176 29-52 (248)
466 PRK13236 nitrogenase reductase 95.0 0.028 6.2E-07 52.2 4.4 29 150-178 3-31 (296)
467 PRK14738 gmk guanylate kinase; 95.0 0.023 4.9E-07 49.9 3.5 25 152-176 12-36 (206)
468 PRK06761 hypothetical protein; 95.0 0.041 8.8E-07 50.4 5.2 24 154-177 4-27 (282)
469 PRK14532 adenylate kinase; Pro 95.0 0.018 3.9E-07 49.5 2.8 21 156-176 3-23 (188)
470 TIGR02173 cyt_kin_arch cytidyl 95.0 0.02 4.4E-07 48.2 3.1 22 155-176 2-23 (171)
471 COG4133 CcmA ABC-type transpor 95.0 0.34 7.5E-06 41.3 10.2 23 154-176 29-51 (209)
472 cd01428 ADK Adenylate kinase ( 95.0 0.018 4E-07 49.6 2.8 21 156-176 2-22 (194)
473 TIGR03497 FliI_clade2 flagella 95.0 0.14 3.1E-06 49.7 9.1 87 152-243 136-236 (413)
474 PRK03731 aroL shikimate kinase 95.0 0.02 4.3E-07 48.5 2.9 23 154-176 3-25 (171)
475 PRK13230 nitrogenase reductase 94.9 0.021 4.4E-07 52.6 3.2 24 154-177 2-25 (279)
476 PF07693 KAP_NTPase: KAP famil 94.9 0.098 2.1E-06 49.1 7.9 39 139-177 3-44 (325)
477 PF01926 MMR_HSR1: 50S ribosom 94.9 0.026 5.6E-07 44.3 3.4 21 156-176 2-22 (116)
478 COG0194 Gmk Guanylate kinase [ 94.9 0.024 5.1E-07 48.1 3.2 24 153-176 4-27 (191)
479 PRK09825 idnK D-gluconate kina 94.9 0.023 4.9E-07 48.5 3.2 23 154-176 4-26 (176)
480 COG1100 GTPase SAR1 and relate 94.9 0.02 4.2E-07 50.4 2.9 23 154-176 6-28 (219)
481 PRK13407 bchI magnesium chelat 94.9 0.039 8.4E-07 52.0 5.0 47 131-177 7-53 (334)
482 COG4148 ModC ABC-type molybdat 94.9 0.1 2.2E-06 47.2 7.2 26 151-176 22-47 (352)
483 TIGR02030 BchI-ChlI magnesium 94.9 0.049 1.1E-06 51.4 5.6 44 133-176 5-48 (337)
484 TIGR02868 CydC thiol reductant 94.9 0.23 5E-06 50.2 10.9 25 152-176 360-384 (529)
485 PRK15424 propionate catabolism 94.9 0.27 5.9E-06 49.5 11.1 43 134-176 221-265 (538)
486 TIGR03574 selen_PSTK L-seryl-t 94.9 0.018 3.9E-07 52.1 2.6 23 155-177 1-23 (249)
487 PRK15453 phosphoribulokinase; 94.9 0.027 5.9E-07 51.3 3.6 26 151-176 3-28 (290)
488 PF03215 Rad17: Rad17 cell cyc 94.9 0.044 9.6E-07 54.7 5.5 39 138-176 25-68 (519)
489 COG0703 AroK Shikimate kinase 94.8 0.025 5.5E-07 47.5 3.1 23 154-176 3-25 (172)
490 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.04 8.7E-07 48.2 4.5 24 153-176 29-52 (204)
491 TIGR00708 cobA cob(I)alamin ad 94.8 0.19 4.2E-06 42.4 8.5 23 154-176 6-28 (173)
492 CHL00081 chlI Mg-protoporyphyr 94.8 0.047 1E-06 51.6 5.3 45 133-177 18-62 (350)
493 PF06414 Zeta_toxin: Zeta toxi 94.8 0.072 1.6E-06 46.3 6.2 88 150-243 12-101 (199)
494 PF13604 AAA_30: AAA domain; P 94.8 0.043 9.3E-07 47.7 4.7 33 145-177 10-42 (196)
495 PLN02165 adenylate isopentenyl 94.8 0.026 5.7E-07 52.7 3.4 28 149-176 39-66 (334)
496 TIGR00176 mobB molybdopterin-g 94.8 0.023 5E-07 47.4 2.7 23 155-177 1-23 (155)
497 COG1120 FepC ABC-type cobalami 94.8 0.025 5.4E-07 51.0 3.1 24 153-176 28-51 (258)
498 PF12061 DUF3542: Protein of u 94.8 0.062 1.3E-06 49.0 5.5 77 10-93 301-377 (402)
499 cd02022 DPCK Dephospho-coenzym 94.8 0.022 4.9E-07 48.7 2.7 21 155-175 1-21 (179)
500 PRK13343 F0F1 ATP synthase sub 94.8 0.12 2.5E-06 51.3 7.9 86 153-243 162-263 (502)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-54 Score=443.34 Aligned_cols=362 Identities=32% Similarity=0.510 Sum_probs=298.7
Q ss_pred HhhhhhhhhhhcccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 045887 11 FKCVCPPVCKYVQDHRKLDENMKNLERVLQEFNSQKEDIEATLKAEGDRGKKPRTEVKNWLQNLQRINSKAQSIEQEVKK 90 (382)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~~~ae~~~~~~~~~~v~~Wl~~l~~~~y~~ed~~d~~~~ 90 (382)
++++...+...+....+.++.+..|++.|..|+++++| ++.++. ....+..|...+++++|++|++++.+..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d------~~a~~~--~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALED------LDAKRD--DLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH------HHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888999999999999999999999999 444333 3567899999999999999999887642
Q ss_pred cC-------c--------------ccc-------ccchHHHHHHHHHHHHHHhcCCCCcccc-ccc-----ccccccc--
Q 045887 91 RK-------Y--------------FLC-------ARLGKDVDAKIQEMKDCHQKGCSFISLW-IDI-----VNNNTSR-- 134 (382)
Q Consensus 91 ~~-------~--------------~~~-------~~~~~~i~~~~~~l~~~~~~~~~~~~~~-~~~-----~~~~~~~-- 134 (382)
.. . ..+ +++.+++-.+++.++.+..++.+..... ..+ ..+....
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 10 0 011 1456677777777776665543322211 000 0011112
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 045887 135 RNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT 214 (382)
Q Consensus 135 ~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 214 (382)
+|.+..++++++.|.+++..+++|+||||+||||||+.++|++..+.++|+.++||.||+.++...++.+|+..++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 89999999999999998889999999999999999999999954489999999999999999999999999999987433
Q ss_pred C--CchHHHHHHHHHHHHhCCCeEEEEEEcC----------------CCC-eEEEecc-------ccCc-eeeecCCCCh
Q 045887 215 K--DEDKVRRARRLLGKLKVKKKFVLILDYI----------------DNH-MFCWGLR-------SMGC-EEVIVPPLSK 267 (382)
Q Consensus 215 ~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------~~g-~iivTtR-------~~~~-~~~~l~~L~~ 267 (382)
. ..+..+.+..+.+.|.+ +||||||||| .+| +|++||| .++. ..+++.+|++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred ccchhhHHHHHHHHHHHhcc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 2 23346889999999998 9999999999 467 9999999 2554 6789999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChhHHHHHHHHHhhc-cccCCCChHhHHH
Q 045887 268 EEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGL-VRSFSGINADVLG 346 (382)
Q Consensus 268 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~~~~ 346 (382)
+|||+||++.+|......++.++++|++++++|+|+|||++++|+.|+++.+..+|+++++.+... ..+.++..+.+++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 999999999999886656667999999999999999999999999999999999999999998866 3445556789999
Q ss_pred HHHHhHhhCCCCCchhHhhhcccCCCCcccccCcCC
Q 045887 347 RLEFSYRRLKNKKVQHCFLYCALYPEDFAISKDELI 382 (382)
Q Consensus 347 ~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Lv 382 (382)
+|.+||+.| |+++|.||+|||+||+||.|+++.||
T Consensus 400 iLklSyd~L-~~~lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 400 ILKLSYDNL-PEELKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred hhhccHhhh-hHHHHHHHHhhccCCcccccchHHHH
Confidence 999999999 79999999999999999999999885
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.8e-43 Score=327.87 Aligned_cols=243 Identities=32% Similarity=0.552 Sum_probs=204.8
Q ss_pred hHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 045887 137 TKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT 214 (382)
Q Consensus 137 r~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 214 (382)
|+.++++|.+.|.+ ++.++|+|+||||+||||||..++++ .....+|+.++|++++...+...++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~-~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD-LRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH-HHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc-ccccccccccccccccccccccccccccccccccccc
Confidence 68999999999988 78999999999999999999999998 5588999999999999998899999999999988643
Q ss_pred ---CCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------CCC-eEEEeccc------cC--ceeeecCCCC
Q 045887 215 ---KDEDKVRRARRLLGKLKVKKKFVLILDYI----------------DNH-MFCWGLRS------MG--CEEVIVPPLS 266 (382)
Q Consensus 215 ---~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------~~g-~iivTtR~------~~--~~~~~l~~L~ 266 (382)
...+.......+.+.|.+ +++||||||| ..| +||||||. .+ ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhcc-ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 346677799999999999 8999999999 346 99999991 11 3578999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChhHHHHHHHHHhhccccCCCChHhHHH
Q 045887 267 KEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRSFSGINADVLG 346 (382)
Q Consensus 267 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~ 346 (382)
.++|++||.+.++......++.+++.+++|+++|+|+|||++++|++|+.+.+..+|..+++++.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999887653345566788999999999999999999999976567899999999988665444445689999
Q ss_pred HHHHhHhhCCCCCchhHhhhcccCCCCcccccCcCC
Q 045887 347 RLEFSYRRLKNKKVQHCFLYCALYPEDFAISKDELI 382 (382)
Q Consensus 347 ~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Lv 382 (382)
++.+||+.| |+++|+||+|||+||+++.|+++.||
T Consensus 239 ~l~~s~~~L-~~~~~~~f~~L~~f~~~~~i~~~~li 273 (287)
T PF00931_consen 239 ALELSYDSL-PDELRRCFLYLSIFPEGVPIPRERLI 273 (287)
T ss_dssp HHHHHHHSS-HTCCHHHHHHGGGSGTTS-EEHHHHH
T ss_pred cceechhcC-CccHHHHHhhCcCCCCCceECHHHHH
Confidence 999999999 88999999999999999999988764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6e-34 Score=307.05 Aligned_cols=282 Identities=20% Similarity=0.250 Sum_probs=206.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHhcCCCCccccccccccccccCchHHHHHH
Q 045887 64 RTEVKNWLQNLQRINSKAQSIEQEVKKRKYFLCARLGKDVDAKIQEMKDCHQKGCSFISLWIDIVNNNTSRRNTKKIVKK 143 (382)
Q Consensus 64 ~~~v~~Wl~~l~~~~y~~ed~~d~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~ 143 (382)
.+.++.|.+.|.+++.-..-... . .-.-++-|+++.+.+.+.... .++.....++|++..+++
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~-----~---~~~E~~~i~~Iv~~v~~~l~~---------~~~~~~~~~vG~~~~l~~ 195 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQ-----N---WPNEAKMIEEIANDVLGKLNL---------TPSNDFEDFVGIEDHIAK 195 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecC-----C---CCCHHHHHHHHHHHHHHhhcc---------ccCcccccccchHHHHHH
Confidence 45799999999988764321110 0 001233344444444333321 122234568999999999
Q ss_pred HHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe---CCC-----------CC-HHHHHHHHH
Q 045887 144 VWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV---SQP-----------LD-LVKLQAEIA 206 (382)
Q Consensus 144 l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~ 206 (382)
+..++. .+++++|+|+||||+||||||+.+|+. ....|++.+|+.. +.. .+ ...++.+++
T Consensus 196 l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~---l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l 272 (1153)
T PLN03210 196 MSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR---LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFL 272 (1153)
T ss_pred HHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH---HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHH
Confidence 998875 457899999999999999999999998 6778988887742 111 01 123444555
Q ss_pred HHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------CCC-eEEEecc------ccCc-eeeec
Q 045887 207 TALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------DNH-MFCWGLR------SMGC-EEVIV 262 (382)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------~~g-~iivTtR------~~~~-~~~~l 262 (382)
..+......... ....+.+.+.+ +|+||||||| ++| +|||||| ..++ ..|++
T Consensus 273 ~~il~~~~~~~~---~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 273 SEILDKKDIKIY---HLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred HHHhCCCCcccC---CHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 544222111000 11356677888 9999999999 468 9999999 2334 67899
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChhHHHHHHHHHhhccccCCCChH
Q 045887 263 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRSFSGINA 342 (382)
Q Consensus 263 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~ 342 (382)
+.|+.++||+||++.||+... ++..+.+++++|+++|+|+|||++++|++|++ ++..+|+.+++++... .+.
T Consensus 349 ~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~------~~~ 420 (1153)
T PLN03210 349 CLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNG------LDG 420 (1153)
T ss_pred cCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhC------ccH
Confidence 999999999999999998654 45568899999999999999999999999998 6889999999998742 346
Q ss_pred hHHHHHHHhHhhCCCCCchhHhhhcccCCCCcccc
Q 045887 343 DVLGRLEFSYRRLKNKKVQHCFLYCALYPEDFAIS 377 (382)
Q Consensus 343 ~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~ 377 (382)
.+..+|++||+.|+++..|.||+++|+||.++.++
T Consensus 421 ~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 421 KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 89999999999994446899999999999987664
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=4.8e-12 Score=135.41 Aligned_cols=217 Identities=12% Similarity=0.192 Sum_probs=142.5
Q ss_pred ccccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAT 207 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~ 207 (382)
+.....+-|...++.|-+ ....+++.|+|++|.||||++..+.+. . +.++|+++.. ..++..+...++.
T Consensus 11 ~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~---~----~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG---K----NNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh---C----CCeEEEecCcccCCHHHHHHHHHH
Confidence 334456667666555532 235789999999999999999998765 1 2589999864 4466667777777
Q ss_pred HhCCCCCC-------------CchHHHHHHHHHHHHhC-CCeEEEEEEcC-------------------CCC-eEEEecc
Q 045887 208 ALKLSPTK-------------DEDKVRRARRLLGKLKV-KKKFVLILDYI-------------------DNH-MFCWGLR 253 (382)
Q Consensus 208 ~l~~~~~~-------------~~~~~~~~~~l~~~l~~-~kr~LlVlDdv-------------------~~g-~iivTtR 253 (382)
.++...+. ..+.......+...+.. +.+++|||||+ .++ +++||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 76421111 02223344455555543 48999999999 345 8889999
Q ss_pred c---cC-------ceeeecC----CCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCC
Q 045887 254 S---MG-------CEEVIVP----PLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDE 319 (382)
Q Consensus 254 ~---~~-------~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~ 319 (382)
. .+ ....++. +|+.+|+.+||....+.. -..+.+.+|.+.|+|+|+++..++..+.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 2 11 1223455 999999999998764332 12466788999999999999999877755321
Q ss_pred hhHHHHHHHHHhhccccCCC-ChHhHHHHHHH-hHhhCCCCCchhHhhhcccCC
Q 045887 320 IHEWRNALNELRGLVRSFSG-INADVLGRLEF-SYRRLKNKKVQHCFLYCALYP 371 (382)
Q Consensus 320 ~~~w~~~l~~l~~~~~~~~~-~~~~~~~~l~~-sy~~L~~~~~k~cf~~~s~fp 371 (382)
. ....... ... ....+...+.- .++.| |++.+..+...|+++
T Consensus 235 ~--~~~~~~~-------~~~~~~~~~~~~l~~~v~~~l-~~~~~~~l~~~a~~~ 278 (903)
T PRK04841 235 S--LHDSARR-------LAGINASHLSDYLVEEVLDNV-DLETRHFLLRCSVLR 278 (903)
T ss_pred c--hhhhhHh-------hcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcccc
Confidence 1 0111111 111 12345554433 47899 999999999999998
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.38 E-value=4.5e-12 Score=113.35 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=96.6
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH--------
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI-------- 205 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-------- 205 (382)
|+||+++++.|.+++..+..+.+.|+|+.|+|||+|++.+.+. ....-...+|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~---~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINE---LKEKGYKVVYIDFLEESNES-SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHH---CT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHH---hhhcCCcEEEEecccchhhh-HHHHHHHHHHHHH
Confidence 6899999999999998877889999999999999999999988 22211134555544433221 22222
Q ss_pred --HHHh----CCCC------CCCchHHHHHHHHHHHHhC-CCeEEEEEEcC--------------------------CCC
Q 045887 206 --ATAL----KLSP------TKDEDKVRRARRLLGKLKV-KKKFVLILDYI--------------------------DNH 246 (382)
Q Consensus 206 --~~~l----~~~~------~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv--------------------------~~g 246 (382)
...+ .... ............+.+.+.. +++++||+|++ ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1112 1100 1112334445555555544 34599999998 223
Q ss_pred -eE-EEecc-----c---------cCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 247 -MF-CWGLR-----S---------MGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 247 -~i-ivTtR-----~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
.+ +++|. . .....+.+++|+.+++++++...+-.. ... +...+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 34 44443 1 112458999999999999999865333 212 22356679999999999998864
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.35 E-value=3.5e-10 Score=109.66 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=127.9
Q ss_pred cccccCchHHHHHHHHHHhc----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLM----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
.+..+.||++++++|...+. +...+.+.|+|++|+|||++++.+++.+.. ....-..+++++....+...++..|
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHHHH
Confidence 34568999999999988873 334567889999999999999999998322 2212336677777777888999999
Q ss_pred HHHhCC-CCC-CCchHHHHHHHHHHHHhC-CCeEEEEEEcC---------------------CCC---eEEEecc-----
Q 045887 206 ATALKL-SPT-KDEDKVRRARRLLGKLKV-KKKFVLILDYI---------------------DNH---MFCWGLR----- 253 (382)
Q Consensus 206 ~~~l~~-~~~-~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv---------------------~~g---~iivTtR----- 253 (382)
++++.. ..+ ...+..+....+.+.+.. ++..+||||++ .++ .+|.++.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 999875 222 233456667777777764 35689999999 122 2455544
Q ss_pred ---------ccCceeeecCCCChHHHHHHHHHhhcCC--CCCCCCchHHHHHHHHHH----cCCchhHHHHHHhhh----
Q 045887 254 ---------SMGCEEVIVPPLSKEEALNLFLDKVGRN--ILHVPTLNEEIINSVVEE----CAGLQLAIFTVVGCM---- 314 (382)
Q Consensus 254 ---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~~~i~~~----c~glPLal~~~~~~L---- 314 (382)
..+...+.+++++.++..+++...+... ....+ .+..+.|++. .|..+.|+.++-...
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~---~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD---DEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC---HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 1122467999999999999998876321 11112 2333444444 456777777664321
Q ss_pred -cC--CCChhHHHHHHHHH
Q 045887 315 -RG--VDEIHEWRNALNEL 330 (382)
Q Consensus 315 -~~--~~~~~~w~~~l~~l 330 (382)
++ .-+.+....+++..
T Consensus 264 ~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH
Confidence 11 13456666666554
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=4.9e-10 Score=102.76 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=105.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHH---
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLL--- 227 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--- 227 (382)
....++.|+|++|+|||||++.+++.+. ...+ ..+|+ +....+..+++..|+..++.+... .+.......+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~--~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD--QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 3456899999999999999999998831 1111 12233 233456778899999988775432 22233333333
Q ss_pred -HHHhCCCeEEEEEEcC-------------------CCC---eEEEecc-----cc---C--------ceeeecCCCChH
Q 045887 228 -GKLKVKKKFVLILDYI-------------------DNH---MFCWGLR-----SM---G--------CEEVIVPPLSKE 268 (382)
Q Consensus 228 -~~l~~~kr~LlVlDdv-------------------~~g---~iivTtR-----~~---~--------~~~~~l~~L~~~ 268 (382)
.....+++++||+||+ ..+ .|++|.. .. . ...+++++|+.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 3333348899999998 112 3455554 00 0 235689999999
Q ss_pred HHHHHHHHhhcCCCCCCC-CchHHHHHHHHHHcCCchhHHHHHHhhh
Q 045887 269 EALNLFLDKVGRNILHVP-TLNEEIINSVVEECAGLQLAIFTVVGCM 314 (382)
Q Consensus 269 ea~~Lf~~~a~~~~~~~~-~~~~~~~~~i~~~c~glPLal~~~~~~L 314 (382)
|..+++...+...+.... .-..+..+.|++.|+|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999877643221111 2235788999999999999999988765
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=8.3e-10 Score=105.89 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=118.1
Q ss_pred ccccCchHHHHHHHHHHhcC----CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCC---CceEEEEeCCCCCHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLMG----DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEF---SDVIWVTVSQPLDLVKLQA 203 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~----~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 203 (382)
+..++||++++++|...+.. ...+.+.|+|++|+|||++++.+++.+....... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 34689999999999888753 3456899999999999999999998742221111 1356888777777888999
Q ss_pred HHHHHh---CCCCC-CCchHHHHHHHHHHHHhC-CCeEEEEEEcC----------------C--------CC-eEEEecc
Q 045887 204 EIATAL---KLSPT-KDEDKVRRARRLLGKLKV-KKKFVLILDYI----------------D--------NH-MFCWGLR 253 (382)
Q Consensus 204 ~i~~~l---~~~~~-~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv----------------~--------~g-~iivTtR 253 (382)
.|+.++ +...+ ...+..+....+.+.+.. +++++||||++ . .. .+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999998 33322 223445556666666642 36899999999 0 22 3444443
Q ss_pred --------------ccCceeeecCCCChHHHHHHHHHhhcC--CCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 254 --------------SMGCEEVIVPPLSKEEALNLFLDKVGR--NILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 254 --------------~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
......+.+++++.++..+++..++.. .....+++..+.+..++..+.|.|-.+
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 111245789999999999999888631 111123333344555677777888443
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.18 E-value=2.1e-09 Score=107.99 Aligned_cols=217 Identities=16% Similarity=0.208 Sum_probs=147.3
Q ss_pred ccccCchHHHHHHHHHHhcCC-CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLMGD-KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATA 208 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~-~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 208 (382)
..+.+-|.. |++.|.+. +.+.+.|..++|.|||||+..++.. . ..-..+.|.++++ +.++..++..++..
T Consensus 18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~---~-~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWREL---A-ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh---c-CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 344555554 44455544 7899999999999999999999764 1 2233589999876 45688899999888
Q ss_pred hCCCCCCC-------------chHHHHHHHHHHHHhC-CCeEEEEEEcC-------------------CCC-eEEEecc-
Q 045887 209 LKLSPTKD-------------EDKVRRARRLLGKLKV-KKKFVLILDYI-------------------DNH-MFCWGLR- 253 (382)
Q Consensus 209 l~~~~~~~-------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv-------------------~~g-~iivTtR- 253 (382)
++...+.. .+.......+...+.. .++..+||||. .++ .+++|||
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 87533322 2334455666665544 47899999999 567 9999999
Q ss_pred --ccCc-------eeeecC----CCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCCh
Q 045887 254 --SMGC-------EEVIVP----PLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEI 320 (382)
Q Consensus 254 --~~~~-------~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~ 320 (382)
..+. ..++++ .|+.+|+-++|...... +-.+..++.+.+..+|.+-|+..++=.++++.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 1111 122333 68999999999886322 2234667889999999999999998888854554
Q ss_pred hHHHHHHHHHhhccccCCCChHhHHH-HHHHhHhhCCCCCchhHhhhcccCCC
Q 045887 321 HEWRNALNELRGLVRSFSGINADVLG-RLEFSYRRLKNKKVQHCFLYCALYPE 372 (382)
Q Consensus 321 ~~w~~~l~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~~k~cf~~~s~fp~ 372 (382)
+.-...++ +....+.. ...--++.| |+++|..++.||+++.
T Consensus 244 ~q~~~~Ls----------G~~~~l~dYL~eeVld~L-p~~l~~FLl~~svl~~ 285 (894)
T COG2909 244 EQSLRGLS----------GAASHLSDYLVEEVLDRL-PPELRDFLLQTSVLSR 285 (894)
T ss_pred HHHhhhcc----------chHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHHH
Confidence 43322222 11122221 223346788 9999999999998864
No 10
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=6.6e-10 Score=93.82 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCC---CCceEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCchHHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNE---FSDVIWVTVSQPLDLV---KLQAEIATALKLSPTKDEDKVRRARRLL 227 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 227 (382)
+++.|+|.+|+||||+++.++..+...... +...+|++.+...... .+...|......... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 578999999999999999999884322111 3456677765543322 344444443332211 1111 233
Q ss_pred HHHhCCCeEEEEEEcC---------------------------CCC-eEEEeccc---------cC-ceeeecCCCChHH
Q 045887 228 GKLKVKKKFVLILDYI---------------------------DNH-MFCWGLRS---------MG-CEEVIVPPLSKEE 269 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv---------------------------~~g-~iivTtR~---------~~-~~~~~l~~L~~~e 269 (382)
..+...++++||+|++ .++ +++||||. .. ...+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 3333459999999998 346 99999991 11 2467999999999
Q ss_pred HHHHHHHh
Q 045887 270 ALNLFLDK 277 (382)
Q Consensus 270 a~~Lf~~~ 277 (382)
..+++.+.
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999876
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=3.9e-09 Score=99.62 Aligned_cols=171 Identities=12% Similarity=0.027 Sum_probs=105.8
Q ss_pred cccccCchHHHHHHHHHHhc-----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLM-----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 204 (382)
....++|+++.++.+...+. ....+.+.++|++|+|||+||+.+++. ....+ .++..+. ......+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~---l~~~~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE---MGVNI---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH---hCCCe---EEEeccc-ccChHHHHH
Confidence 44558999999988876664 234567899999999999999999998 22221 2222221 122233444
Q ss_pred HHHHhCCCCC------CCchHHHHHHHHHHHHhCCCeEEEEEEcC---------CCC--eEEEecc--cc-------Cce
Q 045887 205 IATALKLSPT------KDEDKVRRARRLLGKLKVKKKFVLILDYI---------DNH--MFCWGLR--SM-------GCE 258 (382)
Q Consensus 205 i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------~~g--~iivTtR--~~-------~~~ 258 (382)
++..+....- +..+ ......+...+.+ .+..+++|+. -++ -|..|++ .. ...
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMED-FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHh-cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 4544432110 0111 1122334555565 6777888874 123 4455655 11 124
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 259 EVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 259 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
.+++++++.++..+++.+.+...+... .++.+..|++.|+|.|-.+..+..
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHH
Confidence 579999999999999998876543322 246788999999999975555444
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=4.8e-09 Score=98.07 Aligned_cols=168 Identities=11% Similarity=0.026 Sum_probs=103.6
Q ss_pred ccCchHHHHHHHHHHhc-----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 133 SRRNTKKIVKKVWEDLM-----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
.|+|++..++.|..++. ......+.++|++|+|||+||+.+++. ....+ ..+..+...... .+...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~---~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE---MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH---hCCCE---EEeccchhcCch-hHHHHHH
Confidence 47899999999888775 234567889999999999999999988 22222 122222111222 2223333
Q ss_pred HhCCCCC------CCchHHHHHHHHHHHHhCCCeEEEEEEcC----------CCC-eEEEeccc--------c-Cceeee
Q 045887 208 ALKLSPT------KDEDKVRRARRLLGKLKVKKKFVLILDYI----------DNH-MFCWGLRS--------M-GCEEVI 261 (382)
Q Consensus 208 ~l~~~~~------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------~~g-~iivTtR~--------~-~~~~~~ 261 (382)
.++...- +..+ ......+...+.+ .+..+|+|+. .+. -|..||+. . ....++
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMED-FRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhh-hheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 3332110 1111 1223445666666 6777888865 223 44556661 1 124568
Q ss_pred cCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 262 VPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 262 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
+++++.++..+++.+.+..... .-.++....|++.|+|.|-.+..++.
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 9999999999999988754322 12246678899999999976655544
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.93 E-value=8.1e-08 Score=93.51 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=97.1
Q ss_pred cccCchHHHHHH---HHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 132 TSRRNTKKIVKK---VWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 132 ~~~~gr~~~~~~---l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
..++|.+..+.. |..++.++..+.+.++|++|+||||||+.+++. .... |+.++.......-++.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~---~~~~-----~~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA---TDAP-----FEALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH---hCCC-----EEEEecccccHHHHHHHH--
Confidence 347777777655 777777777788899999999999999999887 3332 233222111111112222
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---------------CCC-eEEE--ecc----------ccCceee
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI---------------DNH-MFCW--GLR----------SMGCEEV 260 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------------~~g-~iiv--TtR----------~~~~~~~ 260 (382)
.........+++.+|++|++ ..| .+++ ||. ...+..+
T Consensus 82 ---------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 82 ---------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred ---------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceee
Confidence 12221222237889999998 345 4444 233 1224678
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
.+.+++.++...++.+.+.........-..+....|++.|+|.|..+..+..
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999988653311111122356678899999999987655443
No 14
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=5.4e-09 Score=97.53 Aligned_cols=214 Identities=21% Similarity=0.244 Sum_probs=151.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCC-CceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEF-SDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
.+.+.++|.|||||||++-.+.. ....| +.+.++......+...+.-.....++.......+ ....+.....
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~----~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~---~~~~~~~~~~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH----AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDS---AVDTLVRRIG 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh----HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchH---HHHHHHHHHh
Confidence 48899999999999999999977 23455 4566777776667777777777777776543222 2334455566
Q ss_pred CCCeEEEEEEcC-----------------CCC-eEEEecc----ccCceeeecCCCChH-HHHHHHHHhhcCCCC--CCC
Q 045887 232 VKKKFVLILDYI-----------------DNH-MFCWGLR----SMGCEEVIVPPLSKE-EALNLFLDKVGRNIL--HVP 286 (382)
Q Consensus 232 ~~kr~LlVlDdv-----------------~~g-~iivTtR----~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~--~~~ 286 (382)
. +|.++|+||. .+. .++.|+| ..+.....+++|+.. ++.++|...+..... ...
T Consensus 87 ~-rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 87 D-RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred h-hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 6 8999999998 344 8899999 223356688888876 788998877643211 123
Q ss_pred CchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChhHHHHHHHHHhhccccC----CCChHhHHHHHHHhHhhCCCCCchh
Q 045887 287 TLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRSF----SGINADVLGRLEFSYRRLKNKKVQH 362 (382)
Q Consensus 287 ~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~ 362 (382)
........+|+++.+|.|++|..+++..++ ....+...-++.--..+..- ........+.+.+||.-| ....+-
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lL-tgwe~~ 243 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALL-TGWERA 243 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhh-hhHHHH
Confidence 334567889999999999999999999887 66555555444322111111 112457889999999999 888889
Q ss_pred HhhhcccCCCCccc
Q 045887 363 CFLYCALYPEDFAI 376 (382)
Q Consensus 363 cf~~~s~fp~~~~i 376 (382)
.|.-++.|...|.-
T Consensus 244 ~~~rLa~~~g~f~~ 257 (414)
T COG3903 244 LFGRLAVFVGGFDL 257 (414)
T ss_pred Hhcchhhhhhhhcc
Confidence 99999999888754
No 15
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.6e-07 Score=86.83 Aligned_cols=176 Identities=19% Similarity=0.312 Sum_probs=123.1
Q ss_pred ccCchHHHHHHHHHHhc----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 133 SRRNTKKIVKKVWEDLM----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
...+|+.+++++...|. +..+.-+.|+|.+|+|||+.++.+++.+.......+ .++|++....+..+++..|+++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHH
Confidence 37789999999987764 334455999999999999999999998533333333 7899999999999999999999
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhC-CCeEEEEEEcC-------------------CCC-eE--EEecc------------
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKV-KKKFVLILDYI-------------------DNH-MF--CWGLR------------ 253 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv-------------------~~g-~i--ivTtR------------ 253 (382)
++..+....+..+....+.+.+.. ++.+++|||++ ... +| +..+-
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 986555556667777777777765 58899999999 112 22 22222
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhc---CCCCCCCCchHHHHHHHHHHcC-CchhHHHHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVG---RNILHVPTLNEEIINSVVEECA-GLQLAIFTV 310 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~c~-glPLal~~~ 310 (382)
..+...+..+|-+.+|-.+.+..++- ..+. .+...-+.+..++..-+ -.=.|+..+
T Consensus 177 ~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 177 KSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 33445578999999999999988873 3333 34444444444444444 344455444
No 16
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.84 E-value=1.8e-07 Score=83.43 Aligned_cols=144 Identities=15% Similarity=0.247 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 045887 137 TKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKD 216 (382)
Q Consensus 137 r~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 216 (382)
.+..++.+..++.......+.|+|.+|+|||+||+.+++.. .......+|++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHH------hH-----------
Confidence 45577777777666667899999999999999999999883 22233456666443211 00
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEEEcC---------------------CCC-eEEEeccc---------------c-Cce
Q 045887 217 EDKVRRARRLLGKLKVKKKFVLILDYI---------------------DNH-MFCWGLRS---------------M-GCE 258 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g-~iivTtR~---------------~-~~~ 258 (382)
..+...+. +.-+||+||+ ..+ .+|+||+. . ...
T Consensus 82 -------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~ 152 (226)
T TIGR03420 82 -------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152 (226)
T ss_pred -------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe
Confidence 01111222 2237778877 234 78888770 0 124
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 259 EVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 259 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
.+++++++.++...++...+-.... .-.++....|++.++|.|..+..+..
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 6789999999989988775432221 11235567777788888877765543
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=1.4e-07 Score=84.37 Aligned_cols=128 Identities=13% Similarity=0.234 Sum_probs=80.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
..+.+.++|++|+|||+|++.+++.+ ......+.|+++.... ..... +.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~~~~---~~~~~---------------------~~~~~~ 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLSKSQ---YFSPA---------------------VLENLE 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHHHhh---hhhHH---------------------HHhhcc
Confidence 34678999999999999999999983 2223346777653210 00011 111121
Q ss_pred CCCeEEEEEEcC---------------------CCC-eE-EEecc---------------cc-CceeeecCCCChHHHHH
Q 045887 232 VKKKFVLILDYI---------------------DNH-MF-CWGLR---------------SM-GCEEVIVPPLSKEEALN 272 (382)
Q Consensus 232 ~~kr~LlVlDdv---------------------~~g-~i-ivTtR---------------~~-~~~~~~l~~L~~~ea~~ 272 (382)
+.-+|++||+ ..| .+ ++|+. .. ....+++++++.++.++
T Consensus 91 --~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 91 --QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred --cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 2347777877 234 44 44554 11 12467899999999999
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 273 LFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 273 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
++.+.+...+...+ ++...-|++.+.|..-.+..+-
T Consensus 169 iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 169 VLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 99998865433222 4667778888887766554443
No 18
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.82 E-value=5.1e-07 Score=84.13 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=88.7
Q ss_pred HHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHH
Q 045887 144 VWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRA 223 (382)
Q Consensus 144 l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 223 (382)
|-..+..+.+.-..+||++|+||||||+.++.. ....| ..++...+-. .+..+..
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~---~~~~f-----~~~sAv~~gv-----------------kdlr~i~ 93 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT---TNAAF-----EALSAVTSGV-----------------KDLREII 93 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh---hCCce-----EEeccccccH-----------------HHHHHHH
Confidence 344556678888999999999999999999887 44443 3333322211 1222233
Q ss_pred HHHHHHHhCCCeEEEEEEcC---------------CCC-eEEE--ecc----------ccCceeeecCCCChHHHHHHHH
Q 045887 224 RRLLGKLKVKKKFVLILDYI---------------DNH-MFCW--GLR----------SMGCEEVIVPPLSKEEALNLFL 275 (382)
Q Consensus 224 ~~l~~~l~~~kr~LlVlDdv---------------~~g-~iiv--TtR----------~~~~~~~~l~~L~~~ea~~Lf~ 275 (382)
+...+....+++.+|++|.| .+| -|+| ||- ...+..+++++|+.++-..++.
T Consensus 94 e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 94 EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK 173 (436)
T ss_pred HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHH
Confidence 33333333248999999999 567 5555 333 2345678999999999999998
Q ss_pred HhhcCCCCC---CCCch-HHHHHHHHHHcCCchhHH
Q 045887 276 DKVGRNILH---VPTLN-EEIINSVVEECAGLQLAI 307 (382)
Q Consensus 276 ~~a~~~~~~---~~~~~-~~~~~~i~~~c~glPLal 307 (382)
+.+...... ....+ ++...-++..++|---++
T Consensus 174 ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 174 RALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 844322111 11112 446677889998876543
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.80 E-value=2.9e-07 Score=93.77 Aligned_cols=180 Identities=15% Similarity=0.107 Sum_probs=111.9
Q ss_pred cCchHHHHHHHHHHhcC----C-CceEEEEEeCCCCcHHHHHHHHHhchhccc--CCCC--ceEEEEeCCCCCHHHHHHH
Q 045887 134 RRNTKKIVKKVWEDLMG----D-KVTKIGVWGMGGIGKTAIMRHINNRPQEET--NEFS--DVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~----~-~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~--~~~wv~~~~~~~~~~~~~~ 204 (382)
..+|++++++|...|.. . ...++.|+|++|+|||++++.|.+.+.... ...+ .+++|++....+...++..
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 67999999999877742 2 235778999999999999999988753221 1222 2578887776788889999
Q ss_pred HHHHhCCCCC-CCchHHHHHHHHHHHHhC--CCeEEEEEEcC-------------------CCC-eEEE--ecc------
Q 045887 205 IATALKLSPT-KDEDKVRRARRLLGKLKV--KKKFVLILDYI-------------------DNH-MFCW--GLR------ 253 (382)
Q Consensus 205 i~~~l~~~~~-~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv-------------------~~g-~iiv--TtR------ 253 (382)
|.++|....+ ...+.......+...+.. ....+||||++ ..+ +|++ +|.
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPE 916 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcch
Confidence 9998854332 233444555666665532 23469999999 223 4433 332
Q ss_pred --------ccCceeeecCCCChHHHHHHHHHhhcCCCCC-CCCchHHHHHHHHHHcCCchhHHHHHHhh
Q 045887 254 --------SMGCEEVIVPPLSKEEALNLFLDKVGRNILH-VPTLNEEIINSVVEECAGLQLAIFTVVGC 313 (382)
Q Consensus 254 --------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~~i~~~c~glPLal~~~~~~ 313 (382)
.++...+..+|++.++-.+++..++...... .+..++-+|+.++...|-.=.||.++-..
T Consensus 917 rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 917 RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 2222346789999999999999887532111 12222223333333334444555555433
No 20
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.78 E-value=1.7e-08 Score=81.82 Aligned_cols=91 Identities=21% Similarity=0.307 Sum_probs=68.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhccc--CCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEET--NEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
-+.+.|+|.+|+|||+++..+.+.+.... ..-..++|+++....+...+...|+..++.......+..+....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999988732110 1133467999888779999999999999987765566777778888888
Q ss_pred hCCCeEEEEEEcC
Q 045887 231 KVKKKFVLILDYI 243 (382)
Q Consensus 231 ~~~kr~LlVlDdv 243 (382)
...+..+||+|++
T Consensus 84 ~~~~~~~lviDe~ 96 (131)
T PF13401_consen 84 DRRRVVLLVIDEA 96 (131)
T ss_dssp HHCTEEEEEEETT
T ss_pred HhcCCeEEEEeCh
Confidence 8745679999997
No 21
>PRK08727 hypothetical protein; Validated
Probab=98.77 E-value=3e-07 Score=82.39 Aligned_cols=147 Identities=13% Similarity=0.174 Sum_probs=91.2
Q ss_pred ccccccCch-HHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 129 NNNTSRRNT-KKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 129 ~~~~~~~gr-~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
....+|++. .+.+..+.....+.....+.|+|.+|+|||+|++.+++.. ......+.|+++.+ ....+.
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~---~~~~~~~~y~~~~~------~~~~~~- 85 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA---EQAGRSSAYLPLQA------AAGRLR- 85 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEeHHH------hhhhHH-
Confidence 344445543 3344444444333444679999999999999999998883 22223456776432 111110
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---------------------CCC-eEEEecc------------
Q 045887 208 ALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI---------------------DNH-MFCWGLR------------ 253 (382)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g-~iivTtR------------ 253 (382)
...+.+. +.-+||+||+ .+| .||+||+
T Consensus 86 -----------------~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 86 -----------------DALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred -----------------HHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 1112222 3458888888 346 7999998
Q ss_pred ---cc-CceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 254 ---SM-GCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 254 ---~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
.+ .+..+++++++.++-.+++.+.+...+... .++...-|++.|+|-.-.+
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 11 134679999999999999998765432212 2466777888888766554
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=1.4e-06 Score=88.13 Aligned_cols=170 Identities=14% Similarity=0.202 Sum_probs=99.0
Q ss_pred ccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
......+|.+..++.|.+++..+++ +.+.++|..|+||||+|+.+++.+. ....++. ..+..-..+..|..
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~-------~PCG~C~sCr~I~~ 84 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS-------QPCGVCRACREIDE 84 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC-------CCCcccHHHHHHhc
Confidence 3344578889999999999987764 5668999999999999999988731 1111110 01111111111111
Q ss_pred H-----hCCCCCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEEEecc------
Q 045887 208 A-----LKLSPTKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFCWGLR------ 253 (382)
Q Consensus 208 ~-----l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~iivTtR------ 253 (382)
. +..........++ +..+.+... .++.-++|||++ ... ++|++|.
T Consensus 85 G~h~DviEIDAas~rgVDd-IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDE-MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred CCCceEEEecccccccHHH-HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 0 0000000011111 111222211 125558889999 234 7777776
Q ss_pred ---ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHH
Q 045887 254 ---SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTV 310 (382)
Q Consensus 254 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~ 310 (382)
...|..|.+.+++.++..+.+.+.+...+.. -..+....|++.++|.. -|+..+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3446788999999999999998876543321 12466788999998865 455543
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.71 E-value=7.4e-07 Score=84.47 Aligned_cols=174 Identities=12% Similarity=0.141 Sum_probs=101.6
Q ss_pred cccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHH--
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIA-- 206 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~-- 206 (382)
....++|++..++.|..++.++..+.+.++|++|+||||+|+.+++.+ ....+. ..++++++...+ .....+.
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 88 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL--YGDPWENNFTEFNVADFFD--QGKKYLVED 88 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh--cCcccccceEEechhhhhh--cchhhhhcC
Confidence 334578899999999999888777778999999999999999998873 122222 234555432110 0000000
Q ss_pred ----HHhCCCCCCCchHHHHHHHHHHHHhC-----CCeEEEEEEcC------------------CCC-eEEEecc-----
Q 045887 207 ----TALKLSPTKDEDKVRRARRLLGKLKV-----KKKFVLILDYI------------------DNH-MFCWGLR----- 253 (382)
Q Consensus 207 ----~~l~~~~~~~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv------------------~~g-~iivTtR----- 253 (382)
..++.......+..+....+.+.... ..+-+||+||+ .+. ++|+||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 00000000001111222222222111 14458999998 234 6777764
Q ss_pred ----ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 254 ----SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 254 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
...+..+++.+++.++...++...+...+.. -..+....+++.++|.+-.+...
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223567899999999999988875443321 22467788999998877655443
No 24
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.66 E-value=9.8e-07 Score=79.16 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCch
Q 045887 139 KIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDED 218 (382)
Q Consensus 139 ~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 218 (382)
..+..+..+....+.+.+.|+|++|+|||+|++.+++.. ...-..+.|+++..... .
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~~~~~v~y~~~~~~~~---~----------------- 87 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL---SQRGRAVGYVPLDKRAW---F----------------- 87 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEEHHHHhh---h-----------------
Confidence 344555555545556789999999999999999999873 22223456766533110 0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEcC---------------------CCC--eEEEecc---------------ccC-cee
Q 045887 219 KVRRARRLLGKLKVKKKFVLILDYI---------------------DNH--MFCWGLR---------------SMG-CEE 259 (382)
Q Consensus 219 ~~~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g--~iivTtR---------------~~~-~~~ 259 (382)
...+.+.+. +--+|++||+ ..| ++|+||+ ... ...
T Consensus 88 ----~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~ 161 (235)
T PRK08084 88 ----VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred ----hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCce
Confidence 001112221 1236777887 233 6888887 111 246
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 260 VIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 260 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
+++++++.++-.+++.+.+...+.. -.++...-|++.+.|..-++..+
T Consensus 162 ~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 7999999999999988766443221 22466777888887765554433
No 25
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.65 E-value=7.1e-08 Score=86.76 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=61.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC--CCHHHHHHHHHH-----HhCCCCCCCc-hHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP--LDLVKLQAEIAT-----ALKLSPTKDE-DKVRRA 223 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~-----~l~~~~~~~~-~~~~~~ 223 (382)
.-..++|+|.+|+|||||++.+++.. . ..+|+..+|+.+... .++.++++.+.. .++.+..... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999983 2 238999999997766 789999999833 3332111000 111222
Q ss_pred HHHHHHHhCCCeEEEEEEcC
Q 045887 224 RRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 224 ~~l~~~l~~~kr~LlVlDdv 243 (382)
.........+++.++++|++
T Consensus 93 ~~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHHCCCCEEEEEECH
Confidence 22333223359999999998
No 26
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.64 E-value=1e-07 Score=82.00 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=32.0
Q ss_pred cCchHHHHHHHHHHhc---CCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 134 RRNTKKIVKKVWEDLM---GDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~---~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
|+||++++++|...+. +...+.+.|+|.+|+|||+|.+.++..+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999983 3457899999999999999999998884
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.60 E-value=7.6e-07 Score=77.53 Aligned_cols=175 Identities=15% Similarity=0.110 Sum_probs=87.5
Q ss_pred cccccCchHHHHHHHHHHhc-----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLM-----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 204 (382)
....|+|-+..++.+.-.+. ++...-+.+||++|+||||||.-+++. ....|. +++...-....+ +..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e---~~~~~~---~~sg~~i~k~~d-l~~ 94 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE---LGVNFK---ITSGPAIEKAGD-LAA 94 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH---CT--EE---EEECCC--SCHH-HHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc---cCCCeE---eccchhhhhHHH-HHH
Confidence 44558898877776543332 345678999999999999999999998 444442 333221111122 223
Q ss_pred HHHHhCCCCC----C-CchHHHHHHHHHHHHhCCCeEEEEEEcC---------CCC--eEEEecc------ccC--ce-e
Q 045887 205 IATALKLSPT----K-DEDKVRRARRLLGKLKVKKKFVLILDYI---------DNH--MFCWGLR------SMG--CE-E 259 (382)
Q Consensus 205 i~~~l~~~~~----~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------~~g--~iivTtR------~~~--~~-~ 259 (382)
++..+....- + ..=.....+.|...+.+ .+.-||+.-= -+. -|=.||| ... .. .
T Consensus 95 il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd-~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~ 173 (233)
T PF05496_consen 95 ILTNLKEGDILFIDEIHRLNKAQQEILLPAMED-GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIV 173 (233)
T ss_dssp HHHT--TT-EEEECTCCC--HHHHHHHHHHHHC-SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEE
T ss_pred HHHhcCCCcEEEEechhhccHHHHHHHHHHhcc-CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhccee
Confidence 3333321100 0 00012223334444444 4443343321 122 4556777 111 12 3
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhc
Q 045887 260 VIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMR 315 (382)
Q Consensus 260 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~ 315 (382)
.+++..+.+|-..+..+.+..-+. .-.++.+.+|++.|.|-|--+.-+-..++
T Consensus 174 ~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 174 LRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred cchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 489999999999999877644322 22357889999999999976655444433
No 28
>PRK05642 DNA replication initiation factor; Validated
Probab=98.59 E-value=3.5e-06 Score=75.54 Aligned_cols=126 Identities=18% Similarity=0.279 Sum_probs=78.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
...+.|+|..|+|||.|++.+++.+ ...-..++|++..+ +... ...+.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~---~~~~~~v~y~~~~~------~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF---EQRGEPAVYLPLAE------LLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH---HhCCCcEEEeeHHH------HHhh------------------hHHHHHhhhh
Confidence 3678999999999999999998873 22223467776432 1110 0122333332
Q ss_pred CCeEEEEEEcC---------------------CCC-eEEEecc---------------cc-CceeeecCCCChHHHHHHH
Q 045887 233 KKKFVLILDYI---------------------DNH-MFCWGLR---------------SM-GCEEVIVPPLSKEEALNLF 274 (382)
Q Consensus 233 ~kr~LlVlDdv---------------------~~g-~iivTtR---------------~~-~~~~~~l~~L~~~ea~~Lf 274 (382)
- =+||+||+ .+| .+|+||+ .. ....+++++++.++-..++
T Consensus 98 -~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 98 -Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred -C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 2 25677888 456 8888887 11 1245789999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 275 LDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
..++...+...+ ++...-|++.+.|..-.+..+
T Consensus 176 ~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 176 QLRASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 866544322122 466677777777665544433
No 29
>PLN03025 replication factor C subunit; Provisional
Probab=98.58 E-value=2.3e-06 Score=80.44 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=96.1
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHHhC
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
..++|.+..++.|..++.+++.+-+.++|++|+||||+|..+++.+ ....|. .++-++.+...+.. ..+.+++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l--~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL--LGPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH--hcccCccceeeecccccccHH-HHHHHHHHHH
Confidence 3466777788888888877777778899999999999999999883 122332 12222333322222 2222222211
Q ss_pred CCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceeeec
Q 045887 211 LSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEVIV 262 (382)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~~l 262 (382)
.... .+..++.-++|+|++ .+. ++++++. ...+..+++
T Consensus 90 ~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 90 QKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred hccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 1000 001125668899988 234 6666664 123457899
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 263 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 263 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
++++.++....+...+-..+...+ .+....|++.++|-.-.+
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 999999999998887654432222 456788999998877443
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.9e-06 Score=88.83 Aligned_cols=157 Identities=14% Similarity=0.182 Sum_probs=96.2
Q ss_pred cccccCchHHHHHHHHHHhcCCCce-EEEEEeCCCCcHHHHHHHHHhchhcccCC-------------------CCceEE
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVT-KIGVWGMGGIGKTAIMRHINNRPQEETNE-------------------FSDVIW 189 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~gGvGKTtLa~~v~~~~~~~~~~-------------------f~~~~w 189 (382)
....++|-+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++.+.- ... |..+++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 3445778888888898888877664 5689999999999999999988411 111 111112
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------------C-CC-eEEE
Q 045887 190 VTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------------D-NH-MFCW 250 (382)
Q Consensus 190 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------------~-~g-~iiv 250 (382)
++......+.. ++.|.. .+...-..+++-++|+|++ . .. ++|+
T Consensus 93 idAas~~kVDd-IReLie-----------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 93 VDAASRTKVDD-TRELLD-----------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred eccccccCHHH-HHHHHH-----------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 21111111111 122221 1111111136779999999 2 23 5555
Q ss_pred ecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 251 GLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 251 TtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
+|. ...|..|++.+|+.++....+.+.+-..+. .-..+....|++.++|.|--+.
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 554 234678899999999999999887543221 1224567889999999885433
No 31
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=5.6e-06 Score=79.24 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=93.5
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|-+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++.+. ...... ..++..-.....+.+.
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcC
Confidence 334467888888888888877654 5779999999999999999988731 111110 0000000011111111
Q ss_pred hCCC----CCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEEEecc--------
Q 045887 209 LKLS----PTKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFCWGLR-------- 253 (382)
Q Consensus 209 l~~~----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~iivTtR-------- 253 (382)
.... ........+....+.+.+. .+++-++|+|++ .+. .+|++|.
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0000 0000000111222222221 124568889988 233 5666555
Q ss_pred -ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 254 -SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 254 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
...+..+++.+++.++..+.+...+...+. .-.++.+..|+..++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 122467899999999999888876543321 112456778999999988643
No 32
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.8e-06 Score=86.25 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=97.2
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|-+..++.|.+.+.++.+ +.+.++|..|+||||+|+.+++.+ ....-+..--+. +..+..-..+..|...
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL--nC~~p~~~~g~~-~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL--NCTGADGEGGIT-AQPCGQCRACTEIDAG 90 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCccccccCC-CCCCcccHHHHHHHcC
Confidence 344467888888999999987765 567899999999999999998874 110000000000 0001111111111110
Q ss_pred -----hCCCCCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEEE-ecc------
Q 045887 209 -----LKLSPTKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFCW-GLR------ 253 (382)
Q Consensus 209 -----l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~iiv-TtR------ 253 (382)
+..........++ +..+.+.+. .++.-++|+|++ ..+ .+|+ ||.
T Consensus 91 ~hpDviEIdAas~~gVDd-IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDE-MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCcceEecccccCCHHH-HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0000000011111 122222211 236668999999 233 5444 444
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
...|..+.+..++.++..+.+.+.+...+.. ...+....|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3446788999999999999888776433221 12345678999999999654433
No 33
>PRK09087 hypothetical protein; Validated
Probab=98.56 E-value=2.3e-06 Score=76.19 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=75.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
..+.+.|+|.+|+|||+|++.+++. . ...|++.. .+...+... +.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~---~-----~~~~i~~~------~~~~~~~~~---------------------~~ 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK---S-----DALLIHPN------EIGSDAANA---------------------AA 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh---c-----CCEEecHH------HcchHHHHh---------------------hh
Confidence 3467999999999999999998876 2 12244321 111111111 11
Q ss_pred CCCeEEEEEEcC------------------CCC-eEEEecc----------------ccCceeeecCCCChHHHHHHHHH
Q 045887 232 VKKKFVLILDYI------------------DNH-MFCWGLR----------------SMGCEEVIVPPLSKEEALNLFLD 276 (382)
Q Consensus 232 ~~kr~LlVlDdv------------------~~g-~iivTtR----------------~~~~~~~~l~~L~~~ea~~Lf~~ 276 (382)
.-+|++||+ ..| .+++|++ ...+..+++++++.++-.+++.+
T Consensus 88 ---~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 ---EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred ---cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 114555655 346 7888876 11225679999999999999998
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 277 KVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
.+-..+... -++...-|++.+.|..-++..+
T Consensus 165 ~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 165 LFADRQLYV---DPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHcCCCC---CHHHHHHHHHHhhhhHHHHHHH
Confidence 875433222 2567788889888887776643
No 34
>PTZ00202 tuzin; Provisional
Probab=98.55 E-value=2e-06 Score=81.71 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=90.0
Q ss_pred cccccccccCchHHHHHHHHHHhcCC---CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHH
Q 045887 126 DIVNNNTSRRNTKKIVKKVWEDLMGD---KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQ 202 (382)
Q Consensus 126 ~~~~~~~~~~gr~~~~~~l~~~l~~~---~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 202 (382)
..|+....|+||+.++..|...|.+. ..+++.|.|++|+|||||++.+.... . +. .++++.. +..+++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~~-qL~vNpr---g~eElL 326 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----MP-AVFVDVR---GTEDTL 326 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----ce-EEEECCC---CHHHHH
Confidence 34556667999999999999888642 34699999999999999999998772 1 11 3333333 679999
Q ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHHH----hC-CCeEEEEEEc-----C------------CCC--eEEEecc-----
Q 045887 203 AEIATALKLSPTKDEDKVRRARRLLGKL----KV-KKKFVLILDY-----I------------DNH--MFCWGLR----- 253 (382)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~-~kr~LlVlDd-----v------------~~g--~iivTtR----- 253 (382)
..|+.+||.+... ...++...+.+.+ .. +++.+||+-= + +.. +|++.--
T Consensus 327 r~LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 327 RSVVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 9999999974332 2223333333332 22 4666666541 1 222 3433322
Q ss_pred -----ccCceeeecCCCChHHHHHHHHHh
Q 045887 254 -----SMGCEEVIVPPLSKEEALNLFLDK 277 (382)
Q Consensus 254 -----~~~~~~~~l~~L~~~ea~~Lf~~~ 277 (382)
...-.-|-+++++.++|...-.+.
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 111145678999999988765543
No 35
>PRK04195 replication factor C large subunit; Provisional
Probab=98.55 E-value=5.7e-06 Score=82.23 Aligned_cols=158 Identities=13% Similarity=0.186 Sum_probs=100.1
Q ss_pred cccCchHHHHHHHHHHhcC----CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 132 TSRRNTKKIVKKVWEDLMG----DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~----~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
...+|.+..++.|.+|+.. ...+.+.|+|++|+||||+|+.+++.+ .|+ .+-++.+...+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHHHH
Confidence 3467888888888888753 226889999999999999999999983 232 3444554433222 2333332
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC--------------------CCC-eEEEecc----------ccC
Q 045887 208 ALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI--------------------DNH-MFCWGLR----------SMG 256 (382)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--------------------~~g-~iivTtR----------~~~ 256 (382)
....... .... ++-+||+|++ ..+ .||+|+. ...
T Consensus 87 ~~~~~~s--------------l~~~-~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 87 EAATSGS--------------LFGA-RRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred HhhccCc--------------ccCC-CCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhcc
Confidence 2211100 0012 5778889888 123 5666664 123
Q ss_pred ceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhh
Q 045887 257 CEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 314 (382)
Q Consensus 257 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L 314 (382)
+..+++++++.++....+.+.+...+...+ .+....|++.++|-.-.+......+
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 467899999999999988887654433222 4677889999998776654433333
No 36
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.55 E-value=3.5e-06 Score=79.13 Aligned_cols=155 Identities=11% Similarity=0.129 Sum_probs=94.4
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe--CCCCCHHHHHHHHHHHh
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV--SQPLDLVKLQAEIATAL 209 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l 209 (382)
..++|++..++.+..++..+..+.+.++|.+|+||||+|+.+++.+ ....+. ..++.+ +...... .....+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l--~~~~~~-~~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL--YGEDWR-ENFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH--cCCccc-cceEEeccccccchH-HHHHHHHHH
Confidence 3477889999999999988777778999999999999999998873 122222 122332 2222211 111111111
Q ss_pred CCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceeee
Q 045887 210 KLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEVI 261 (382)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~~ 261 (382)
....+ .....+-++++|++ .+. .+|+++. ...+..++
T Consensus 93 ~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 93 ARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 11000 00013456777766 223 5565553 11234679
Q ss_pred cCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 262 VPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 262 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
+.+++.++....+...+...+... .++....+++.++|.+--+.
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 999999999888888765433212 24577889999999886543
No 37
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.52 E-value=1.8e-06 Score=79.30 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=90.2
Q ss_pred HHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHH
Q 045887 144 VWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRA 223 (382)
Q Consensus 144 l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 223 (382)
|.+.+.++..+.+.+||++|+||||||+.+.+. .+.+ ...||..|....-..-++.|.++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~t---sk~~--SyrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIAST---SKKH--SYRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhh---cCCC--ceEEEEEeccccchHHHHHHHHHHHH------------
Confidence 345556778899999999999999999999887 2222 15678877654444444444432211
Q ss_pred HHHHHHHhCCCeEEEEEEcC---------------CCC-eEEE--ecc----------ccCceeeecCCCChHHHHHHHH
Q 045887 224 RRLLGKLKVKKKFVLILDYI---------------DNH-MFCW--GLR----------SMGCEEVIVPPLSKEEALNLFL 275 (382)
Q Consensus 224 ~~l~~~l~~~kr~LlVlDdv---------------~~g-~iiv--TtR----------~~~~~~~~l~~L~~~ea~~Lf~ 275 (382)
...+.+ +|.+|.+|.| .+| -++| ||. ...|..+.|++|+.++-..++.
T Consensus 216 ---~~~l~k-rkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 216 ---EKSLTK-RKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred ---HHhhhc-ceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 122344 8999999999 567 4444 444 2346778999999999998887
Q ss_pred Hhhc--CC-CC---CCCC----chHHHHHHHHHHcCCchh
Q 045887 276 DKVG--RN-IL---HVPT----LNEEIINSVVEECAGLQL 305 (382)
Q Consensus 276 ~~a~--~~-~~---~~~~----~~~~~~~~i~~~c~glPL 305 (382)
+... ++ .. ..+. -...+.+-++..|.|-.-
T Consensus 292 raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 292 RAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7321 11 11 1111 123455667777887653
No 38
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=4e-06 Score=84.04 Aligned_cols=167 Identities=14% Similarity=0.210 Sum_probs=97.0
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|.+...+.|.+++.++.. +.+.++|+.|+||||+|+.+++.+. ...... . ..++.-..++.+...
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~------~-~pCg~C~sC~~I~~g 84 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVT------S-TPCEVCATCKAVNEG 84 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCC------C-CCCccCHHHHHHhcC
Confidence 344478888899999999887764 6789999999999999999988731 111010 0 001111111111110
Q ss_pred hCC-----CCCCCchHHHHHHHHHHHH----hCCCeEEEEEEcC------------------CCC-eEEEecc-------
Q 045887 209 LKL-----SPTKDEDKVRRARRLLGKL----KVKKKFVLILDYI------------------DNH-MFCWGLR------- 253 (382)
Q Consensus 209 l~~-----~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv------------------~~g-~iivTtR------- 253 (382)
-.. ........+ .++.+.... ..++.-++|+|++ .++ .+|++|.
T Consensus 85 ~hpDviEIDAAs~~~Vd-dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 85 RFIDLIEIDAASRTKVE-DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCceEEecccccCCHH-HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000 000001111 111222211 1126668999999 234 6776665
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
...|..+++.+++.++....+.+.+...+.. -..+....|++.++|.+-.+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2345678999999999999888876543321 224566789999999775443
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.7e-06 Score=84.02 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=96.9
Q ss_pred ccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
......+|-+..+..|..++.++.+ +.+.++|+.|+||||+|+.+++.+ ........ ..+....+ ...+..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L--nce~~~~~--~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL--NCENPIGN--EPCNECTS----CLEITK 86 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc--CcccccCc--cccCCCcH----HHHHHc
Confidence 3344477878888889888888775 468999999999999999999883 11111100 00111111 112221
Q ss_pred HhCCC-----CCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC-----------------CCC--eEEEec-c-----
Q 045887 208 ALKLS-----PTKDEDKVRRARRLLGKLK----VKKKFVLILDYI-----------------DNH--MFCWGL-R----- 253 (382)
Q Consensus 208 ~l~~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv-----------------~~g--~iivTt-R----- 253 (382)
..... .....+. +.+..+.+.+. .++.-++|+|++ .++ .+|++| .
T Consensus 87 g~~~dviEIdaas~~gV-d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 87 GISSDVLEIDAASNRGI-ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred cCCccceeechhhcccH-HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 11100 0000111 11222222221 236679999999 233 444444 3
Q ss_pred ---ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 045887 254 ---SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 254 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
...|..|.+.+++.++..+.+.+.+...+. .-.++....|++.++|.+--
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHH
Confidence 344577999999999999888887644322 11245678899999999844
No 40
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=6.2e-06 Score=78.11 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=104.5
Q ss_pred cccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhccc-CCCCceEEEEeCCCCCHHHHHHHH
Q 045887 128 VNNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEET-NEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 128 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
|......+|-+.....|...+.++.. +.+.++|+.|+||||+|..+++.+.-.. ..+... ....++......+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 33444578889999999998887764 5799999999999999999988841100 001111 001111111233333
Q ss_pred HHH-------hCCC--C-----CCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CC-C-e
Q 045887 206 ATA-------LKLS--P-----TKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DN-H-M 247 (382)
Q Consensus 206 ~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~-g-~ 247 (382)
... +..+ . ...... +.+..+.+.+.. +++-++|+|++ .. . -
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 222 1000 0 001112 334455555542 46679999999 22 2 4
Q ss_pred EEEecc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 248 FCWGLR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 248 iivTtR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
|++|++ ...|..+.+.+++.++..+++.+.... .+ -.++....++..++|.|..+..+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455554 334578899999999999999874221 11 124557789999999998665443
No 41
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.49 E-value=3.9e-06 Score=74.35 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=81.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
...+.|+|..|+|||.|.+.+++.+.+.... ..++|++ ..++...+...+... ....+.+.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh-
Confidence 4568999999999999999999984322222 2356764 345555555544321 1123444444
Q ss_pred CCeEEEEEEcC---------------------CCC-eEEEecc---------------c-cCceeeecCCCChHHHHHHH
Q 045887 233 KKKFVLILDYI---------------------DNH-MFCWGLR---------------S-MGCEEVIVPPLSKEEALNLF 274 (382)
Q Consensus 233 ~kr~LlVlDdv---------------------~~g-~iivTtR---------------~-~~~~~~~l~~L~~~ea~~Lf 274 (382)
.-=+|++||+ ..| ++|+|+. . ...-.+++.+++.++..+++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 3558889999 456 9999997 1 12346799999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 275 LDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
.+.+...+... .++++.-|++.+.+..-.+
T Consensus 176 ~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 176 QKKAKERGIEL---PEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHhCCCC---cHHHHHHHHHhhcCCHHHH
Confidence 98875543322 2455566666665444333
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.5e-06 Score=84.58 Aligned_cols=167 Identities=15% Similarity=0.085 Sum_probs=94.8
Q ss_pred ccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC
Q 045887 133 SRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL 211 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 211 (382)
..+|-+...+.|..++.++.. +.+.++|++|+||||+|+.+++.+. ..+.+...+|.|.+.. .+......-+..++.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~~ 92 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCL-AVRRGAHPDVLEIDA 92 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhH-HHhcCCCCceEEecc
Confidence 367778888888888877765 5679999999999999999988831 1122222223221100 000000000000000
Q ss_pred CCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEEecc---------ccCcee
Q 045887 212 SPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEE 259 (382)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~ 259 (382)
. ...+. +.+..+.+.+.. +++-++|+|++ .+. .+|++|. ...+..
T Consensus 93 ~--~~~~v-d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~ 169 (504)
T PRK14963 93 A--SNNSV-EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQH 169 (504)
T ss_pred c--ccCCH-HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEE
Confidence 0 00111 112222222211 25668889988 233 4444443 223567
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 260 VIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 260 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
+++.+++.++..+.+.+.+...+... .++....|++.++|.+--+
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 89999999999999988765443211 2466788999999988654
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=3.4e-06 Score=86.84 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=88.5
Q ss_pred cccCchHHHHH---HHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 132 TSRRNTKKIVK---KVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 132 ~~~~gr~~~~~---~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
..++|.+..+. .+...+..+..+.+.++|++|+||||||+.+++. ....|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~---~~~~f~---~lna~~-~~i~--------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH---TRAHFS---SLNAVL-AGVK--------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH---hcCcce---eehhhh-hhhH---------
Confidence 34778777663 4666677777778899999999999999999987 333331 111110 0010
Q ss_pred hCCCCCCCchHHHHHHHHHHHHh-CCCeEEEEEEcC---------------CCC-eEEEe--ccc----------cCcee
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLK-VKKKFVLILDYI---------------DNH-MFCWG--LRS----------MGCEE 259 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv---------------~~g-~iivT--tR~----------~~~~~ 259 (382)
+..+......+.+. .+++.+|+||++ ..| .++++ |.. ..+..
T Consensus 92 ---------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v 162 (725)
T PRK13341 92 ---------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRL 162 (725)
T ss_pred ---------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccc
Confidence 11111112222221 126779999999 345 34442 321 12457
Q ss_pred eecCCCChHHHHHHHHHhhcCC----CCCCCCchHHHHHHHHHHcCCchh
Q 045887 260 VIVPPLSKEEALNLFLDKVGRN----ILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 260 ~~l~~L~~~ea~~Lf~~~a~~~----~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
+.+++|+.++...++.+.+... +.....-.++....|++.+.|..-
T Consensus 163 ~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 163 FRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 8999999999999998765410 000111224566778888888653
No 44
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.48 E-value=4.4e-07 Score=85.44 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=60.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCchHH------HHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL--DLVKLQAEIATALKLSPTKDEDKV------RRAR 224 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 224 (382)
-...+|+|++|+||||||+.+|+.. . .++|+..+||.+.+.. .+.++++.|...+-....+..... ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999983 2 2489999999998876 677888888643222222222111 1122
Q ss_pred HHHHHHhCCCeEEEEEEcC
Q 045887 225 RLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 225 ~l~~~l~~~kr~LlVlDdv 243 (382)
........++.++|++|++
T Consensus 247 ~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHcCCCEEEEEECh
Confidence 2222222359999999999
No 45
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.48 E-value=4.8e-06 Score=74.37 Aligned_cols=139 Identities=11% Similarity=0.143 Sum_probs=80.8
Q ss_pred HHHHHHHHhcC-CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCch
Q 045887 140 IVKKVWEDLMG-DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDED 218 (382)
Q Consensus 140 ~~~~l~~~l~~-~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 218 (382)
.+..+.++... .....+.|+|.+|+|||+||+.+++... .... ...+++...... .+
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~~------~~------------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPLL------AF------------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhHH------HH-------------
Confidence 33444444332 3456889999999999999999998721 2222 345555433110 00
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEcC-------------------CCC--eEEEecc--------------c-cCceeeec
Q 045887 219 KVRRARRLLGKLKVKKKFVLILDYI-------------------DNH--MFCWGLR--------------S-MGCEEVIV 262 (382)
Q Consensus 219 ~~~~~~~l~~~l~~~kr~LlVlDdv-------------------~~g--~iivTtR--------------~-~~~~~~~l 262 (382)
... . ..-+||+||+ ..+ .+++|++ . ..+..+++
T Consensus 86 ---------~~~-~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l 154 (227)
T PRK08903 86 ---------DFD-P-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYEL 154 (227)
T ss_pred ---------hhc-c-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEe
Confidence 001 1 2335666776 233 3555554 0 11256789
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhh
Q 045887 263 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 314 (382)
Q Consensus 263 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L 314 (382)
++|+.++-..++.+.+-..+... .++....+++.+.|.+..+..+...+
T Consensus 155 ~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 155 KPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999887777766432222211 24567778888888888876665544
No 46
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.47 E-value=1.6e-05 Score=72.42 Aligned_cols=172 Identities=18% Similarity=0.168 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCC---CceEEEEEeCCCCcHHHHHHHHHhchhcccCC---CCceEEEEeCCCCCHHHHHHHHHHHhCC
Q 045887 138 KKIVKKVWEDLMGD---KVTKIGVWGMGGIGKTAIMRHINNRPQEETNE---FSDVIWVTVSQPLDLVKLQAEIATALKL 211 (382)
Q Consensus 138 ~~~~~~l~~~l~~~---~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 211 (382)
.+.+++|.+.+..+ ..+.+.|+|.+|.|||++++.+........+. --.++.|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34455555555433 46789999999999999999998762211110 1146788888899999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---------------------CCC----eEEEecc------------c
Q 045887 212 SPTKDEDKVRRARRLLGKLKVKKKFVLILDYI---------------------DNH----MFCWGLR------------S 254 (382)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g----~iivTtR------------~ 254 (382)
+.....+.........+.++.-+-=+||+|.+ ++. -|.+.|+ .
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 77665666555555556665546668999999 221 4566666 1
Q ss_pred cCceeeecCCCChHHH-HHHHHHhh--cCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 255 MGCEEVIVPPLSKEEA-LNLFLDKV--GRNILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 255 ~~~~~~~l~~L~~~ea-~~Lf~~~a--~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
....++.++..+.++- ..|+.... ..-....+-...+++..|...++|+.--+..
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 1224567777666544 44443321 1111123334578899999999998755443
No 47
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=5.7e-06 Score=87.11 Aligned_cols=232 Identities=14% Similarity=0.186 Sum_probs=141.0
Q ss_pred cCchHHHHHHHHHHhc---CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCC---HHHHHHHHHH
Q 045887 134 RRNTKKIVKKVWEDLM---GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD---LVKLQAEIAT 207 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~---~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~i~~ 207 (382)
.+||+.+++.|...+. .+...++.+.|..|+|||+|++.|.....+.+..|-...+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 5799999999987775 455679999999999999999999888433222222111212222222 2233333333
Q ss_pred Hh-------------------CCCC------------------CC----CchH-----HHHHHHHHHHHhCCCeEEEEEE
Q 045887 208 AL-------------------KLSP------------------TK----DEDK-----VRRARRLLGKLKVKKKFVLILD 241 (382)
Q Consensus 208 ~l-------------------~~~~------------------~~----~~~~-----~~~~~~l~~~l~~~kr~LlVlD 241 (382)
++ +... +. .... ......+.......++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 1100 00 0000 1122333344444579999999
Q ss_pred cC-----------------CC-------C-eEEEecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCC
Q 045887 242 YI-----------------DN-------H-MFCWGLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPT 287 (382)
Q Consensus 242 dv-----------------~~-------g-~iivTtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 287 (382)
|+ .+ - -.+.|.+ ......|.|.||+..+...+......... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 11 1 2222333 11226789999999999999988754422 2
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHhhhcC------CCChhHHHHHHHHHhhccccCCCChHhHHHHHHHhHhhCCCCCch
Q 045887 288 LNEEIINSVVEECAGLQLAIFTVVGCMRG------VDEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYRRLKNKKVQ 361 (382)
Q Consensus 288 ~~~~~~~~i~~~c~glPLal~~~~~~L~~------~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 361 (382)
...+....|.++..|.|+-+..+-..+.. +.+...|..-..++. ..+....+...+..-.+.| |...|
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~~~~~~~vv~~l~~rl~kL-~~~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----ILATTDAVVEFLAARLQKL-PGTTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----CchhhHHHHHHHHHHHhcC-CHHHH
Confidence 23467788999999999999998887765 234445544333322 1122233556677888888 88888
Q ss_pred hHhhhcccCCCCcc
Q 045887 362 HCFLYCALYPEDFA 375 (382)
Q Consensus 362 ~cf~~~s~fp~~~~ 375 (382)
+.+...|++-..|.
T Consensus 312 ~Vl~~AA~iG~~F~ 325 (849)
T COG3899 312 EVLKAAACIGNRFD 325 (849)
T ss_pred HHHHHHHHhCccCC
Confidence 88887777766554
No 48
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=1.4e-06 Score=71.30 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 136 NTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 136 gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
|++..+..+...+..+..+.+.|+|.+|+|||++++.+++.+. ..-..++++.....
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~ 58 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDL 58 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhh
Confidence 6788888998888776778999999999999999999999832 22234667765543
No 49
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=1e-06 Score=71.18 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=61.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
-+++.|.|+.|+|||||++++++++. ....++|+++......... .. +....+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLA----------------DP-DLLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHh----------------hh-hhHHHHHHhhcc
Confidence 46899999999999999999998732 3345677776553221100 00 012223333333
Q ss_pred CCeEEEEEEcC----------------CCC-eEEEecc------------ccC-ceeeecCCCChHHH
Q 045887 233 KKKFVLILDYI----------------DNH-MFCWGLR------------SMG-CEEVIVPPLSKEEA 270 (382)
Q Consensus 233 ~kr~LlVlDdv----------------~~g-~iivTtR------------~~~-~~~~~l~~L~~~ea 270 (382)
++.+++||++ .+. +|++|+. ..| ...+++.||+-.|-
T Consensus 61 -~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 -GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6788999999 334 9999887 011 14568999987763
No 50
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.9e-05 Score=75.30 Aligned_cols=169 Identities=12% Similarity=0.062 Sum_probs=99.6
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCC-CCceE----EEEeCCCCCHHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNE-FSDVI----WVTVSQPLDLVKLQAE 204 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~-f~~~~----wv~~~~~~~~~~~~~~ 204 (382)
....+|-+...+.|.+.+.++.+ +.+.++|+.|+||+|+|..+++.+ .... ..... -.++.. +..-...+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L--lc~~~~~~~~~~~~~~~l~~-~~~c~~c~~ 94 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL--LATPPPGGDGAVPPPTSLAI-DPDHPVARR 94 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH--hCCCCCCCCccccccccccC-CCCChHHHH
Confidence 34477888888899998888765 579999999999999999998874 1111 00000 000000 000012222
Q ss_pred HHHHhCC-----C--C-C------CCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-e
Q 045887 205 IATALKL-----S--P-T------KDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-M 247 (382)
Q Consensus 205 i~~~l~~-----~--~-~------~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~ 247 (382)
+...-.. . . . .... .+.+..+.+.+.. +++-++|+|++ .++ .
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~-VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVIT-VDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEeccccccccccccccc-HHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 2111000 0 0 0 0111 2334455555442 36679999999 234 5
Q ss_pred EEEecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 248 FCWGLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 248 iivTtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
+|++|. ...+..+.+.+++.++..+++....... ..+....++..++|.|+.+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 666665 3446788999999999999998763211 1122367899999999865444
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.4e-05 Score=78.58 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=94.7
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccC-C-----------------CCceEEEE
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETN-E-----------------FSDVIWVT 191 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~ 191 (382)
....+|.+.....|...+.++.. +.+.++|++|+||||+|+.+++.+..... . +.....++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 34477878877888888877766 56899999999999999999887311000 0 00122222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------------CCC--eEEE-e
Q 045887 192 VSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------------DNH--MFCW-G 251 (382)
Q Consensus 192 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------------~~g--~iiv-T 251 (382)
.+...+...+ +.|...... .-..+ ++-++|+|++ .++ .+++ |
T Consensus 93 aa~~~gid~i-R~i~~~~~~----------------~p~~~-~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY----------------RPMEG-KYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh----------------ChhcC-CeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 2211122111 122111110 00112 5678999988 234 3333 4
Q ss_pred cc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcC-CchhHHHHHHhh
Q 045887 252 LR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECA-GLQLAIFTVVGC 313 (382)
Q Consensus 252 tR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~-glPLal~~~~~~ 313 (382)
+. ...+..+++.+++.++....+.+.+...+... .++....|++.++ +++.++..+-..
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 43 23456789999999999988888764332212 2456677888775 456666666543
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.7e-05 Score=74.38 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=93.3
Q ss_pred cCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchh---cccCCCCceEEEEe-CCCCCHHHHHHHHHHH
Q 045887 134 RRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQ---EETNEFSDVIWVTV-SQPLDLVKLQAEIATA 208 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~ 208 (382)
.+|-+..++.|.+++..+.. +...++|+.|+||||+|+.+++.+. ....|+|...|... +......+ .+++...
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~ 84 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEE 84 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHH
Confidence 45667778888888877654 6778999999999999999988631 12345554445432 22333333 3333343
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceee
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEV 260 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~ 260 (382)
+...+. .+ ++-++|+|++ .++ .+|++|. ...|..+
T Consensus 85 ~~~~p~----------------~~-~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 85 VNKKPY----------------EG-DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HhcCcc----------------cC-CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 322111 12 4445555554 334 5555555 2345788
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
++.+++.++....+.+...+ ...+.+..++..++|.|.-+.
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eCCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 99999999998887665321 113456788999999886554
No 53
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.41 E-value=1.5e-05 Score=68.87 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=80.5
Q ss_pred HHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccC------------------CCCceEEEEeCC-CCCHHHHH
Q 045887 143 KVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETN------------------EFSDVIWVTVSQ-PLDLVKLQ 202 (382)
Q Consensus 143 ~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~~~-~~~~~~~~ 202 (382)
.|.+.+..+.. +.+.++|+.|+||||+|+.+.+.+..... .+....++.... .... +..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~-~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKV-DQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCH-HHH
Confidence 45556666655 67999999999999999999887411100 111112222111 1111 112
Q ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------c
Q 045887 203 AEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------S 254 (382)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~ 254 (382)
++++..+.... .. +.+-++|+||+ .+. .+|++|+ .
T Consensus 82 ~~i~~~~~~~~----------------~~-~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 82 RELVEFLSRTP----------------QE-SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHccCc----------------cc-CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 22222221110 01 25667888887 223 5555554 2
Q ss_pred cCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 045887 255 MGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 255 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
..+..+++.+++.++..+.+.+. + . .++.+..|+..++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~--g----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ--G----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc--C----C---CHHHHHHHHHHcCCCccc
Confidence 23467899999999999888776 1 1 146688999999998863
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.6e-05 Score=76.52 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=87.8
Q ss_pred cCchHHHHHHHHHHhcCCC----------ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHH
Q 045887 134 RRNTKKIVKKVWEDLMGDK----------VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 203 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~----------~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 203 (382)
.+|-+..++.|.+.+..+. .+.+.++|++|+|||++|+.+++.+ .... .. + .+++.-...+
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l--~c~~-~~--~----~~Cg~C~~C~ 77 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL--QCTD-PD--E----PGCGECRACR 77 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh--CCCC-CC--C----CCCCCCHHHH
Confidence 4566777777888776653 4678899999999999999998763 1110 00 0 0000001111
Q ss_pred HHHHHhCC-----CCC-CCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEEecc-
Q 045887 204 EIATALKL-----SPT-KDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCWGLR- 253 (382)
Q Consensus 204 ~i~~~l~~-----~~~-~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iivTtR- 253 (382)
.+...-.. ... .....+ .++.+.+.+.. +++-++|+|++ .++ .+|++|.
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~-~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVD-EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHH-HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 11100000 000 001111 12233332221 24557888998 234 4555444
Q ss_pred --------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 254 --------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 254 --------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
...|..+.+.+++.++..+.+..... . ..+.+..++..++|.|....
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~---~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V---DPETARRAARASQGHIGRAR 211 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHH
Confidence 33457889999999999988875421 1 13567789999999997553
No 55
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.6e-05 Score=78.05 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=95.8
Q ss_pred cccccCchHHHHHHHHHHhcCCCce-EEEEEeCCCCcHHHHHHHHHhchhcc-c-----------------CCCCceEEE
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVT-KIGVWGMGGIGKTAIMRHINNRPQEE-T-----------------NEFSDVIWV 190 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~gGvGKTtLa~~v~~~~~~~-~-----------------~~f~~~~wv 190 (382)
.....+|-+..++.|.+.+..+..+ .+.++|+.|+||||+|+.+++.+.-. . ..+..++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3444678788888888888777654 89999999999999999998752000 0 011123344
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEe
Q 045887 191 TVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWG 251 (382)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivT 251 (382)
+.+...+..++ +.++......+ ..+ +.-++|+|++ .+. .+|++
T Consensus 91 daas~~~vddI-R~Iie~~~~~P----------------~~~-~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSCYLP----------------ISS-KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHHH-HHHHHHHHhcc----------------ccC-CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 43332222221 12222111000 112 5567888988 234 55555
Q ss_pred cc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 252 LR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 252 tR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
|. ...+..+++.+++.++....+.+.+...+... .++....|++.++|.+--+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 54 33457789999999999999888765443211 2456678999999887543
No 56
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.39 E-value=6.9e-06 Score=80.58 Aligned_cols=161 Identities=14% Similarity=0.227 Sum_probs=102.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
...+.|+|..|+|||+|++.+++.+...... ..+++++ ..++...+...++... .....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-
Confidence 3568999999999999999999973221122 2345554 3456666666654210 12233444443
Q ss_pred CCeEEEEEEcC---------------------CCC-eEEEecc---------------ccC-ceeeecCCCChHHHHHHH
Q 045887 233 KKKFVLILDYI---------------------DNH-MFCWGLR---------------SMG-CEEVIVPPLSKEEALNLF 274 (382)
Q Consensus 233 ~kr~LlVlDdv---------------------~~g-~iivTtR---------------~~~-~~~~~l~~L~~~ea~~Lf 274 (382)
..-+||+||+ ..| .||+||. .+. .-.+.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3458899999 556 7899876 111 235689999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhh------c---CCCChhHHHHHHHHH
Q 045887 275 LDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM------R---GVDEIHEWRNALNEL 330 (382)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L------~---~~~~~~~w~~~l~~l 330 (382)
.+.+-..+.. ..-.++...-|+..++|.|-.+..+...+ . ..-+.+.-+.++..+
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9887543211 12335788899999999998776654332 2 114455555666554
No 57
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=8.8e-06 Score=82.27 Aligned_cols=154 Identities=15% Similarity=0.220 Sum_probs=96.2
Q ss_pred ccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCC-------------------CCceE
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNE-------------------FSDVI 188 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~-------------------f~~~~ 188 (382)
......+|.+..++.|.+++..+.+ +.+.++|+.|+||||+|+.+++.+. .... |...+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceE
Confidence 3444578889999999999887765 5789999999999999999988731 1111 11111
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH-----HhCCCeEEEEEEcC------------------CC
Q 045887 189 WVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGK-----LKVKKKFVLILDYI------------------DN 245 (382)
Q Consensus 189 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~kr~LlVlDdv------------------~~ 245 (382)
.++......+ + .+..+.+. ..+ ++-++|+|++ ..
T Consensus 92 EidaAs~~gV---------------------d-~IRelle~a~~~P~~g-k~KVIIIDEad~Ls~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 92 EIDAASNTGI---------------------D-NIREVLENAQYAPTAG-KYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (709)
T ss_pred EEeccccCCH---------------------H-HHHHHHHHHHhhhhhC-CcEEEEEECccccCHHHHHHHHHHHHhCCC
Confidence 2221111111 1 11112211 123 5668889998 23
Q ss_pred C-eEEEecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 246 H-MFCWGLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 246 g-~iivTtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
. .+|++|. ...|..|.+.+++.++....+.+.+-..+... ..+....|++.++|.+.-+..
T Consensus 149 ~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHH
Confidence 3 6666665 22345678999999999999888765443211 245678899999998854433
No 58
>PF14516 AAA_35: AAA-like domain
Probab=98.38 E-value=3.5e-05 Score=72.73 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=110.2
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-----CCHHHHHHHHH
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-----LDLVKLQAEIA 206 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~ 206 (382)
...+.|...-+.+.+.+.++ -..+.|.|+..+|||+|...+.+.+ . ...+. .+++++..- .+....++.++
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-H-HCCCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 34567776666677776653 3689999999999999999998883 2 23443 557776541 24555555554
Q ss_pred ----HHhCCCCCC-------CchHHHHHHHHHHHH-hC-CCeEEEEEEcC-----------------------------C
Q 045887 207 ----TALKLSPTK-------DEDKVRRARRLLGKL-KV-KKKFVLILDYI-----------------------------D 244 (382)
Q Consensus 207 ----~~l~~~~~~-------~~~~~~~~~~l~~~l-~~-~kr~LlVlDdv-----------------------------~ 244 (382)
++|+....- ..+.......+.+.+ .. +++.+|++|++ .
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 445443210 011222223333332 22 48999999999 1
Q ss_pred CC-eEEEec-c-----------ccCc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 245 NH-MFCWGL-R-----------SMGC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 245 ~g-~iivTt-R-----------~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
.. ++++.. . .... ..++|++++.+|...|+...-.. --....++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-------~~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-------FSQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-------CCHHHHHHHHHHHCCCHHHHHHH
Confidence 11 222221 1 1111 46889999999999998876221 11234889999999999999999
Q ss_pred HhhhcCC
Q 045887 311 VGCMRGV 317 (382)
Q Consensus 311 ~~~L~~~ 317 (382)
+..+..+
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9998663
No 59
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=2.9e-05 Score=76.83 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=93.5
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCc-eEEEEeCCCCCHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSD-VIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 207 (382)
.....+|-+..+..|...+..+.. +.+.++|+.|+||||+|+.+++.+. ....... ..+..+... .....+..
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C----~~C~~i~~ 93 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQC----TNCISFNN 93 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCC----hHHHHHhc
Confidence 334467878888888877776654 6889999999999999999988731 1111000 000000000 01111111
Q ss_pred HhCC-----CCCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEE-Eecc-----
Q 045887 208 ALKL-----SPTKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFC-WGLR----- 253 (382)
Q Consensus 208 ~l~~-----~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~ii-vTtR----- 253 (382)
.... ........++ ...+.+... .+++-++|+|++ .+. .+| .||+
T Consensus 94 ~~h~Dv~eidaas~~~vd~-Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDD-IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CCCCcEEEeeccCCCCHHH-HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0000 0000011111 111222211 126678999998 233 444 4544
Q ss_pred ---ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 254 ---SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 254 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
...+..+++.+++.++....+.+.+...+... ..+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 23456789999999999999988875433211 2355677999999987443
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=2e-05 Score=79.88 Aligned_cols=167 Identities=13% Similarity=0.161 Sum_probs=96.3
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|-+..++.|...+..+.+ +.+.++|..|+||||+|+.+++.+.- ...+. +.++..-..++.|...
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcC
Confidence 344477888888889888887765 45789999999999999999887411 11100 0011111222222210
Q ss_pred hCC-----CCCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC-----------------C-CC-eEEEecc-------
Q 045887 209 LKL-----SPTKDEDKVRRARRLLGKLK----VKKKFVLILDYI-----------------D-NH-MFCWGLR------- 253 (382)
Q Consensus 209 l~~-----~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv-----------------~-~g-~iivTtR------- 253 (382)
-.. ........ +..+.+.+.+. .+++-++|+|++ . .. ++|++|.
T Consensus 86 ~~~D~ieidaas~~~V-ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 86 RFVDLIEIDAASRTKV-EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCceeecccccCCH-HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 000 00000111 11222222221 136678999999 2 23 5555544
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
...|..|.+.+|+.++....+.+.+-..+. ....+....|++.++|.|--+.
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 233678899999999999998876533221 1123556789999999876433
No 61
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.35 E-value=1.4e-06 Score=82.54 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=61.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCchH------HHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP--LDLVKLQAEIATALKLSPTKDEDK------VRRAR 224 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 224 (382)
-..++|+|++|+|||||++.+++.+ ..++|+..+|+.+.+. .++.++++.+...+-....+.... .....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I--~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAI--TRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhh--cccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4689999999999999999999984 2347998999998865 688999999855432222211111 11222
Q ss_pred HHHHHHhCCCeEEEEEEcC
Q 045887 225 RLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 225 ~l~~~l~~~kr~LlVlDdv 243 (382)
........+++++|++|.+
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 2223333359999999999
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.2e-05 Score=77.11 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=94.4
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhccc------------------CCCCceEEE
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEET------------------NEFSDVIWV 190 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 190 (382)
.....+|-+..++.|...+..+.. +.+.++|+.|+||||+|+.+++.+.-.. ..|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 334467888888889988887654 5678999999999999999988631000 012222233
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------------CC-C-eEE-E
Q 045887 191 TVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------------DN-H-MFC-W 250 (382)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------------~~-g-~ii-v 250 (382)
+......+.++ +.+ ...+...-..+++-++|+|++ .+ . .+| +
T Consensus 94 daas~~gvd~i-r~i-----------------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEET-KEI-----------------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHHH-HHH-----------------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 22121111111 111 111111111126668999998 22 3 444 4
Q ss_pred ecc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHH
Q 045887 251 GLR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTV 310 (382)
Q Consensus 251 TtR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~ 310 (382)
||. ...|..+++.+++.++....+.+.+...+. .-.++....|++.++|.+- |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 233578899999999988888775533221 1224556778999999664 44433
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.35 E-value=1.3e-05 Score=84.49 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=92.6
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcc--cCC-CCceEE-EEeCCCCCHHHHHHHHHHH
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEE--TNE-FSDVIW-VTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~--~~~-f~~~~w-v~~~~~~~~~~~~~~i~~~ 208 (382)
+++||+.++.++++.|......-+.++|.+|+||||+|..+++++... ... .+..+| ++++.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~-------------- 253 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL-------------- 253 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh--------------
Confidence 379999999999999988776777899999999999999999884211 101 122232 22221
Q ss_pred hCCCCCCCchHHHHHHHHHHHHh-CCCeEEEEEEcC-----------------------CCC--eEEEecc---------
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLK-VKKKFVLILDYI-----------------------DNH--MFCWGLR--------- 253 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv-----------------------~~g--~iivTtR--------- 253 (382)
+..........+.....+.+.+. .+++.+|++|++ ..| ++|-||.
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~ 333 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFE 333 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhh
Confidence 00000011122233333343332 236889999987 345 5555554
Q ss_pred -----ccCceeeecCCCChHHHHHHHHHhhcCCCC-CCCCchHHHHHHHHHHcCCc
Q 045887 254 -----SMGCEEVIVPPLSKEEALNLFLDKVGRNIL-HVPTLNEEIINSVVEECAGL 303 (382)
Q Consensus 254 -----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~~i~~~c~gl 303 (382)
......+.+++++.+++.+++....-.-.. +.-.-..+....+++.+++.
T Consensus 334 ~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 334 KDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred ccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 112357899999999999997554321111 11111245556677777654
No 64
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=2.1e-05 Score=79.40 Aligned_cols=171 Identities=12% Similarity=0.185 Sum_probs=97.3
Q ss_pred ccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCC---CCceEEEEeCCCCCHHHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNE---FSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~ 204 (382)
.....++|-+..++.|.+++.++.. +.+.++|..|+||||+|+.+++.+ .... ..+... ..++.-..++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L--nC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL--NCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh--cCCCcccccCCCC----CCCCccHHHHH
Confidence 3444577878888889999887765 677999999999999999998773 1110 000000 11111122222
Q ss_pred HHHHhCC-----CCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC-----------------C-CC-eEEEec-c--
Q 045887 205 IATALKL-----SPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI-----------------D-NH-MFCWGL-R-- 253 (382)
Q Consensus 205 i~~~l~~-----~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv-----------------~-~g-~iivTt-R-- 253 (382)
|...-.. ........+ .+..+.+.... ++.-++|+|++ . .. .+|++| .
T Consensus 87 i~~g~h~D~~eldaas~~~Vd-~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVD-EVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHcCCCCceeecCcccccCHH-HHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 2110000 000011111 12222222221 24558899999 2 23 555444 3
Q ss_pred ------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 254 ------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 254 ------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
...|..+++.+++.++..+.+.+.+...+... ..+....|++.++|.+--+..
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 33467889999999999999888764433211 235678889999987754433
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.34 E-value=7.9e-05 Score=76.01 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=101.3
Q ss_pred ccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCC---CceEEEEeCC---CCCHHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEF---SDVIWVTVSQ---PLDLVKLQAE 204 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~---~~~~~~~~~~ 204 (382)
....+|++..+..+...+.......+.|+|++|+||||||+.+++. ......+ ...-|+.+.. ..+...+...
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~-~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEE-AKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHh-hhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 3446788888888887776666778999999999999999999876 2222222 1233554432 1122222111
Q ss_pred H---------------HHHhCCC------------------CCCCchHHHHHHHHHHHHhCCCeEEEEEEcC--------
Q 045887 205 I---------------ATALKLS------------------PTKDEDKVRRARRLLGKLKVKKKFVLILDYI-------- 243 (382)
Q Consensus 205 i---------------~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-------- 243 (382)
+ +...+.. ..+.. ....+..+.+.+.. ++++++.|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhh-CeEEeecceeccCCcccc
Confidence 1 1111110 00011 12345677777777 7888776543
Q ss_pred ----------CCC-eEEE--ecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcC
Q 045887 244 ----------DNH-MFCW--GLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECA 301 (382)
Q Consensus 244 ----------~~g-~iiv--TtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~ 301 (382)
.+. .+++ ||+ ...+..+.+.+++.++.+.++.+.+...+... .++....|.+.+.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCC
Confidence 122 2444 455 11234678999999999999998765332111 1345555666665
Q ss_pred CchhHHHHHHhh
Q 045887 302 GLQLAIFTVVGC 313 (382)
Q Consensus 302 glPLal~~~~~~ 313 (382)
.-+-++..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 446666666443
No 66
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.33 E-value=2.1e-05 Score=73.01 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=97.9
Q ss_pred ccCchHHHHHHHHHHhcCCC---ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 133 SRRNTKKIVKKVWEDLMGDK---VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~---~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
.+.+|+..+..+...+.+.. +..|.|+|-+|.|||.+.+.+.+. ... ..+|+++-+.++...++..|+.++
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~---~n~---~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRK---LNL---ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhh---cCC---cceeeehHHhccHHHHHHHHHHHh
Confidence 46789999999999987654 345689999999999999999988 222 368999999999999999999998
Q ss_pred CCCCCCC-------chHHHHHHHHHH--HHhC-CCeEEEEEEcC---------------------CCC-eEEEecc----
Q 045887 210 KLSPTKD-------EDKVRRARRLLG--KLKV-KKKFVLILDYI---------------------DNH-MFCWGLR---- 253 (382)
Q Consensus 210 ~~~~~~~-------~~~~~~~~~l~~--~l~~-~kr~LlVlDdv---------------------~~g-~iivTtR---- 253 (382)
+....+. .+..+....+.+ .... ++.++|||||+ ... -+|+++-
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 6322211 112222222222 1112 36899999999 223 4455544
Q ss_pred -----ccCc---eeeecCCCChHHHHHHHHHh
Q 045887 254 -----SMGC---EEVIVPPLSKEEALNLFLDK 277 (382)
Q Consensus 254 -----~~~~---~~~~l~~L~~~ea~~Lf~~~ 277 (382)
++|+ .++..+.-+.+|...++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3455 34588899999999888664
No 67
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.7e-05 Score=78.95 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=93.7
Q ss_pred ccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccC-------------------CCCceE
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETN-------------------EFSDVI 188 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~ 188 (382)
......+|-+..++.|.+++..+.+ +.+.++|+.|+||||+|+.+++.+. ... .|..++
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 3444577888889999999987765 4678999999999999999988731 111 111123
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEE
Q 045887 189 WVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFC 249 (382)
Q Consensus 189 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~ii 249 (382)
.++.+....+.++ +.++..+... -..++.-++|+|++ .+. .+|
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 3332222222221 2222221110 01125568889988 233 555
Q ss_pred Ee-cc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 250 WG-LR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 250 vT-tR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
++ |. ...|..+++.+++.++....+.+.+-..+... ..+....|++.++|.|.-+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHH
Confidence 44 43 22346678999999988877766654332211 23456778889998875443
No 68
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.31 E-value=1.4e-05 Score=83.30 Aligned_cols=133 Identities=18% Similarity=0.181 Sum_probs=83.8
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhccc--CCC-CceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEET--NEF-SDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
+++||+++++++++.|......-+.++|++|+|||++|+.+++++.... ..+ +..+|.. +...+. ..
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~----a~- 252 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL----AG- 252 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh----hh-
Confidence 4889999999999998877667778999999999999999998842111 111 2333321 111111 00
Q ss_pred CCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------------CCC--eEEEecc----------
Q 045887 210 KLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------------DNH--MFCWGLR---------- 253 (382)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------------~~g--~iivTtR---------- 253 (382)
.....+.+.....+.+.+...++.+|++|++ ..| .+|-+|.
T Consensus 253 ---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~ 329 (731)
T TIGR02639 253 ---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEK 329 (731)
T ss_pred ---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhh
Confidence 0001233344455555554336788999988 234 4444443
Q ss_pred ----ccCceeeecCCCChHHHHHHHHHhh
Q 045887 254 ----SMGCEEVIVPPLSKEEALNLFLDKV 278 (382)
Q Consensus 254 ----~~~~~~~~l~~L~~~ea~~Lf~~~a 278 (382)
......+++++++.++..+++....
T Consensus 330 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 330 DRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1113568999999999999998654
No 69
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=3.2e-05 Score=77.36 Aligned_cols=170 Identities=15% Similarity=0.181 Sum_probs=95.1
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|.+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++.+ ...+ |.... .++.-..++.+...
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L--~C~~-----~~~~~-~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI--NCLN-----PKDGD-CCNSCSVCESINTN 85 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh--cCCC-----CCCCC-CCcccHHHHHHHcC
Confidence 344577889999999998876654 578999999999999999998873 1111 11100 11111122222111
Q ss_pred hCC-----CCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC-----------------CC-C-eEEEec-c------
Q 045887 209 LKL-----SPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI-----------------DN-H-MFCWGL-R------ 253 (382)
Q Consensus 209 l~~-----~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv-----------------~~-g-~iivTt-R------ 253 (382)
... ........+ ..+.+.+.... +++-++|+|++ .+ . .+|++| .
T Consensus 86 ~h~DiieIdaas~igVd-~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 86 QSVDIVELDAASNNGVD-EIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCceEEeccccccCHH-HHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 100 000001111 11222221111 13446999988 22 3 444444 3
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTVV 311 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~~ 311 (382)
...|..+++.+++.++....+...+...+... ..+.+..+++.++|.|- |+..+-
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 23356789999999999988888764332211 14567789999999664 444443
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.26 E-value=6.2e-06 Score=79.06 Aligned_cols=145 Identities=15% Similarity=0.211 Sum_probs=86.3
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|.++.+++|.+.+. . ...+-+.++|++|+|||++|+.+++. ....| +.+.. ..
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~---l~~~~-----~~v~~----~~ 191 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNATF-----IRVVG----SE 191 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh---CCCCE-----Eecch----HH
Confidence 6788888888877653 1 12456999999999999999999988 33333 22211 11
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
+.... + .........+.+......+.+|++|++ ..+
T Consensus 192 l~~~~---~-------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 192 LVRKY---I-------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHh---h-------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 11110 0 011112222333333335677777775 124
Q ss_pred -eEEEecc----------ccC--ceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 247 -MFCWGLR----------SMG--CEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 247 -~iivTtR----------~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
.||.||. ..+ ...++++..+.++..++|...+.........+ ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 6788886 111 24678999999999999998765433212222 355777777764
No 71
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.23 E-value=0.00011 Score=70.21 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=94.1
Q ss_pred cccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcc-cC------------------CCCceEEEE
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEE-TN------------------EFSDVIWVT 191 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~-~~------------------~f~~~~wv~ 191 (382)
...+|.+..++.|.+++.++.. +.+.++|++|+||||+|+.++..+.-. .. +++ .++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEee
Confidence 3467889999999998877654 578899999999999999998773110 00 121 22332
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------------C-CC-eEEEec
Q 045887 192 VSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------------D-NH-MFCWGL 252 (382)
Q Consensus 192 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------------~-~g-~iivTt 252 (382)
.+...... ..+.+...+...+ ..+ ++-++|+|++ . +. .+|++|
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~p----------------~~~-~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYAP----------------SSG-KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcCc----------------ccC-CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 22111111 1122222221100 112 4457778876 1 23 444554
Q ss_pred c---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 253 R---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 253 R---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
. ...+..+++.+++.++..+.+...+-..+... .++.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 4 12245778999999999988887664333211 24677889999999987654443
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=0.00011 Score=70.64 Aligned_cols=154 Identities=11% Similarity=0.184 Sum_probs=90.4
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcc-----cCCCCce-EEEEeCCCCCHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEE-----TNEFSDV-IWVTVSQPLDLVKLQA 203 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~~~~~~~~~~~~~ 203 (382)
....+|.+..++.+.+.+.++.. +.+.++|++|+||||+|+.+++.+... ...|... +.++.....+.. ...
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD-DIR 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH-HHH
Confidence 33467888889999999887654 588999999999999999998873110 1112211 111111111111 122
Q ss_pred HHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------cc
Q 045887 204 EIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SM 255 (382)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~ 255 (382)
.++..+...+ ..+ ++-++++|++ ... .+|++|. ..
T Consensus 95 ~l~~~~~~~p----------------~~~-~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 95 NLIDQVRIPP----------------QTG-KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHhhcc----------------ccC-CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 2222221100 112 4456778876 123 4444443 22
Q ss_pred CceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 256 GCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 256 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
.+..+++++++.++....+...+...+...+ .+.+..++..++|.+-
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHH
Confidence 3457899999999999888877654332122 4677788888888665
No 73
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.20 E-value=1.5e-05 Score=84.13 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=84.1
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhccc--CCC-CceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEET--NEF-SDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
+.+||+++++++++.|.....+-+.++|.+|+|||++|..++..+.... ... +..+|. + +...++
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~------- 247 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL------- 247 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-------
Confidence 3789999999999999877666778999999999999999988842111 111 234442 1 111111
Q ss_pred CCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------------------CCC--eEEEecc-----------
Q 045887 210 KLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------------------DNH--MFCWGLR----------- 253 (382)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------------------~~g--~iivTtR----------- 253 (382)
... ......++....+.+.+...++.+|++|++ ..| ++|.+|.
T Consensus 248 ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 248 AGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred ccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcC
Confidence 111 111234445555555555447899999998 234 5555554
Q ss_pred ---ccCceeeecCCCChHHHHHHHHHh
Q 045887 254 ---SMGCEEVIVPPLSKEEALNLFLDK 277 (382)
Q Consensus 254 ---~~~~~~~~l~~L~~~ea~~Lf~~~ 277 (382)
......+.++..+.++...++...
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 111246788899999988887653
No 74
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.19 E-value=3.3e-05 Score=74.54 Aligned_cols=145 Identities=16% Similarity=0.218 Sum_probs=83.3
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|+++.+++|.+.+. . ...+-|.++|++|+|||++|+.+++. .... |+.++. .+
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~---~~~~-----~i~v~~----~~ 200 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNAT-----FIRVVG----SE 200 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH---hCCC-----EEEeeh----HH
Confidence 5688888888877552 1 23467999999999999999999987 2222 222211 11
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
+.... . .........+.+......+.+|+||++ ..+
T Consensus 201 l~~~~---~-------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 201 LVQKF---I-------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HhHhh---c-------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 11100 0 001112222233222224566666665 124
Q ss_pred -eEEEecc----------ccC--ceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 247 -MFCWGLR----------SMG--CEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 247 -~iivTtR----------~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
.||.||. ..+ ...+++++.+.++-.++|+.++.......... ...+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 6777776 111 14679999999999999998764432212222 345667776654
No 75
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=4.7e-05 Score=74.62 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=101.2
Q ss_pred HHHHHhcCC-CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHH
Q 045887 143 KVWEDLMGD-KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKV 220 (382)
Q Consensus 143 ~l~~~l~~~-~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 220 (382)
...+...++ ...-+.|+|.+|+|||+|++.+++.+. ..+.. .++|++. .++...+...+... +.
T Consensus 119 ~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~- 184 (440)
T PRK14088 119 AALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL- 184 (440)
T ss_pred HHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH-
Confidence 334444333 245699999999999999999999832 22222 3567653 34556665555321 11
Q ss_pred HHHHHHHHHHhCCCeEEEEEEcC---------------------CCC-eEEEecc---------------ccC-ceeeec
Q 045887 221 RRARRLLGKLKVKKKFVLILDYI---------------------DNH-MFCWGLR---------------SMG-CEEVIV 262 (382)
Q Consensus 221 ~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g-~iivTtR---------------~~~-~~~~~l 262 (382)
..+.+.+.. +.-+|++||+ ..| .|++||. ... ...+.+
T Consensus 185 ---~~f~~~~~~-~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 185 ---NEFREKYRK-KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred ---HHHHHHHHh-cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 123333333 4568999999 346 7888885 111 236689
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh------hhcC-CCChhHHHHHHHHH
Q 045887 263 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG------CMRG-VDEIHEWRNALNEL 330 (382)
Q Consensus 263 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~------~L~~-~~~~~~w~~~l~~l 330 (382)
++.+.+.-..++.+.+....... .++...-|++.+.|..-.+.-+-. .+.+ .-+.+...+++..+
T Consensus 261 ~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999988875433222 246778888888876443332221 1122 25566666666654
No 76
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.6e-05 Score=73.26 Aligned_cols=172 Identities=14% Similarity=0.208 Sum_probs=94.4
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEE-eCCCCCHHHHHHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVT-VSQPLDLVKLQAEIATA 208 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~ 208 (382)
....+|-+..++.|..++.++.+ +.+.++|+.|+||||+|..+++.+ .....+....|.. ...++..-...+.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 34467878888888888887765 458899999999999999998873 1111111111110 01111111122222211
Q ss_pred hCCC-----CCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEE-ecc------
Q 045887 209 LKLS-----PTKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCW-GLR------ 253 (382)
Q Consensus 209 l~~~-----~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iiv-TtR------ 253 (382)
.... ....... +.+..+.+.+.. +++-++|+|++ .+. .+|+ |++
T Consensus 94 ~~~n~~~~~~~~~~~i-d~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSV-DDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCH-HHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 0000 0000111 222233333321 25568888888 234 4444 444
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
...+..+++.+++.++....+...+-..+. .-..+.+..|+..++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 112356789999999998888776533221 112467788999999977543
No 77
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=0.0001 Score=74.64 Aligned_cols=174 Identities=10% Similarity=0.135 Sum_probs=100.0
Q ss_pred ccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCC--ceEEEEeCCCCCHHHHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFS--DVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i 205 (382)
......+|.+..++.|.+.+..+.. +.+.++|+.|+||||+|+.+++.+. ...... ...+- .+..-..++.|
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccc----cCcccHHHHHH
Confidence 3344478889999999999887764 5789999999999999999988731 111000 00000 01111122222
Q ss_pred HHHhCCC-----CCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEE-ecc---
Q 045887 206 ATALKLS-----PTKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCW-GLR--- 253 (382)
Q Consensus 206 ~~~l~~~-----~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iiv-TtR--- 253 (382)
...-... .......+ .++.+.+.+.. .++-++|+|++ ..+ .+|+ |+.
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd-~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVD-DIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred hcCCCCceEEecccccCCHH-HHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2211110 00011111 22233333321 24557899988 233 5544 444
Q ss_pred -----ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 254 -----SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 254 -----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
...|..+++.+++.++....+.+.+-..+... ..+....|+..++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 23457789999999999999888764433211 23667889999999986554433
No 78
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=6e-05 Score=75.44 Aligned_cols=153 Identities=14% Similarity=0.210 Sum_probs=91.1
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccC-------------------CCCceEEE
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETN-------------------EFSDVIWV 190 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv 190 (382)
....+|-+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++.+. ... .|...+++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 34467888888889888887765 4678999999999999999988731 100 11112223
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------------C-CC-eEEE-
Q 045887 191 TVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------------D-NH-MFCW- 250 (382)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------------~-~g-~iiv- 250 (382)
+.+....... .++++....... .. +++-++|+|++ . .. .+|+
T Consensus 94 ~~~~~~~vd~-ir~l~~~~~~~p----------------~~-~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 94 DAASNTQVDA-MRELLDNAQYAP----------------TR-GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred eccccCCHHH-HHHHHHHHhhCc----------------cc-CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 2221111111 112222111100 01 25668888988 2 23 4444
Q ss_pred ecc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 251 GLR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 251 TtR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
||. ...|..+++.+++.++....+.+.+...+. .-.++....|++.++|.+-
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMR 215 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 444 122467899999999999888776543321 1123556789999999775
No 79
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.16 E-value=5.7e-05 Score=73.54 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=97.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
...+.|+|.+|+|||+|++.+++.+.+. ..-..++|++. .++...+...+... . ...+.+.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHHh
Confidence 3568999999999999999999984221 11123556643 33444555444321 1 1223333432
Q ss_pred CCeEEEEEEcC---------------------CCC-eEEEecc---------------ccC-ceeeecCCCChHHHHHHH
Q 045887 233 KKKFVLILDYI---------------------DNH-MFCWGLR---------------SMG-CEEVIVPPLSKEEALNLF 274 (382)
Q Consensus 233 ~kr~LlVlDdv---------------------~~g-~iivTtR---------------~~~-~~~~~l~~L~~~ea~~Lf 274 (382)
.-+|+|||+ ..| .+++||. .+. ...+++++.+.++-..++
T Consensus 200 --~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 200 --VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred --CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 348889999 356 7888886 111 235789999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH----Hh---hhcCCCChhHHHHHHHHH
Q 045887 275 LDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV----VG---CMRGVDEIHEWRNALNEL 330 (382)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~----~~---~L~~~~~~~~w~~~l~~l 330 (382)
.+.+...+... .++...-|++.+.|.+-.+.-+ .. .....-+.+....++...
T Consensus 278 ~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 278 QKKAEEEGLEL---PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 98875543222 2567788999988876644332 21 112225566777777664
No 80
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00019 Score=72.37 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=96.4
Q ss_pred cccCchHHHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhC
Q 045887 132 TSRRNTKKIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
...+|-+..++.|...+.++. .+.+.++|+.|+||||+|+.+++.+. .....+. ..++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 345676777777888887765 47888999999999999999998831 1111100 00111111111111100
Q ss_pred CC-----CCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEEEecc---------
Q 045887 211 LS-----PTKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFCWGLR--------- 253 (382)
Q Consensus 211 ~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~iivTtR--------- 253 (382)
.. .......+ .+..+.+.+. .+++-++|+|++ ... .+|++|.
T Consensus 88 pDv~eId~a~~~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 00 00000111 1112222221 125668999988 233 4555444
Q ss_pred ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHHHhhh
Q 045887 254 SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTVVGCM 314 (382)
Q Consensus 254 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~~~~L 314 (382)
...+..|++++++.++....+...+...+.. -..+.+..|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2235678999999999998888766443221 12466788999999965 6776665443
No 81
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.14 E-value=5.7e-05 Score=74.54 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=97.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCC--CceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEF--SDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
...+.|+|.+|+|||+|++.+++.+ ...+ ..++|++. .++...+...+... . ...+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI---LEKNPNAKVVYVTS------EKFTNDFVNALRNN-----T----MEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH---HHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----c----HHHHHHHH
Confidence 3568999999999999999999983 2222 23456653 23344444444221 1 12333344
Q ss_pred hCCCeEEEEEEcC---------------------CCC-eEEEecc---------------ccC-ceeeecCCCChHHHHH
Q 045887 231 KVKKKFVLILDYI---------------------DNH-MFCWGLR---------------SMG-CEEVIVPPLSKEEALN 272 (382)
Q Consensus 231 ~~~kr~LlVlDdv---------------------~~g-~iivTtR---------------~~~-~~~~~l~~L~~~ea~~ 272 (382)
. +.-+|+|||+ ..| .+++||. ... ...+++++++.++-..
T Consensus 210 ~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 210 R--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred h--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 3 3448889999 356 7888886 111 2467899999999999
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH----Hhh---hcCCCChhHHHHHHHHH
Q 045887 273 LFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV----VGC---MRGVDEIHEWRNALNEL 330 (382)
Q Consensus 273 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~----~~~---L~~~~~~~~w~~~l~~l 330 (382)
++.+.+...+... .++...-|++.++|..-.+.-+ ..+ ....-+....+.++..+
T Consensus 288 il~~~~~~~~~~l---~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 288 ILKKKAEEEGIDL---PDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9999875432212 2467788999988876643322 221 12225677777777765
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.00014 Score=73.25 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=91.7
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|.+..++.|.+++.++.+ +.+.++|+.|+||||+|+.+++.+. .....+ + .+++.-...+.|...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~---~----~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPT---A----TPCGVCESCVALAPN 82 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCC---C----CcccccHHHHHhhcc
Confidence 344467888888999999888765 4578999999999999999988731 001110 0 000100111111110
Q ss_pred hCC-------CCCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC-----------------C-CC-eE-EEecc----
Q 045887 209 LKL-------SPTKDEDKVRRARRLLGKLK----VKKKFVLILDYI-----------------D-NH-MF-CWGLR---- 253 (382)
Q Consensus 209 l~~-------~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv-----------------~-~g-~i-ivTtR---- 253 (382)
-+. ........ +....+.+.+. .+++-++|+|++ . .. .+ ++||.
T Consensus 83 ~~~~~dvieidaas~~gv-d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 83 GPGSIDVVELDAASHGGV-DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred cCCCceEEEeccccccCH-HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 000 00000011 11112222111 125568899998 2 33 44 44544
Q ss_pred ----ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 254 ----SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 254 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
...+..+++.+++.++..+.+.+.+...+... ..+....|++.++|.+-
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 23357889999999999888877654433211 23556778888999774
No 83
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=0.00011 Score=77.01 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=90.5
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCC---------------------ceE
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFS---------------------DVI 188 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~---------------------~~~ 188 (382)
....+|.+..++.|..++.++.+ +.+.++|..|+||||+|+.+++.+. ..+... .++
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 33467878888889999887765 5689999999999999999988841 111110 011
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH-HHhCCCeEEEEEEcC------------------CCC-eE
Q 045887 189 WVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLG-KLKVKKKFVLILDYI------------------DNH-MF 248 (382)
Q Consensus 189 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~kr~LlVlDdv------------------~~g-~i 248 (382)
+++......+.++ +++ ...+.. -..+ +.-++|||++ ... .+
T Consensus 93 eidaas~~~Vd~i-R~l-----------------~~~~~~~p~~~-~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 93 EIDAASHGGVDDA-REL-----------------RERAFFAPAES-RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred EecccccCCHHHH-HHH-----------------HHHHHhchhcC-CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 2221111111111 111 111111 1122 5557888888 233 44
Q ss_pred EE-ecc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 249 CW-GLR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 249 iv-TtR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
|+ |+. ...|..|++.+++.++..+.+.+.+-..+.. -..+....|++.++|.+..+
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 44 443 2345788999999999988887765332221 12345677899999988433
No 84
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=0.00033 Score=70.29 Aligned_cols=157 Identities=13% Similarity=0.189 Sum_probs=94.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVK 233 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 233 (382)
..+.|+|..|+|||.|++.+++........ -.++|++ ..++...+...+... ....+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yit------aeef~~el~~al~~~---------~~~~f~~~y~-- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVS------SEEFTNEFINSIRDG---------KGDSFRRRYR-- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEee------HHHHHHHHHHHHHhc---------cHHHHHHHhh--
Confidence 458999999999999999999983211112 2355665 334444554443221 1122333333
Q ss_pred CeEEEEEEcC---------------------CCC-eEEEecc---------------ccCc-eeeecCCCChHHHHHHHH
Q 045887 234 KKFVLILDYI---------------------DNH-MFCWGLR---------------SMGC-EEVIVPPLSKEEALNLFL 275 (382)
Q Consensus 234 kr~LlVlDdv---------------------~~g-~iivTtR---------------~~~~-~~~~l~~L~~~ea~~Lf~ 275 (382)
+-=+|||||+ ..| .||+||. .+.. -.++|.+.+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 2458889999 456 8999988 1222 457999999999999999
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhh------cC-CCChhHHHHHHHHHh
Q 045887 276 DKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM------RG-VDEIHEWRNALNELR 331 (382)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L------~~-~~~~~~w~~~l~~l~ 331 (382)
+.+.......+ ++++.-|++.+.+..-.|.-+-..| .+ .-+...-+.++..+.
T Consensus 457 kka~~r~l~l~---~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~ 516 (617)
T PRK14086 457 KKAVQEQLNAP---PEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 88755433222 4667777777776544433322211 22 245555566666543
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.11 E-value=0.00013 Score=68.45 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=38.9
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....+|.+...+.+.+++..+.. .++.++|++|+||||+|+.+++.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 344477888989999999887654 56777999999999999999887
No 86
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=8.7e-05 Score=75.47 Aligned_cols=170 Identities=13% Similarity=0.176 Sum_probs=97.1
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|-+..++.|..++.++.. +.+.++|..|+||||+|+.+++.+. ...... -...++.-..++.|...
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcC
Confidence 334477888888888888887654 5678999999999999999988731 000000 00111112223333222
Q ss_pred hCCC-----CCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEEecc-------
Q 045887 209 LKLS-----PTKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCWGLR------- 253 (382)
Q Consensus 209 l~~~-----~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iivTtR------- 253 (382)
.... .......+ ....+.+.+.. .++-++|+|++ ... .+|++|.
T Consensus 87 ~~~d~~~i~~~~~~~vd-~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 87 SAVDVIEMDAASHTSVD-DAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCeEEEEeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 1110 00011111 12222222221 25668889988 223 4444443
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
...+..+++.+++.++....+.+.+...+... ..+.+..|++.++|.+..+...
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22346778999999999888887765433211 2466788999999988654443
No 87
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.09 E-value=2.4e-05 Score=75.46 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=52.2
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHH
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 203 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 203 (382)
.++.+..++.+...+... +.+.++|++|+|||++|+.+++.+ .....|+.+.||++++..+..+++.
T Consensus 177 ~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 177 LFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred ccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 455678888888888754 577889999999999999999883 2334677788999998877666543
No 88
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.09 E-value=3.1e-05 Score=75.24 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=33.1
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|.+..+++|.+.+. + ...+-+.++|++|+|||++|+.+++.
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4577777777766552 1 13457889999999999999999998
No 89
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=0.00037 Score=68.29 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=81.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
..-+.|+|..|+|||+|++.+++.+.. ....+++++ ...+...+...+... . ...+.+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-
Confidence 356889999999999999999998422 223355665 234444555444321 1 122333332
Q ss_pred CCeEEEEEEcC---------------------CCC-eEEEecc---------------ccC-ceeeecCCCChHHHHHHH
Q 045887 233 KKKFVLILDYI---------------------DNH-MFCWGLR---------------SMG-CEEVIVPPLSKEEALNLF 274 (382)
Q Consensus 233 ~kr~LlVlDdv---------------------~~g-~iivTtR---------------~~~-~~~~~l~~L~~~ea~~Lf 274 (382)
..-+|++||+ ..| .||+||. ++. ...+.+.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 4558888998 356 8888885 121 246789999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 275 LDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
.+.+-..+...+ ++...-|+..+.|.-
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 888754332122 455566777766543
No 90
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00025 Score=70.50 Aligned_cols=159 Identities=12% Similarity=0.126 Sum_probs=93.4
Q ss_pred ccccCchHHHHHHHHHHhcCCCce-EEEEEeCCCCcHHHHHHHHHhchhc-ccCC----------------CC-ceEEEE
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKVT-KIGVWGMGGIGKTAIMRHINNRPQE-ETNE----------------FS-DVIWVT 191 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~~-vv~I~G~gGvGKTtLa~~v~~~~~~-~~~~----------------f~-~~~wv~ 191 (382)
....+|-+...+.|...+.++..+ ...++|+.|+||||+|+.+++.+.- .... +. .++.++
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 334677788888888888877654 6689999999999999998877310 0000 10 112222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEec
Q 045887 192 VSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGL 252 (382)
Q Consensus 192 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTt 252 (382)
.+.......+ ++++......+ ..+ ++-++|+|++ .+. .+|++|
T Consensus 93 aas~~gId~I-Relie~~~~~P----------------~~~-~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 93 AASNRGIDDI-RELIEQTKYKP----------------SMA-RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccccCHHHH-HHHHHHHhhCc----------------ccC-CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 1111112111 11111110000 012 5567888888 233 555554
Q ss_pred c---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 253 R---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 253 R---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
. ...+..+++.+++.++....+.+.+...+.. -.++.+..|++.++|.+--+..+
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 4 2335788999999999998888765443321 12467788999999988544433
No 91
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.08 E-value=0.0004 Score=66.24 Aligned_cols=178 Identities=15% Similarity=0.198 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHH-HHHHhchhcccCCCCceEEEEeCCC---CCHHHHHHHHHHHhCCC
Q 045887 137 TKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIM-RHINNRPQEETNEFSDVIWVTVSQP---LDLVKLQAEIATALKLS 212 (382)
Q Consensus 137 r~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 212 (382)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++.++ .+ .++.+++.+- .+-..++..++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~-r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD-RK------NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC-CC------CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 4677899999999988899999999999999999 777555 11 1666665432 23344555555554321
Q ss_pred C------------------------CCCchHHHHHHHHHHH----Hh-----------------------C--CCeEEEE
Q 045887 213 P------------------------TKDEDKVRRARRLLGK----LK-----------------------V--KKKFVLI 239 (382)
Q Consensus 213 ~------------------------~~~~~~~~~~~~l~~~----l~-----------------------~--~kr~LlV 239 (382)
+ .=.++.+.....+.+. |+ . ..+=++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 0 0012222222111110 00 0 1367999
Q ss_pred EEcC----------------------CCC--eEEEecc----------cc---CceeeecCCCChHHHHHHHHHhhcCCC
Q 045887 240 LDYI----------------------DNH--MFCWGLR----------SM---GCEEVIVPPLSKEEALNLFLDKVGRNI 282 (382)
Q Consensus 240 lDdv----------------------~~g--~iivTtR----------~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 282 (382)
+||+ .++ +||++|- .. ....+.|.-.+++.|..+...+.....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 9999 333 8888776 11 225778999999999999998875431
Q ss_pred CC-------------C----CCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChh
Q 045887 283 LH-------------V----PTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIH 321 (382)
Q Consensus 283 ~~-------------~----~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~ 321 (382)
.. . ...........+..+||--.=+..+++.++...++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 10 0 023455667889999999999999999998875543
No 92
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00033 Score=69.39 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=92.5
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccC------------------CCCceEEEE
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETN------------------EFSDVIWVT 191 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~ 191 (382)
....+|-+.....|.+++..+.+ +...++|+.|+||||+|+.++..+.-... .|...++++
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 34467888888999999887654 56778999999999999999887310000 011122222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC-----------------C-CC-eE
Q 045887 192 VSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI-----------------D-NH-MF 248 (382)
Q Consensus 192 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv-----------------~-~g-~i 248 (382)
.+...... ..+.+.+.... +++-++|+|++ . +. .+
T Consensus 95 aas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 95 AASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred CccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111111 11122222211 25668899988 2 23 44
Q ss_pred -EEecc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 249 -CWGLR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 249 -ivTtR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
+.|++ ...+..+.+.+++.++....+...+-..+.. -..+.+..|+..++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44544 2234678999999999988888765433221 12356677889999977644433
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00022 Score=72.56 Aligned_cols=154 Identities=12% Similarity=0.166 Sum_probs=92.2
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchh--------------------cccCCCCceEE
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQ--------------------EETNEFSDVIW 189 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~--------------------~~~~~f~~~~w 189 (382)
....+|-+...+.|..++..+.. +.+.++|+.|+||||+|+.++..+. ....+|+ +..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEE
Confidence 34467888888999999888765 5688999999999999999888631 0011222 122
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEE-
Q 045887 190 VTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFC- 249 (382)
Q Consensus 190 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~ii- 249 (382)
++.+...+..+ .+.++.++.... .. +++=++|+|++ ..+ .+|
T Consensus 95 ld~~~~~~vd~-Ir~li~~~~~~P----------------~~-~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 95 LDAASNNSVDD-IRNLIEQVRIPP----------------QI-GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred ecccccCCHHH-HHHHHHHHhhCc----------------cc-CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 22222211211 112222221100 01 24557788887 233 444
Q ss_pred Eecc--------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 045887 250 WGLR--------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 250 vTtR--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
+|+. ...|..+++.+++.++....+.+.+...+... ..+.+..|+..++|-.--
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRD 218 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 4444 23456789999999999988887664433211 135677889999986643
No 94
>PRK08116 hypothetical protein; Validated
Probab=98.07 E-value=8.4e-05 Score=67.93 Aligned_cols=73 Identities=32% Similarity=0.397 Sum_probs=45.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVK 233 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 233 (382)
..+.++|.+|+|||.||..+++.+.. . ...++|++ ..+++..+......... .+ ...+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~-~~~v~~~~------~~~ll~~i~~~~~~~~~--~~----~~~~~~~l~~- 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--K-GVPVIFVN------FPQLLNRIKSTYKSSGK--ED----ENEIIRSLVN- 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--c-CCeEEEEE------HHHHHHHHHHHHhcccc--cc----HHHHHHHhcC-
Confidence 45899999999999999999999422 2 23356665 34455666554432211 11 2223444443
Q ss_pred CeEEEEEEcC
Q 045887 234 KKFVLILDYI 243 (382)
Q Consensus 234 kr~LlVlDdv 243 (382)
- =||||||+
T Consensus 179 ~-dlLviDDl 187 (268)
T PRK08116 179 A-DLLILDDL 187 (268)
T ss_pred C-CEEEEecc
Confidence 2 38999998
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.07 E-value=8.8e-05 Score=77.00 Aligned_cols=132 Identities=18% Similarity=0.161 Sum_probs=82.4
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCC---CCceEEEEeCCCCCHHHHHHHHHHHhC
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNE---FSDVIWVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
.+||+.++.++++.|......-+.++|.+|+|||++|+.+++.+....-. .++.+|.. +...+ +. +
T Consensus 188 liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G 256 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--G 256 (758)
T ss_pred CcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--c
Confidence 78999999999998887655666789999999999999998873221111 13344421 11111 10 0
Q ss_pred CCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------------CCC--eEEEecc-----------
Q 045887 211 LSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------------DNH--MFCWGLR----------- 253 (382)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------------~~g--~iivTtR----------- 253 (382)
.. ...+.+.....+.+.+...++.+|++|++ ..| ++|-+|.
T Consensus 257 ~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D 334 (758)
T PRK11034 257 TK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_pred cc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhcc
Confidence 00 01123334444544444336778889988 334 4555544
Q ss_pred ---ccCceeeecCCCChHHHHHHHHHhh
Q 045887 254 ---SMGCEEVIVPPLSKEEALNLFLDKV 278 (382)
Q Consensus 254 ---~~~~~~~~l~~L~~~ea~~Lf~~~a 278 (382)
......+.+++++.+++.+++....
T Consensus 335 ~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 335 RALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0112578999999999999998654
No 96
>PRK06620 hypothetical protein; Validated
Probab=98.05 E-value=6.9e-05 Score=66.13 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVK 233 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 233 (382)
+.+.|+|++|+|||+|++.+++. ... .++. ...... +...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~---~~~-----~~~~--~~~~~~----------------------------~~~~-- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL---SNA-----YIIK--DIFFNE----------------------------EILE-- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc---cCC-----EEcc--hhhhch----------------------------hHHh--
Confidence 67999999999999999998777 211 1221 000000 0111
Q ss_pred CeEEEEEEcC----------------CCC-eEEEecc-------------ccC-ceeeecCCCChHHHHHHHHHhhcCCC
Q 045887 234 KKFVLILDYI----------------DNH-MFCWGLR-------------SMG-CEEVIVPPLSKEEALNLFLDKVGRNI 282 (382)
Q Consensus 234 kr~LlVlDdv----------------~~g-~iivTtR-------------~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~ 282 (382)
..-+|++||+ .+| .+++|++ +.. +-.+++++++.++-..++.+.+...+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 2345677777 456 7888887 111 23578888888887777777654322
Q ss_pred CCCCCchHHHHHHHHHHcCCchhH
Q 045887 283 LHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 283 ~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
... .+++..-|++.+.|---.
T Consensus 165 l~l---~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 165 VTI---SRQIIDFLLVNLPREYSK 185 (214)
T ss_pred CCC---CHHHHHHHHHHccCCHHH
Confidence 111 245566666666654433
No 97
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00026 Score=72.39 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=91.2
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH-
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT- 207 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~- 207 (382)
.....+|-+..++.|..++..+.+ +.+.++|+.|+||||+|+.+++.+ ...+.. ..+-.+. . +.....
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L--nC~~~~-~~~~pC~------~-C~~~~~~ 85 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL--NCSHKT-DLLEPCQ------E-CIENVNN 85 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh--cccccC-CCCCchh------H-HHHhhcC
Confidence 334467888888889998887664 567899999999999999998873 111100 0000000 0 000000
Q ss_pred HhC---CCCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC-----------------CCC--e-EEEecc-------
Q 045887 208 ALK---LSPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI-----------------DNH--M-FCWGLR------- 253 (382)
Q Consensus 208 ~l~---~~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv-----------------~~g--~-iivTtR------- 253 (382)
... ........ .+.++.+.+.+.. +++-++|+|++ .++ . |++|+.
T Consensus 86 ~~Dvieidaasn~~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDIIEMDAASNNG-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEEEEeccccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000 00000001 1112223333221 25668899998 233 3 444554
Q ss_pred -ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 254 -SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 254 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
...|..+++.+++.++....+...+...+... ..+.+..|++.++|-+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR 214 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLR 214 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 23357889999999999988887654332211 13557789999988664
No 98
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.00035 Score=66.68 Aligned_cols=148 Identities=14% Similarity=0.209 Sum_probs=98.7
Q ss_pred cccCchHHHHHHHHHHhcC----CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 132 TSRRNTKKIVKKVWEDLMG----DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~----~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
+..+||+.++..+.+++.. +...-+-|.|-+|.|||.+...++.++...... ..++++++..-.....++..|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHH
Confidence 3478999999999888764 356789999999999999999999884322222 24577777665566777777777
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHhCCC-eEEEEEEcC-------------------CCC-eEEEec---------c----
Q 045887 208 ALKLSPTKDEDKVRRARRLLGKLKVKK-KFVLILDYI-------------------DNH-MFCWGL---------R---- 253 (382)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv-------------------~~g-~iivTt---------R---- 253 (382)
.+-.......+..+....+.+...+.+ -+|+|||.. -++ ++++.- |
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence 762211111222455566666666534 789999988 122 222211 1
Q ss_pred ---ccCc--eeeecCCCChHHHHHHHHHhhcC
Q 045887 254 ---SMGC--EEVIVPPLSKEEALNLFLDKVGR 280 (382)
Q Consensus 254 ---~~~~--~~~~l~~L~~~ea~~Lf~~~a~~ 280 (382)
..++ ..+..+|.+.++-.++|..+...
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 1122 45688999999999999988644
No 99
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00073 Score=59.80 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=102.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe-CCCCCHHHHHHHHHHHhCCCCCCC--chHHHHHHHH
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV-SQPLDLVKLQAEIATALKLSPTKD--EDKVRRARRL 226 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l 226 (382)
.++-.++.++|.-|.|||.+++.....+ .+. .++-+.+ ....+...+...|+..+....... .-.......+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~---~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL---NED--QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc---CCC--ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 4455799999999999999999655542 111 1222333 334567788888888887722211 1233444555
Q ss_pred HHHHhCCCe-EEEEEEcC--------------------CCC--eEEEecc---------------ccCcee-eecCCCCh
Q 045887 227 LGKLKVKKK-FVLILDYI--------------------DNH--MFCWGLR---------------SMGCEE-VIVPPLSK 267 (382)
Q Consensus 227 ~~~l~~~kr-~LlVlDdv--------------------~~g--~iivTtR---------------~~~~~~-~~l~~L~~ 267 (382)
....+.++| ..++.|+. ..+ +|+..-. ...+.. |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 555555577 89999988 222 3444433 112333 89999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 268 EEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 268 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
++...++.....+.....+--..+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999988876554323333356678899999999999987764
No 100
>PRK08181 transposase; Validated
Probab=98.01 E-value=0.00033 Score=63.88 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=45.7
Q ss_pred HHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHH
Q 045887 146 EDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARR 225 (382)
Q Consensus 146 ~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 225 (382)
+|+.. ..-+.++|++|+|||.||..+++.. ......+.|++ ..+++..+..... ..+.. .
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~----~ 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTR------TTDLVQKLQVARR-----ELQLE----S 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeee------HHHHHHHHHHHHh-----CCcHH----H
Confidence 46543 3569999999999999999999873 22222356664 3445555543221 11111 2
Q ss_pred HHHHHhCCCeEEEEEEcC
Q 045887 226 LLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 226 l~~~l~~~kr~LlVlDdv 243 (382)
..+.+. +.=|||+||+
T Consensus 161 ~l~~l~--~~dLLIIDDl 176 (269)
T PRK08181 161 AIAKLD--KFDLLILDDL 176 (269)
T ss_pred HHHHHh--cCCEEEEecc
Confidence 223333 4559999998
No 101
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.01 E-value=0.00015 Score=76.88 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=81.2
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcc--cCC-CCceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEE--TNE-FSDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~--~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
+.+||+.++.++++.|.......+.++|.+|+|||++|..+++++..- ... ....+|.- ++..+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a------ 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA------ 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh------
Confidence 479999999999999987766677799999999999999998883110 000 12223321 1111110
Q ss_pred CCCCCCCchHHHHHHHHHHHHhC-CCeEEEEEEcC-----------------------CCC--eEEEecc----------
Q 045887 210 KLSPTKDEDKVRRARRLLGKLKV-KKKFVLILDYI-----------------------DNH--MFCWGLR---------- 253 (382)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv-----------------------~~g--~iivTtR---------- 253 (382)
+. ....+.+.....+.+.+.. +++.+|++|++ ..| .+|-+|.
T Consensus 243 ~~--~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~ 320 (852)
T TIGR03346 243 GA--KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEK 320 (852)
T ss_pred cc--hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhc
Confidence 00 0011233344444444432 36899999998 123 4444443
Q ss_pred ----ccCceeeecCCCChHHHHHHHHHhh
Q 045887 254 ----SMGCEEVIVPPLSKEEALNLFLDKV 278 (382)
Q Consensus 254 ----~~~~~~~~l~~L~~~ea~~Lf~~~a 278 (382)
......+.++..+.++...++....
T Consensus 321 d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 321 DAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 0112457899999999999887653
No 102
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00044 Score=70.23 Aligned_cols=171 Identities=14% Similarity=0.215 Sum_probs=93.7
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEE-eCCCCCHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVT-VSQPLDLVKLQAEIAT 207 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~ 207 (382)
.....+|-+..+..|.+.+.++.+ +.+.++|+.|+||||+|+.+++.+ ......+...|.. ....++.-..++.+..
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 334467888888888888887765 568899999999999999998873 1111111011111 0011111112222211
Q ss_pred HhCCC-----CCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC-----------------C-CC-eEE-Eecc-----
Q 045887 208 ALKLS-----PTKDEDKVRRARRLLGKLK----VKKKFVLILDYI-----------------D-NH-MFC-WGLR----- 253 (382)
Q Consensus 208 ~l~~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv-----------------~-~g-~ii-vTtR----- 253 (382)
.-... .......+ .+..+.+.+. .+++-++|+|++ . .. .+| +|++
T Consensus 93 g~~~n~~~~d~~s~~~vd-~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 93 GTSLNISEFDAASNNSVD-DIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred cCCCCeEEecccccCCHH-HHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 10000 00001111 2222333331 125557889988 2 23 444 4544
Q ss_pred ---ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 254 ---SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 254 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
...+..+++.+++.++....+.+.+...+... ..+.+..|+..++|.+-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHH
Confidence 23356789999999998888877654322111 24667889999999554
No 103
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00051 Score=67.56 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=90.4
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhccc--------------------CCCCceEE
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEET--------------------NEFSDVIW 189 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~--------------------~~f~~~~w 189 (382)
....+|.+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++.+.-.. .+++ .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 34467888889999999887765 6788999999999999999988731100 0111 111
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEE
Q 045887 190 VTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCW 250 (382)
Q Consensus 190 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iiv 250 (382)
+.......... .+.+.+.+.. ....+ ++-++|+|++ ..+ .+|+
T Consensus 95 i~g~~~~gid~-ir~i~~~l~~----------------~~~~~-~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 95 IDGASHRGIED-IRQINETVLF----------------TPSKS-RYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eeccccCCHHH-HHHHHHHHHh----------------hhhcC-CCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 11111111111 1111111110 00113 5667888887 223 5555
Q ss_pred ecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 251 GLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 251 TtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
+|. ...+..+++.+++.++....+...+-..+.. -..+.+..|++.++|.+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLR 217 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 543 2235678999999999988887765433211 124567889999999664
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.98 E-value=0.0001 Score=66.58 Aligned_cols=158 Identities=12% Similarity=0.124 Sum_probs=93.9
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceE-EEEeCCCCCHHHHHHHHHHHhC
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVI-WVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
....|-+..+..|.+.+.....+....+|++|.|||+-|+.++..+ .-.+.|.+++ =.++|......-+-..+ +
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki-k--- 110 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI-K--- 110 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-c---
Confidence 3467778888888888888778999999999999999999998873 2235565543 34444432221000000 0
Q ss_pred CCCCCCchHHHHHHHHHHHHhC-CCe-EEEEEEcC------------------CCC-eE-EEecc--------ccCceee
Q 045887 211 LSPTKDEDKVRRARRLLGKLKV-KKK-FVLILDYI------------------DNH-MF-CWGLR--------SMGCEEV 260 (382)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~-~kr-~LlVlDdv------------------~~g-~i-ivTtR--------~~~~~~~ 260 (382)
+.............. .++ -.+|||++ ... ++ +||+- ...|..|
T Consensus 111 -------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 111 -------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred -------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 000000000000000 122 36677776 122 33 33433 3345678
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
..++|..++...-+...+-..+...+ .+..+.|++.++|--
T Consensus 184 rFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 184 RFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred cCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 99999999999999888766544232 456788999998864
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.97 E-value=0.00017 Score=76.37 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=40.4
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+.+||+.++.++++.|.......+.++|.+|+|||+||..++..+
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999987776778899999999999999999883
No 106
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.97 E-value=0.00017 Score=62.66 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=49.6
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCC-CceEEEEeCCCCCHHHH
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEF-SDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~ 201 (382)
.+|-++.++.+.-...+++.+-+.|.||+|+||||-+..+++.+ ....+ +.+.-.+.|....+.-+
T Consensus 29 IVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L--LG~~~ke~vLELNASdeRGIDvV 95 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL--LGDSYKEAVLELNASDERGIDVV 95 (333)
T ss_pred hhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH--hChhhhhHhhhccCccccccHHH
Confidence 56778888888777788899999999999999999999998884 33333 45666666665544433
No 107
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.96 E-value=0.00016 Score=71.55 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.8
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..|.+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++.+
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4567777777766542 1 134668999999999999999999983
No 108
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00059 Score=68.88 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=94.3
Q ss_pred cccccccCchHHHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHH
Q 045887 128 VNNNTSRRNTKKIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 206 (382)
Q Consensus 128 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 206 (382)
|......+|.+...+.|.+++..+. .+.+.++|+.|+||||+|+.+++.+ ...+-.. ..+++.-..+..|.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal--~c~~~~~------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV--NCLNPPD------GEPCNECEICKAIT 83 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCC------CCCCCccHHHHHHh
Confidence 3344557888999999999988765 4567889999999999999998773 1111000 01111111222221
Q ss_pred HHhCCC-----CCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC-----------------C-CC-eEE-Eecc----
Q 045887 207 TALKLS-----PTKDEDKVRRARRLLGKLK----VKKKFVLILDYI-----------------D-NH-MFC-WGLR---- 253 (382)
Q Consensus 207 ~~l~~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv-----------------~-~g-~ii-vTtR---- 253 (382)
...... ...... .+.+..+.+... .++.-++|+|++ . .. .+| .||.
T Consensus 84 ~g~~~dv~eidaas~~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 84 NGSLMDVIEIDAASNNG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred cCCCCCeEEeeccccCC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 111000 000011 111222222221 125668889988 2 23 334 4444
Q ss_pred ----ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 254 ----SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 254 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
...+..+++.+++.++....+...+-..+... ..+.+..|++.++|.+.-+
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 22356788999999999888887764333211 2356777888988877543
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00038 Score=62.44 Aligned_cols=213 Identities=15% Similarity=0.074 Sum_probs=108.7
Q ss_pred ccccCchHHHHHHHHHHhc-----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLM-----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
...|+|.++..++|.=.+. +..+--+.++|++|.||||||.-+++. ....+ -++-+.-..-..-+..|
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E---mgvn~----k~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE---LGVNL----KITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH---hcCCe----EecccccccChhhHHHH
Confidence 3448887777776643332 334677999999999999999999999 33222 12111111111222233
Q ss_pred HHHhCCCCCCCchHHH-----HHHHHHHHHhCCCeEEEEEEcC----------CCC-eEEEecc-cc-------C-ceee
Q 045887 206 ATALKLSPTKDEDKVR-----RARRLLGKLKVKKKFVLILDYI----------DNH-MFCWGLR-SM-------G-CEEV 260 (382)
Q Consensus 206 ~~~l~~~~~~~~~~~~-----~~~~l~~~l~~~kr~LlVlDdv----------~~g-~iivTtR-~~-------~-~~~~ 260 (382)
+..|....---.+.-. ..+.+.-...+ -+.=+++.-= .+= -|=.||| .+ . ....
T Consensus 98 Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMED-f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~ 176 (332)
T COG2255 98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMED-FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQ 176 (332)
T ss_pred HhcCCcCCeEEEehhhhcChhHHHHhhhhhhh-eeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCee
Confidence 3333211000000000 00111111111 1111111110 111 4556888 11 1 1245
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcC------C--CChhHHHHHHHHHhh
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRG------V--DEIHEWRNALNELRG 332 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~------~--~~~~~w~~~l~~l~~ 332 (382)
+++-.+.+|-.+...+.+..-+... .++.+.+|+++..|-|--+.-+-+..+. . -+..--.+++..+.-
T Consensus 177 rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 177 RLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred eeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCc
Confidence 8888999999999888774322212 2467899999999999755544443322 1 223334455555554
Q ss_pred ccccCCCChHhHHHHHHHhHhh
Q 045887 333 LVRSFSGINADVLGRLEFSYRR 354 (382)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~sy~~ 354 (382)
....++..+..+..++.-.|+.
T Consensus 254 d~~GLd~~D~k~L~~li~~f~G 275 (332)
T COG2255 254 DELGLDEIDRKYLRALIEQFGG 275 (332)
T ss_pred ccccccHHHHHHHHHHHHHhCC
Confidence 3344444455666666666643
No 110
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.002 Score=64.81 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=39.1
Q ss_pred cCchHHHHHHHHHHhc------CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCC
Q 045887 134 RRNTKKIVKKVWEDLM------GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEF 184 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~------~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f 184 (382)
+.|-++..++|+++|- .-.-++++++|++|+|||+|++.+++- ....|
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a---l~Rkf 378 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA---LGRKF 378 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH---hCCCE
Confidence 6788888999988873 224589999999999999999999988 44444
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00063 Score=63.96 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=39.7
Q ss_pred eEEEecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 247 MFCWGLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 247 ~iivTtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
.+|++|. ...|..+.+.+++.+++.+.+...... ...+.+..++..++|.|+.+..+
T Consensus 138 ~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 138 VLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred EEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-------CChHHHHHHHHHcCCCHHHHHHH
Confidence 5556665 344678899999999999988765311 11345567889999999865443
No 112
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00076 Score=68.76 Aligned_cols=171 Identities=14% Similarity=0.162 Sum_probs=96.0
Q ss_pred ccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
....+|.+.....|..++..+.. +.+.++|..|+||||+|+.+++.+ .....+... ...+..-..++.+....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L--~c~~~~~~~----~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL--NCLNSDKPT----PEPCGKCELCRAIAAGN 88 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh--cCCCcCCCC----CCCCcccHHHHHHhcCC
Confidence 34467888888888888887654 678899999999999999999884 111111000 01111112223332221
Q ss_pred CCCC----CCCchHHHHHHHHHHHHhC----CCeEEEEEEcC-----------------CCC--eEE-Eecc--------
Q 045887 210 KLSP----TKDEDKVRRARRLLGKLKV----KKKFVLILDYI-----------------DNH--MFC-WGLR-------- 253 (382)
Q Consensus 210 ~~~~----~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv-----------------~~g--~ii-vTtR-------- 253 (382)
.... .......+.++.+.+.+.. +++-++|+|++ .++ .+| +|+.
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1100 0000111222233332221 24568889988 223 334 4443
Q ss_pred ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 254 SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 254 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
...|..+++.+++.++....+...+...+... ..+.+..|++.++|.+..+...
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 23456788999999998887777654332211 1356788999999987654433
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00051 Score=69.68 Aligned_cols=170 Identities=12% Similarity=0.184 Sum_probs=92.5
Q ss_pred ccccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
......+|-+...+.|.+++..+.+ +.+.++|+.|+||||+|+.+++.+. ..+..+. .+++.-..+..|..
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhc
Confidence 3444577888888889998887765 5678999999999999999988731 1111100 00011111111111
Q ss_pred HhCC-----CCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEE-Eecc-----
Q 045887 208 ALKL-----SPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFC-WGLR----- 253 (382)
Q Consensus 208 ~l~~-----~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~ii-vTtR----- 253 (382)
.-.. ........ +.+..+.+.+.. +++-++|+|++ .+. .+| +||.
T Consensus 85 g~~~d~~eid~~s~~~v-~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 85 GRSVDVFEIDGASNTGV-DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCCCCeeeeeccCccCH-HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0000 00000011 112222222221 24557889988 223 444 4544
Q ss_pred ---ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHH
Q 045887 254 ---SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTV 310 (382)
Q Consensus 254 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~ 310 (382)
...|..+++.+++.++....+...+-..+... ..+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22356778999999998888877653332211 2356677888888865 444443
No 114
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.0021 Score=60.07 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=96.6
Q ss_pred cCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcc------------cCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEE------------TNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~~~~~~~~~ 200 (382)
.+|-+...+.+...+.++.+ +...++|+.|+||+++|..+++.+.-. ...++...|+.-....+-..
T Consensus 6 iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~ 85 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKL 85 (314)
T ss_pred hCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccc
Confidence 46778888888888888774 899999999999999999988773111 11122234443110000000
Q ss_pred HHHHHHHHhCC--CCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCCeEEEec-c--
Q 045887 201 LQAEIATALKL--SPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNHMFCWGL-R-- 253 (382)
Q Consensus 201 ~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g~iivTt-R-- 253 (382)
+-..-+...+. ........ +.++.+.+.+.. +++-++|+|++ .++.+|++| .
T Consensus 86 ~~~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~ 164 (314)
T PRK07399 86 ITASEAEEAGLKRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPE 164 (314)
T ss_pred cchhhhhhccccccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence 00000111110 00001111 223344444432 35667888887 323444444 4
Q ss_pred ------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 254 ------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 254 ------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
...|..+++.+++.++..+.+.+...... .......++..++|.|..+...
T Consensus 165 ~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 165 SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 34567889999999999999988632111 1112357899999999766543
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.0008 Score=67.83 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=92.6
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.....+|-+..++.|..++.++.. +.+.++|+.|+||||+|+.+++.+.- ...... ..+... ...+.|...
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C----~~C~~i~~~ 85 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGEC----SSCKSIDND 85 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccc----hHHHHHHcC
Confidence 334467878888899999887665 56889999999999999999888411 111000 000000 001111110
Q ss_pred hCC-----CCCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEEEec-c------
Q 045887 209 LKL-----SPTKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFCWGL-R------ 253 (382)
Q Consensus 209 l~~-----~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~iivTt-R------ 253 (382)
-.. ........++ +..+.+.+. .+++-++|+|++ .+. .+|++| .
T Consensus 86 ~~~dv~~idgas~~~vdd-Ir~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQD-VRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCeEEecCcccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 000 0000011111 112221111 125667889988 233 444444 3
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 308 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 308 (382)
...+..+++.+++.++....+...+...+.. -.++.+..|++.++|.+-.+.
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2335678999999999988888776443221 124667779999999875443
No 116
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.89 E-value=0.0003 Score=67.85 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=81.9
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|.+..+++|.+.+. . ...+-+.++|++|+|||+||+.+++. ....| +.+.. ..
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~---l~~~f---i~i~~------s~ 214 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH---TTATF---IRVVG------SE 214 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh---cCCCE---EEEeh------HH
Confidence 5566666666655442 1 13577999999999999999999987 33322 22211 11
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
+.... ++ . .......+........+.+|++|++ ..+
T Consensus 215 l~~k~---~g------e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 215 FVQKY---LG------E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHh---cc------h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11110 00 0 1112223333333336777777775 134
Q ss_pred -eEEEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 247 -MFCWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 247 -~iivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
.||.||. ..+- ..++++..+.++..++|.............+ ..++++.+.|+--
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sg 352 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISA 352 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCH
Confidence 6777877 1111 4578999999998888887654332222222 3456666666543
No 117
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.85 E-value=6.6e-05 Score=64.24 Aligned_cols=72 Identities=29% Similarity=0.418 Sum_probs=42.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
+..-+.++|.+|+|||.||..+++... ...+. +.|++ ..+++..+-..- . ..... .+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~~-v~f~~------~~~L~~~l~~~~----~-~~~~~----~~~~~l~ 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGYS-VLFIT------ASDLLDELKQSR----S-DGSYE----ELLKRLK 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH----C-CTTHC----HHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCcc-eeEee------cCceeccccccc----c-ccchh----hhcCccc
Confidence 346799999999999999999998842 23333 56665 344555543221 1 11111 2333444
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
+-=||||||+
T Consensus 108 --~~dlLilDDl 117 (178)
T PF01695_consen 108 --RVDLLILDDL 117 (178)
T ss_dssp --TSSCEEEETC
T ss_pred --cccEeccccc
Confidence 4568889999
No 118
>PRK12377 putative replication protein; Provisional
Probab=97.85 E-value=0.00012 Score=65.88 Aligned_cols=73 Identities=27% Similarity=0.286 Sum_probs=45.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
+...+.++|.+|+|||+||..+++.+. .....++++++ .+++..|-..... ..+.. .+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~----~~~~~----~~l~~l~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN----GQSGE----KFLQELC 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc----cchHH----HHHHHhc
Confidence 346799999999999999999999842 22333566654 3455544433321 11111 2333343
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
+--||||||+
T Consensus 163 --~~dLLiIDDl 172 (248)
T PRK12377 163 --KVDLLVLDEI 172 (248)
T ss_pred --CCCEEEEcCC
Confidence 5779999998
No 119
>PRK09183 transposase/IS protein; Provisional
Probab=97.84 E-value=0.00056 Score=62.20 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+.|+|++|+|||+||..+++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999999876
No 120
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.84 E-value=8.3e-05 Score=60.06 Aligned_cols=85 Identities=26% Similarity=0.162 Sum_probs=47.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVK 233 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 233 (382)
..+.|+|++|+||||+++.+++.+ ......+++++.+........... ....... ............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999883 222234566655443221111111 1111111 11222333344555555542
Q ss_pred CeEEEEEEcC
Q 045887 234 KKFVLILDYI 243 (382)
Q Consensus 234 kr~LlVlDdv 243 (382)
+..+|++|++
T Consensus 78 ~~~viiiDei 87 (148)
T smart00382 78 KPDVLILDEI 87 (148)
T ss_pred CCCEEEEECC
Confidence 3499999998
No 121
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00051 Score=63.57 Aligned_cols=172 Identities=16% Similarity=0.208 Sum_probs=95.3
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|-++.+++|.+... + +.++=|.+||++|.|||-||++|+++ .... |+.+..+ +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~---T~At-----FIrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ---TDAT-----FIRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc---cCce-----EEEeccH----H
Confidence 3466777777766653 2 24678999999999999999999998 3333 4443321 1
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
+.+..+ | .-..++..+++.-+.+.++.|.+|.+ ...
T Consensus 221 lVqKYi---G-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQKYI---G-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHHh---c-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 211111 0 11223444444444445555555555 233
Q ss_pred -eEEEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh----HHHH
Q 045887 247 -MFCWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL----AIFT 309 (382)
Q Consensus 247 -~iivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL----al~~ 309 (382)
|||..|. ..|- ..|+++.-+.+.-.++|.-++..-....+-+++ .+++.|.|.-= |+.+
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaict 366 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICT 366 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHH
Confidence 8888886 2232 467888555555567776665433322333444 46666666543 3444
Q ss_pred HHhhh--cCC---CChhHHHHHHHHHh
Q 045887 310 VVGCM--RGV---DEIHEWRNALNELR 331 (382)
Q Consensus 310 ~~~~L--~~~---~~~~~w~~~l~~l~ 331 (382)
=|+++ +.. -+.+.+..+.+...
T Consensus 367 EAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 367 EAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 45554 332 34555665555543
No 122
>PRK06526 transposase; Provisional
Probab=97.82 E-value=0.00018 Score=65.12 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+.++|++|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4578999999999999999998873
No 123
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.81 E-value=0.002 Score=57.85 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=49.7
Q ss_pred HHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCc
Q 045887 140 IVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDE 217 (382)
Q Consensus 140 ~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 217 (382)
.+..+.++..+ .+...+.++|.+|+|||+||..+++.+.. .-..+++++ ..+++..+-...... ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~~---~~ 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSNS---ET 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhhc---cc
Confidence 44444444432 22457899999999999999999998422 223455664 344555544433210 11
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 218 DKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 218 ~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+. ..+.+.+. +.=|||+||+
T Consensus 152 ~~----~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 152 SE----EQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred cH----HHHHHHhc--cCCEEEEeCC
Confidence 11 12333444 3458889998
No 124
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.80 E-value=0.00093 Score=66.80 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=40.4
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHHHh---h--hcCC---CChhHHHHHHH
Q 045887 258 EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTVVG---C--MRGV---DEIHEWRNALN 328 (382)
Q Consensus 258 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~~~---~--L~~~---~~~~~w~~~l~ 328 (382)
..++++..+.++-.++|...+....... ......+++.+.|.- --|..+.. . .+.+ -+.+.+..+++
T Consensus 218 ~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 218 RQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4678999999888999887754322111 122457888887744 33333322 1 1222 35667777776
Q ss_pred HHh
Q 045887 329 ELR 331 (382)
Q Consensus 329 ~l~ 331 (382)
...
T Consensus 294 ~~~ 296 (495)
T TIGR01241 294 RVI 296 (495)
T ss_pred HHh
Confidence 654
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00056 Score=65.38 Aligned_cols=114 Identities=19% Similarity=0.289 Sum_probs=72.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC--ceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS--DVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGK 229 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 229 (382)
....+.|||..|.|||.|++.+.+. ...... .+++++ .......++..+.. .....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~---~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE---ALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH---HHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHh
Confidence 3689999999999999999999998 333433 234443 23344444433321 122233333
Q ss_pred HhCCCeEEEEEEcC---------------------CCC-eEEEecc---------------ccCc-eeeecCCCChHHHH
Q 045887 230 LKVKKKFVLILDYI---------------------DNH-MFCWGLR---------------SMGC-EEVIVPPLSKEEAL 271 (382)
Q Consensus 230 l~~~kr~LlVlDdv---------------------~~g-~iivTtR---------------~~~~-~~~~l~~L~~~ea~ 271 (382)
. . -=++++||+ ..| .|++|++ ++.. -.+++.+++.+...
T Consensus 174 y-~--~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 174 Y-S--LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred h-c--cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 3 1 236777877 456 8888987 1222 46799999999999
Q ss_pred HHHHHhhcCCCCCCC
Q 045887 272 NLFLDKVGRNILHVP 286 (382)
Q Consensus 272 ~Lf~~~a~~~~~~~~ 286 (382)
.++.+.+...+...+
T Consensus 251 aiL~kka~~~~~~i~ 265 (408)
T COG0593 251 AILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999997755544333
No 126
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.78 E-value=0.0015 Score=57.90 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=35.8
Q ss_pred cccCchHHHHHHHHH----HhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 132 TSRRNTKKIVKKVWE----DLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~----~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+|.+...+.|++ .+......-+.+||..|+|||+|++.+.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 346787877777754 3444566778899999999999999998884
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.78 E-value=0.0005 Score=62.71 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...-+.++|++|+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998874
No 128
>PRK08118 topology modulation protein; Reviewed
Probab=97.77 E-value=1.5e-05 Score=67.52 Aligned_cols=36 Identities=25% Similarity=0.576 Sum_probs=28.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEE
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIW 189 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 189 (382)
+.|.|+|++|+||||||+.+++.+....-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999984333356777775
No 129
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0019 Score=60.37 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCC-C----------------CceEEEEeCCCCCHH
Q 045887 138 KKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNE-F----------------SDVIWVTVSQPLDLV 199 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~-f----------------~~~~wv~~~~~~~~~ 199 (382)
+...+.+...+..+.+ +.+.++|+.|+||+++|..+++.+ .... . +...|+.......
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L--lC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~-- 85 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV--LASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT-- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH--hCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc--
Confidence 3455667777776664 579999999999999999998773 1111 0 1112221000000
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEEecc---
Q 045887 200 KLQAEIATALKLSPTKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCWGLR--- 253 (382)
Q Consensus 200 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iivTtR--- 253 (382)
+... ...-..+.++.+.+.+.. +++-++|+|++ ..+ .+|++|.
T Consensus 86 ----------~~k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 86 ----------GDKL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred ----------cccc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 0000 000012233334443322 35568888888 233 5555555
Q ss_pred ------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 254 ------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 254 ------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
...|..+.+.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 345678899999999999888653 1 11 234667899999999866544
No 130
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.74 E-value=7.1e-05 Score=60.28 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999998
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=97.70 E-value=0.0027 Score=58.64 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+.++|.+|+||||+|+.+++.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999886
No 132
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.70 E-value=0.00075 Score=62.28 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
-+.++|.+|+|||++|+.+++.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999998887763
No 133
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.69 E-value=0.0001 Score=65.57 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV 192 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 192 (382)
-.++|+|..|+|||||+..+... ....|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~---~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY---LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh---hcccCCEEEEEec
Confidence 36889999999999999999887 6778877766643
No 134
>PHA00729 NTP-binding motif containing protein
Probab=97.69 E-value=0.00021 Score=62.94 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.5
Q ss_pred HHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 143 KVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 143 ~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++++.+...+...|.|+|.+|+||||||..+++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455566667778999999999999999999887
No 135
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.68 E-value=0.005 Score=64.95 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=33.9
Q ss_pred cCchHHHHHHHHHHhc------CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM------GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~------~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|.+...+.|.+++. ....+++.++|++|+|||++|+.+++.
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5677777777777553 123468999999999999999999988
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0024 Score=65.68 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=60.8
Q ss_pred ccCchHHHHHHHHHHhc-------CC--CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHH
Q 045887 133 SRRNTKKIVKKVWEDLM-------GD--KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 203 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~-------~~--~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 203 (382)
+.+|-+..++.+.+.+. ++ ...+....|+.|||||.||+.++.. ..+.=+..+-++.|+-.. .
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~---Lfg~e~aliR~DMSEy~E-----k 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA---LFGDEQALIRIDMSEYME-----K 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH---hcCCCccceeechHHHHH-----H
Confidence 36677888888877764 22 3457778999999999999999887 332224445555444211 1
Q ss_pred HHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeE-EEEEEcC
Q 045887 204 EIATALKLSPTKDEDKVRRARRLLGKLKVKKKF-VLILDYI 243 (382)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv 243 (382)
.-.+.|-..++.--..++ ...|-+..+. ++| ++.||.+
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEI 602 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEI 602 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechh
Confidence 112333333332222222 3455666777 766 8889998
No 137
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.65 E-value=0.0098 Score=55.41 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHhcC----CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC
Q 045887 136 NTKKIVKKVWEDLMG----DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL 211 (382)
Q Consensus 136 gr~~~~~~l~~~l~~----~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 211 (382)
++........+++.+ ...+-+.++|..|+|||.||..+++.+. ...+. +.|+++ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 344444545555542 2346799999999999999999999942 23333 556654 3455555544422
Q ss_pred CCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 212 SPTKDEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
. +.. ...+.+. +-=||||||+
T Consensus 206 ~-----~~~----~~l~~l~--~~dlLiIDDi 226 (306)
T PRK08939 206 G-----SVK----EKIDAVK--EAPVLMLDDI 226 (306)
T ss_pred C-----cHH----HHHHHhc--CCCEEEEecC
Confidence 1 111 2223332 5679999998
No 138
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.00052 Score=69.67 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=35.4
Q ss_pred cCchHHHHHHHHHHhcCC-----CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMGD-----KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~-----~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|-++.++.+..++... ..+++.|+|++|+||||+++.++..
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 667778888888887643 2357999999999999999999887
No 139
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.62 E-value=0.00044 Score=65.30 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=65.3
Q ss_pred HHHHHHHHhcC-CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCc-eEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC
Q 045887 140 IVKKVWEDLMG-DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSD-VIWVTVSQ-PLDLVKLQAEIATALKLSPTKD 216 (382)
Q Consensus 140 ~~~~l~~~l~~-~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~ 216 (382)
...++++.+.. +.-..+.|+|.+|+|||||++.+++.+ ..++-+. .+|+.+.+ ..++.++++.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i--~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV--AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH--HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34456666653 334678999999999999999998873 1223333 36666665 4567888888888776544322
Q ss_pred chHH-----HHHHHHHHHH-hCCCeEEEEEEcC
Q 045887 217 EDKV-----RRARRLLGKL-KVKKKFVLILDYI 243 (382)
Q Consensus 217 ~~~~-----~~~~~l~~~l-~~~kr~LlVlDdv 243 (382)
.... .......+++ ..+++++||+|++
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2211 1222333333 2369999999998
No 140
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.61 E-value=0.0041 Score=65.25 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=36.3
Q ss_pred cCchHHHHHHHHHHhcC------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|.++..+.|++++.. ....++.++|++|+||||+|+.++..
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 67888888889887752 24568999999999999999999887
No 141
>CHL00176 ftsH cell division protein; Validated
Probab=97.60 E-value=0.002 Score=65.84 Aligned_cols=152 Identities=15% Similarity=0.228 Sum_probs=82.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
.+-+.++|++|+|||+||+.+++. .... |+.++.. ++.... .+ ... .....+.+....
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e---~~~p-----~i~is~s----~f~~~~---~g------~~~-~~vr~lF~~A~~ 273 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE---AEVP-----FFSISGS----EFVEMF---VG------VGA-ARVRDLFKKAKE 273 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH---hCCC-----eeeccHH----HHHHHh---hh------hhH-HHHHHHHHHHhc
Confidence 356899999999999999999887 2222 2322211 110000 00 011 112222222233
Q ss_pred CCeEEEEEEcC----------------------------------CCC-eEEEecc----------ccC--ceeeecCCC
Q 045887 233 KKKFVLILDYI----------------------------------DNH-MFCWGLR----------SMG--CEEVIVPPL 265 (382)
Q Consensus 233 ~kr~LlVlDdv----------------------------------~~g-~iivTtR----------~~~--~~~~~l~~L 265 (382)
..+++|++|++ ..+ .||.||. ..+ ...+.++..
T Consensus 274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lP 353 (638)
T CHL00176 274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLP 353 (638)
T ss_pred CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCC
Confidence 36777777777 124 4666665 111 146788889
Q ss_pred ChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHHHh---h--hcCC---CChhHHHHHHHHH
Q 045887 266 SKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTVVG---C--MRGV---DEIHEWRNALNEL 330 (382)
Q Consensus 266 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~~~---~--L~~~---~~~~~w~~~l~~l 330 (382)
+.++-.++|+.++..... ........++..+.|.- --|..+.. . .+.+ -+.++...++++.
T Consensus 354 d~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 354 DREGRLDILKVHARNKKL----SPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred CHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 999999999887644221 11234567888887733 22222221 1 1111 3566677777665
No 142
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0014 Score=64.65 Aligned_cols=88 Identities=22% Similarity=0.348 Sum_probs=56.3
Q ss_pred cCchHHHHHHHHHHhc---CC---------CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHH
Q 045887 134 RRNTKKIVKKVWEDLM---GD---------KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~---~~---------~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 201 (382)
+.|.++.+.+|.+.+. .+ ..+=|.+||++|+|||.||+.+++++ . +-|+.++.+
T Consensus 192 iGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~-----vPf~~isAp------ 257 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---G-----VPFLSISAP------ 257 (802)
T ss_pred ccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---C-----CceEeecch------
Confidence 5678888777766653 22 34778999999999999999999982 2 223444332
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 202 QAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+|+.... .++ ++.+.++++.-.+.-++++++|++
T Consensus 258 --eivSGvS-----GES-EkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 258 --EIVSGVS-----GES-EKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred --hhhcccC-----ccc-HHHHHHHHHHHhccCCeEEEeecc
Confidence 1222111 122 344555555554458899999988
No 143
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.59 E-value=0.011 Score=58.58 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+-|.++|++|+|||.+|+.+++.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 467899999999999999999998
No 144
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=0.00025 Score=60.28 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=25.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEE
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIW 189 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 189 (382)
.|.|+|++|+||||||+.+...+.-..-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998763111223454555
No 145
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.56 E-value=0.012 Score=54.32 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=47.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
..+++++|++|+||||++..++..+....+.+ .+..++..... ...+.+....+.++.+.....+..+.. ...+.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~-~~l~~~~ 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELR-KALDRLR 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHH-HHHHHcc
Confidence 46999999999999999999988732111122 35566644321 223334444455555433333443433 3333343
Q ss_pred CCCeEEEEEEc
Q 045887 232 VKKKFVLILDY 242 (382)
Q Consensus 232 ~~kr~LlVlDd 242 (382)
..=++++|.
T Consensus 272 --~~d~vliDt 280 (282)
T TIGR03499 272 --DKDLILIDT 280 (282)
T ss_pred --CCCEEEEeC
Confidence 334777775
No 146
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0034 Score=62.00 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
..+++|+|.+|+||||++..++..+.. ......+..++... .....+.+....+.++.......+...... +.+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~-aL~~l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLD-LLERLR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHH-HHHHhc
Confidence 479999999999999999998876321 12123355555432 111223333333444443222223333333 333333
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
+.=+|++|..
T Consensus 428 --~~DLVLIDTa 437 (559)
T PRK12727 428 --DYKLVLIDTA 437 (559)
T ss_pred --cCCEEEecCC
Confidence 3458888876
No 147
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.52 E-value=0.00041 Score=60.97 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=52.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHh-----CC----CCCCCchHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATAL-----KL----SPTKDEDKVRRA 223 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~----~~~~~~~~~~~~ 223 (382)
-.++.|+|.+|+|||+++.+++... ...-..++|++... ++...+.+ ++... .. ......+.....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 4799999999999999999998772 22345688999865 55544443 22221 10 111112222334
Q ss_pred HHHHHHHhCCCeEEEEEEcC
Q 045887 224 RRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 224 ~~l~~~l~~~kr~LlVlDdv 243 (382)
..+.+.+...+.-++|+|.+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHhhcCccEEEEeCc
Confidence 55555554435668999986
No 148
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0045 Score=58.42 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 137 TKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 137 r~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
-+..++.|.+.+..+.+ +...++|+.|+||||+|..+++.+
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777776654 577999999999999999998773
No 149
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0088 Score=56.04 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC-----C
Q 045887 139 KIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL-----S 212 (382)
Q Consensus 139 ~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~ 212 (382)
..-+.|.+.+..+. .+...++|+.|+||+++|..++..+. -...... ..++.-...+.+...-.. .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll-C~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM-CQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc-CCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEc
Confidence 34456667776665 46888999999999999999988731 1111100 001110111111110000 0
Q ss_pred C--CCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEEecc---------ccCce
Q 045887 213 P--TKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCWGLR---------SMGCE 258 (382)
Q Consensus 213 ~--~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~ 258 (382)
. ..... .+.++.+.+.+.. +++=++|+|++ .++ .+|++|. ...|.
T Consensus 81 p~~~~~I~-id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIG-VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCC-HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0 00011 2233334343331 35567778888 233 5555554 33467
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 259 EVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 259 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
.+.+.+++.++..+.+....... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 88999999999998887753111 123566788999999643
No 150
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.49 E-value=0.0037 Score=62.71 Aligned_cols=174 Identities=12% Similarity=0.052 Sum_probs=109.5
Q ss_pred cCchHHHHHHHHHHhc----C-CCceEEEEEeCCCCcHHHHHHHHHhchhcc-----cCCCCceEEEEeCCCCCHHHHHH
Q 045887 134 RRNTKKIVKKVWEDLM----G-DKVTKIGVWGMGGIGKTAIMRHINNRPQEE-----TNEFSDVIWVTVSQPLDLVKLQA 203 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~-~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~ 203 (382)
..+|+.+..+|-..+. . .....+-|.|.+|+|||..+..|.+.+... ...|+ .+.|+.-.-..+.++..
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHH
Confidence 4578999888877764 2 234589999999999999999999874322 22344 34445444557899999
Q ss_pred HHHHHhCCCCCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC-------------------CCC-eEEEecc------
Q 045887 204 EIATALKLSPTKDEDKVRRARRLLGKLK----VKKKFVLILDYI-------------------DNH-MFCWGLR------ 253 (382)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv-------------------~~g-~iivTtR------ 253 (382)
.|+.++..... ........|..+.. ..+.+++++|++ .++ |++|-+=
T Consensus 477 ~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 477 KIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 99999976432 22233334444433 146789999988 344 5444432
Q ss_pred -----------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 254 -----------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 254 -----------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
..|...+...|.+.++-.++...+..+.+...+.-.+-++++|+...|-.-.|+.+.-
T Consensus 554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 3344567788888888777777665444332333334455556655555555555443
No 151
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.48 E-value=0.0026 Score=66.72 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=70.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
.+-+.++|++|+|||+||+.+++. ....| +.++.. ++ +... ...+ +.....+......
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e---~~~~f-----i~v~~~----~l----~~~~-----vGes-e~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE---SGANF-----IAVRGP----EI----LSKW-----VGES-EKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---cCCCE-----EEEehH----HH----hhcc-----cCcH-HHHHHHHHHHHHh
Confidence 456889999999999999999998 32222 222211 11 1100 0111 2223333333333
Q ss_pred CCeEEEEEEcC--------------------------------CCC-eEEEecc----------ccC-c-eeeecCCCCh
Q 045887 233 KKKFVLILDYI--------------------------------DNH-MFCWGLR----------SMG-C-EEVIVPPLSK 267 (382)
Q Consensus 233 ~kr~LlVlDdv--------------------------------~~g-~iivTtR----------~~~-~-~~~~l~~L~~ 267 (382)
..+++|++|++ ..+ -||.||. ..+ . ..+.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 35677777776 123 4565665 112 2 4678899999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 268 EEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 268 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
++-.++|.............+ ...+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 999999876643322212222 355777777654
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.48 E-value=0.0055 Score=55.92 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHH
Q 045887 138 KKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 201 (382)
.+.++++..++..+ .-|.+.|.+|+|||+||+.+++. ... ..++++++...+..++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~---lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARK---RDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHH---hCC---CEEEEeCCccCCHHHH
Confidence 44556666666554 45668999999999999999876 222 2345565555444444
No 153
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.44 E-value=0.002 Score=59.23 Aligned_cols=143 Identities=19% Similarity=0.191 Sum_probs=89.1
Q ss_pred ccCchHHHHHHHHHHhc----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH-HHHHHHHHH
Q 045887 133 SRRNTKKIVKKVWEDLM----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL-VKLQAEIAT 207 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~ 207 (382)
.++|-.++..++-.++. .++..-+.|+|+.|.|||+|......+..++.++| +-|........ .-.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHH
Confidence 46676777777766665 35667889999999999999888766633344443 33444443322 223445554
Q ss_pred Hh----CCCCCCCchHHHHHHHHHHHHhC-----CCeEEEEEEcC-----------------------CCC-eEEEecc-
Q 045887 208 AL----KLSPTKDEDKVRRARRLLGKLKV-----KKKFVLILDYI-----------------------DNH-MFCWGLR- 253 (382)
Q Consensus 208 ~l----~~~~~~~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv-----------------------~~g-~iivTtR- 253 (382)
++ ........+..+....+...|.. +.++++|+|.+ .|- -|-+|||
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 44 32222223344445556666554 35689999887 344 6788999
Q ss_pred ------------ccCce-eeecCCCChHHHHHHHHHhh
Q 045887 254 ------------SMGCE-EVIVPPLSKEEALNLFLDKV 278 (382)
Q Consensus 254 ------------~~~~~-~~~l~~L~~~ea~~Lf~~~a 278 (382)
.+... .+-+++++-++-..++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 23333 44677788899999998876
No 154
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.44 E-value=0.00076 Score=63.35 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV 192 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 192 (382)
..+.++|.+|+|||+||..+++.+ ....+ .++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~-~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGK-SVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCC-eEEEEEH
Confidence 779999999999999999999984 22233 4667653
No 155
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.44 E-value=0.005 Score=61.93 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=36.9
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.+..++.+...+......-+.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346788888888887776665667789999999999999999764
No 156
>PRK10536 hypothetical protein; Provisional
Probab=97.43 E-value=0.0015 Score=58.51 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=34.4
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++......++.++.+. .++.+.|.+|+|||+||..++.+
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 456777788888888764 59999999999999999998885
No 157
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.40 E-value=0.0053 Score=51.62 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 137 TKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 137 r~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
-++..+.|.+.+.++.. +.+.++|..|+||+++|..+++.+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 35667778888877765 578999999999999999998874
No 158
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.031 Score=52.25 Aligned_cols=151 Identities=10% Similarity=0.134 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC-----C
Q 045887 139 KIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL-----S 212 (382)
Q Consensus 139 ~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~ 212 (382)
...+++...+..+. .+.+.++|+.|+||+++|..+++.+ ....-... .++.. ...+.+...-.. .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l--lC~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL--LCQNYQSE---ACGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH--cCCCCCCC---CCCCC----HHHHHHHcCCCCCEEEEe
Confidence 34456666666665 4689999999999999999998763 11110000 00000 111111110000 0
Q ss_pred C---CCCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEE-ecc--------ccCc
Q 045887 213 P---TKDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCW-GLR--------SMGC 257 (382)
Q Consensus 213 ~---~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iiv-TtR--------~~~~ 257 (382)
. ...... +.++.+.+.+.. +++=++|+|++ .++ .+|+ |+. ...|
T Consensus 81 p~~~~~~I~v-dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 81 PEKEGKSITV-EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred cCcCCCcCCH-HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 0 001111 222333333321 24557777777 333 4444 444 4456
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 258 EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 258 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
..+.+.+++.+++.+.+... + .+ .+..++..++|.|+.+..+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~-~-----~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQ-G-----IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHc-C-----Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 78899999999999988654 1 11 1356789999999977544
No 159
>PRK06921 hypothetical protein; Provisional
Probab=97.39 E-value=0.0011 Score=60.63 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=28.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV 192 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 192 (382)
....+.++|.+|+|||+||..+++.+ ....-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH
Confidence 45789999999999999999999983 2221234567763
No 160
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.004 Score=56.40 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
...-+.++|.+|+|||.||..+.+++. ...+ .+.+++ ..+++..+....... .....+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFIT------APDLLSKLKAAFDEG--------RLEEKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHhh
Confidence 567899999999999999999999942 3333 355664 455666665554331 11223333332
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
+-=||||||+
T Consensus 167 --~~dlLIiDDl 176 (254)
T COG1484 167 --KVDLLIIDDI 176 (254)
T ss_pred --cCCEEEEecc
Confidence 4559999998
No 161
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0046 Score=62.17 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=44.8
Q ss_pred cCchHHHHHHHHHHhc------CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHH
Q 045887 134 RRNTKKIVKKVWEDLM------GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~------~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 201 (382)
+.|.++..++|++++- +-.-++++.+|++|||||++|+.++.-+ ...| +-++++.-.+..++
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh
Confidence 6788888999988873 2245899999999999999999999883 3333 23445554444433
No 162
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.0065 Score=58.84 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 045887 137 TKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKD 216 (382)
Q Consensus 137 r~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 216 (382)
+...+.++.+.+..... ++.|.|+-++||||+++.+.... .+. .++++..+......
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~---------------- 78 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRI---------------- 78 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchh----------------
Confidence 34556666666655544 99999999999999997776662 222 56665433211110
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEEEcC--------------CCC--eEEEecc-----------c-cC-ceeeecCCCCh
Q 045887 217 EDKVRRARRLLGKLKVKKKFVLILDYI--------------DNH--MFCWGLR-----------S-MG-CEEVIVPPLSK 267 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~~kr~LlVlDdv--------------~~g--~iivTtR-----------~-~~-~~~~~l~~L~~ 267 (382)
...+....+.+.-.. ++.+|+||.| +.| +|++|+- . .| ...+++.|||-
T Consensus 79 -~l~d~~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 79 -ELLDLLRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -hHHHHHHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 111122222222222 6789999999 445 5777765 1 11 25679999999
Q ss_pred HHHHHH
Q 045887 268 EEALNL 273 (382)
Q Consensus 268 ~ea~~L 273 (382)
.|-..+
T Consensus 157 ~Efl~~ 162 (398)
T COG1373 157 REFLKL 162 (398)
T ss_pred HHHHhh
Confidence 998653
No 163
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.37 E-value=0.0016 Score=58.29 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=55.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccC----CCCceEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETN----EFSDVIWVTVSQPLDLVKLQAEIATALKLSP------------TKD 216 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 216 (382)
-.++.|+|.+|+|||+|+.+++... .... ....++|++....++...+. ++++..+... ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 4799999999999999999997541 1111 13568999987766654443 3333332211 111
Q ss_pred chHHHHHHHHHHHHhCC-CeEEEEEEcC
Q 045887 217 EDKVRRARRLLGKLKVK-KKFVLILDYI 243 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~~-kr~LlVlDdv 243 (382)
.+.......+.+.+... +.-|+|+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 22333445555666554 6779999987
No 164
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0066 Score=57.83 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=50.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
-.++.++|+.|+||||++..++..+. .......+..++... .....+-++...+.++.+.....+..+....+ ..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhc
Confidence 46999999999999999999988731 121223455665333 22345566666666666443222322333222 3344
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
+ +-++++|..
T Consensus 215 ~--~DlVLIDTa 224 (374)
T PRK14722 215 N--KHMVLIDTI 224 (374)
T ss_pred C--CCEEEEcCC
Confidence 3 456668977
No 165
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.36 E-value=0.0011 Score=59.06 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=52.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCC------CceEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEF------SDVIWVTVSQPLDLVKLQAEIATALKLSP---------TKDE 217 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~ 217 (382)
-.++.|+|.+|+|||+||..++... .... ..++|++....++...+. ++.+..+... ....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4799999999999999999987662 1222 457899887766654443 3333322110 0112
Q ss_pred hHHHHHHHHHHHHh---CCCeEEEEEEcC
Q 045887 218 DKVRRARRLLGKLK---VKKKFVLILDYI 243 (382)
Q Consensus 218 ~~~~~~~~l~~~l~---~~kr~LlVlDdv 243 (382)
+.++....+.+... ..+.-|+|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 33444444443332 435669999986
No 166
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.012 Score=55.44 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhccc-CCCCceEEEEeCCCCCHHHHHHHHHHHhCC-----
Q 045887 139 KIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEET-NEFSDVIWVTVSQPLDLVKLQAEIATALKL----- 211 (382)
Q Consensus 139 ~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----- 211 (382)
..-+++.+.+.++. .+.+.+.|+.|+||+++|..++..+ .. +..+.. .++.. ...+.+...-..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L--lC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL--MCQQPQGHK---SCGHC----RGCQLMQAGTHPDYYTL 79 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH--cCCCCCCCC---CCCCC----HHHHHHHcCCCCCEEEE
Confidence 34566777777665 4688899999999999999988773 11 100000 00000 011111100000
Q ss_pred --CCC-CCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEEecc---------ccC
Q 045887 212 --SPT-KDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCWGLR---------SMG 256 (382)
Q Consensus 212 --~~~-~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iivTtR---------~~~ 256 (382)
... .... .+.++.+.+.+.. +++=++|+|++ ..+ .+|++|. ...
T Consensus 80 ~p~~~~~~I~-idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 80 TPEKGKSSLG-VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred ecccccccCC-HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 000 0011 2223333433331 35667888877 233 4444444 344
Q ss_pred ceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 257 CEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 257 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
|..+.+.+++.+++.+.+..... . ..+.+..++..++|.|..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~-----~---~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVT-----M---SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccC-----C---CHHHHHHHHHHcCCCHHHH
Confidence 67789999999999988865421 1 1244677899999999744
No 167
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.35 E-value=0.00059 Score=58.25 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=28.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEE
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVT 191 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 191 (382)
...+|.+.|+.|+||||+|+.+++.+ ...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 44699999999999999999999883 33455555553
No 168
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0055 Score=60.60 Aligned_cols=128 Identities=19% Similarity=0.279 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
..=|.+||++|+|||-||++|+|. .+-. |+++..+ +++.... .+ .+..+..++..-+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE---ag~N-----FisVKGP----ELlNkYV---------GE-SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE---AGAN-----FISVKGP----ELLNKYV---------GE-SERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh---ccCc-----eEeecCH----HHHHHHh---------hh-HHHHHHHHHHHhhc
Confidence 467889999999999999999998 4333 4454432 2222221 11 23344555555555
Q ss_pred CCeEEEEEEcC-------------------------------CCC-eEEEecc----------ccCc--eeeecCCCChH
Q 045887 233 KKKFVLILDYI-------------------------------DNH-MFCWGLR----------SMGC--EEVIVPPLSKE 268 (382)
Q Consensus 233 ~kr~LlVlDdv-------------------------------~~g-~iivTtR----------~~~~--~~~~l~~L~~~ 268 (382)
.-+|+|.||.+ ..| -||-.|. ..|- ..+.|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 68999999988 234 3444443 2222 35578888889
Q ss_pred HHHHHHHHhhcC--CCCCCCCchHHHHHHHHHHcCCch
Q 045887 269 EALNLFLDKVGR--NILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 269 ea~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
|-.++++...-. .....+-++.+++.. .+|.|.-
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999999887642 222334445554432 3455553
No 169
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.35 E-value=0.00017 Score=57.39 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|+|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887
No 170
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.34 E-value=0.016 Score=56.56 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=47.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
.+++.++|++|+||||++..++..+. ....-..+..++..... ...+-+....+.++.+.....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 36999999999999999998877632 01222346666654321 12233344445555443323333444433332 22
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
..=++++|..
T Consensus 299 --~~DlVlIDt~ 308 (424)
T PRK05703 299 --DCDVILIDTA 308 (424)
T ss_pred --CCCEEEEeCC
Confidence 3457778864
No 171
>PRK10867 signal recognition particle protein; Provisional
Probab=97.34 E-value=0.015 Score=56.66 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+.+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999888887763
No 172
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0034 Score=63.05 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=75.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL--DLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
..-|.|.|..|+|||+||+.+++.+. +...-++.+++++.-. .+..++..+.. .+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHH
Confidence 46789999999999999999999842 4555556677766532 23333322221 222333
Q ss_pred hCCCeEEEEEEcC---------------------------------CCC---eEEEecc----------ccCc--eeeec
Q 045887 231 KVKKKFVLILDYI---------------------------------DNH---MFCWGLR----------SMGC--EEVIV 262 (382)
Q Consensus 231 ~~~kr~LlVlDdv---------------------------------~~g---~iivTtR----------~~~~--~~~~l 262 (382)
.. .+-++||||+ ..+ .+|.|.. .... ..+.+
T Consensus 492 ~~-~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 492 WY-APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred hh-CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 44 7888889988 223 3444544 1111 24578
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 045887 263 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 303 (382)
Q Consensus 263 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 303 (382)
+.+...+-.++++...-.+. .....+...-+..+|+|.
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCc
Confidence 88888887777776532221 111223334477888775
No 173
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0041 Score=60.52 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCC---------ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 138 KKIVKKVWEDLMGDK---------VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~---------~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|+++|+++|.++. ++=|.++|++|.|||-||+.++-.
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 467888999998752 467899999999999999999887
No 174
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0054 Score=62.74 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCC---------ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 138 KKIVKKVWEDLMGDK---------VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~---------~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++.++++.|.++. ++=+.++|++|+|||-||++++-.
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc
Confidence 456677778887752 467899999999999999999887
No 175
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.28 E-value=0.0015 Score=56.74 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=53.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCchHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLSPT---KDEDKVRRARRLLG 228 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 228 (382)
++++.++|+.|+||||.+..++..+.. . -..+..++... .....+-++..++.++.+.. ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~-~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL-K--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH-T--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh-c--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 478999999999999988888777322 2 33466777543 33456777888888876422 22344444444444
Q ss_pred HHhCCCeEEEEEEcC
Q 045887 229 KLKVKKKFVLILDYI 243 (382)
Q Consensus 229 ~l~~~kr~LlVlDdv 243 (382)
....++.=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 444313346777754
No 176
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.27 E-value=0.0011 Score=58.89 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=50.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH--------hCC-CCCCCchHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA--------LKL-SPTKDEDKVRRA 223 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--------l~~-~~~~~~~~~~~~ 223 (382)
-.++.|+|.+|+|||++|.+++.... ..-..++|++.. ..+...+. ++... +.. ......+..+..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 47999999999999999999988732 223557899877 44444432 23222 111 111111222333
Q ss_pred HHHHHHHhCCCeEEEEEEcC
Q 045887 224 RRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 224 ~~l~~~l~~~kr~LlVlDdv 243 (382)
..+...+.. +.-++|+|.+
T Consensus 98 ~~~~~~~~~-~~~lvVIDsi 116 (225)
T PRK09361 98 RKAEKLAKE-NVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHh-cccEEEEeCc
Confidence 444444444 7779999986
No 177
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.24 E-value=0.018 Score=53.87 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=35.2
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 045887 259 EVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 307 (382)
Q Consensus 259 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 307 (382)
++++++++.+|+..++....-.+-.......+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6799999999999999888655433222334456677777779998654
No 178
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.23 E-value=0.0022 Score=53.32 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=29.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 196 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 196 (382)
++.|+|.+|+||||++..++... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 46899999999999999998873 2233457788766543
No 179
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.062 Score=47.67 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.++-|.++|++|+|||.||+.|+|+
T Consensus 187 dpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45688999999999999999999998
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.22 E-value=0.0094 Score=63.42 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=32.8
Q ss_pred cCchHHHHHHHHHHhcC-------CC--ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG-------DK--VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-------~~--~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.+..++.+...+.. ++ ..++.++|++|+|||+||+.+++.
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56777777777666531 11 247889999999999999999887
No 181
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.21 E-value=0.0083 Score=63.00 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=33.5
Q ss_pred cCchHHHHHHHHHHhcC-------------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|.+..+++|.+.+.. ...+-+.++|++|+|||+||+.+++.
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 56778877777665421 12467889999999999999999987
No 182
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.032 Score=55.01 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=46.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
..+++++|+.|+||||++..++..+.. ......+..++... .....+-+....+.++.......+..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM-RHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH-hcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 379999999999999999999887321 22112344555332 12333445555565555432222222222222 2233
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
+ +..+++|-.
T Consensus 334 d--~d~VLIDTa 343 (484)
T PRK06995 334 N--KHIVLIDTI 343 (484)
T ss_pred C--CCeEEeCCC
Confidence 2 346666665
No 183
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.17 E-value=0.0017 Score=57.43 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=30.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 196 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 196 (382)
-.++.|+|.+|+||||+|.+++... ...-..++|++....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCC
Confidence 4789999999999999999998873 2222346788765544
No 184
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.17 E-value=0.0012 Score=61.50 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=52.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-+++-|+|++|+||||||.+++... ...-..++|++....++.. .++.++.... +..+.++....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4799999999999999999987772 2223457788876655542 3444443211 1123444444444
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
..++....-++|+|.+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 4454446779999987
No 185
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.012 Score=52.05 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH-------HHHHHHHH---HHh------------
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL-------VKLQAEIA---TAL------------ 209 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-------~~~~~~i~---~~l------------ 209 (382)
.++-+.++|++|.|||-||+.|+++ . ...|+.+|...-+ ..+.+++. +..
T Consensus 180 QPKGvlLygppgtGktLlaraVahh---t-----~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeids 251 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHH---T-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 251 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhh---c-----ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccc
Confidence 4678899999999999999999887 2 2345566543111 11122221 111
Q ss_pred -CCCC--CCCchHHHHHHHHHHHHhCCCeEEEEEEcC--CCC-eEEEecc----------ccCc--eeeecCCCChHHHH
Q 045887 210 -KLSP--TKDEDKVRRARRLLGKLKVKKKFVLILDYI--DNH-MFCWGLR----------SMGC--EEVIVPPLSKEEAL 271 (382)
Q Consensus 210 -~~~~--~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--~~g-~iivTtR----------~~~~--~~~~l~~L~~~ea~ 271 (382)
+... .......+......+.|.. ||++ .+. +||..|. ..|- ..|+.++-+.+.-.
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnq-------ldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~ 324 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQ-------LDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 324 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHh-------ccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHH
Confidence 1100 0111234445555556655 6777 455 8887775 2222 45678887777777
Q ss_pred HHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 272 NLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 272 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
++++-+.-.-+.....++..+++++....|.--.++.+=|+
T Consensus 325 ~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 325 DILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred HHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 77765532222223344555555444333333333444444
No 186
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0096 Score=52.97 Aligned_cols=134 Identities=17% Similarity=0.232 Sum_probs=77.2
Q ss_pred HHHHhcCC------CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCc
Q 045887 144 VWEDLMGD------KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDE 217 (382)
Q Consensus 144 l~~~l~~~------~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 217 (382)
|++.|.++ .++-|..+|++|.|||.+|+.+++. ..-.| +.+... ++ |-... .
T Consensus 136 i~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane---~kvp~-----l~vkat----~l---iGehV-------G 193 (368)
T COG1223 136 IMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE---AKVPL-----LLVKAT----EL---IGEHV-------G 193 (368)
T ss_pred HHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc---cCCce-----EEechH----HH---HHHHh-------h
Confidence 56777765 3689999999999999999999998 22222 222111 11 11111 1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEEcC--------------------------------CCC-eEEEecc---------cc
Q 045887 218 DKVRRARRLLGKLKVKKKFVLILDYI--------------------------------DNH-MFCWGLR---------SM 255 (382)
Q Consensus 218 ~~~~~~~~l~~~l~~~kr~LlVlDdv--------------------------------~~g-~iivTtR---------~~ 255 (382)
+....+.++.+.-+..-+|++.+|.+ +.| ..|-.|. ..
T Consensus 194 dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs 273 (368)
T COG1223 194 DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS 273 (368)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh
Confidence 23334445555444447788888876 456 3344443 11
Q ss_pred Cc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 045887 256 GC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 303 (382)
Q Consensus 256 ~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 303 (382)
.. ..|+...-+++|-.+++..++-.-.. ....-.+.++++.+|+
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Pl----pv~~~~~~~~~~t~g~ 318 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPL----PVDADLRYLAAKTKGM 318 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCC----ccccCHHHHHHHhCCC
Confidence 11 45677777888888888887632211 1112234566666654
No 187
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0081 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.++|.++|++|.|||+|++.+++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 4899999999999999999999984
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.024 Score=55.37 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=72.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
....+.+.|++|+|||+||..++.. ..|+.+--++.... . ..+.......+.+...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m-------------i------G~sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM-------------I------GLSESAKCAHIKKIFE 592 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc-------------c------CccHHHHHHHHHHHHH
Confidence 3567889999999999999999877 66774433321110 1 1122233333333332
Q ss_pred C---CCeEEEEEEcC-----------------------------CCC-eEEE--ecc------cc---Cc--eeeecCCC
Q 045887 232 V---KKKFVLILDYI-----------------------------DNH-MFCW--GLR------SM---GC--EEVIVPPL 265 (382)
Q Consensus 232 ~---~kr~LlVlDdv-----------------------------~~g-~iiv--TtR------~~---~~--~~~~l~~L 265 (382)
+ +.--.||+||+ ..| |.+| ||. .| .| ..|+++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 2 25678999998 455 4433 333 22 23 57899999
Q ss_pred Ch-HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHc
Q 045887 266 SK-EEALNLFLDKVGRNILHVPTLNEEIINSVVEEC 300 (382)
Q Consensus 266 ~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c 300 (382)
+. ++..+.++..-. ..+...+.++.+...+|
T Consensus 673 ~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 88 777777766521 12334456667777766
No 189
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.045 Score=56.71 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+++++|+.|+||||++..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4699999999999999999988763
No 190
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.13 E-value=0.0085 Score=58.45 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=35.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHHhCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATALKL 211 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 211 (382)
.+.+|.++|.+|+||||++..++..+.. ..+ .+..|++... ....+.+..+...++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~--~g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK--KGL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH--cCC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999887422 222 2334443221 1223445555555544
No 191
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.12 E-value=0.0014 Score=61.20 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=52.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSP-----TKDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 227 (382)
-+++-|+|++|+||||||.+++... ...-...+|++....+++. .++.++... .+..+.++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4789999999999999999987762 2233457899877665542 334443311 11123444444444
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
..+..+..-++|+|.+
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 4444446779999987
No 192
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.10 E-value=0.032 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+|.++|.+|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988763
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0015 Score=67.17 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=84.1
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCc-----eEEEEeCCCCCHHHHHHHHHH
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSD-----VIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~~~~~~~~~~~~~i~~ 207 (382)
+.+||++++.++++-|....-.--.++|.+|||||+++.-++.++ +.+.-+. .++- + ++ .
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI--v~g~VP~~L~~~~i~s-L----D~--------g 235 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI--VNGDVPESLKDKRIYS-L----DL--------G 235 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH--hcCCCCHHHcCCEEEE-e----cH--------H
Confidence 378999999999999976433344578999999999998888873 2222211 1111 0 11 1
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------------CCC--e-EEEecc-------
Q 045887 208 ALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------------DNH--M-FCWGLR------- 253 (382)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------------~~g--~-iivTtR------- 253 (382)
.+.....-..+.+++...+.+.+...++..|.+|.+ ..| + |-.||-
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 111111223456677777777777656899999987 234 3 344543
Q ss_pred ------ccCceeeecCCCChHHHHHHHHHhh
Q 045887 254 ------SMGCEEVIVPPLSKEEALNLFLDKV 278 (382)
Q Consensus 254 ------~~~~~~~~l~~L~~~ea~~Lf~~~a 278 (382)
....+.+.++..+.+++..+++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2233678899999999988887543
No 194
>PRK06696 uridine kinase; Validated
Probab=97.09 E-value=0.00087 Score=59.62 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhc---CCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 137 TKKIVKKVWEDLM---GDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 137 r~~~~~~l~~~l~---~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
|++.+++|.+.+. .+...+|+|.|.+|+||||||+.+...+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5666777777664 3467899999999999999999999884
No 195
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.08 E-value=0.018 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+..++|||++|+|||.+|+.+++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999998
No 196
>PRK09354 recA recombinase A; Provisional
Probab=97.08 E-value=0.0018 Score=60.85 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=53.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSP-----TKDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 227 (382)
-+++-|+|++|+||||||.+++.. ....-...+|++....++.. .++.++... .+..+.++....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~---~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAE---AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH---HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 478999999999999999998776 22233457899887766642 344444321 11123444444454
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
..++.+..-++|+|.+
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5555546779999988
No 197
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.07 E-value=0.052 Score=57.77 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=33.5
Q ss_pred ccCchHHHHHHHHHHhcC-------C--CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~-------~--~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|-+..++.+...+.. + ....+.++|+.|+|||+||+.+++.
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 366777778888766641 1 1345678999999999999999887
No 198
>PHA02244 ATPase-like protein
Probab=97.05 E-value=0.058 Score=51.14 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 139 KIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 139 ~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....+..++..+ .-|.|+|++|+|||+||+.+++.
T Consensus 107 ~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 107 YETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHH
Confidence 3344555555544 34677999999999999999887
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.04 E-value=0.0012 Score=57.25 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=45.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHh
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK--DEDKVRRARRLLGKLK 231 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 231 (382)
.++.|+|..|.||||++..++.++. .+-..++.+. ..++.......++.+++..... .....+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h
Confidence 4788999999999999999988732 2222233332 1112122233455555543221 1223344444443 2
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
.++.-+||+|.+
T Consensus 76 ~~~~dvviIDEa 87 (190)
T PRK04296 76 GEKIDCVLIDEA 87 (190)
T ss_pred CCCCCEEEEEcc
Confidence 324458999987
No 200
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.02 E-value=0.038 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+.++.++|.+|+||||+|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998888776
No 201
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0077 Score=53.65 Aligned_cols=88 Identities=24% Similarity=0.323 Sum_probs=55.4
Q ss_pred cCchHHHHHHHHHHhcC-------------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|-.+.+++|-+...- +.++-|.++|++|.|||-+|+.|+|+ .... |+.|-.. +
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr---tdac-----firvigs----e 246 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR---TDAC-----FIRVIGS----E 246 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc---cCce-----EEeehhH----H
Confidence 34567777777665431 24577899999999999999999998 3333 3333211 1
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+.+... ..-.....++++.-+.+|-|+|.+|.+
T Consensus 247 lvqkyv----------gegarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 247 LVQKYV----------GEGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred HHHHHh----------hhhHHHHHHHHHHhcccceEEEEeecc
Confidence 222111 112345566666666667888888877
No 202
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.01 E-value=0.0014 Score=65.89 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=52.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH-
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL- 230 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 230 (382)
.-++..++|++|.||||||.-+++. ..|. ++=|++|...+...+-..|...+..... +
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq-----aGYs-VvEINASDeRt~~~v~~kI~~avq~~s~---------------l~ 383 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ-----AGYS-VVEINASDERTAPMVKEKIENAVQNHSV---------------LD 383 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh-----cCce-EEEecccccccHHHHHHHHHHHHhhccc---------------cc
Confidence 4589999999999999999999887 3443 7788889888877777777665543221 2
Q ss_pred hCCCeEEEEEEcC
Q 045887 231 KVKKKFVLILDYI 243 (382)
Q Consensus 231 ~~~kr~LlVlDdv 243 (382)
.++++.-||+|.+
T Consensus 384 adsrP~CLViDEI 396 (877)
T KOG1969|consen 384 ADSRPVCLVIDEI 396 (877)
T ss_pred cCCCcceEEEecc
Confidence 1237788888887
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.00 E-value=0.0015 Score=61.40 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=38.4
Q ss_pred ccCchHHHHHHHHHHhcC------CCceEEEEEeCCCCcHHHHHHHHHhchh
Q 045887 133 SRRNTKKIVKKVWEDLMG------DKVTKIGVWGMGGIGKTAIMRHINNRPQ 178 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~------~~~~vv~I~G~gGvGKTtLa~~v~~~~~ 178 (382)
.+.|.++.++++++++.. ...+++.++|++|+||||||..+++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 477888889999888853 2358899999999999999999998843
No 204
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.99 E-value=0.011 Score=53.78 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=55.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch--hcccCC-CCceEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCCc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP--QEETNE-FSDVIWVTVSQPLDLVKLQAEIATALKLSP------------TKDE 217 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~--~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 217 (382)
-.+.=|+|.+|+|||.|+..++-.. +..... -..++|++-...++...+. +|++..+... ....
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3689999999999999998886441 111112 2358899988888877664 4565543311 1112
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 218 DKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 218 ~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
........+...+...+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 23334444444554446669999987
No 205
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.018 Score=55.24 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=78.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-CCchHH---HHHHHHHH-
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-KDEDKV---RRARRLLG- 228 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~---~~~~~l~~- 228 (382)
+=-.++|++|.|||++..+++|.+ .|+ +.=+.++...+-.+ ++.++..-....- -.+|.+ +...+-.+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n~d-Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~ 308 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLDSD-LRHLLLATPNKSILLIEDIDCSFDLRERRKKK 308 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCcHH-HHHHHHhCCCCcEEEEeecccccccccccccc
Confidence 456799999999999999999983 343 33344444333333 5555544321000 000000 00000000
Q ss_pred --HHh-CCCe-----EEEEEEcC---CCC-eE-EEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCC
Q 045887 229 --KLK-VKKK-----FVLILDYI---DNH-MF-CWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNIL 283 (382)
Q Consensus 229 --~l~-~~kr-----~LlVlDdv---~~g-~i-ivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~ 283 (382)
... ...+ .|=.+|++ ..+ || +.||. ..|- ..+++.--+.+.-..||.+......
T Consensus 309 ~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~- 387 (457)
T KOG0743|consen 309 KENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE- 387 (457)
T ss_pred cccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-
Confidence 000 0011 22346777 223 55 55666 2233 4678999999999999999865543
Q ss_pred CCCCchHHHHHHHHHHcCCchhHHHHHHhh-hcC
Q 045887 284 HVPTLNEEIINSVVEECAGLQLAIFTVVGC-MRG 316 (382)
Q Consensus 284 ~~~~~~~~~~~~i~~~c~glPLal~~~~~~-L~~ 316 (382)
.+ .+..+|.+...|.-+.=..++.. |..
T Consensus 388 -~h----~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 388 -DH----RLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred -Cc----chhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 12 44555666556665554455554 444
No 206
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.97 E-value=0.052 Score=58.00 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=40.7
Q ss_pred ccCchHHHHHHHHHHhcC-------C--CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 133 SRRNTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~-------~--~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
..+|.+..++.+...+.. + ...++.++|++|+|||++|+.++.. ....-...+.++.+.
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~---l~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF---LFDDEDAMVRIDMSE 633 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH---hcCCCCcEEEEechh
Confidence 367778888888777642 1 1356889999999999999999887 222223344555554
No 207
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.013 Score=55.04 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhc-CCCc-eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 136 NTKKIVKKVWEDLM-GDKV-TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 136 gr~~~~~~l~~~l~-~~~~-~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+-+....++..+.. .++. +.+.++|++|+||||+|..+++.+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 5 PWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 33556666777666 3334 459999999999999999999884
No 208
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.95 E-value=0.0084 Score=53.52 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+...+++|.|++|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999887
No 209
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.95 E-value=0.0078 Score=54.03 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=34.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
.-.++.|.|.+|+|||++|.++.... . ..-...+|++... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~--~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 34799999999999999999876651 1 2234578888765 444555543
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.084 Score=49.92 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 142 KKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 142 ~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
++|... .+.-.+.+.++|+.|+|||++|..++..+
T Consensus 11 ~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 11 NRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred HHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444443 33335788999999999999999998763
No 211
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0035 Score=61.85 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=92.2
Q ss_pred ccccccCchHHHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
......+|-+.....|.+.+..+. .+--...|+.|+||||+|+-++..+ ...+- ....+++.-..++.|..
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal--NC~~~------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL--NCENG------PTAEPCGKCISCKEINE 84 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh--cCCCC------CCCCcchhhhhhHhhhc
Confidence 344446787888888888887765 3567889999999999999998773 11110 11112222222233322
Q ss_pred HhCCC---CC-CCchHHHHHHHHHHHHhC----CCeEEEEEEcC------------------CCC-eEEEecc-------
Q 045887 208 ALKLS---PT-KDEDKVRRARRLLGKLKV----KKKFVLILDYI------------------DNH-MFCWGLR------- 253 (382)
Q Consensus 208 ~l~~~---~~-~~~~~~~~~~~l~~~l~~----~kr~LlVlDdv------------------~~g-~iivTtR------- 253 (382)
.-..+ .+ ...+..+-.+.+.+.... ++.=+.|+|.| ... ++|+.|.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 20000 00 001112223333333332 35558899999 334 5455444
Q ss_pred --ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 045887 254 --SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 303 (382)
Q Consensus 254 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 303 (382)
...|..|.+..++.++-...+...+...+... .++...-|++..+|.
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs 213 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGS 213 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCC
Confidence 34567889999999988888887765443321 133445555665553
No 212
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.93 E-value=0.005 Score=57.55 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=55.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch--hcc-cCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC---------CchHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP--QEE-TNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK---------DEDKV 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~--~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 220 (382)
-.++-|+|.+|+|||+|+.+++-.. +.. ...-..++||+....+++..+.+ +++.++..... ..+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 4789999999999999998876431 111 11123578999888888777654 56666543211 11222
Q ss_pred H---HHHHHHHHHhCCCeEEEEEEcC
Q 045887 221 R---RARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 221 ~---~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+ ....+...+...+--|+|+|.+
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 2 3334444444435568999987
No 213
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.028 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++-|..+|++|+|||++|+.+++.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhh
Confidence 4678999999999999999999998
No 214
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.89 E-value=0.0038 Score=56.71 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchH----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDK---- 219 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 219 (382)
-..++|+|.+|+|||||++.+++. ...+|. .++++-+++.. ...++.+.+...-.. ...+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~---i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN---IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH---HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 468999999999999999999998 443443 45566666654 355666666543111 11111111
Q ss_pred -HHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
......+.+++.. ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222334455531 49999999997
No 215
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.88 E-value=0.0078 Score=53.89 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=52.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT------------------ 214 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 214 (382)
-.++.|+|.+|+|||+|+.++.... .. .=..++|++..+. +.++.+++ .+++....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~--~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGA--LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH--Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 4799999999999999999996652 12 2235788887654 44555543 23332110
Q ss_pred --CCchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 215 --KDEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 215 --~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
...+.......+.+.+...+.-++|+|.+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 11233455566666665435568999976
No 216
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.82 E-value=0.015 Score=60.91 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=32.1
Q ss_pred cCchHHHHHHHHHHhcC-------C--CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-------~--~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|-+..++.+...+.. + ...++.++|++|+|||+||+.+++.
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 45666667777666541 1 2346889999999999999999887
No 217
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.82 E-value=0.0065 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
++.++|++|+||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998873
No 218
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.81 E-value=0.002 Score=52.62 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 138 KKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 138 ~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...++++.+.+.. .....|.|+|..|+||+++|+.++..
T Consensus 4 S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 3344444444331 23356789999999999999999887
No 219
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.80 E-value=0.002 Score=55.24 Aligned_cols=22 Identities=27% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999887
No 220
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.80 E-value=0.013 Score=55.37 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=55.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchh--cc-cCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCchHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQ--EE-TNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT---------KDEDKV 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~--~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 220 (382)
-.++-|+|.+|+|||+|+..++-... .. ...-..++||+....+++..+.+ +++.++.... ...+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 47888999999999999998864311 11 11124679999988888777654 5566654321 112333
Q ss_pred H---HHHHHHHHHhCCCeEEEEEEcC
Q 045887 221 R---RARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 221 ~---~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+ ....+...+...+--|||+|.+
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 2 2233333443335568999987
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=96.79 E-value=0.044 Score=57.62 Aligned_cols=129 Identities=11% Similarity=0.097 Sum_probs=80.5
Q ss_pred CCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEE
Q 045887 161 MGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLI 239 (382)
Q Consensus 161 ~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlV 239 (382)
+.++||||+|..+++++ ..+.++ ..+-++.+...+...+ ++++..+....+ +.+.+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l--~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~---------------~~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALAREL--FGENWRHNFLELNASDERGINVI-REKVKEFARTKP---------------IGGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhh--hcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC---------------cCCCCCEEEE
Confidence 78899999999999983 122332 3567777765555433 333333211111 0111457888
Q ss_pred EEcC------------------CCC-eEEEecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHH
Q 045887 240 LDYI------------------DNH-MFCWGLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEE 291 (382)
Q Consensus 240 lDdv------------------~~g-~iivTtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 291 (382)
+|++ ... ++|++|. ...|..+.+.+++.++-...+...+...+... .++
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e 712 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEE 712 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHH
Confidence 8988 223 6666555 34467889999999999888877654322211 245
Q ss_pred HHHHHHHHcCCchhHHHHH
Q 045887 292 IINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 292 ~~~~i~~~c~glPLal~~~ 310 (382)
....|++.|+|-+-.+..+
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 7788999999988554333
No 222
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.0011 Score=53.10 Aligned_cols=21 Identities=43% Similarity=0.795 Sum_probs=19.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|+|.|.+|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999888
No 223
>PRK14974 cell division protein FtsY; Provisional
Probab=96.78 E-value=0.015 Score=54.77 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=48.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC--CHHHHHHHHHHHhCCCCC---CCchHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL--DLVKLQAEIATALKLSPT---KDEDKVRRARRL 226 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l 226 (382)
...+|.++|++|+||||++..++..+. ...+. ++.+.. ..+ ...+-+......++.+.. ...+........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 467999999999999999888887732 22332 334442 222 233445556666665322 122333322222
Q ss_pred HHHHhCCCeEEEEEEcC
Q 045887 227 LGKLKVKKKFVLILDYI 243 (382)
Q Consensus 227 ~~~l~~~kr~LlVlDdv 243 (382)
.+.......=++++|..
T Consensus 215 i~~~~~~~~DvVLIDTa 231 (336)
T PRK14974 215 IEHAKARGIDVVLIDTA 231 (336)
T ss_pred HHHHHhCCCCEEEEECC
Confidence 22222212338888876
No 224
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.78 E-value=0.00079 Score=55.87 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEE
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVT 191 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 191 (382)
.+|-+.|.+|.||||||+.+.+.+ ...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 589999999999999999999984 22223355554
No 225
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.014 Score=56.10 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=52.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhccc-CCCCceEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEET-NEFSDVIWVTVSQP-LDLVKLQAEIATALKLSPTKDEDKVRRARRLLGK 229 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 229 (382)
...+|.++|+.|+||||.+..++..+.... .+-..+..++.... .....-++...+.++.+.....+..+....+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 357999999999999999999887732221 11223555554432 122333666666666654433444444443333
Q ss_pred HhCCCeEEEEEEcC
Q 045887 230 LKVKKKFVLILDYI 243 (382)
Q Consensus 230 l~~~kr~LlVlDdv 243 (382)
+ . +.-++++|..
T Consensus 252 ~-~-~~DlVLIDTa 263 (388)
T PRK12723 252 S-K-DFDLVLVDTI 263 (388)
T ss_pred h-C-CCCEEEEcCC
Confidence 2 2 5668888977
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.0066 Score=57.86 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
..++|+++|++|+||||++..++..+. ...+ .+..++.... ....+-+......++.+.....+.......+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 347999999999999999999988742 2222 2445554322 12233334444455544332334444444443322
Q ss_pred hCCCeEEEEEEcC
Q 045887 231 KVKKKFVLILDYI 243 (382)
Q Consensus 231 ~~~kr~LlVlDdv 243 (382)
...+.=++++|-.
T Consensus 317 ~~~~~DvVLIDTa 329 (436)
T PRK11889 317 EEARVDYILIDTA 329 (436)
T ss_pred hccCCCEEEEeCc
Confidence 2112346777754
No 227
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.77 E-value=0.0017 Score=57.91 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999887
No 228
>PRK06547 hypothetical protein; Provisional
Probab=96.76 E-value=0.0021 Score=54.67 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.5
Q ss_pred HHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 144 VWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 144 l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+...+......+|+|.|.+|+||||+|+.+.+.
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344455667889999999999999999999876
No 229
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.76 E-value=0.023 Score=58.65 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+-|.++|++|+|||++|+.+++.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999887
No 230
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0037 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988
No 231
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0015 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..-|+|.|++|+||||+++.+.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999999884
No 232
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.74 E-value=0.012 Score=55.50 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=55.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchh--cccC-CCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC---------CchHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQ--EETN-EFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK---------DEDKV 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~--~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 220 (382)
-.++-|+|.+|+|||+|+..++-... .... .-..++|++....+++..+ .+|++.++..... ..+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 47889999999999999998875411 1111 1225899999888887765 4556666543211 12223
Q ss_pred HH---HHHHHHHHhCCCeEEEEEEcC
Q 045887 221 RR---ARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 221 ~~---~~~l~~~l~~~kr~LlVlDdv 243 (382)
+. ...+...+...+--|||+|.+
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 22 222223333336668999986
No 233
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.73 E-value=0.0021 Score=58.92 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHH
Q 045887 142 KKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 142 ~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 201 (382)
..+++.+...+ +-+.++|+.|+|||++++.....+ ....| ...-++.+...+...+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l--~~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL--DSDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS--TTCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC--Ccccc-ceeEeeccCCCCHHHH
Confidence 34555554443 456899999999999999987762 11222 2345566665444443
No 234
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.72 E-value=0.063 Score=56.04 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=33.3
Q ss_pred cccCchHHHHHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 132 TSRRNTKKIVKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 346677766666655443 123357899999999999999999876
No 235
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.71 E-value=0.0029 Score=53.57 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=45.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCC-
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVK- 233 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 233 (382)
++.|.|.+|+|||++|.++... . ....+|+.-.+..+. ++.+.|.+.-... +......+....+.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~---~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---L---GGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---c---CCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcC
Confidence 3679999999999999998654 1 134667766665544 3444544432222 22222223333444444321
Q ss_pred CeEEEEEEcC
Q 045887 234 KKFVLILDYI 243 (382)
Q Consensus 234 kr~LlVlDdv 243 (382)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337888987
No 236
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.71 E-value=0.23 Score=47.71 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeC-CCCCHHHHHHHHHHHhCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVS-QPLDLVKLQAEIATALKL 211 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~ 211 (382)
.+.+|-.+|.-|.||||.|-.+++.+.+ ++ +. +.-|++. ..+...+-++.+..+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~-~k-vllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KG-KK-VLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cC-Cc-eEEEecccCChHHHHHHHHHHHHcCC
Confidence 3578999999999999999999988533 22 21 2223221 122334556666666655
No 237
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.69 E-value=0.014 Score=54.82 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=53.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccC----CCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC------------CC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETN----EFSDVIWVTVSQPLDLVKLQAEIATALKLSPT------------KD 216 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 216 (382)
-.++-|+|.+|+|||+++.+++... .... .-..++||+....+++..+.+ +++.++.... ..
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 4789999999999999999997652 1111 113689999888777766543 3444443211 00
Q ss_pred chHHHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 217 EDKVRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.........+...+.. .+--|||+|.+
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 1112223444444443 24558999986
No 238
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.49 Score=43.26 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=45.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
-+-|.++|++|.||+.||+.|+.. .. ..|.++|.. ++....+ ...+.++..|++.-+.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE---An-----STFFSvSSS----DLvSKWm----------GESEkLVknLFemARe 223 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATE---AN-----STFFSVSSS----DLVSKWM----------GESEKLVKNLFEMARE 223 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhh---cC-----CceEEeehH----HHHHHHh----------ccHHHHHHHHHHHHHh
Confidence 467899999999999999999887 22 223444432 2222211 1234556666666666
Q ss_pred CCeEEEEEEcC
Q 045887 233 KKKFVLILDYI 243 (382)
Q Consensus 233 ~kr~LlVlDdv 243 (382)
+++-+|.+|.+
T Consensus 224 ~kPSIIFiDEi 234 (439)
T KOG0739|consen 224 NKPSIIFIDEI 234 (439)
T ss_pred cCCcEEEeehh
Confidence 68888888877
No 239
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.68 E-value=0.016 Score=54.25 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=53.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch--hcccC-CCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCchHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP--QEETN-EFSDVIWVTVSQPLDLVKLQAEIATALKLSPT---------KDEDKV 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~--~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 220 (382)
-.++.|+|.+|+|||+|+..++... ..... .-..++|++....++...+ .++++.++.... ...+.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCChH
Confidence 5799999999999999999887541 11111 1235689998777776653 444555543221 011222
Q ss_pred H---HHHHHHHHHhCCCeEEEEEEcC
Q 045887 221 R---RARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 221 ~---~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+ ....+...+...+--|+|+|.+
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECc
Confidence 2 2333333343435668999986
No 240
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.67 E-value=0.016 Score=54.25 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=53.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhccc---C-CCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC------------CC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEET---N-EFSDVIWVTVSQPLDLVKLQAEIATALKLSPT------------KD 216 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 216 (382)
-.++-|+|.+|+|||+++.+++... ... . .-..++||+....++...+. +++..++.... ..
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 4788999999999999999997662 111 0 11268999988877776654 34444443210 00
Q ss_pred chHHHHHHHHHHHHhCC--CeEEEEEEcC
Q 045887 217 EDKVRRARRLLGKLKVK--KKFVLILDYI 243 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~~--kr~LlVlDdv 243 (382)
.........+.+.+... ..-++|+|.+
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSi 201 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSL 201 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 11112334445555441 2458999986
No 241
>PTZ00035 Rad51 protein; Provisional
Probab=96.66 E-value=0.023 Score=53.73 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=52.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcc---cC-CCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCchH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEE---TN-EFSDVIWVTVSQPLDLVKLQAEIATALKLSPT---------KDEDK 219 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 219 (382)
-.++.|+|.+|+|||+|+..++-. ... .. .-..++|++....+++..+ .++++.++.... ...+.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~-~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVT-CQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHH-hccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 478999999999999999988754 111 11 1234679987776666653 444555443211 11222
Q ss_pred HHHH---HHHHHHHhCCCeEEEEEEcC
Q 045887 220 VRRA---RRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 220 ~~~~---~~l~~~l~~~kr~LlVlDdv 243 (382)
++.. ..+...+...+--|||+|.+
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECc
Confidence 2222 23333343435669999986
No 242
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.013 Score=53.61 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=56.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC----CCCCCchHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL----SPTKDEDKVRRARRLLG 228 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~l~~ 228 (382)
-+++=|+|+.|.||||+|.+++-. ....-...+|++....+++..+..--...+.. ...........+..+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~---aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVAN---AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHH---hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 478999999999999999998776 33344478999988888877654333321222 22222233334444444
Q ss_pred HHhCCCeEEEEEEcC
Q 045887 229 KLKVKKKFVLILDYI 243 (382)
Q Consensus 229 ~l~~~kr~LlVlDdv 243 (382)
.... +--|+|+|.+
T Consensus 137 ~~~~-~i~LvVVDSv 150 (279)
T COG0468 137 SGAE-KIDLLVVDSV 150 (279)
T ss_pred hccC-CCCEEEEecC
Confidence 4433 4679999988
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.012 Score=52.79 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=53.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-----CCCHHHHHHHHHHHhCCCC------CCC-chH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-----PLDLVKLQAEIATALKLSP------TKD-EDK 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~~-~~~ 219 (382)
.-.+++|+|..|+|||||++.+..- ...-.+.++....+ .....+-..+++..++... +.. ++-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L----~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL----EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC----cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 3478999999999999999999765 23333444444222 1123344556666655421 222 233
Q ss_pred HHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 220 VRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 220 ~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+...-.+.+.|.- ++-++|.|.-
T Consensus 114 QrQRi~IARALal-~P~liV~DEp 136 (268)
T COG4608 114 QRQRIGIARALAL-NPKLIVADEP 136 (268)
T ss_pred hhhhHHHHHHHhh-CCcEEEecCc
Confidence 3344455566666 8899999975
No 244
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.65 E-value=0.11 Score=46.95 Aligned_cols=205 Identities=14% Similarity=0.166 Sum_probs=113.5
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcc---cCCCCceEEEEeCCC----------C----
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEE---TNEFSDVIWVTVSQP----------L---- 196 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~----------~---- 196 (382)
..+.++.-..+......++.+-..++|+.|.||-|.+..+.+.+-.. +-.-+...|.+-+.. .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 44556666666666666678999999999999999888887763111 111223344432221 1
Q ss_pred -------CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeE-EEEEEcC------------------CCC-eEE
Q 045887 197 -------DLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKF-VLILDYI------------------DNH-MFC 249 (382)
Q Consensus 197 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv------------------~~g-~ii 249 (382)
.-.-+.+++++......+-. ..+.+.| ++|+-.+ .+. ++|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 11234455554443321100 0011222 2222222 223 544
Q ss_pred Ee----cc-----ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhc--C--
Q 045887 250 WG----LR-----SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMR--G-- 316 (382)
Q Consensus 250 vT----tR-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~--~-- 316 (382)
+. || ...|-.+.++..+++|-...+++.+-..+...+ .+.+.+|+++|+|.---...+--.++ +
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 43 33 334456799999999999999888755544233 68899999999886533323322221 1
Q ss_pred ------CCChhHHHHHHHHHhhccccCCCChHhHHHHHHHhHhhC
Q 045887 317 ------VDEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYRRL 355 (382)
Q Consensus 317 ------~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L 355 (382)
.-+.-+|+-.+.+....+.... ....+..+-..=|+-|
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a~~i~~eQ-s~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIARVILKEQ-SPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccCCCCCCccHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 1235689988888765442222 2355555555556655
No 245
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.014 Score=52.79 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=33.6
Q ss_pred cCchHHHHHHHHHHhc----CC---------CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM----GD---------KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~~---------~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|-+..+++|.+... .+ .++-|.++|.+|.|||-||++|+|.
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 4456777777776653 11 3567889999999999999999998
No 246
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.087 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+.+.++|+.|+||||+|..++..+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998873
No 247
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.63 E-value=0.0084 Score=54.78 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchh
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQ 178 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~ 178 (382)
+.|.|.|.+|+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999988843
No 248
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.011 Score=56.19 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=52.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
..+++.++|+.|+||||++..++..+. ... ..+.+++..... ...+-++...+.++.+.....+..+....+. .+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~-~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQ-YM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHH-HH
Confidence 357999999999999999999987631 122 246667654322 2344556666666654333345555544443 33
Q ss_pred h-CCCeEEEEEEcC
Q 045887 231 K-VKKKFVLILDYI 243 (382)
Q Consensus 231 ~-~~kr~LlVlDdv 243 (382)
. .+..=++++|-.
T Consensus 281 ~~~~~~D~VLIDTA 294 (407)
T PRK12726 281 TYVNCVDHILIDTV 294 (407)
T ss_pred HhcCCCCEEEEECC
Confidence 3 114467777865
No 249
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.61 E-value=0.0077 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 250
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.024 Score=56.81 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+.+.++|++|.|||.||+.+++.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999999996
No 251
>PRK05973 replicative DNA helicase; Provisional
Probab=96.58 E-value=0.03 Score=49.99 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
-.++.|.|.+|+|||+++.+++... ... -..++|++...+ ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~--a~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA--MKS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH--Hhc-CCeEEEEEEeCC--HHHHHHHH
Confidence 3689999999999999999987762 122 234677776554 44454444
No 252
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.56 E-value=0.003 Score=62.75 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=38.3
Q ss_pred cCchHHHHHHHHHHh------cCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 134 RRNTKKIVKKVWEDL------MGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l------~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+.|.++.+++|++.| .+..-+++.++|++|+||||||+.+++-+
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 678999999999988 23456899999999999999999998873
No 253
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.55 E-value=0.009 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+|.+.|++|+||||+|+.++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999883
No 254
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.55 E-value=0.002 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++.|.|.+|+||||+|..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 36899999999999999999776
No 255
>PRK04328 hypothetical protein; Provisional
Probab=96.54 E-value=0.01 Score=53.75 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=30.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
.-.++.|.|.+|+|||+|+.++.... . ..-...+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--H-hcCCcEEEEEeeCC
Confidence 34799999999999999999976651 1 22345788887663
No 256
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.53 E-value=0.0055 Score=49.91 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=30.4
Q ss_pred EEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHH
Q 045887 156 IGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 203 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 203 (382)
|.++|.+|+|||+||+.+++.+ .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6799999999999999999883 11 234567777777666643
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.52 E-value=0.0094 Score=51.11 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=30.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHH
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 204 (382)
++.|.|.+|+|||+|+.+++.... +. =..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~-g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--AR-GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HC-CCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999877632 12 234778876543 4444433
No 258
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.52 E-value=0.0023 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
||+|.|.+|+||||+|+.+...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998884
No 259
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.51 E-value=0.0023 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 260
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.51 E-value=0.011 Score=53.77 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=30.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
-.++.|.|.+|+|||++|.+++.... . .=..++|++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a--~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA--S-RGNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--h-CCCcEEEEEecCC
Confidence 47999999999999999999866521 2 2235788887643
No 261
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.51 E-value=0.019 Score=52.57 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH--HHHHHHHHHHhCCCC---CCCchHHHH-HH
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL--VKLQAEIATALKLSP---TKDEDKVRR-AR 224 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~-~~ 224 (382)
...+++.++|++|+||||++..++..+. ... ..+..++... +.. .+-+....+..+... ....+.... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g-~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQG-KSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcC-CEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 3468999999999999999999987732 222 2355565432 222 233344455554321 111222222 23
Q ss_pred HHHHHHhCCCeEEEEEEcC
Q 045887 225 RLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 225 ~l~~~l~~~kr~LlVlDdv 243 (382)
.+...... ..=++++|-.
T Consensus 146 ~l~~~~~~-~~D~ViIDT~ 163 (272)
T TIGR00064 146 AIQKAKAR-NIDVVLIDTA 163 (272)
T ss_pred HHHHHHHC-CCCEEEEeCC
Confidence 33333333 4557777865
No 262
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.49 E-value=0.017 Score=53.24 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+.+|+|.|..|+||||+|+.+..-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999887655
No 263
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0037 Score=51.50 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=33.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCC
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLS 212 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 212 (382)
+|.|.|++|+||||+|+.+++++ .-. ++ +...+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~-----~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLK-----LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCc-----ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999882 111 11 3346788888887764
No 264
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.028 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
-.+++|.|+.|+|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 36999999999999999999854
No 265
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.48 E-value=0.014 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+|+|.|.+|+||||||+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998873
No 266
>PRK08233 hypothetical protein; Provisional
Probab=96.48 E-value=0.0024 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+|+|.|.+|+||||||..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998873
No 267
>PRK06851 hypothetical protein; Provisional
Probab=96.47 E-value=0.036 Score=52.73 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=32.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
.+--+++.|.|.+|+|||||++.++... ....++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a--~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAA--EERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCC
Confidence 4445889999999999999999999983 3456665555554443
No 268
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.45 E-value=0.0028 Score=55.65 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
....+|+|.|.+|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998873
No 269
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.45 E-value=0.021 Score=50.97 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=32.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
-.++.|.|.+|+||||||.+++.... ... ..++|++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 46999999999999999877766522 222 3457776433 445666655
No 270
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.43 E-value=0.11 Score=49.06 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 136 NTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 136 gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
|....+.++.+.+.. ....-|.|+|..|+||+++|+.+.+.
T Consensus 3 G~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 3 GESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 334444444443321 22356799999999999999999776
No 271
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.43 E-value=0.026 Score=48.65 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=46.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCC--------CceEEEEeCCCCCHHHHHHHHHHHhCCCC------------
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEF--------SDVIWVTVSQPLDLVKLQAEIATALKLSP------------ 213 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------ 213 (382)
.++.|.|.+|+||||++..++..+. ....| ..++|++.... ...+.+.+........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~-~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA-TGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH-T---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-hCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccc
Confidence 5899999999999999999988743 22222 25778876654 3333333332221110
Q ss_pred ----------CCCchHHHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 214 ----------TKDEDKVRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 214 ----------~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
............+.+.+.. .+.-++|+|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l 150 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPL 150 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-G
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCH
Confidence 0000123344556666655 35679999986
No 272
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.41 E-value=0.4 Score=48.54 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred cccCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 132 TSRRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|....+.++.+.+.. .....|.|+|..|+|||++|+.+++.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3467777777777666542 23356789999999999999999876
No 273
>PRK07667 uridine kinase; Provisional
Probab=96.41 E-value=0.0048 Score=53.54 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 142 KKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 142 ~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+.|.+.+.. +...+|+|.|.+|+||||+|..+...+
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444432 334799999999999999999998873
No 274
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.40 E-value=0.012 Score=62.57 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=33.8
Q ss_pred cCchHHHHHHHHHHhc-------CC--CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM-------GD--KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~-------~~--~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|-+..++.+.+.+. .+ ...++.++|++|+|||.||+.++..
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 6677888888877663 11 2357899999999999999999887
No 275
>PRK06762 hypothetical protein; Provisional
Probab=96.40 E-value=0.0027 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 276
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.39 E-value=0.045 Score=46.79 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=50.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC--CCCHHHH------HHHHHHHhCCC------CCCCch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ--PLDLVKL------QAEIATALKLS------PTKDED 218 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~------~~~i~~~l~~~------~~~~~~ 218 (382)
-.+++|.|..|.|||||++.++... ....+.+++.-.. ..+.... ..++++.++.. ...-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3699999999999999999998762 2234444443111 1112111 11244444432 111223
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 219 KVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 219 ~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
-+...-.+...+.. .+-++++|+-
T Consensus 101 G~~qrl~laral~~-~p~llllDEP 124 (180)
T cd03214 101 GERQRVLLARALAQ-EPPILLLDEP 124 (180)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEeCC
Confidence 34445556667777 8889999986
No 277
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.024 Score=54.98 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=45.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
..+++++|..|+||||++..++..+ ........+..++... .....+-+....+.++.+.....+..+....+ ..+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhc
Confidence 4799999999999999999887652 1122223334444322 12333345555555655443333333333222 2233
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
+ .-++++|-.
T Consensus 269 ~--~d~VLIDTa 278 (420)
T PRK14721 269 G--KHMVLIDTV 278 (420)
T ss_pred C--CCEEEecCC
Confidence 2 334555543
No 278
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.38 E-value=0.0027 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+|+|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998873
No 279
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.37 E-value=0.033 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 36899999999999999998853
No 280
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.35 E-value=0.0029 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.++|.|.|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999876
No 281
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.34 E-value=0.061 Score=54.00 Aligned_cols=61 Identities=10% Similarity=0.186 Sum_probs=40.8
Q ss_pred cccCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 132 TSRRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
...+|....+.++.+.+.. ....-|.|+|..|+|||++|+.+.+. ....-...+.|++..-
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~---s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA---SPRADKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh---CCcCCCCeEEEEcccC
Confidence 3466777777776665542 23467889999999999999999887 2212223455665543
No 282
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.34 E-value=0.043 Score=57.08 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=54.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-+++-|+|.+|+|||||+.+++.... ..-..++|++....++. ..+++++.... ...+.++....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 47899999999999999988766521 22245789987776663 35666665322 1223344455555
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
..+..++--|+|+|.+
T Consensus 132 ~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 132 MLIRSGALDIVVIDSV 147 (790)
T ss_pred HHhhcCCCeEEEEcch
Confidence 5555546779999987
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.32 E-value=0.018 Score=55.13 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=48.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK-----DEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 227 (382)
-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++. .-++.++..... ..+.+ .+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le----~I~ 151 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLE----DIL 151 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHH----HHH
Confidence 4699999999999999999998773 222245778876543 33332 223445542221 12223 333
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
+.+...+.-++|+|.+
T Consensus 152 ~~i~~~~~~lVVIDSI 167 (372)
T cd01121 152 ASIEELKPDLVIIDSI 167 (372)
T ss_pred HHHHhcCCcEEEEcch
Confidence 3333336778999987
No 284
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.32 E-value=0.014 Score=49.15 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=46.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP--LDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
-.+++|.|..|.|||||.+.++... ....+.+++.-... .+..+.. .+.++.- ++-+.-+.....+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHH
Confidence 3689999999999999999997762 23344555532111 1111111 1111111 11233334445556666
Q ss_pred hCCCeEEEEEEcC
Q 045887 231 KVKKKFVLILDYI 243 (382)
Q Consensus 231 ~~~kr~LlVlDdv 243 (382)
.. ++-++++|+-
T Consensus 98 ~~-~p~illlDEP 109 (163)
T cd03216 98 AR-NARLLILDEP 109 (163)
T ss_pred hc-CCCEEEEECC
Confidence 66 7888888986
No 285
>PRK03839 putative kinase; Provisional
Probab=96.32 E-value=0.003 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999988
No 286
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.015 Score=50.67 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+...+|+|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999887
No 287
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.31 E-value=0.039 Score=49.14 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
-.++.|.|.+|+|||||+.+++.... ..-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 47999999999999999998876522 12345788876443
No 288
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.08 Score=53.61 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=75.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVK 233 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 233 (382)
.-|.++|++|+|||.||..++..+ ..-+|++..+ +++...+ |. .++..+.++..-+.-
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP----ElL~KyI---Ga-------SEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP----ELLSKYI---GA-------SEQNVRDLFERAQSA 759 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH----HHHHHHh---cc-------cHHHHHHHHHHhhcc
Confidence 458899999999999999998772 1336666554 2333222 21 234455566555555
Q ss_pred CeEEEEEEcC-------------------------------CCC-eE-EEecc---------ccCc--eeeecCCCChHH
Q 045887 234 KKFVLILDYI-------------------------------DNH-MF-CWGLR---------SMGC--EEVIVPPLSKEE 269 (382)
Q Consensus 234 kr~LlVlDdv-------------------------------~~g-~i-ivTtR---------~~~~--~~~~l~~L~~~e 269 (382)
++|+|.+|.+ -.| -| -.||| +.|- +.+.-+.-++.+
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 9999999988 245 23 34677 2222 233445556677
Q ss_pred HHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 045887 270 ALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 270 a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
-.++|...+-.-....+ -..+.++.+.+|..-|
T Consensus 840 Rl~il~~ls~s~~~~~~----vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTD----VDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHhhccCCccc----cchHHHhhhcCCCchh
Confidence 77777765432211111 2345577777776544
No 289
>PRK14527 adenylate kinase; Provisional
Probab=96.30 E-value=0.0085 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.|+|++|+||||+|+.+++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999877
No 290
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.014 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++.++|++|+||||++..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 291
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.28 E-value=0.0082 Score=55.89 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=50.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK-----DEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 227 (382)
-+++-|+|..|+||||||..+.... ...-...+|++....+++. .+..++..... ..+.++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4799999999999999999988772 2223457899887765543 33444442211 123344445555
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
..++.+..-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5566646679999998
No 292
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.28 E-value=0.005 Score=54.81 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCC---------------CCC--
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLS---------------PTK-- 215 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~-- 215 (382)
-.++.|.|.+|+|||+|+.++....... .=..++|++..++ ..++.+.+- +++.. .+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4799999999999999999876552222 0224788887654 344444432 33210 000
Q ss_pred ---CchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 216 ---DEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 216 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
..+.......+.+.+...+...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 2355666677776666535579999986
No 293
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.27 E-value=0.0038 Score=54.77 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|++|+|||||++.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999876
No 294
>PRK04040 adenylate kinase; Provisional
Probab=96.27 E-value=0.0037 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999888
No 295
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.26 E-value=0.032 Score=55.66 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=55.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCC---------------CCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSP---------------TKD 216 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~~~ 216 (382)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++.... +.++... +..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 347999999999999999999988732 22234677776553 44555443 4444321 112
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 217 EDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
.+.++....+.+.+...+.-++|+|.+
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 234566677777776545668888876
No 296
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.25 E-value=0.0085 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.|.|+.|+||||++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988777
No 297
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.25 E-value=0.0078 Score=59.75 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=48.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCce-EEEEeCCCCC-HHHHHHHHHHHhCCCCCCCch-----HHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDV-IWVTVSQPLD-LVKLQAEIATALKLSPTKDED-----KVRRARR 225 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~ 225 (382)
-...+|+|.+|+|||||++.+++.+.. .+-++. +.+-+.+... +.++.+.+-..+-....+... .......
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997321 222333 3444555433 333333321111111111111 1223333
Q ss_pred HHHHHh-CCCeEEEEEEcC
Q 045887 226 LLGKLK-VKKKFVLILDYI 243 (382)
Q Consensus 226 l~~~l~-~~kr~LlVlDdv 243 (382)
+-+++. .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 444553 259999999999
No 298
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.24 E-value=0.049 Score=48.05 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=32.4
Q ss_pred cCchHHHHHHHH----HHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 134 RRNTKKIVKKVW----EDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 134 ~~gr~~~~~~l~----~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|.+...+.|+ ..+......-|.+||-.|+|||+|++.+.+.+
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 456555555554 33344456778999999999999999999883
No 299
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.61 Score=43.38 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=36.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH--HHHHHHHHHHhCC
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL--VKLQAEIATALKL 211 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~ 211 (382)
+.+.|+.++|..|+||||-.-.+++.+ ..+.+ .+-+-....|.. .+-++...+.++.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l--~~~g~--~VllaA~DTFRAaAiEQL~~w~er~gv 195 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYL--KQQGK--SVLLAAGDTFRAAAIEQLEVWGERLGV 195 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHH--HHCCC--eEEEEecchHHHHHHHHHHHHHHHhCC
Confidence 457899999999999998877777774 23444 344444555442 2334445555554
No 300
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.24 E-value=0.051 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|..|.|||||.+.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 469999999999999999999776
No 301
>PTZ00301 uridine kinase; Provisional
Probab=96.23 E-value=0.0059 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999998776
No 302
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.21 E-value=0.026 Score=47.05 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|-|++-.|.||||+|...+-+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r 25 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR 25 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46788889999999999988777
No 303
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.21 E-value=0.0071 Score=49.50 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
++|.|+|..|+|||||++.+.+.+ ....+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l--~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL--KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--hHcCCceEEEEEccC
Confidence 589999999999999999999995 334555455555444
No 304
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.19 E-value=0.4 Score=45.88 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCC----CceEEEEEeCCCCcHHH-HHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 045887 139 KIVKKVWEDLMGD----KVTKIGVWGMGGIGKTA-IMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLS 212 (382)
Q Consensus 139 ~~~~~l~~~l~~~----~~~vv~I~G~gGvGKTt-La~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 212 (382)
+....+..++.++ ..++|.++|+.|+|||| ||+..+.. . ....-..+..|+... .....+-++..++-++.+
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-V-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-H-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 3344444444443 36899999999999986 66666555 2 123333466676543 223455666777777776
Q ss_pred CCCCchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 213 PTKDEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 213 ~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
.....+..+....+... +. +=++.+|-+
T Consensus 263 ~~vv~~~~el~~ai~~l-~~--~d~ILVDTa 290 (407)
T COG1419 263 LEVVYSPKELAEAIEAL-RD--CDVILVDTA 290 (407)
T ss_pred eEEecCHHHHHHHHHHh-hc--CCEEEEeCC
Confidence 66555666655554433 32 234445544
No 305
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.19 E-value=0.024 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....-++|+|..|.|||||.+.++..
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCc
Confidence 344678999999999999999999887
No 306
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.18 E-value=0.076 Score=50.07 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=30.3
Q ss_pred cCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|+...+..+.+.+.. ....-|.|+|-.|+||+++|+.+...
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45555555555554432 22356889999999999999999765
No 307
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.18 E-value=0.018 Score=56.02 Aligned_cols=87 Identities=13% Similarity=0.219 Sum_probs=48.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhC-----C-CCCCCchH-----HH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALK-----L-SPTKDEDK-----VR 221 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~-~~~~~~~~-----~~ 221 (382)
-..++|+|..|+|||||++.++.. . ....++++.......++.++....+.... . ...+.... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l---~-~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA---D-AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---C-CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 368999999999999999988765 1 22234445443334455554444433321 1 11111111 11
Q ss_pred HHHHHHHHHhC-CCeEEEEEEcC
Q 045887 222 RARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 222 ~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
....+.+++++ ++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 22233344432 59999999999
No 308
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.17 E-value=0.035 Score=55.63 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCceEEEEEeCCCCcHHH-HHHHHHhchhcccCCCCceEEEEeCCCCCH--HHHHHHHHHHhCC
Q 045887 142 KKVWEDLMGDKVTKIGVWGMGGIGKTA-IMRHINNRPQEETNEFSDVIWVTVSQPLDL--VKLQAEIATALKL 211 (382)
Q Consensus 142 ~~l~~~l~~~~~~vv~I~G~gGvGKTt-La~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~ 211 (382)
++|++.+..+ .||.|+|-.|.|||| |++.+|.+ .|...--|-+.++..+ ..+.+.+.+.++.
T Consensus 362 ~~ll~~ir~n--~vvvivgETGSGKTTQl~QyL~ed------GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 362 DQLLSVIREN--QVVVIVGETGSGKTTQLAQYLYED------GYADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred HHHHHHHhhC--cEEEEEecCCCCchhhhHHHHHhc------ccccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 4455555444 799999999999987 77878776 2211113444555443 3456666666643
No 309
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.17 E-value=0.041 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|..|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999876
No 310
>PRK06217 hypothetical protein; Validated
Probab=96.16 E-value=0.0047 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..|.|.|.+|+||||+|+.+...+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999883
No 311
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.16 E-value=0.0046 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.++|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999988
No 312
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.15 E-value=0.021 Score=59.66 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.3
Q ss_pred cCchHHHHHHHHHHhcC---------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG---------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~---------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|-+..++.|.+.+.. .....+.++|++|+|||+||+.++..
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 56767777777766641 12357899999999999999999887
No 313
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.016 Score=48.52 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.3
Q ss_pred cCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 149 MGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 149 ~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+...+|-+.|.+|.||||+|..++..+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 44556799999999999999999999884
No 314
>PRK00625 shikimate kinase; Provisional
Probab=96.13 E-value=0.0041 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.++||+|+||||+++.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999887
No 315
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.089 Score=53.75 Aligned_cols=88 Identities=14% Similarity=0.279 Sum_probs=56.2
Q ss_pred cCchHHHHHHHHHHhcC---------CC---ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHH
Q 045887 134 RRNTKKIVKKVWEDLMG---------DK---VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~---------~~---~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 201 (382)
..|-++.+..|.+-+.- .+ ..=|.++|++|.|||-||++|+.++ ..-|++|..+ ++
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP----EL 741 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP----EL 741 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----HH
Confidence 34667777777766532 22 3568899999999999999999883 1346666553 22
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 202 QAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
++.- +| .+ ++-.+++++.-+...+|+|.||.+
T Consensus 742 LNMY---VG------qS-E~NVR~VFerAR~A~PCVIFFDEL 773 (953)
T KOG0736|consen 742 LNMY---VG------QS-EENVREVFERARSAAPCVIFFDEL 773 (953)
T ss_pred HHHH---hc------ch-HHHHHHHHHHhhccCCeEEEeccc
Confidence 2211 11 12 233445555555559999999988
No 316
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.096 Score=46.74 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=33.5
Q ss_pred cCchHHHHHHHHHHhcC-------------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|-++.+++|++.+-- ..++-+..+|++|.|||-+|+..+..
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 45678888888877621 13567899999999999999998766
No 317
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.09 E-value=0.026 Score=49.71 Aligned_cols=86 Identities=20% Similarity=0.417 Sum_probs=52.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHH--hC-----CCCCCCchHH----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATA--LK-----LSPTKDEDKV---- 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~--l~-----~~~~~~~~~~---- 220 (382)
-..++|+|.+|+|||+|+..+.+. . .-+.++++-+++. ....++.+++... +. ....+.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~---~--~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANN---Q--DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH---C--TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhc---c--cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 368999999999999999999888 2 2334578888765 3455666666443 10 1111111111
Q ss_pred -HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 -RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 -~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
...-.+-++++. ++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hccchhhhHHHhhcCCceeehhhhh
Confidence 111222233332 49999999997
No 318
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.09 E-value=0.0049 Score=49.08 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhchhcccCCCC
Q 045887 156 IGVWGMGGIGKTAIMRHINNRPQEETNEFS 185 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~~~~~~~~f~ 185 (382)
|.|+|.+|+||||+|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~---~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS---LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH---TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH---cCCcee
Confidence 678999999999999999988 555664
No 319
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.07 E-value=0.04 Score=50.37 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
.++.|.|.+|+||||++.+++... ...+-..++|+++.. +..++...+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~--~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDL--ITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--HHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 588999999999999999998773 122123578888765 345555555544
No 320
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.05 E-value=0.004 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHHhch
Q 045887 156 IGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~~ 177 (382)
|-|+|.+|+|||+||..++.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998874
No 321
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.051 Score=46.11 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999876
No 322
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.01 E-value=0.034 Score=53.95 Aligned_cols=87 Identities=13% Similarity=0.229 Sum_probs=49.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC-------CCCCCchHH-----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL-------SPTKDEDKV----- 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~----- 220 (382)
-..++|+|..|+|||||++.++.. .. ....++...........++....+..-+. ...+.....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~---~~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN---TD-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC---CC-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999988776 22 22223332223344455566655443221 111111111
Q ss_pred HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 ~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.....+.+++++ ++.+||++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 122234455533 58999999998
No 323
>PTZ00494 tuzin-like protein; Provisional
Probab=96.01 E-value=1.1 Score=43.44 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=83.2
Q ss_pred cccccCchHHHHHHHHHHhc---CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLM---GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 206 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~---~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 206 (382)
....++.|+.+-.-+-+.|. ...++++.+.|.-|+||++|.+..... +. -..++|++... ++-++.+.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk-E~-----~paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV-EG-----VALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH-cC-----CCeEEEEecCC---cchHHHHH
Confidence 34457788776555555444 456899999999999999999988666 22 23678887664 44678889
Q ss_pred HHhCCCCCCC-chHHHHHHHHH----HHHhCCCeEEEEEE-----cC------------CCC--eEEEecc---------
Q 045887 207 TALKLSPTKD-EDKVRRARRLL----GKLKVKKKFVLILD-----YI------------DNH--MFCWGLR--------- 253 (382)
Q Consensus 207 ~~l~~~~~~~-~~~~~~~~~l~----~~l~~~kr~LlVlD-----dv------------~~g--~iivTtR--------- 253 (382)
+.|+.+..+. .|.-+.+.+.. ....+ +.-+||+- ++ +.. +|++.--
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g-~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASD-GVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCC-CCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhc
Confidence 9998754432 23333332222 22333 44555543 11 222 3433322
Q ss_pred -ccCceeeecCCCChHHHHHHHHHh
Q 045887 254 -SMGCEEVIVPPLSKEEALNLFLDK 277 (382)
Q Consensus 254 -~~~~~~~~l~~L~~~ea~~Lf~~~ 277 (382)
...-.-|.+++++.++|.+.-.+.
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhcc
Confidence 111245788999999998876554
No 324
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.06 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+-|..+|++|.|||-||+.|+..
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh
Confidence 56889999999999999999988
No 325
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.038 Score=53.62 Aligned_cols=86 Identities=13% Similarity=0.235 Sum_probs=51.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchH-----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDK----- 219 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~----- 219 (382)
-..++|+|..|+|||||++.+++. . ..+.++++-+++.. ...++...++..-+. ...+....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~---~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG---T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC---C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 468999999999999999999765 1 22455556666644 345566666544221 11111111
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 ~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++++ ++.+||++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1112233444422 49999999998
No 326
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.00 E-value=0.0047 Score=53.71 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|+|.|.+|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999776
No 327
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.00 E-value=0.05 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|..|.|||||.+.++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999876
No 328
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.61 Score=43.31 Aligned_cols=144 Identities=14% Similarity=0.060 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchh-------cccCCCCceEEEEe-CCCCCHHHHHHHHHHHhC
Q 045887 140 IVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQ-------EETNEFSDVIWVTV-SQPLDLVKLQAEIATALK 210 (382)
Q Consensus 140 ~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~-------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~ 210 (382)
.++.+.+.+..+. .++..++|..|+||+++|..+.+.+. ....+-+...++.. +......++. ++++.+.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhc
Confidence 3455566666654 46778999999999999999988730 01111112333332 2223333332 4444443
Q ss_pred CCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEec-c--------ccCceeeec
Q 045887 211 LSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGL-R--------SMGCEEVIV 262 (382)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTt-R--------~~~~~~~~l 262 (382)
.... ..+++=++|+|++ .++ .+|++| . ...|..+++
T Consensus 83 ~~~~----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 83 FSSF----------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred cCCc----------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 3220 0013444455554 222 444333 3 334678899
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 263 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 263 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
.+++.++..+.+... . .+ ++.+..++...+|.=-|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 999999998877654 1 11 24455666666763344443
No 329
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.98 E-value=0.016 Score=59.22 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=55.5
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL 211 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 211 (382)
..+.|.+..++.|...+... +.+.++|.+|+||||+|+.+++.+ ...+++..+|..- ...+...+++.+...++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 34678788888777766655 478999999999999999999873 2344677788654 444677778887766654
No 330
>PRK08149 ATP synthase SpaL; Validated
Probab=95.98 E-value=0.028 Score=54.57 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=50.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCC-------CCCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKL-------SPTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~---- 219 (382)
.-..++|+|..|+|||||+..+++. . .-+.+++..+.. ..+..++.......... ...+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~-~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEH-S----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcC-C----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 3468999999999999999999876 1 223333444443 33455666666654321 11111111
Q ss_pred -HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++++ ++++||++||+
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccch
Confidence 1122233344422 59999999999
No 331
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.97 E-value=0.016 Score=52.85 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=37.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
.-+++.|+|.+|+|||+++.++... .......++||+..+. ..++.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~---~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYE---GAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---HHhcCCcEEEEEecCC--HHHHHHHH
Confidence 4589999999999999999999888 3444677999998774 34444444
No 332
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.97 E-value=0.037 Score=50.32 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=56.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcc--cCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchH--
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEE--TNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDK-- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-- 219 (382)
.-..++|+|-+|+|||+|+..+.+. ... +.+-+.++++-+++.. ...++...+...-.. ...+....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~-~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHh-hhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 3468899999999999999999877 221 1234667888887754 456666666554211 11111111
Q ss_pred ---HHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 220 ---VRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 220 ---~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
.-....+.++++. ++++|+++||+
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122334455543 38999999998
No 333
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.96 E-value=0.011 Score=57.90 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=36.4
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++||++.++.+...+..+ .-|.+.|++|+|||+||+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHH
Confidence 4789999999998877655 46889999999999999999887
No 334
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0056 Score=51.11 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHH
Q 045887 155 KIGVWGMGGIGKTAIMRHIN 174 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~ 174 (382)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999986
No 335
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.96 E-value=0.056 Score=48.46 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
.++.|.|.+|+|||+++.+++.+. ...+=..++|++... +..++...++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~--~~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENI--AKKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 689999999999999999987773 222123467877655 44555555543
No 336
>PRK14529 adenylate kinase; Provisional
Probab=95.93 E-value=0.032 Score=49.38 Aligned_cols=82 Identities=17% Similarity=0.104 Sum_probs=43.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCc--eEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSD--VIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
.|.|.|++|+||||+++.++..+ ...+.+. .+.-.+..........+.++..- .- .+.+-....+.+.+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~--~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G-~l----vpdei~~~lv~~~l~~ 74 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY--DLAHIESGAIFREHIGGGTELGKKAKEYIDRG-DL----VPDDITIPMILETLKQ 74 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--CCCCcccchhhhhhccCCChHHHHHHHHHhcc-Cc----chHHHHHHHHHHHHhc
Confidence 37889999999999999998873 1222221 11112222223334444444321 11 1223334445555544
Q ss_pred CCeEEEEEEcC
Q 045887 233 KKKFVLILDYI 243 (382)
Q Consensus 233 ~kr~LlVlDdv 243 (382)
...-=+|||++
T Consensus 75 ~~~~g~iLDGf 85 (223)
T PRK14529 75 DGKNGWLLDGF 85 (223)
T ss_pred cCCCcEEEeCC
Confidence 22345889988
No 337
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.93 E-value=0.038 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..|+|.|..|+||||+++.+++.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999884
No 338
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.93 E-value=0.013 Score=51.36 Aligned_cols=42 Identities=31% Similarity=0.482 Sum_probs=28.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 198 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 198 (382)
.|+|+|-||+||||+|..++..+.. ++.|. +.=|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCce-EEEEeCCCCCCh
Confidence 6899999999999999997666322 22233 555665555443
No 339
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.92 E-value=0.11 Score=52.13 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=33.2
Q ss_pred cCchHHHHHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|....+..+.+.+. .....-|.|.|..|+||+.+|+.+++.
T Consensus 214 iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred eeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 5677777777666553 233467899999999999999999876
No 340
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.92 E-value=0.014 Score=53.16 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=43.1
Q ss_pred HHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 142 KKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 142 ~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
.+|+..+. .++..+|+|.|.||+|||||.-.+...+ ....+--.++=|+-|.+++-..++-.=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccH
Confidence 34454443 3567899999999999999999998884 334444456666667776655554433
No 341
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.92 E-value=0.025 Score=51.37 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=48.8
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHHhchhcccCCCCce-EEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchHH--
Q 045887 153 VTKIGVWGMGGIGKTAIM-RHINNRPQEETNEFSDV-IWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDKV-- 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-- 220 (382)
-..++|+|.+|+|||+|| ..+.+. . +-+.+ +++-+++.. ...++.+.+...-.. ...+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~---~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ---K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh---c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 368999999999999996 555554 2 22333 566666653 455666666543211 111111111
Q ss_pred ---HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 ---RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 ---~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
...-.+.+++.. ++.+|+++||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233333332 49999999997
No 342
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.91 E-value=0.0066 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|.|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 343
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.90 E-value=0.02 Score=50.63 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=29.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhc----ccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQE----ETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~----~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
+..|+|++|.|||+++..+...+.. ....-...+-++...+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7899999999999877777666211 1123334444444444455555555544
No 344
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.89 E-value=0.36 Score=47.60 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHhcC-------------CCCccccccccccc
Q 045887 65 TEVKNWLQNLQRINSKAQSIEQEVKKRKYFLCARLGKDVDAKIQEMKDCHQKG-------------CSFISLWIDIVNNN 131 (382)
Q Consensus 65 ~~v~~Wl~~l~~~~y~~ed~~d~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~-------------~~~~~~~~~~~~~~ 131 (382)
.+++.|.++=++++. .+|++-.+..+ +...+++.....+.+..+..++ +|+..-..++|...
T Consensus 317 ~q~K~~~kqqk~i~~-~K~~ia~~g~g----~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~ 391 (614)
T KOG0927|consen 317 NQMKAYEKQQKQIAH-MKDLIARFGHG----SAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIM 391 (614)
T ss_pred HHHHHHHHHHhHHHH-hhHHHHhhccc----chhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEE
Confidence 467888777766544 56666555543 2234666666666666555542 11111111111110
Q ss_pred cc--cCchHHHHHHHHHHhc-C-CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC---ceEEEEeCC----------
Q 045887 132 TS--RRNTKKIVKKVWEDLM-G-DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS---DVIWVTVSQ---------- 194 (382)
Q Consensus 132 ~~--~~gr~~~~~~l~~~l~-~-~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~~---------- 194 (382)
.. -.|-+..- .|...|. . +--..|+++|+.|+|||||.+.++-++....+.-. +..+-...+
T Consensus 392 ~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~ 470 (614)
T KOG0927|consen 392 VQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDK 470 (614)
T ss_pred EeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcch
Confidence 00 11111111 2222221 1 22368999999999999999999887432221110 000000000
Q ss_pred -----------CCCHHHHHHHHHHHhCCCCCC------CchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 195 -----------PLDLVKLQAEIATALKLSPTK------DEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 195 -----------~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+....+..+.|+...+..... ..+..+....++.++.-..+-+||||.-
T Consensus 471 s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 471 SSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred hHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 013445566777776664221 1233344445555554447899999975
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.88 E-value=0.0068 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999877
No 346
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.88 E-value=0.006 Score=50.40 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++.+.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999776
No 347
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.86 E-value=0.048 Score=53.04 Aligned_cols=87 Identities=13% Similarity=0.224 Sum_probs=50.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHHhCC-------CCCCCchHH---
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATALKL-------SPTKDEDKV--- 220 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~--- 220 (382)
.-..++|+|..|+|||||++.+.+. . ..+..++..+++. ..+.+.+.+....-.. ...+.....
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~---~--~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA---P--DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC---C--CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 4478999999999999999998776 2 2333455555553 3444555554321100 011111111
Q ss_pred --HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 --RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 --~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.....+.+++++ ++++||++||+
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 112234444433 58999999998
No 348
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.85 E-value=0.011 Score=51.55 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEE
Q 045887 139 KIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVT 191 (382)
Q Consensus 139 ~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 191 (382)
.+....++.+. +..++.+.|++|.|||.||...+-+. -..+.|+.++++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 34455556655 55799999999999999999998773 2347788777764
No 349
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.051 Score=46.01 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|..|.|||||.+.++.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999876
No 350
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.84 E-value=0.05 Score=52.86 Aligned_cols=87 Identities=11% Similarity=0.213 Sum_probs=52.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchHH---
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDKV--- 220 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 220 (382)
.-..++|+|..|+|||||...+++. . .-+.++++-+++.. ...++....+..-+. ...+.....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~---~--~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRS---A--EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcC---C--CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3468999999999999999999887 2 22456777776643 345555444432111 111111111
Q ss_pred --HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 --RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 --~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.....+.+++++ ++++||++|++
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 112233344432 59999999998
No 351
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=95.83 E-value=0.036 Score=52.31 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.7
Q ss_pred HhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEE
Q 045887 147 DLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVT 191 (382)
Q Consensus 147 ~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 191 (382)
.+..+.-+.+.|-|++|.|||++|..+.+. .+++.+ +++++
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~---l~~~~~-v~YIS 44 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNS---LKDHGN-VMYIS 44 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHH---HhccCC-eEEEE
Confidence 344555688999999999999999999888 444444 44554
No 352
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.83 E-value=0.0061 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 353
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.81 E-value=0.04 Score=54.94 Aligned_cols=41 Identities=20% Similarity=0.060 Sum_probs=28.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
.-+++.|.|.+|+||||||.+++..- ..+.=...+||++.+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g--~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNG--IIHFDEPGVFVTFEE 60 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHhCCCCEEEEEEec
Confidence 34799999999999999999986541 111113467777654
No 354
>PRK05439 pantothenate kinase; Provisional
Probab=95.79 E-value=0.067 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...-+|+|.|.+|+||||+|+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999776
No 355
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.78 E-value=0.0066 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.78 E-value=0.15 Score=47.82 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+++++|++|+||||++..++..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998873
No 357
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.035 Score=48.64 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=30.4
Q ss_pred HHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC
Q 045887 144 VWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS 185 (382)
Q Consensus 144 l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~ 185 (382)
++..+-++...-..|.|++|+|||||.+.++.-+..-.+.|.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l 169 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFL 169 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccC
Confidence 555555556666889999999999999999887433334554
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=95.76 E-value=0.03 Score=40.47 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=18.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.+++.|.|.+|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467888999999999655554444
No 359
>PRK13947 shikimate kinase; Provisional
Probab=95.76 E-value=0.0078 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999988
No 360
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.76 E-value=0.078 Score=51.63 Aligned_cols=87 Identities=8% Similarity=0.195 Sum_probs=51.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 219 (382)
.-..++|+|..|+|||||++.+++. . ..+.++++-+++.. ...++....+..-+. ...+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~---~--~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARN---A--DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc---c--CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3478999999999999999999876 2 12345556566543 344555544443221 11111111
Q ss_pred -HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++++ ++.+|+++||+
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122234444432 59999999999
No 361
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.75 E-value=0.021 Score=51.10 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=34.3
Q ss_pred HHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHH
Q 045887 142 KKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 142 ~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 201 (382)
..+++.+. ..+..+|+|.|+||+|||||.-.+...+. ..++--.++=|+-|.+++-..+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCcc
Confidence 34444443 24678999999999999999999988842 2333334555555555554443
No 362
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.74 E-value=0.027 Score=54.20 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+-|.++|++|+|||++|+.++..
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999888
No 363
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.74 E-value=0.0083 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++++|+|+.|+|||||++.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999886
No 364
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.73 E-value=0.041 Score=55.32 Aligned_cols=50 Identities=18% Similarity=0.087 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
.-+++.|.|.+|+|||+|+.+++... ....-..++|++.... ..++.+.+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~--~~~~ge~~lyis~ee~--~~~i~~~~ 79 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNG--IKRFDEPGVFVTFEES--PEDIIRNV 79 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhcCCCEEEEEccCC--HHHHHHHH
Confidence 34799999999999999999987652 1121245778877663 34444443
No 365
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.72 E-value=0.01 Score=52.12 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=26.4
Q ss_pred HhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 147 DLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 147 ~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+...++++|+++|..|+|||||..++.+.
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999999999877
No 366
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.028 Score=53.31 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=51.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKD-EDKVRRARRLLGKLK 231 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 231 (382)
-.+|.|-|-+|+|||||..+++.++ ...- .++||+-.+... ++ +--+..|+...... .-.+...+.+...+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~l---A~~~-~vLYVsGEES~~--Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARL---AKRG-KVLYVSGEESLQ--QI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHH---HhcC-cEEEEeCCcCHH--HH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3799999999999999999999984 2222 688887655432 21 22244555432211 111222333444444
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
..++-|+|+|-+
T Consensus 166 ~~~p~lvVIDSI 177 (456)
T COG1066 166 QEKPDLVVIDSI 177 (456)
T ss_pred hcCCCEEEEecc
Confidence 448999999988
No 367
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.72 E-value=0.061 Score=47.71 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=32.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 204 (382)
-.++.|.|.+|+|||++|.+++... .. .=..++|++...+ ..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~--~~-~g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQG--LK-NGEKAMYISLEER--EERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--Hh-CCCeEEEEECCCC--HHHHHHH
Confidence 4789999999999999999987662 12 2234778877663 3444433
No 368
>PF13479 AAA_24: AAA domain
Probab=95.72 E-value=0.04 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCcHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHI 173 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v 173 (382)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46899999999999999977
No 369
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.72 E-value=0.051 Score=53.27 Aligned_cols=90 Identities=21% Similarity=0.274 Sum_probs=56.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCch-----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDED----- 218 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~----- 218 (382)
.-..++|+|.+|+|||||+.++++... +.+-+.++++-+++.. ...++...+...-.. ...+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 347899999999999999999988731 2345667777776643 455666666543211 1111111
Q ss_pred HHHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 219 KVRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 219 ~~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
.......+.++++. ++.+||++|++
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 11223344455532 39999999998
No 370
>PRK05922 type III secretion system ATPase; Validated
Probab=95.71 E-value=0.047 Score=53.03 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=49.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLS-------PTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~---- 219 (382)
.-..++|+|..|+|||||.+.+.+. . ..+...++-+++ .......+.+....+... ..+....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~---~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKG---S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc---C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 3467999999999999999999876 1 223333433333 333445555554433221 1111111
Q ss_pred -HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++++ ++++||++||+
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1222334455532 59999999998
No 371
>PRK13949 shikimate kinase; Provisional
Probab=95.69 E-value=0.009 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|.|+|++|+||||+++.+++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999988
No 372
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.68 E-value=0.019 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.|+|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999877
No 373
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.68 E-value=0.035 Score=54.13 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=56.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCch-----H
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDED-----K 219 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~-----~ 219 (382)
-..++|+|.+|+|||+|+..+.+.. . ..+-+.++|+-+++.. ...++.+.+...-.. ...+... .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4689999999999999999998772 1 2233667788777654 355666666543211 1111111 1
Q ss_pred HHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 220 VRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 220 ~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
......+.++++. ++.+||++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223344566653 59999999999
No 374
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.67 E-value=0.019 Score=47.88 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 139 KIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 139 ~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++.|.+.+.+ +++.++|..|+|||||...+...
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 345667777655 79999999999999999999877
No 375
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.67 E-value=0.019 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
-.+|.+.|.-|+||||+++.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999883
No 376
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.67 E-value=0.089 Score=51.90 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=47.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-.++.|.|.+|+|||||+.+++..... . -..++|++..+. ..++... +..++.... ...+.+ .+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~--~-g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~----~I~ 163 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK--N-QMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWE----QIC 163 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh--c-CCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHH----HHH
Confidence 479999999999999999999777322 1 134788876543 3333221 233433211 112333 333
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
+.+...+.-++|+|.+
T Consensus 164 ~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 164 ANIEEENPQACVIDSI 179 (454)
T ss_pred HHHHhcCCcEEEEecc
Confidence 3333336668999977
No 377
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.66 E-value=0.26 Score=49.64 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=30.7
Q ss_pred ccCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++|....+.++.+.+.. ..-.-|.|+|-.|+||+++|+.+.+.
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 456666666666554431 12345789999999999999998665
No 378
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.65 E-value=0.043 Score=56.12 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=49.0
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL 211 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 211 (382)
..+|.++.++.+...+.... -+.++|++|+||||+|+.+++.+ ....|...+++. ....+...++..++..++.
T Consensus 19 ~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l--~~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 19 QVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL--PDEELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc--CchhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 36787777777777666553 55599999999999999999883 222333344333 2233455667777766654
No 379
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.047 Score=45.44 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=45.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVK 233 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 233 (382)
.+++|+|..|.|||||++.+...+ ....+.+++........ ........++.... -..-+.....+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~- 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLL- 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhc-
Confidence 699999999999999999998762 23345555542211110 00011111111100 12223344445566666
Q ss_pred CeEEEEEEcC
Q 045887 234 KKFVLILDYI 243 (382)
Q Consensus 234 kr~LlVlDdv 243 (382)
.+-++++|+.
T Consensus 98 ~~~i~ilDEp 107 (157)
T cd00267 98 NPDLLLLDEP 107 (157)
T ss_pred CCCEEEEeCC
Confidence 6788888986
No 380
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.17 Score=50.88 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCC---------ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 138 KKIVKKVWEDLMGDK---------VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~---------~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++.++++.|.++. ++=+.++|++|.|||.||+.++..
T Consensus 159 keel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 159 KEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred HHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 345666777777653 467899999999999999999988
No 381
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.65 E-value=0.073 Score=53.50 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=53.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCC---------------CCCCc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLS---------------PTKDE 217 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~~~ 217 (382)
-.++.|.|.+|+|||+|+..++... ...-..++|++.... ..++.+.. ..++.+ .+...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccC
Confidence 4688999999999999999998762 223356888887654 44444433 333321 11122
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 218 DKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 218 ~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
+..+....+...+...+.-++|+|.+
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 33455556666555435568999998
No 382
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.64 E-value=0.011 Score=46.58 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999877
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.63 E-value=0.0087 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+|+|.|.+|+||||||..+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998873
No 384
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.63 E-value=0.17 Score=49.89 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.+++.|.|++|+||||.++.++..
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHh
Confidence 4579999999999999999999876
No 385
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0091 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|-||=|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999998
No 386
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.62 E-value=0.037 Score=48.21 Aligned_cols=26 Identities=12% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+....|+|+|.+|+|||||...+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 34579999999999999999998876
No 387
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.61 E-value=0.011 Score=52.79 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.++||+|.||||..+.++.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 3568899999999999999999888
No 388
>PRK14530 adenylate kinase; Provisional
Probab=95.61 E-value=0.0093 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|.|+|++|+||||+|+.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999887
No 389
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.60 E-value=0.076 Score=52.28 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=48.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++... ++.++.... ...+.+. +.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~----i~ 149 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEA----IL 149 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHH----HH
Confidence 46999999999999999999988732 12234788876543 3333222 445543211 1123333 33
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
+.+...+.-++|+|.+
T Consensus 150 ~~i~~~~~~lVVIDSI 165 (446)
T PRK11823 150 ATIEEEKPDLVVIDSI 165 (446)
T ss_pred HHHHhhCCCEEEEech
Confidence 3333336668999987
No 390
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.60 E-value=0.086 Score=44.42 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=47.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCC--CC---ceEEEEeCCCCCH--HHHHHHHHHHhCCCCCCCchHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNE--FS---DVIWVTVSQPLDL--VKLQAEIATALKLSPTKDEDKVRRARR 225 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 225 (382)
-.+++|+|..|.|||||++.++.......+. ++ .+.++ .+.... ..+...+.-. ....-+.-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 3689999999999999999998762211111 11 11222 222211 1233332210 12222334455556
Q ss_pred HHHHHhCCCeEEEEEEcC
Q 045887 226 LLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 226 l~~~l~~~kr~LlVlDdv 243 (382)
+.+.+.. ++=++++|+-
T Consensus 102 laral~~-~p~~lllDEP 118 (166)
T cd03223 102 FARLLLH-KPKFVFLDEA 118 (166)
T ss_pred HHHHHHc-CCCEEEEECC
Confidence 6667776 7888999975
No 391
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.59 E-value=0.049 Score=51.30 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhch
Q 045887 156 IGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+.+.|++|.||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998873
No 392
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.58 E-value=0.06 Score=50.43 Aligned_cols=86 Identities=13% Similarity=0.242 Sum_probs=49.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCC-------CCCCCchH-----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKL-------SPTKDEDK----- 219 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~----- 219 (382)
-..++|+|..|+|||||.+.+.+. ... +..+..-+.. ..+..++.......-+. ...+....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~---~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG---TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC---CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 468999999999999999998876 221 2233333333 34555666655554221 11111111
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 ~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++.. ++.+|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233344422 59999999998
No 393
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.012 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+.+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999883
No 394
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.56 E-value=0.029 Score=51.49 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=27.7
Q ss_pred HHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 144 VWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 144 l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...++...+..++.|.|.+|.|||||+..+.+.
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334445567899999999999999999999887
No 395
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.55 E-value=0.017 Score=49.60 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=28.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEE
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVT 191 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 191 (382)
.+++.|+|+.|+|||||+..+... ....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~---~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE---FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH---STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh---cccccccceeec
Confidence 478999999999999999999887 456665444444
No 396
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.55 E-value=0.013 Score=49.56 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..++++|+|..|+|||||+..+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999998873
No 397
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.017 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|..|+|||||++.++--
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 468999999999999999999654
No 398
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.54 E-value=0.012 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|.|.+|+||||+|+.++.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 399
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.16 Score=51.96 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=80.9
Q ss_pred CchHHHHHHHHHHhcCC---------CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 135 RNTKKIVKKVWEDLMGD---------KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 135 ~gr~~~~~~l~~~l~~~---------~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
.+++..+..+.+.+.-. -..++.++|.+|+||||+++.++..+...--.++|.-.++-+...+...+..-.
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f 483 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIF 483 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHH
Confidence 34555555666666432 246899999999999999999999842222223333333333333333332222
Q ss_pred HHHh---------------CCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---CCC-eEEEecc---c-------cC
Q 045887 206 ATAL---------------KLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI---DNH-MFCWGLR---S-------MG 256 (382)
Q Consensus 206 ~~~l---------------~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---~~g-~iivTtR---~-------~~ 256 (382)
.+.- +.+.. ..........++..+. +|++ .++ -++.||. . ..
T Consensus 484 ~~a~~~~pavifl~~~dvl~id~d-gged~rl~~~i~~~ls--------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f 554 (953)
T KOG0736|consen 484 SRARRCSPAVLFLRNLDVLGIDQD-GGEDARLLKVIRHLLS--------NEDFKFSCPPVIVVATTSSIEDLPADIQSLF 554 (953)
T ss_pred HHHhhcCceEEEEeccceeeecCC-CchhHHHHHHHHHHHh--------cccccCCCCceEEEEeccccccCCHHHHHhh
Confidence 2211 11111 1111122222222222 5666 334 4444544 1 11
Q ss_pred ceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 045887 257 CEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 303 (382)
Q Consensus 257 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 303 (382)
.+.++++.+++++-.++|+..+..... +....-+.++.+|.|.
T Consensus 555 ~~ei~~~~lse~qRl~iLq~y~~~~~~----n~~v~~k~~a~~t~gf 597 (953)
T KOG0736|consen 555 LHEIEVPALSEEQRLEILQWYLNHLPL----NQDVNLKQLARKTSGF 597 (953)
T ss_pred hhhccCCCCCHHHHHHHHHHHHhcccc----chHHHHHHHHHhcCCC
Confidence 256799999999999999887643321 1122334566666543
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.51 E-value=0.011 Score=49.02 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|.++|++|+||||+|+.++..
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999877
No 401
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.50 E-value=0.012 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999887
No 402
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.50 E-value=0.066 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999776
No 403
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.49 E-value=0.1 Score=51.53 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=51.6
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHHhchhcc-----cCCCCceEEEEeCCCCCHHHHHHHHHHHhCC-C-------CCCCch
Q 045887 153 VTKIGVWGMGGIGKTAIM-RHINNRPQEE-----TNEFSDVIWVTVSQPLDLVKLQAEIATALKL-S-------PTKDED 218 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~-------~~~~~~ 218 (382)
-..++|.|-.|+|||+|| -.+.+. ..+ .++-+.++++-+++..+...-+...+.+-+. . ..+...
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ-~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQ-VRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhh-hhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 468899999999999997 556665 321 1233457788888765543334444444331 1 111111
Q ss_pred HH-----HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 219 KV-----RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 219 ~~-----~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.. -....+-+++++ ++.+|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 11 112233344422 49999999999
No 404
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.49 E-value=0.035 Score=52.08 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=36.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEI 205 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 205 (382)
-..++|.|..|+|||+|++.+++. .+-+.++++-+++.. ...+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~-----~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKY-----SNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhC-----CCCCEEEEEEeCCChHHHHHHHHHH
Confidence 468999999999999999999887 223467888887654 345566554
No 405
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.49 E-value=0.0089 Score=50.17 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|.++|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999887
No 406
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.49 E-value=2.8 Score=41.06 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=36.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
-.++.|-|.+|+|||++|..++.... .... ..++|++.. .+..++...++...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a-~~~g-~~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVA-LREG-KPVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH-HhCC-CcEEEEECC--CCHHHHHHHHHHHH
Confidence 36889999999999999999986621 1222 246676543 46677777776654
No 407
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.48 E-value=0.012 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|+|++|+|||||++.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999887
No 408
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.48 E-value=0.05 Score=50.79 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=32.7
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++........++.++..+ +.|.|.|.+|+||||+|+.++..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHH
Confidence 3555556666677777543 46999999999999999999887
No 409
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.48 E-value=0.019 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+++.+.|-||+||||+|...+-.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 689999999999999998876653
No 410
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.47 E-value=0.038 Score=52.51 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=44.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
....+.|.|+.|.||||+.+.+.+. ........++. +.++... ........+... ....+.......+...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~---i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~-evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDY---INKNAAGHIIT-IEDPIEY--VHRNKRSLINQR-EVGLDTLSFANALRAALR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHh---hCcCCCCEEEE-EcCChhh--hccCccceEEcc-ccCCCCcCHHHHHHHhhc
Confidence 3478999999999999999998876 33333344443 2222111 000000000000 001111223445556666
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
. .+=.|++|.+
T Consensus 194 ~-~pd~i~vgEi 204 (343)
T TIGR01420 194 E-DPDVILIGEM 204 (343)
T ss_pred c-CCCEEEEeCC
Confidence 6 7888888888
No 411
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.47 E-value=0.012 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999776
No 412
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.46 E-value=0.016 Score=52.00 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.8
Q ss_pred EEeCCCCcHHHHHHHHHhch
Q 045887 158 VWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 158 I~G~gGvGKTtLa~~v~~~~ 177 (382)
|+|++|+||||+++.+.+.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999883
No 413
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.46 E-value=0.086 Score=51.61 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=54.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 219 (382)
.-..++|+|.+|+|||||+.+++... .. ++-+.++++-+++.. .+.++.+.+...-.. ...+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34789999999999999999987762 11 112456677776643 456677776654221 11111111
Q ss_pred -HHHHHHHHHHHh--CCCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLK--VKKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~--~~kr~LlVlDdv 243 (382)
......+.++++ .++.+||++|++
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecch
Confidence 122233445552 249999999998
No 414
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.43 E-value=0.024 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++.+.|.|||||||+|...+-.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~ 25 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK 25 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH
Confidence 478999999999999999987666
No 415
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.43 E-value=0.096 Score=43.07 Aligned_cols=106 Identities=13% Similarity=0.195 Sum_probs=76.4
Q ss_pred ccccHHH-HHhhhhhhhhhhcccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Q 045887 3 FIGPILE-IFKCVCPPVCKYVQDHRKLDENMKNLERVLQEFNSQKEDIEATLKAEGDRGKKPRTEVKNWLQNLQRINSKA 81 (382)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~~~ae~~~~~~~~~~v~~Wl~~l~~~~y~~ 81 (382)
+.|++++ +++.+...+.+.......++.-+++|...++.|..++.+|+..=. ..+..-+.-++++.+...++
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~-------eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNV-------ELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhh-------hcCCchhHHHHHHHHHHHHH
Confidence 3466666 666777767777777777788888899999999998888763211 11222266778888889999
Q ss_pred HHHHHHHhhcCc---cccccchHHHHHHHHHHHHHHh
Q 045887 82 QSIEQEVKKRKY---FLCARLGKDVDAKIQEMKDCHQ 115 (382)
Q Consensus 82 ed~~d~~~~~~~---~~~~~~~~~i~~~~~~l~~~~~ 115 (382)
+++++.+...+. +..++..++|+++.+.+....+
T Consensus 79 ~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 79 KELVEKCSKVRRWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHhccccHHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 999999876554 3456778888888888877654
No 416
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.013 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999998776
No 417
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.055 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+..++|||++|.|||-||+.|+..
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~ 189 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAAT 189 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHh
Confidence 568999999999999999999988
No 418
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.41 E-value=0.032 Score=48.18 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+|+|.|+.|+||||+++.+++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999884
No 419
>PRK13975 thymidylate kinase; Provisional
Probab=95.40 E-value=0.013 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..|.|.|+.|+||||+++.+++.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999983
No 420
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.40 E-value=0.012 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHHhch
Q 045887 156 IGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~~ 177 (382)
|.|.|.+|+|||||++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998884
No 421
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.39 E-value=0.041 Score=53.02 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=32.9
Q ss_pred ccCchHHHHHHHHHHhcC--------------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMG--------------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~--------------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.+..++.+..++.+ ...+.|.++|++|+|||+||+.++..
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356667766666655522 01467899999999999999999887
No 422
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.38 E-value=0.058 Score=52.26 Aligned_cols=87 Identities=13% Similarity=0.252 Sum_probs=49.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHHhCC-------CCCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATALKL-------SPTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~---- 219 (382)
.-..++|+|..|+|||||+..+.+. .. .+..+...+++. ....++...+...-.. ...+....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~---~~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARY---TE--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcC---CC--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 3468999999999999999988776 21 233344455553 3345555555443111 11111111
Q ss_pred -HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.++++. ++++|+++||+
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122233444432 48999999998
No 423
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.38 E-value=0.1 Score=51.00 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=55.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKLS-------PTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 219 (382)
.-..++|.|.+|+|||||+.++.... ..++-..++++-+++.. ...+++..+...-... ..+....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~--~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI--AKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH--HhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34789999999999999999988762 11222456777776643 4566777665432111 1111111
Q ss_pred -HHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
......+.++++. ++.+||++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 1223345566643 48999999999
No 424
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.37 E-value=0.044 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+=+-|||..|.|||.|.-.+|+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~l 86 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSL 86 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhC
Confidence 45778999999999999999999984
No 425
>PRK13948 shikimate kinase; Provisional
Probab=95.37 E-value=0.016 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999887
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.36 E-value=0.073 Score=55.93 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+..+++|+|+.|.|||||.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999998655
No 427
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.35 E-value=0.014 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|.|+|+.|+||||+++.+++.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 56999999999999999999887
No 428
>PLN02924 thymidylate kinase
Probab=95.32 E-value=0.089 Score=46.57 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
...|+|-|..|+||||+++.+++.+. ...+....+-..+......+..+.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~--~~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLK--GLGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCceeeeCCCCCChHHHHHHHHHh
Confidence 46899999999999999999999842 233443222211222334555555554
No 429
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.31 E-value=0.016 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+.|+|+|-||+||||++..++..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 478999999999999999998875
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.31 E-value=0.14 Score=53.97 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
+.+++.|+|+.+.||||+.+.+.-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457899999999999999998853
No 431
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.31 E-value=0.85 Score=44.83 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=36.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
-.++.|-|.+|+|||+++..++.+... ... ..++|+++.. +..++...++...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~-~~g-~~vl~~SlEm--~~~~i~~R~~~~~ 247 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAI-KEG-KPVAFFSLEM--SAEQLAMRMLSSE 247 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hCC-CeEEEEeCcC--CHHHHHHHHHHHh
Confidence 368999999999999999999877321 122 2466776544 5666766666543
No 432
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.31 E-value=0.098 Score=46.93 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+..|+|++|+|||+|+..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999875
No 433
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.30 E-value=0.052 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....++.|.|.+|+||||+|+.+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999999887
No 434
>PRK14526 adenylate kinase; Provisional
Probab=95.30 E-value=0.027 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|+|++|+||||+++.++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~ 23 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNE 23 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999876
No 435
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.29 E-value=0.068 Score=52.16 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=50.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC-------CCCCCchH-----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL-------SPTKDEDK----- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~----- 219 (382)
.-..++|.|..|+|||||++.++.. ... -..+++..-.......++.+.+...-+. ...+....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~---~~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARG---TQC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4478999999999999999999876 211 1234443333344555665655543221 11111111
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 ~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++++ ++.+|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122234444432 58999999998
No 436
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.28 E-value=0.05 Score=49.63 Aligned_cols=36 Identities=22% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 140 IVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 140 ~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++.|...+ .....+|.|.|..|.||||++..+.+.
T Consensus 68 ~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 68 NLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 334444443 334568999999999999999988776
No 437
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.28 E-value=0.017 Score=49.71 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999877
No 438
>PRK13946 shikimate kinase; Provisional
Probab=95.27 E-value=0.016 Score=49.82 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+.|.+.|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999988
No 439
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.25 E-value=0.14 Score=50.12 Aligned_cols=86 Identities=16% Similarity=0.297 Sum_probs=49.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHHhCC-------CCCCCchHH----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATALKL-------SPTKDEDKV---- 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~---- 220 (382)
-..++|+|..|+|||||++.+... . ..+.+++..+... ....++...+...-+. ...+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~---~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRF---T--EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---C--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 468999999999999999988765 1 1233334444433 3455555555544222 111111111
Q ss_pred -HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 -RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 -~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.....+-+++++ ++++||++||+
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecch
Confidence 122234444432 59999999999
No 440
>PLN02796 D-glycerate 3-kinase
Probab=95.22 E-value=0.096 Score=49.25 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-+|+|.|..|+|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999877
No 441
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.21 E-value=0.08 Score=51.52 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-..++|+|..|+|||||+..+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 4478999999999999999988765
No 442
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.20 E-value=0.12 Score=47.28 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=47.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
+..+++++|.+|+||||++..+...+. ..-..+.+++..... ....-+......++.+.....+.......+ +.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~---~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l-~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-HHH
Confidence 447999999999999999999877631 111235556544321 222223333344443322223444443333 333
Q ss_pred hC-CCeEEEEEEcC
Q 045887 231 KV-KKKFVLILDYI 243 (382)
Q Consensus 231 ~~-~kr~LlVlDdv 243 (382)
.. .+.=++++|..
T Consensus 150 ~~~~~~D~ViIDt~ 163 (270)
T PRK06731 150 KEEARVDYILIDTA 163 (270)
T ss_pred HhcCCCCEEEEECC
Confidence 32 24567888865
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.20 E-value=0.1 Score=50.75 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=50.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCC-------CCCCchH-----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLS-------PTKDEDK----- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 219 (382)
.-..++|+|..|+|||||+..++.. ... ...++...-.......+.+...+..-+.. ..+....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~---~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKN---AKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc---CCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 3468899999999999999999876 221 12233332233456666766655543221 1111111
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 ~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++++ ++..||++|+.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecch
Confidence 1122233344432 59999999999
No 444
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.19 E-value=0.16 Score=43.99 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|..|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999876
No 445
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.014 Score=47.48 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
.+-|.|.|.+|+|||||+..++... . .-|+++|.-....++....=.... ....+.+.....|-..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~---c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYK---CHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhccccccc---CccccHHHHHHHHHHHHhc
Confidence 4678999999999999999998651 1 346776653322222222111111 1233555566666666554
No 446
>PRK04182 cytidylate kinase; Provisional
Probab=95.16 E-value=0.017 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|.|.|+.|+||||+|+.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999887
No 447
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=95.16 E-value=0.11 Score=42.67 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=31.1
Q ss_pred HHHHHhcCCCceEEEEEeCCCCcHHH--HHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 143 KVWEDLMGDKVTKIGVWGMGGIGKTA--IMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 143 ~l~~~l~~~~~~vv~I~G~gGvGKTt--La~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
-+-+.+..++.++|+|-||+-||||. +|..||.. .-|.-+|..
T Consensus 44 FmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAn----------KrW~f~SST 88 (192)
T PF11868_consen 44 FMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCAN----------KRWLFLSST 88 (192)
T ss_pred HHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcC----------ceEEEeeHH
Confidence 33444567788999999999999995 55556555 458777653
No 448
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.15 E-value=0.073 Score=51.84 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccC--CCC---------ceEEEEeCCCCCHHHHHHHHHHHhC-CC-------
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETN--EFS---------DVIWVTVSQPLDLVKLQAEIATALK-LS------- 212 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~------- 212 (382)
.-..++|+|-+|+|||||+..+.+. ..... -.| .+++.-+++.....+.+...+..-+ ..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~-~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQ-AGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHh-hccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 3478999999999999999999877 32100 011 4567777777666666666665544 11
Q ss_pred CCCCchH-----HHHHHHHHHHHh--CCCeEEEEEEcC
Q 045887 213 PTKDEDK-----VRRARRLLGKLK--VKKKFVLILDYI 243 (382)
Q Consensus 213 ~~~~~~~-----~~~~~~l~~~l~--~~kr~LlVlDdv 243 (382)
..+.... ......+.++++ .++.+|+++||+
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 112233455555 259999999999
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.14 E-value=0.055 Score=52.90 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH--hCC-----CCCCCch-----
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA--LKL-----SPTKDED----- 218 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~-----~~~~~~~----- 218 (382)
..-..++|+|..|+|||||++.+... ... -.+++++.-....+..++....+.. +.. ...+...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~---~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARN---TSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc---cCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 34579999999999999999988776 211 1234444333333444443332221 110 1111111
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 219 KVRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 219 ~~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.......+.+++++ ++.+||++||+
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCh
Confidence 11222234444432 59999999998
No 450
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.14 E-value=0.2 Score=47.22 Aligned_cols=36 Identities=19% Similarity=0.511 Sum_probs=27.8
Q ss_pred HHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 142 KKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 142 ~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..|++.+. .++..+|+|.|.+|+|||||+..+...+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 3467899999999999999999988773
No 451
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.14 E-value=0.59 Score=48.44 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred cCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|....+.++.+.+.. ....-|.|+|..|+||+++|+.+.+.
T Consensus 327 l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 327 MPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred eEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45555555555544431 12234789999999999999999876
No 452
>PRK06820 type III secretion system ATPase; Validated
Probab=95.13 E-value=0.12 Score=50.50 Aligned_cols=86 Identities=13% Similarity=0.249 Sum_probs=47.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchHH----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDKV---- 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~---- 220 (382)
-..++|+|.+|+|||||++.++.. . +-+..++.-+++.. ...++....+..-.. ...+.....
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~---~--~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a 237 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCAD---S--AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKG 237 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhcc---C--CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHH
Confidence 368999999999999999988765 1 22334445555542 233333333221000 111111111
Q ss_pred -HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 -RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 -~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.....+.+++++ ++.+||++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (440)
T PRK06820 238 LSTATTIAEYFRDRGKKVLLMADSL 262 (440)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 122234444432 59999999999
No 453
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.13 E-value=0.017 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchh
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQ 178 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~ 178 (382)
++|+|.|-||+||||++..++..+.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la 25 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALA 25 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHH
Confidence 4789999999999999999888753
No 454
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.13 E-value=0.21 Score=51.90 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-..|+|+|..|+|||||++.+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999655
No 455
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.12 E-value=0.03 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
++|+|.|-||+||||++..++..+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 578888999999999999998885
No 456
>PLN02200 adenylate kinase family protein
Probab=95.12 E-value=0.019 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.101 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|.|++|+||||+|+.++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 457
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.11 E-value=0.015 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.2
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|+|.|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999754
No 458
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.10 E-value=0.053 Score=51.20 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=42.5
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHH
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQ 202 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 202 (382)
.+|.+..+..+...+..+ .-+.+.|.+|+|||+||+.++.. ... ..++|.+.......++.
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~---l~~---~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARA---LGL---PFVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHH---hCC---CeEEEecCCCCCHHHhc
Confidence 556677777766555544 46789999999999999999988 332 24566666665555543
No 459
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.09 E-value=0.02 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|..|+|||||.+.++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 68999999999999999999776
No 460
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.09 E-value=0.02 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
..+|+|+|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998855
No 461
>PRK13768 GTPase; Provisional
Probab=95.08 E-value=0.03 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..++.|.|.||+||||++..+...+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 3588999999999999999988773
No 462
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.08 E-value=0.087 Score=51.66 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=54.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC--ceEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCch----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS--DVIWVTVSQP-LDLVKLQAEIATALKLS-------PTKDED---- 218 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~---- 218 (382)
-..++|+|-.|+|||||+..+.+. ....+.+. .++++-+++. ....++++.+...-... ..+.+.
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~-~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQ-ATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHh-hcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 368999999999999999999887 32221121 4566666654 34566766666432211 111111
Q ss_pred -HHHHHHHHHHHHh--CCCeEEEEEEcC
Q 045887 219 -KVRRARRLLGKLK--VKKKFVLILDYI 243 (382)
Q Consensus 219 -~~~~~~~l~~~l~--~~kr~LlVlDdv 243 (382)
..-....+.++++ .++++||++||+
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 1122334556666 258999999999
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.06 E-value=0.021 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHIN 174 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~ 174 (382)
-..++|.|+.|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999975
No 464
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.06 E-value=0.17 Score=49.31 Aligned_cols=87 Identities=13% Similarity=0.219 Sum_probs=49.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCC-------CCCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKL-------SPTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~---- 219 (382)
.-..++|+|.+|+|||||.+.++.. .. .+......+.. .....+...+....... ...+....
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~---~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARG---AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCC---CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 4578899999999999999999876 22 22333333433 34455555554433211 11111111
Q ss_pred -HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++.. ++++|+++|++
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122233344432 58999999998
No 465
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.019 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--.|+|+|+.|+|||||.+.++--
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999653
No 466
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.05 E-value=0.028 Score=52.21 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=24.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhchh
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRPQ 178 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~~ 178 (382)
+.+.+++++.|-||+||||++..++.-+.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La 31 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMA 31 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHH
Confidence 45679999999999999999988877743
No 467
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.03 E-value=0.023 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+.+.|+|++|+|||||+..+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4578999999999999999999754
No 468
>PRK06761 hypothetical protein; Provisional
Probab=95.02 E-value=0.041 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
++|.|.|++|+||||+++.+++.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999883
No 469
>PRK14532 adenylate kinase; Provisional
Probab=95.00 E-value=0.018 Score=49.54 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|.+.|++|+||||+|+.++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999877
No 470
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.99 E-value=0.02 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|+|.|..|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 471
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.34 Score=41.27 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+.|.|..|+|||||.+.++--
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcc
Confidence 57899999999999999999765
No 472
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.98 E-value=0.018 Score=49.65 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 473
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.98 E-value=0.14 Score=49.65 Aligned_cols=87 Identities=13% Similarity=0.232 Sum_probs=48.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHHhCC-------CCCCCchH----
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATALKL-------SPTKDEDK---- 219 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~---- 219 (382)
.-..++|+|..|+|||||++.+++. ... +..+..-+++. ....++....+.+-+. ...+....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~---~~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN---AKA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 3478999999999999999988776 222 22222233433 2444555544433111 11111111
Q ss_pred -HHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 220 -VRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 220 -~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
......+.+++++ ++.+||++||+
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 1222333444432 59999999998
No 474
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.97 E-value=0.02 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|.|+|++|+||||+++.+++.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45888999999999999999887
No 475
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.95 E-value=0.021 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
++|+|+|-||+||||++..++..+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 578899999999999999988875
No 476
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.94 E-value=0.098 Score=49.11 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcC---CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 139 KIVKKVWEDLMG---DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 139 ~~~~~l~~~l~~---~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+.|.+.+.+ +...+|+|.|.=|+|||++.+.+.+.+
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444556666654 457899999999999999999998884
No 477
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.94 E-value=0.026 Score=44.28 Aligned_cols=21 Identities=14% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHhc
Q 045887 156 IGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~ 176 (382)
|+|.|.+|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 478
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.024 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.++.|.|++|+|||||++.+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367899999999999999999887
No 479
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.93 E-value=0.023 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|..|.|||||++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999887
No 480
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.93 E-value=0.02 Score=50.44 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-|+|+|++|+|||||+..+.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56899999999999999999877
No 481
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.93 E-value=0.039 Score=52.01 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=35.8
Q ss_pred ccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
....+|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-+
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34467888888877655544444568999999999999999997763
No 482
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.1 Score=47.23 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+...+-+|+|..|.|||||.+.+.--
T Consensus 22 p~~GvTAlFG~SGsGKTslin~IaGL 47 (352)
T COG4148 22 PARGITALFGPSGSGKTSLINMIAGL 47 (352)
T ss_pred CCCceEEEecCCCCChhhHHHHHhcc
Confidence 45589999999999999999999643
No 483
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.92 E-value=0.049 Score=51.41 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=35.9
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|-+..+..|+-.+-++...-+.|.|..|+|||||++.+..-
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 35787888878766666666667889999999999999999766
No 484
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.91 E-value=0.23 Score=50.18 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-..++|+|..|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999765
No 485
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.91 E-value=0.27 Score=49.46 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=33.1
Q ss_pred cCchHHHHHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|....+.++.+.+. .....-|.|.|..|+||+++|+.+++.
T Consensus 221 iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred eeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 6677777777766653 233467899999999999999999875
No 486
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.89 E-value=0.018 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.|.+.|++|+||||+|+.+...+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998874
No 487
>PRK15453 phosphoribulokinase; Provisional
Probab=94.88 E-value=0.027 Score=51.31 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999876
No 488
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.88 E-value=0.044 Score=54.74 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcC-----CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 138 KKIVKKVWEDLMG-----DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 138 ~~~~~~l~~~l~~-----~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+-++++..||.+ ...+++.+.|++|+||||.++.+++.
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 3445666666643 23579999999999999999999887
No 489
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.85 E-value=0.025 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+-|.++||.|+||||+.+.+++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHH
Confidence 45889999999999999999988
No 490
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.84 E-value=0.04 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++.|.|+.|.||||+.+.++.-
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988644
No 491
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.84 E-value=0.19 Score=42.44 Aligned_cols=23 Identities=30% Similarity=0.146 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|-|++-.|.||||.|..++-+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r 28 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR 28 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 57888888999999999988777
No 492
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.83 E-value=0.047 Score=51.64 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=38.3
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+|-++.+..|+..+.++...-|.|.|..|+||||+|+.+++-+
T Consensus 18 ~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 367878888888888888888778899999999999999997764
No 493
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.83 E-value=0.072 Score=46.33 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=41.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CchHHHHHHHHH
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK--DEDKVRRARRLL 227 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~ 227 (382)
+..+.++.+.|.+|.||||++..+...+ . ....+.++...-.....-...+...-...... ......+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~---~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEF---G--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhc---c--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999997762 1 34456665332111111112222221111100 112233445555
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
+.... +++=+|+|..
T Consensus 87 ~~a~~-~~~nii~E~t 101 (199)
T PF06414_consen 87 EYAIE-NRYNIIFEGT 101 (199)
T ss_dssp HHHHH-CT--EEEE--
T ss_pred HHHHH-cCCCEEEecC
Confidence 55555 7778888876
No 494
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.82 E-value=0.043 Score=47.68 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 145 WEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 145 ~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+..+..++-++..|.|.+|+||||++..+...+
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 333333344789999999999999999988773
No 495
>PLN02165 adenylate isopentenyltransferase
Probab=94.79 E-value=0.026 Score=52.72 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred cCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 149 MGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 149 ~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+....+++|+|+.|+|||+||..++..
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4445679999999999999999999887
No 496
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.78 E-value=0.023 Score=47.37 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+++|+|+.|+|||||+..+...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999883
No 497
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.76 E-value=0.025 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|+.|+|||||.+.++.-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 479999999999999999999775
No 498
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.76 E-value=0.062 Score=48.98 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHhhhhhhhhhhcccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 045887 10 IFKCVCPPVCKYVQDHRKLDENMKNLERVLQEFNSQKEDIEATLKAEGDRGKKPRTEVKNWLQNLQRINSKAQSIEQEVK 89 (382)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~~~ae~~~~~~~~~~v~~Wl~~l~~~~y~~ed~~d~~~ 89 (382)
+++.+-.....+...+.-++.+++-++.+++.++.+|+.+ +++ ...+. ...+....++...||++|+++|.+-
T Consensus 301 lL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V-----~ee-~~nkh-~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 301 LLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV-----VEE-PHNKH-DTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH-----Hhc-cchhh-hhhhhHHHHHHHHHhheeeeeehhh
Confidence 4555655666666666777777778888888888887775 343 22333 3489999999999999999999876
Q ss_pred hcCc
Q 045887 90 KRKY 93 (382)
Q Consensus 90 ~~~~ 93 (382)
.+..
T Consensus 374 ~k~~ 377 (402)
T PF12061_consen 374 SKSV 377 (402)
T ss_pred cCCC
Confidence 5544
No 499
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.76 E-value=0.022 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHh
Q 045887 155 KIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~ 175 (382)
+|+|+|..|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999965
No 500
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=94.75 E-value=0.12 Score=51.27 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=50.4
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHHhchhcccCCCCce-EEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchHHH-
Q 045887 153 VTKIGVWGMGGIGKTAIM-RHINNRPQEETNEFSDV-IWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDKVR- 221 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~- 221 (382)
-..++|.|.+|+|||+|| ..+.+. ..-+.+ +++-+++.. .+.++...+...-.. ...+......
T Consensus 162 GQR~~I~g~~g~GKt~Lal~~i~~~-----~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~ 236 (502)
T PRK13343 162 GQRELIIGDRQTGKTAIAIDAIINQ-----KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQY 236 (502)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhh-----cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHH
Confidence 468999999999999996 555554 233443 677777654 355666666543211 1111111111
Q ss_pred ----HHHHHHHHHhC-CCeEEEEEEcC
Q 045887 222 ----RARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 222 ----~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
....+-+++++ ++.+|||+||+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (502)
T PRK13343 237 LAPFAGCAIAEYFRDQGQDALIVYDDL 263 (502)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 11233344432 59999999999
Done!