Query 045887
Match_columns 382
No_of_seqs 368 out of 2667
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.1E-40 2.1E-44 329.0 16.4 231 135-377 131-406 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 9.5E-34 3.2E-38 309.1 23.4 247 127-381 119-400 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.9E-34 3.4E-38 291.2 15.0 221 134-380 130-391 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.5E-32 3.3E-36 272.2 21.7 245 127-380 119-399 (591)
5 2qen_A Walker-type ATPase; unk 99.6 2E-13 6.9E-18 128.2 19.6 174 129-315 9-250 (350)
6 2fna_A Conserved hypothetical 99.5 2.9E-13 1E-17 127.4 18.7 177 130-323 11-262 (357)
7 1w5s_A Origin recognition comp 99.5 1.8E-13 6E-18 131.7 16.9 180 131-311 21-266 (412)
8 3qfl_A MLA10; coiled-coil, (CC 99.5 5.4E-14 1.9E-18 110.1 6.5 75 10-90 6-80 (115)
9 2qby_A CDC6 homolog 1, cell di 99.4 1.3E-11 4.3E-16 117.4 19.9 199 131-330 19-272 (386)
10 2v1u_A Cell division control p 99.4 4.9E-11 1.7E-15 113.4 21.1 221 131-368 18-300 (387)
11 2qby_B CDC6 homolog 3, cell di 99.4 6.8E-11 2.3E-15 112.5 21.9 220 132-369 20-295 (384)
12 1njg_A DNA polymerase III subu 99.3 8.1E-11 2.8E-15 104.0 18.0 174 130-314 21-231 (250)
13 2chg_A Replication factor C sm 99.3 1.2E-10 4E-15 101.6 18.2 162 130-312 15-205 (226)
14 1fnn_A CDC6P, cell division co 99.3 1.5E-10 5E-15 110.3 20.3 175 132-310 17-246 (389)
15 1sxj_B Activator 1 37 kDa subu 99.1 1.9E-09 6.5E-14 99.8 15.5 162 130-311 19-210 (323)
16 3te6_A Regulatory protein SIR3 99.0 9.4E-09 3.2E-13 94.7 16.8 145 134-278 22-211 (318)
17 1iqp_A RFCS; clamp loader, ext 99.0 1.1E-08 3.7E-13 94.9 16.0 162 130-312 23-213 (327)
18 2chq_A Replication factor C sm 98.8 1E-07 3.5E-12 87.9 15.1 158 130-310 15-203 (319)
19 1jr3_A DNA polymerase III subu 98.8 1.5E-07 5.2E-12 88.8 16.3 167 130-311 14-221 (373)
20 1jbk_A CLPB protein; beta barr 98.8 5.2E-08 1.8E-12 82.5 11.9 47 131-177 21-67 (195)
21 1hqc_A RUVB; extended AAA-ATPa 98.7 2.4E-06 8.2E-11 78.9 20.5 174 130-314 10-214 (324)
22 3bos_A Putative DNA replicatio 98.7 1.1E-07 3.9E-12 83.7 10.8 148 132-311 28-217 (242)
23 1sxj_D Activator 1 41 kDa subu 98.6 3.9E-07 1.3E-11 85.3 14.5 169 131-310 36-234 (353)
24 3pvs_A Replication-associated 98.5 1.3E-06 4.4E-11 84.6 15.2 155 130-310 24-214 (447)
25 3h4m_A Proteasome-activating n 98.5 2.1E-06 7E-11 78.0 15.7 174 132-331 17-259 (285)
26 1sxj_E Activator 1 40 kDa subu 98.5 1.4E-06 4.7E-11 81.7 14.7 173 130-311 12-237 (354)
27 1sxj_A Activator 1 95 kDa subu 98.5 1.7E-06 5.7E-11 85.6 15.4 166 131-310 38-252 (516)
28 3pfi_A Holliday junction ATP-d 98.5 8.8E-06 3E-10 75.7 18.1 170 130-310 27-226 (338)
29 2z4s_A Chromosomal replication 98.4 1.7E-06 5.7E-11 83.8 12.3 171 140-330 116-332 (440)
30 3eie_A Vacuolar protein sortin 98.4 1.6E-05 5.6E-10 73.5 17.2 154 132-310 18-227 (322)
31 3b9p_A CG5977-PA, isoform A; A 98.4 2.6E-05 8.8E-10 71.1 18.2 156 131-311 20-233 (297)
32 1a5t_A Delta prime, HOLB; zinc 98.4 1.5E-05 5.3E-10 74.1 16.9 146 138-310 8-204 (334)
33 3d8b_A Fidgetin-like protein 1 98.4 2.5E-05 8.6E-10 73.3 18.5 156 132-312 84-296 (357)
34 1sxj_C Activator 1 40 kDa subu 98.3 1.3E-05 4.4E-10 74.7 16.2 157 132-309 25-210 (340)
35 1xwi_A SKD1 protein; VPS4B, AA 98.3 3.8E-05 1.3E-09 71.0 19.0 154 134-311 14-223 (322)
36 2p65_A Hypothetical protein PF 98.3 8.9E-07 3E-11 74.5 6.9 47 131-177 21-67 (187)
37 3uk6_A RUVB-like 2; hexameric 98.3 7.3E-06 2.5E-10 77.1 13.8 46 131-176 43-93 (368)
38 2qz4_A Paraplegin; AAA+, SPG7, 98.3 6E-05 2E-09 67.1 18.9 134 153-310 39-221 (262)
39 3u61_B DNA polymerase accessor 98.3 1.1E-05 3.7E-10 74.6 14.3 154 130-309 24-214 (324)
40 1d2n_A N-ethylmaleimide-sensit 98.2 4.8E-05 1.6E-09 68.4 16.9 152 150-331 61-262 (272)
41 3vfd_A Spastin; ATPase, microt 98.2 4.9E-05 1.7E-09 72.2 17.7 156 131-311 114-326 (389)
42 4b4t_J 26S protease regulatory 98.2 3.1E-05 1.1E-09 73.1 15.8 172 134-331 150-390 (405)
43 1l8q_A Chromosomal replication 98.2 3.1E-05 1.1E-09 71.6 15.6 141 141-306 23-203 (324)
44 2qp9_X Vacuolar protein sortin 98.2 3.5E-05 1.2E-09 72.3 14.9 153 133-310 52-260 (355)
45 4b4t_M 26S protease regulatory 98.2 2.6E-05 8.8E-10 74.7 13.8 145 134-304 183-387 (434)
46 3syl_A Protein CBBX; photosynt 98.1 3.9E-05 1.3E-09 70.2 14.4 44 134-177 33-91 (309)
47 4b4t_L 26S protease subunit RP 98.1 6.3E-05 2.2E-09 72.0 16.0 146 134-305 183-388 (437)
48 3cf0_A Transitional endoplasmi 98.1 0.0001 3.4E-09 67.5 16.8 148 133-306 16-223 (301)
49 1qvr_A CLPB protein; coiled co 98.1 4E-05 1.4E-09 80.3 15.0 132 132-277 170-344 (854)
50 4b4t_I 26S protease regulatory 98.1 6.9E-05 2.4E-09 71.1 15.1 145 134-304 184-388 (437)
51 2w58_A DNAI, primosome compone 98.1 1.2E-05 4.3E-10 68.8 9.2 52 138-192 35-90 (202)
52 2zan_A Vacuolar protein sortin 98.1 0.00012 4.2E-09 70.7 17.3 155 132-310 134-344 (444)
53 4b4t_H 26S protease regulatory 98.1 4.3E-05 1.5E-09 73.2 13.3 145 134-304 211-415 (467)
54 3pxg_A Negative regulator of g 98.1 4.7E-05 1.6E-09 74.2 13.8 130 133-279 181-339 (468)
55 4b4t_K 26S protease regulatory 98.1 0.00019 6.5E-09 68.6 17.5 43 134-176 174-229 (428)
56 3n70_A Transport activator; si 98.0 7.3E-06 2.5E-10 66.5 6.6 43 134-176 3-47 (145)
57 3ec2_A DNA replication protein 98.0 9E-06 3.1E-10 68.4 7.4 88 137-243 19-109 (180)
58 1r6b_X CLPA protein; AAA+, N-t 97.9 0.00021 7.2E-09 73.9 16.5 132 133-278 187-362 (758)
59 1lv7_A FTSH; alpha/beta domain 97.9 0.00081 2.8E-08 59.7 17.4 44 133-176 13-68 (257)
60 2gno_A DNA polymerase III, gam 97.8 0.00017 5.8E-09 66.0 12.6 123 138-278 3-152 (305)
61 3pxi_A Negative regulator of g 97.8 0.00022 7.5E-09 73.7 14.6 129 133-278 181-338 (758)
62 3hu3_A Transitional endoplasmi 97.8 0.00059 2E-08 66.6 16.3 151 134-310 206-414 (489)
63 1in4_A RUVB, holliday junction 97.7 0.002 7E-08 59.6 18.2 70 259-331 174-251 (334)
64 3cf2_A TER ATPase, transitiona 97.7 0.00036 1.2E-08 71.8 13.8 128 153-306 238-409 (806)
65 2kjq_A DNAA-related protein; s 97.7 5.2E-05 1.8E-09 61.7 5.5 40 152-194 35-74 (149)
66 2ce7_A Cell division protein F 97.6 0.0016 5.3E-08 63.3 16.2 173 133-331 17-257 (476)
67 3co5_A Putative two-component 97.6 7.2E-05 2.5E-09 60.4 5.5 43 134-176 6-50 (143)
68 4fcw_A Chaperone protein CLPB; 97.6 0.00038 1.3E-08 63.5 11.0 58 134-194 19-85 (311)
69 1ojl_A Transcriptional regulat 97.5 0.00031 1.1E-08 64.3 8.6 43 134-176 4-48 (304)
70 2qgz_A Helicase loader, putati 97.4 0.00017 5.8E-09 66.2 5.3 41 137-177 133-176 (308)
71 3hr8_A Protein RECA; alpha and 97.3 0.0021 7.2E-08 59.9 12.2 83 153-243 61-148 (356)
72 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00021 7.1E-09 65.3 4.8 66 154-243 124-191 (331)
73 2x8a_A Nuclear valosin-contain 97.2 0.0086 2.9E-07 53.7 15.0 22 155-176 46-67 (274)
74 1n0w_A DNA repair protein RAD5 97.2 0.0018 6.2E-08 56.6 10.3 89 153-243 24-128 (243)
75 2cvh_A DNA repair and recombin 97.2 0.0018 6.2E-08 55.6 10.1 83 153-243 20-114 (220)
76 3pxi_A Negative regulator of g 97.2 0.00064 2.2E-08 70.3 7.7 58 134-194 493-559 (758)
77 2z43_A DNA repair and recombin 97.2 0.0017 5.7E-08 59.9 9.7 90 153-243 107-212 (324)
78 1ixz_A ATP-dependent metallopr 97.1 0.018 6E-07 50.7 16.0 22 155-176 51-72 (254)
79 2xxa_A Signal recognition part 97.1 0.031 1E-06 53.5 18.6 26 152-177 99-124 (433)
80 1v5w_A DMC1, meiotic recombina 97.1 0.0031 1.1E-07 58.6 11.2 89 153-243 122-228 (343)
81 3dm5_A SRP54, signal recogniti 97.1 0.026 8.9E-07 54.0 17.3 26 152-177 99-124 (443)
82 1ypw_A Transitional endoplasmi 97.1 0.003 1E-07 65.6 11.4 43 134-176 206-261 (806)
83 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0019 6.5E-08 55.9 8.6 38 154-194 24-61 (235)
84 2i1q_A DNA repair and recombin 97.0 0.0023 7.9E-08 58.9 9.4 90 153-243 98-213 (322)
85 2zr9_A Protein RECA, recombina 97.0 0.0023 7.9E-08 59.6 9.1 83 153-243 61-148 (349)
86 3t15_A Ribulose bisphosphate c 97.0 0.001 3.4E-08 60.5 6.4 24 153-176 36-59 (293)
87 1xp8_A RECA protein, recombina 97.0 0.0027 9.1E-08 59.5 9.3 83 153-243 74-161 (366)
88 2ffh_A Protein (FFH); SRP54, s 96.9 0.034 1.2E-06 53.0 16.9 26 152-177 97-122 (425)
89 3io5_A Recombination and repai 96.9 0.0045 1.6E-07 56.4 9.7 84 154-243 29-120 (333)
90 1iy2_A ATP-dependent metallopr 96.9 0.012 4.2E-07 52.6 12.5 22 155-176 75-96 (278)
91 3m6a_A ATP-dependent protease 96.8 0.0084 2.9E-07 59.3 12.1 43 134-176 83-131 (543)
92 1u94_A RECA protein, recombina 96.8 0.0028 9.6E-08 59.1 8.1 83 153-243 63-150 (356)
93 1rz3_A Hypothetical protein rb 96.8 0.0017 5.7E-08 55.4 5.8 40 137-176 3-45 (201)
94 4a74_A DNA repair and recombin 96.8 0.0079 2.7E-07 51.9 10.3 45 153-197 25-72 (231)
95 2dhr_A FTSH; AAA+ protein, hex 96.7 0.024 8.3E-07 55.2 14.2 45 132-176 31-87 (499)
96 2c9o_A RUVB-like 1; hexameric 96.7 0.0066 2.3E-07 58.7 9.6 45 132-176 37-86 (456)
97 3c8u_A Fructokinase; YP_612366 96.6 0.0022 7.7E-08 54.9 5.4 39 139-177 6-46 (208)
98 3lda_A DNA repair protein RAD5 96.6 0.012 4.3E-07 55.6 10.8 90 153-243 178-282 (400)
99 2px0_A Flagellar biosynthesis 96.6 0.0092 3.1E-07 54.2 9.5 86 152-242 104-190 (296)
100 1r6b_X CLPA protein; AAA+, N-t 96.6 0.013 4.6E-07 60.3 11.8 43 134-176 460-511 (758)
101 3ice_A Transcription terminati 96.5 0.00086 2.9E-08 62.7 2.3 52 144-196 164-216 (422)
102 3bh0_A DNAB-like replicative h 96.5 0.018 6.2E-07 52.7 10.8 50 153-207 68-117 (315)
103 3kl4_A SRP54, signal recogniti 96.5 0.021 7.2E-07 54.5 11.5 26 152-177 96-121 (433)
104 3kb2_A SPBC2 prophage-derived 96.4 0.0016 5.3E-08 53.7 3.2 23 154-176 2-24 (173)
105 1ofh_A ATP-dependent HSL prote 96.4 0.0023 7.8E-08 58.1 4.4 43 134-176 17-73 (310)
106 2r6a_A DNAB helicase, replicat 96.4 0.036 1.2E-06 53.5 13.1 50 153-206 203-252 (454)
107 2dr3_A UPF0273 protein PH0284; 96.4 0.012 4.2E-07 51.2 9.0 39 153-194 23-61 (247)
108 1vma_A Cell division protein F 96.4 0.017 5.8E-07 52.6 10.0 87 152-243 103-195 (306)
109 2bjv_A PSP operon transcriptio 96.4 0.0046 1.6E-07 55.0 6.1 43 134-176 8-52 (265)
110 1qhx_A CPT, protein (chloramph 96.4 0.0018 6E-08 53.8 3.1 23 154-176 4-26 (178)
111 3lw7_A Adenylate kinase relate 96.4 0.0018 6.1E-08 53.3 3.1 22 154-176 2-23 (179)
112 2b8t_A Thymidine kinase; deoxy 96.3 0.0016 5.6E-08 56.5 2.6 85 153-243 12-98 (223)
113 2q6t_A DNAB replication FORK h 96.3 0.06 2.1E-06 51.7 14.0 52 153-208 200-251 (444)
114 1zp6_A Hypothetical protein AT 96.3 0.0026 8.8E-08 53.5 3.6 24 153-176 9-32 (191)
115 1ly1_A Polynucleotide kinase; 96.2 0.0028 9.5E-08 52.6 3.4 22 154-175 3-24 (181)
116 1pzn_A RAD51, DNA repair and r 96.2 0.027 9.2E-07 52.3 10.5 91 152-243 130-240 (349)
117 1kag_A SKI, shikimate kinase I 96.2 0.0023 7.9E-08 52.8 2.9 23 154-176 5-27 (173)
118 3vaa_A Shikimate kinase, SK; s 96.2 0.0028 9.7E-08 53.8 3.5 25 152-176 24-48 (199)
119 2ehv_A Hypothetical protein PH 96.2 0.011 3.8E-07 51.7 7.5 24 153-176 30-53 (251)
120 4a1f_A DNAB helicase, replicat 96.2 0.015 5.1E-07 53.7 8.6 49 154-207 47-95 (338)
121 3cf2_A TER ATPase, transitiona 96.2 0.0069 2.4E-07 62.3 6.8 42 135-176 480-534 (806)
122 2hf9_A Probable hydrogenase ni 96.2 0.0047 1.6E-07 53.3 4.9 35 142-176 27-61 (226)
123 3trf_A Shikimate kinase, SK; a 96.2 0.0027 9.3E-08 53.0 3.2 24 153-176 5-28 (185)
124 3uie_A Adenylyl-sulfate kinase 96.1 0.0035 1.2E-07 53.3 3.8 28 150-177 22-49 (200)
125 3e70_C DPA, signal recognition 96.1 0.074 2.5E-06 48.9 12.9 27 151-177 127-153 (328)
126 1j8m_F SRP54, signal recogniti 96.1 0.046 1.6E-06 49.5 11.3 87 153-242 98-188 (297)
127 1nks_A Adenylate kinase; therm 96.1 0.0033 1.1E-07 52.7 3.5 24 154-177 2-25 (194)
128 1qvr_A CLPB protein; coiled co 96.1 0.0056 1.9E-07 64.1 5.9 44 134-177 560-612 (854)
129 1kgd_A CASK, peripheral plasma 96.1 0.0033 1.1E-07 52.5 3.3 23 154-176 6-28 (180)
130 4eun_A Thermoresistant glucoki 96.1 0.0035 1.2E-07 53.3 3.5 26 151-176 27-52 (200)
131 2yvu_A Probable adenylyl-sulfa 96.1 0.004 1.4E-07 52.1 3.8 26 152-177 12-37 (186)
132 2wsm_A Hydrogenase expression/ 96.1 0.0043 1.5E-07 53.3 4.0 37 140-176 17-53 (221)
133 3t61_A Gluconokinase; PSI-biol 96.0 0.0029 9.9E-08 53.8 2.7 24 153-176 18-41 (202)
134 1sky_E F1-ATPase, F1-ATP synth 96.0 0.017 5.8E-07 55.5 8.3 88 154-243 152-254 (473)
135 2rhm_A Putative kinase; P-loop 96.0 0.0043 1.5E-07 52.1 3.7 24 153-176 5-28 (193)
136 1fx0_B ATP synthase beta chain 96.0 0.03 1E-06 54.0 9.9 90 152-243 164-275 (498)
137 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0086 2.9E-07 55.5 5.8 39 138-176 5-47 (359)
138 2ck3_D ATP synthase subunit be 96.0 0.051 1.8E-06 52.1 11.3 90 152-243 152-262 (482)
139 1zuh_A Shikimate kinase; alpha 95.9 0.0042 1.4E-07 51.0 3.3 25 152-176 6-30 (168)
140 1kht_A Adenylate kinase; phosp 95.9 0.0042 1.4E-07 52.0 3.3 24 154-177 4-27 (192)
141 1knq_A Gluconate kinase; ALFA/ 95.9 0.0046 1.6E-07 51.1 3.5 24 153-176 8-31 (175)
142 1uf9_A TT1252 protein; P-loop, 95.9 0.0055 1.9E-07 51.9 4.0 26 151-176 6-31 (203)
143 3tr0_A Guanylate kinase, GMP k 95.9 0.0043 1.5E-07 52.6 3.3 23 154-176 8-30 (205)
144 3iij_A Coilin-interacting nucl 95.9 0.0035 1.2E-07 52.1 2.7 24 153-176 11-34 (180)
145 3fwy_A Light-independent proto 95.9 0.0044 1.5E-07 56.8 3.6 41 151-194 46-86 (314)
146 1g8p_A Magnesium-chelatase 38 95.9 0.0044 1.5E-07 57.3 3.7 46 132-177 24-69 (350)
147 2r62_A Cell division protease 95.9 0.003 1E-07 56.2 2.4 23 154-176 45-67 (268)
148 1odf_A YGR205W, hypothetical 3 95.9 0.0095 3.3E-07 53.9 5.7 27 151-177 29-55 (290)
149 1y63_A LMAJ004144AAA protein; 95.9 0.0056 1.9E-07 51.3 3.9 25 152-176 9-33 (184)
150 2if2_A Dephospho-COA kinase; a 95.9 0.0048 1.6E-07 52.4 3.6 22 154-175 2-23 (204)
151 3cmu_A Protein RECA, recombina 95.9 0.017 5.7E-07 64.8 8.5 84 152-243 1426-1514(2050)
152 1g5t_A COB(I)alamin adenosyltr 95.9 0.0084 2.9E-07 50.6 4.8 88 153-243 28-129 (196)
153 2bdt_A BH3686; alpha-beta prot 95.8 0.0051 1.7E-07 51.6 3.5 23 154-176 3-25 (189)
154 2c95_A Adenylate kinase 1; tra 95.8 0.0051 1.7E-07 51.7 3.5 24 153-176 9-32 (196)
155 1via_A Shikimate kinase; struc 95.8 0.0039 1.3E-07 51.6 2.7 23 154-176 5-27 (175)
156 3tau_A Guanylate kinase, GMP k 95.8 0.0056 1.9E-07 52.4 3.7 25 152-176 7-31 (208)
157 1ukz_A Uridylate kinase; trans 95.8 0.0055 1.9E-07 52.0 3.7 25 152-176 14-38 (203)
158 3asz_A Uridine kinase; cytidin 95.8 0.0057 2E-07 52.2 3.8 25 152-176 5-29 (211)
159 2jaq_A Deoxyguanosine kinase; 95.8 0.005 1.7E-07 52.1 3.3 22 155-176 2-23 (205)
160 1ye8_A Protein THEP1, hypothet 95.8 0.0053 1.8E-07 51.3 3.3 22 155-176 2-23 (178)
161 2iyv_A Shikimate kinase, SK; t 95.8 0.0043 1.5E-07 51.8 2.8 23 154-176 3-25 (184)
162 2ze6_A Isopentenyl transferase 95.8 0.0048 1.6E-07 54.7 3.2 23 154-176 2-24 (253)
163 3a00_A Guanylate kinase, GMP k 95.8 0.0045 1.5E-07 52.0 2.9 23 154-176 2-24 (186)
164 1tev_A UMP-CMP kinase; ploop, 95.8 0.0051 1.8E-07 51.6 3.3 24 153-176 3-26 (196)
165 1q57_A DNA primase/helicase; d 95.8 0.047 1.6E-06 53.3 10.6 51 153-207 242-292 (503)
166 2j41_A Guanylate kinase; GMP, 95.7 0.0055 1.9E-07 52.0 3.4 24 153-176 6-29 (207)
167 2bwj_A Adenylate kinase 5; pho 95.7 0.0056 1.9E-07 51.6 3.3 24 153-176 12-35 (199)
168 2qor_A Guanylate kinase; phosp 95.7 0.0052 1.8E-07 52.3 3.1 24 153-176 12-35 (204)
169 1ls1_A Signal recognition part 95.7 0.036 1.2E-06 50.2 8.8 88 152-243 97-189 (295)
170 2r44_A Uncharacterized protein 95.7 0.0056 1.9E-07 56.3 3.5 42 133-176 28-69 (331)
171 1jjv_A Dephospho-COA kinase; P 95.7 0.0061 2.1E-07 51.9 3.5 22 154-175 3-24 (206)
172 4gp7_A Metallophosphoesterase; 95.7 0.0053 1.8E-07 50.8 2.9 22 153-174 9-30 (171)
173 1cke_A CK, MSSA, protein (cyti 95.7 0.0058 2E-07 52.8 3.3 23 154-176 6-28 (227)
174 2qt1_A Nicotinamide riboside k 95.7 0.0074 2.5E-07 51.4 4.0 24 153-176 21-44 (207)
175 3cm0_A Adenylate kinase; ATP-b 95.7 0.0064 2.2E-07 50.7 3.4 23 154-176 5-27 (186)
176 1qf9_A UMP/CMP kinase, protein 95.7 0.0065 2.2E-07 50.8 3.5 24 153-176 6-29 (194)
177 1gvn_B Zeta; postsegregational 95.7 0.01 3.5E-07 53.6 5.0 25 152-176 32-56 (287)
178 1e6c_A Shikimate kinase; phosp 95.7 0.0054 1.9E-07 50.4 2.9 23 154-176 3-25 (173)
179 3hws_A ATP-dependent CLP prote 95.6 0.011 3.9E-07 55.1 5.4 43 134-176 17-74 (363)
180 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0069 2.4E-07 53.8 3.6 24 153-176 4-27 (260)
181 1ex7_A Guanylate kinase; subst 95.6 0.0047 1.6E-07 52.0 2.4 23 154-176 2-24 (186)
182 2cdn_A Adenylate kinase; phosp 95.6 0.0078 2.7E-07 51.0 3.7 24 153-176 20-43 (201)
183 2j37_W Signal recognition part 95.6 0.11 3.7E-06 50.6 12.2 26 152-177 100-125 (504)
184 2bbw_A Adenylate kinase 4, AK4 95.6 0.007 2.4E-07 53.2 3.5 25 152-176 26-50 (246)
185 2plr_A DTMP kinase, probable t 95.6 0.0067 2.3E-07 51.6 3.2 24 154-177 5-28 (213)
186 1lvg_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 51.8 2.9 23 154-176 5-27 (198)
187 1aky_A Adenylate kinase; ATP:A 95.6 0.0069 2.4E-07 52.2 3.3 24 153-176 4-27 (220)
188 2vli_A Antibiotic resistance p 95.6 0.0045 1.5E-07 51.5 2.0 24 153-176 5-28 (183)
189 2pt5_A Shikimate kinase, SK; a 95.5 0.0078 2.7E-07 49.3 3.3 22 155-176 2-23 (168)
190 2pbr_A DTMP kinase, thymidylat 95.5 0.0078 2.7E-07 50.4 3.4 22 155-176 2-23 (195)
191 1xjc_A MOBB protein homolog; s 95.5 0.0084 2.9E-07 49.5 3.4 26 152-177 3-28 (169)
192 2wwf_A Thymidilate kinase, put 95.5 0.0086 2.9E-07 51.0 3.5 25 153-177 10-34 (212)
193 2z0h_A DTMP kinase, thymidylat 95.5 0.018 6.3E-07 48.2 5.5 23 155-177 2-24 (197)
194 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0097 3.3E-07 58.1 4.2 41 134-176 24-64 (500)
195 1zd8_A GTP:AMP phosphotransfer 95.4 0.0081 2.8E-07 52.0 3.3 24 153-176 7-30 (227)
196 3tlx_A Adenylate kinase 2; str 95.4 0.014 4.8E-07 51.2 4.9 25 152-176 28-52 (243)
197 1znw_A Guanylate kinase, GMP k 95.4 0.0084 2.9E-07 51.2 3.3 24 153-176 20-43 (207)
198 3umf_A Adenylate kinase; rossm 95.4 0.0089 3E-07 51.6 3.4 25 152-176 28-52 (217)
199 1nn5_A Similar to deoxythymidy 95.4 0.0092 3.2E-07 50.9 3.5 25 153-177 9-33 (215)
200 1uj2_A Uridine-cytidine kinase 95.4 0.0096 3.3E-07 52.5 3.6 26 151-176 20-45 (252)
201 3geh_A MNME, tRNA modification 95.4 0.069 2.4E-06 51.5 9.9 86 64-176 162-247 (462)
202 2zts_A Putative uncharacterize 95.4 0.033 1.1E-06 48.5 7.1 49 153-205 30-78 (251)
203 2grj_A Dephospho-COA kinase; T 95.4 0.0099 3.4E-07 50.3 3.5 25 152-176 11-35 (192)
204 2p5t_B PEZT; postsegregational 95.3 0.013 4.5E-07 51.7 4.4 25 152-176 31-55 (253)
205 1zak_A Adenylate kinase; ATP:A 95.3 0.0088 3E-07 51.6 3.2 24 153-176 5-28 (222)
206 3ney_A 55 kDa erythrocyte memb 95.3 0.0097 3.3E-07 50.5 3.3 25 152-176 18-42 (197)
207 2jeo_A Uridine-cytidine kinase 95.3 0.011 3.7E-07 52.0 3.8 25 152-176 24-48 (245)
208 1um8_A ATP-dependent CLP prote 95.3 0.017 5.8E-07 54.2 5.4 24 153-176 72-95 (376)
209 3zvl_A Bifunctional polynucleo 95.3 0.058 2E-06 51.4 9.1 26 151-176 256-281 (416)
210 2v54_A DTMP kinase, thymidylat 95.3 0.0099 3.4E-07 50.3 3.4 24 153-176 4-27 (204)
211 3fb4_A Adenylate kinase; psych 95.3 0.0093 3.2E-07 51.1 3.1 22 155-176 2-23 (216)
212 1z6g_A Guanylate kinase; struc 95.3 0.009 3.1E-07 51.6 2.9 24 153-176 23-46 (218)
213 1htw_A HI0065; nucleotide-bind 95.2 0.012 4E-07 48.1 3.4 26 151-176 31-56 (158)
214 1zu4_A FTSY; GTPase, signal re 95.2 0.078 2.7E-06 48.5 9.3 26 152-177 104-129 (320)
215 1jr3_D DNA polymerase III, del 95.2 0.2 7E-06 46.0 12.3 148 146-309 11-183 (343)
216 1tue_A Replication protein E1; 95.2 0.014 4.6E-07 49.7 3.8 37 140-176 44-81 (212)
217 3dl0_A Adenylate kinase; phosp 95.2 0.01 3.5E-07 50.9 3.1 22 155-176 2-23 (216)
218 4e22_A Cytidylate kinase; P-lo 95.2 0.011 3.7E-07 52.3 3.3 25 152-176 26-50 (252)
219 1rj9_A FTSY, signal recognitio 95.2 0.013 4.3E-07 53.4 3.8 25 152-176 101-125 (304)
220 3aez_A Pantothenate kinase; tr 95.2 0.012 4.3E-07 53.7 3.7 25 152-176 89-113 (312)
221 1gtv_A TMK, thymidylate kinase 95.1 0.0068 2.3E-07 51.8 1.8 24 154-177 1-24 (214)
222 2pez_A Bifunctional 3'-phospho 95.1 0.013 4.3E-07 48.7 3.4 24 153-176 5-28 (179)
223 3end_A Light-independent proto 95.1 0.018 6.3E-07 52.2 4.8 42 150-194 38-79 (307)
224 3l0o_A Transcription terminati 95.1 0.0052 1.8E-07 57.4 1.0 52 143-195 164-216 (427)
225 3p32_A Probable GTPase RV1496/ 95.1 0.026 8.9E-07 52.6 5.8 36 141-176 65-102 (355)
226 2f6r_A COA synthase, bifunctio 95.1 0.015 5.2E-07 52.3 4.0 23 152-174 74-96 (281)
227 1s96_A Guanylate kinase, GMP k 95.1 0.012 4.3E-07 50.8 3.3 24 153-176 16-39 (219)
228 3cmu_A Protein RECA, recombina 95.0 0.049 1.7E-06 61.2 8.5 83 153-243 383-470 (2050)
229 1m7g_A Adenylylsulfate kinase; 95.0 0.018 6.1E-07 49.2 4.1 27 151-177 23-49 (211)
230 1vht_A Dephospho-COA kinase; s 95.0 0.016 5.4E-07 49.8 3.8 23 153-175 4-26 (218)
231 2i3b_A HCR-ntpase, human cance 95.0 0.012 4.2E-07 49.6 2.9 24 154-177 2-25 (189)
232 3bgw_A DNAB-like replicative h 94.9 0.073 2.5E-06 51.1 8.6 49 153-206 197-245 (444)
233 3nwj_A ATSK2; P loop, shikimat 94.9 0.012 4.2E-07 51.9 2.9 24 153-176 48-71 (250)
234 3tqc_A Pantothenate kinase; bi 94.9 0.017 5.8E-07 53.0 3.9 25 152-176 91-115 (321)
235 3be4_A Adenylate kinase; malar 94.9 0.013 4.3E-07 50.5 2.9 23 154-176 6-28 (217)
236 2qe7_A ATP synthase subunit al 94.9 0.05 1.7E-06 52.5 7.2 87 152-243 161-263 (502)
237 2r9v_A ATP synthase subunit al 94.9 0.05 1.7E-06 52.6 7.3 87 152-243 174-276 (515)
238 2f1r_A Molybdopterin-guanine d 94.9 0.01 3.5E-07 49.2 2.2 24 153-176 2-25 (171)
239 3lnc_A Guanylate kinase, GMP k 94.9 0.0096 3.3E-07 51.7 2.1 24 153-176 27-51 (231)
240 3ake_A Cytidylate kinase; CMP 94.9 0.016 5.4E-07 49.1 3.3 23 154-176 3-25 (208)
241 2pcj_A ABC transporter, lipopr 94.8 0.015 5E-07 50.5 3.1 23 154-176 31-53 (224)
242 1cr0_A DNA primase/helicase; R 94.8 0.039 1.3E-06 49.8 6.1 50 153-206 35-84 (296)
243 2onk_A Molybdate/tungstate ABC 94.8 0.017 6E-07 50.6 3.5 23 154-176 25-47 (240)
244 3cmw_A Protein RECA, recombina 94.8 0.045 1.5E-06 60.6 7.4 83 153-243 383-470 (1706)
245 1e4v_A Adenylate kinase; trans 94.8 0.018 6E-07 49.4 3.5 22 155-176 2-23 (214)
246 3io3_A DEHA2D07832P; chaperone 94.8 0.039 1.3E-06 51.2 6.0 30 148-177 13-42 (348)
247 2e87_A Hypothetical protein PH 94.8 1.1 3.7E-05 41.4 16.0 26 151-176 165-190 (357)
248 3b9q_A Chloroplast SRP recepto 94.8 0.019 6.4E-07 52.2 3.8 25 153-177 100-124 (302)
249 4tmk_A Protein (thymidylate ki 94.8 0.054 1.9E-06 46.5 6.5 52 154-207 4-55 (213)
250 3tif_A Uncharacterized ABC tra 94.7 0.015 5.2E-07 50.8 3.0 24 153-176 31-54 (235)
251 1nlf_A Regulatory protein REPA 94.7 0.029 9.8E-07 50.2 4.9 23 154-176 31-53 (279)
252 3lv8_A DTMP kinase, thymidylat 94.7 0.054 1.9E-06 47.2 6.5 52 153-206 27-78 (236)
253 2xb4_A Adenylate kinase; ATP-b 94.7 0.016 5.5E-07 50.1 3.1 22 155-176 2-23 (223)
254 4eaq_A DTMP kinase, thymidylat 94.7 0.036 1.2E-06 48.2 5.3 25 153-177 26-50 (229)
255 1np6_A Molybdopterin-guanine d 94.7 0.019 6.6E-07 47.6 3.4 25 153-177 6-30 (174)
256 3k1j_A LON protease, ATP-depen 94.7 0.038 1.3E-06 55.3 6.2 42 133-176 42-83 (604)
257 1sq5_A Pantothenate kinase; P- 94.7 0.021 7.1E-07 52.1 3.9 25 152-176 79-103 (308)
258 1ak2_A Adenylate kinase isoenz 94.7 0.018 6E-07 50.1 3.3 24 153-176 16-39 (233)
259 3a8t_A Adenylate isopentenyltr 94.7 0.019 6.6E-07 52.8 3.5 25 153-177 40-64 (339)
260 1oix_A RAS-related protein RAB 94.6 0.021 7.2E-07 47.8 3.5 24 153-176 29-52 (191)
261 3iqw_A Tail-anchored protein t 94.6 0.048 1.6E-06 50.3 6.2 30 148-177 11-40 (334)
262 2dyk_A GTP-binding protein; GT 94.6 0.022 7.7E-07 45.7 3.6 23 154-176 2-24 (161)
263 3sr0_A Adenylate kinase; phosp 94.6 0.018 6.2E-07 49.2 3.1 22 155-176 2-23 (206)
264 3b85_A Phosphate starvation-in 94.6 0.014 4.9E-07 50.0 2.4 23 154-176 23-45 (208)
265 3r20_A Cytidylate kinase; stru 94.6 0.018 6.2E-07 50.2 3.1 24 153-176 9-32 (233)
266 3crm_A TRNA delta(2)-isopenten 94.6 0.019 6.5E-07 52.6 3.2 23 154-176 6-28 (323)
267 3d3q_A TRNA delta(2)-isopenten 94.6 0.02 7E-07 52.7 3.5 24 154-177 8-31 (340)
268 3vr4_D V-type sodium ATPase su 94.5 0.069 2.4E-06 51.0 7.1 90 153-243 151-257 (465)
269 3exa_A TRNA delta(2)-isopenten 94.5 0.022 7.4E-07 51.8 3.5 25 153-177 3-27 (322)
270 1b0u_A Histidine permease; ABC 94.5 0.018 6.1E-07 51.2 2.9 24 153-176 32-55 (262)
271 3hjn_A DTMP kinase, thymidylat 94.5 0.086 3E-06 44.5 7.1 50 155-207 2-51 (197)
272 2cbz_A Multidrug resistance-as 94.5 0.019 6.3E-07 50.3 3.0 24 153-176 31-54 (237)
273 4akg_A Glutathione S-transfera 94.5 0.14 4.9E-06 59.3 10.8 52 154-210 1268-1319(2695)
274 3gfo_A Cobalt import ATP-bindi 94.5 0.019 6.3E-07 51.5 2.9 23 154-176 35-57 (275)
275 1zj6_A ADP-ribosylation factor 94.5 0.049 1.7E-06 45.1 5.5 35 141-176 5-39 (187)
276 1cp2_A CP2, nitrogenase iron p 94.5 0.041 1.4E-06 48.7 5.2 38 154-194 2-39 (269)
277 2wji_A Ferrous iron transport 94.4 0.025 8.5E-07 46.0 3.5 23 154-176 4-26 (165)
278 1ji0_A ABC transporter; ATP bi 94.4 0.02 6.7E-07 50.3 3.0 23 154-176 33-55 (240)
279 1g6h_A High-affinity branched- 94.4 0.019 6.6E-07 50.8 3.0 23 154-176 34-56 (257)
280 1a7j_A Phosphoribulokinase; tr 94.4 0.012 4.1E-07 53.2 1.6 25 152-176 4-28 (290)
281 2d2e_A SUFC protein; ABC-ATPas 94.4 0.022 7.5E-07 50.3 3.3 23 154-176 30-52 (250)
282 1ltq_A Polynucleotide kinase; 94.4 0.023 7.7E-07 51.4 3.4 23 154-176 3-25 (301)
283 2og2_A Putative signal recogni 94.4 0.025 8.7E-07 52.6 3.8 25 153-177 157-181 (359)
284 1yrb_A ATP(GTP)binding protein 94.4 0.025 8.6E-07 49.9 3.6 24 153-176 14-37 (262)
285 1sgw_A Putative ABC transporte 94.4 0.018 6.2E-07 49.5 2.5 23 154-176 36-58 (214)
286 4g1u_C Hemin import ATP-bindin 94.4 0.021 7E-07 51.0 3.0 24 153-176 37-60 (266)
287 1g41_A Heat shock protein HSLU 94.4 0.025 8.4E-07 54.2 3.7 24 153-176 50-73 (444)
288 2olj_A Amino acid ABC transpor 94.4 0.021 7.1E-07 50.8 2.9 24 153-176 50-73 (263)
289 2zu0_C Probable ATP-dependent 94.4 0.023 7.9E-07 50.7 3.3 24 153-176 46-69 (267)
290 3mfy_A V-type ATP synthase alp 94.3 0.037 1.3E-06 54.0 4.8 49 152-205 226-275 (588)
291 4gzl_A RAS-related C3 botulinu 94.3 0.029 9.8E-07 47.5 3.7 36 141-176 18-53 (204)
292 3j16_B RLI1P; ribosome recycli 94.3 0.35 1.2E-05 48.3 12.1 24 153-176 103-126 (608)
293 2pze_A Cystic fibrosis transme 94.3 0.022 7.4E-07 49.6 3.0 23 154-176 35-57 (229)
294 1moz_A ARL1, ADP-ribosylation 94.3 0.028 9.5E-07 46.3 3.5 35 142-176 6-41 (183)
295 2zej_A Dardarin, leucine-rich 94.3 0.02 7E-07 47.5 2.6 22 155-176 4-25 (184)
296 1fx0_A ATP synthase alpha chai 94.3 0.063 2.1E-06 51.9 6.3 86 153-243 163-264 (507)
297 1mv5_A LMRA, multidrug resista 94.3 0.023 7.9E-07 49.9 3.1 24 153-176 28-51 (243)
298 2ff7_A Alpha-hemolysin translo 94.3 0.022 7.7E-07 50.1 3.0 23 154-176 36-58 (247)
299 3foz_A TRNA delta(2)-isopenten 94.3 0.029 9.9E-07 50.9 3.7 25 152-176 9-33 (316)
300 1vpl_A ABC transporter, ATP-bi 94.3 0.022 7.6E-07 50.4 2.9 24 153-176 41-64 (256)
301 4edh_A DTMP kinase, thymidylat 94.3 0.081 2.8E-06 45.4 6.4 24 154-177 7-30 (213)
302 3ld9_A DTMP kinase, thymidylat 94.3 0.065 2.2E-06 46.3 5.8 56 151-207 19-74 (223)
303 3gqb_B V-type ATP synthase bet 94.2 0.044 1.5E-06 52.3 5.0 90 153-243 147-260 (464)
304 2f9l_A RAB11B, member RAS onco 94.2 0.027 9.3E-07 47.4 3.4 24 153-176 5-28 (199)
305 1fzq_A ADP-ribosylation factor 94.2 0.037 1.3E-06 45.8 4.1 26 151-176 14-39 (181)
306 2ck3_A ATP synthase subunit al 94.2 0.081 2.8E-06 51.1 6.9 91 152-243 161-271 (510)
307 2ged_A SR-beta, signal recogni 94.2 0.056 1.9E-06 44.9 5.3 25 152-176 47-71 (193)
308 2ce2_X GTPase HRAS; signaling 94.2 0.029 9.8E-07 45.0 3.3 22 155-176 5-26 (166)
309 2eyu_A Twitching motility prot 94.2 0.041 1.4E-06 48.9 4.5 26 151-176 23-48 (261)
310 2qi9_C Vitamin B12 import ATP- 94.2 0.024 8.3E-07 50.0 2.9 23 154-176 27-49 (249)
311 2ixe_A Antigen peptide transpo 94.1 0.025 8.4E-07 50.6 3.0 24 153-176 45-68 (271)
312 2ghi_A Transport protein; mult 94.1 0.025 8.5E-07 50.2 3.0 24 153-176 46-69 (260)
313 2afh_E Nitrogenase iron protei 94.1 0.043 1.5E-06 49.3 4.6 39 153-194 2-40 (289)
314 2yz2_A Putative ABC transporte 94.1 0.025 8.6E-07 50.4 3.0 24 153-176 33-56 (266)
315 2r8r_A Sensor protein; KDPD, P 94.1 0.04 1.4E-06 47.6 4.1 38 154-194 7-44 (228)
316 2nq2_C Hypothetical ABC transp 94.1 0.026 8.8E-07 49.9 2.9 23 154-176 32-54 (253)
317 2ihy_A ABC transporter, ATP-bi 94.1 0.026 8.7E-07 50.7 2.9 24 153-176 47-70 (279)
318 2qmh_A HPR kinase/phosphorylas 94.1 0.031 1E-06 47.3 3.2 23 154-176 35-57 (205)
319 2wjg_A FEOB, ferrous iron tran 94.0 0.033 1.1E-06 46.1 3.4 23 154-176 8-30 (188)
320 3cmw_A Protein RECA, recombina 94.0 0.087 3E-06 58.4 7.4 83 153-243 1431-1518(1706)
321 1q3t_A Cytidylate kinase; nucl 94.0 0.035 1.2E-06 48.3 3.7 25 152-176 15-39 (236)
322 2www_A Methylmalonic aciduria 94.0 0.064 2.2E-06 49.8 5.6 25 152-176 73-97 (349)
323 1z2a_A RAS-related protein RAB 94.0 0.032 1.1E-06 45.0 3.2 24 153-176 5-28 (168)
324 1svi_A GTP-binding protein YSX 94.0 0.041 1.4E-06 45.8 3.9 26 151-176 21-46 (195)
325 2v9p_A Replication protein E1; 93.9 0.031 1.1E-06 50.8 3.3 25 152-176 125-149 (305)
326 2yhs_A FTSY, cell division pro 93.9 0.036 1.2E-06 53.7 3.8 24 153-176 293-316 (503)
327 3sop_A Neuronal-specific septi 93.9 0.034 1.2E-06 49.6 3.5 22 155-176 4-25 (270)
328 3oaa_A ATP synthase subunit al 93.9 0.085 2.9E-06 50.8 6.3 87 152-243 161-263 (513)
329 3kjh_A CO dehydrogenase/acetyl 93.8 0.064 2.2E-06 46.6 5.1 39 156-197 3-41 (254)
330 1u0j_A DNA replication protein 93.8 0.068 2.3E-06 47.4 5.2 38 139-176 88-127 (267)
331 2ocp_A DGK, deoxyguanosine kin 93.8 0.038 1.3E-06 48.2 3.6 25 153-177 2-26 (241)
332 3upu_A ATP-dependent DNA helic 93.8 0.09 3.1E-06 50.7 6.5 39 138-177 31-69 (459)
333 2gj8_A MNME, tRNA modification 93.8 0.038 1.3E-06 45.4 3.4 23 154-176 5-27 (172)
334 3con_A GTPase NRAS; structural 93.8 0.035 1.2E-06 46.0 3.2 23 154-176 22-44 (190)
335 2nzj_A GTP-binding protein REM 93.8 0.044 1.5E-06 44.6 3.7 24 153-176 4-27 (175)
336 2lkc_A Translation initiation 93.8 0.046 1.6E-06 44.6 3.8 25 152-176 7-31 (178)
337 1u8z_A RAS-related protein RAL 93.7 0.038 1.3E-06 44.5 3.2 23 154-176 5-27 (168)
338 1f6b_A SAR1; gtpases, N-termin 93.7 0.053 1.8E-06 45.6 4.2 33 144-176 15-48 (198)
339 1nrj_B SR-beta, signal recogni 93.7 0.045 1.5E-06 46.6 3.8 26 151-176 10-35 (218)
340 1m7b_A RND3/RHOE small GTP-bin 93.7 0.041 1.4E-06 45.5 3.3 24 153-176 7-30 (184)
341 1svm_A Large T antigen; AAA+ f 93.7 0.046 1.6E-06 51.3 4.0 26 151-176 167-192 (377)
342 2pjz_A Hypothetical protein ST 93.6 0.034 1.2E-06 49.4 2.9 23 154-176 31-53 (263)
343 3fvq_A Fe(3+) IONS import ATP- 93.6 0.04 1.4E-06 51.3 3.5 24 153-176 30-53 (359)
344 3q72_A GTP-binding protein RAD 93.6 0.034 1.2E-06 44.8 2.7 22 155-176 4-25 (166)
345 2vp4_A Deoxynucleoside kinase; 93.6 0.034 1.2E-06 48.2 2.9 24 153-176 20-43 (230)
346 1c1y_A RAS-related protein RAP 93.6 0.041 1.4E-06 44.3 3.2 22 155-176 5-26 (167)
347 1z08_A RAS-related protein RAB 93.6 0.04 1.4E-06 44.5 3.2 24 153-176 6-29 (170)
348 2c61_A A-type ATP synthase non 93.6 0.065 2.2E-06 51.4 4.9 90 153-243 152-258 (469)
349 1nij_A Hypothetical protein YJ 93.6 0.039 1.3E-06 50.5 3.3 25 152-176 3-27 (318)
350 3dzd_A Transcriptional regulat 93.6 0.5 1.7E-05 44.0 11.0 42 134-176 131-175 (368)
351 1ek0_A Protein (GTP-binding pr 93.6 0.042 1.4E-06 44.3 3.2 22 155-176 5-26 (170)
352 1kao_A RAP2A; GTP-binding prot 93.6 0.042 1.4E-06 44.1 3.2 23 154-176 4-26 (167)
353 2erx_A GTP-binding protein DI- 93.5 0.042 1.4E-06 44.4 3.2 23 154-176 4-26 (172)
354 1z0j_A RAB-22, RAS-related pro 93.5 0.042 1.5E-06 44.4 3.2 23 154-176 7-29 (170)
355 3pqc_A Probable GTP-binding pr 93.5 0.056 1.9E-06 44.8 4.0 25 152-176 22-46 (195)
356 3vr4_A V-type sodium ATPase ca 93.5 0.054 1.8E-06 53.0 4.2 56 145-205 223-280 (600)
357 2fn4_A P23, RAS-related protei 93.5 0.046 1.6E-06 44.7 3.3 25 152-176 8-32 (181)
358 1g16_A RAS-related protein SEC 93.5 0.047 1.6E-06 44.1 3.3 23 154-176 4-26 (170)
359 2orw_A Thymidine kinase; TMTK, 93.5 0.046 1.6E-06 45.7 3.3 23 154-176 4-26 (184)
360 4dzz_A Plasmid partitioning pr 93.5 0.062 2.1E-06 45.2 4.2 42 154-198 2-44 (206)
361 2bbs_A Cystic fibrosis transme 93.5 0.041 1.4E-06 49.7 3.2 24 153-176 64-87 (290)
362 1tf7_A KAIC; homohexamer, hexa 93.4 0.17 5.8E-06 49.7 7.8 24 153-176 281-304 (525)
363 3ihw_A Centg3; RAS, centaurin, 93.4 0.044 1.5E-06 45.5 3.2 24 153-176 20-43 (184)
364 3eph_A TRNA isopentenyltransfe 93.4 0.044 1.5E-06 51.6 3.4 24 154-177 3-26 (409)
365 1ky3_A GTP-binding protein YPT 93.4 0.045 1.5E-06 44.8 3.2 25 152-176 7-31 (182)
366 4hlc_A DTMP kinase, thymidylat 93.4 0.16 5.4E-06 43.2 6.7 50 154-207 3-52 (205)
367 2cxx_A Probable GTP-binding pr 93.4 0.045 1.5E-06 45.2 3.2 22 155-176 3-24 (190)
368 2j69_A Bacterial dynamin-like 93.4 0.45 1.5E-05 48.4 11.1 24 153-176 69-92 (695)
369 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.047 1.6E-06 44.6 3.2 24 153-176 7-30 (177)
370 3q85_A GTP-binding protein REM 93.3 0.055 1.9E-06 43.7 3.6 23 154-176 3-25 (169)
371 1m2o_B GTP-binding protein SAR 93.3 0.049 1.7E-06 45.4 3.3 24 153-176 23-46 (190)
372 3fkq_A NTRC-like two-domain pr 93.3 0.11 3.9E-06 48.5 6.1 54 137-193 115-181 (373)
373 2hxs_A RAB-26, RAS-related pro 93.3 0.049 1.7E-06 44.4 3.2 23 154-176 7-29 (178)
374 3c5c_A RAS-like protein 12; GD 93.3 0.047 1.6E-06 45.4 3.2 24 153-176 21-44 (187)
375 3kta_A Chromosome segregation 93.3 0.053 1.8E-06 44.9 3.4 23 154-176 27-49 (182)
376 2v3c_C SRP54, signal recogniti 93.3 0.034 1.2E-06 53.2 2.5 25 153-177 99-123 (432)
377 1r8s_A ADP-ribosylation factor 93.3 0.048 1.7E-06 43.8 3.1 22 155-176 2-23 (164)
378 1z47_A CYSA, putative ABC-tran 93.3 0.047 1.6E-06 50.7 3.3 24 153-176 41-64 (355)
379 1r2q_A RAS-related protein RAB 93.2 0.051 1.7E-06 43.8 3.2 23 154-176 7-29 (170)
380 2yv5_A YJEQ protein; hydrolase 93.2 0.083 2.8E-06 47.9 4.9 32 141-176 156-187 (302)
381 2bme_A RAB4A, RAS-related prot 93.2 0.054 1.8E-06 44.6 3.3 24 153-176 10-33 (186)
382 1z0f_A RAB14, member RAS oncog 93.2 0.052 1.8E-06 44.2 3.2 24 153-176 15-38 (179)
383 3tui_C Methionine import ATP-b 93.2 0.049 1.7E-06 50.7 3.3 24 153-176 54-77 (366)
384 2y8e_A RAB-protein 6, GH09086P 93.2 0.056 1.9E-06 44.1 3.3 23 154-176 15-37 (179)
385 2b6h_A ADP-ribosylation factor 93.2 0.043 1.5E-06 45.9 2.7 27 150-176 26-52 (192)
386 3t1o_A Gliding protein MGLA; G 93.2 0.052 1.8E-06 45.1 3.2 24 153-176 14-37 (198)
387 4dsu_A GTPase KRAS, isoform 2B 93.1 0.052 1.8E-06 44.7 3.2 23 154-176 5-27 (189)
388 3kkq_A RAS-related protein M-R 93.1 0.053 1.8E-06 44.6 3.2 24 153-176 18-41 (183)
389 1p5z_B DCK, deoxycytidine kina 93.1 0.034 1.2E-06 49.2 2.1 25 152-176 23-47 (263)
390 1upt_A ARL1, ADP-ribosylation 93.1 0.054 1.8E-06 43.8 3.2 24 153-176 7-30 (171)
391 2iwr_A Centaurin gamma 1; ANK 93.1 0.041 1.4E-06 45.0 2.5 23 154-176 8-30 (178)
392 2yyz_A Sugar ABC transporter, 93.1 0.051 1.7E-06 50.6 3.3 24 153-176 29-52 (359)
393 3nh6_A ATP-binding cassette SU 93.1 0.034 1.2E-06 50.6 2.1 24 153-176 80-103 (306)
394 3rlf_A Maltose/maltodextrin im 93.1 0.051 1.7E-06 50.9 3.3 24 153-176 29-52 (381)
395 3t5g_A GTP-binding protein RHE 93.1 0.058 2E-06 44.3 3.3 24 153-176 6-29 (181)
396 3tw8_B RAS-related protein RAB 93.1 0.044 1.5E-06 44.8 2.6 25 152-176 8-32 (181)
397 2atv_A RERG, RAS-like estrogen 93.1 0.065 2.2E-06 44.8 3.7 25 152-176 27-51 (196)
398 2it1_A 362AA long hypothetical 93.0 0.052 1.8E-06 50.6 3.3 24 153-176 29-52 (362)
399 1ksh_A ARF-like protein 2; sma 93.0 0.06 2.1E-06 44.4 3.4 26 151-176 16-41 (186)
400 3f9v_A Minichromosome maintena 93.0 0.041 1.4E-06 54.9 2.7 44 133-176 296-350 (595)
401 2h92_A Cytidylate kinase; ross 93.0 0.049 1.7E-06 46.5 2.9 23 154-176 4-26 (219)
402 3bc1_A RAS-related protein RAB 93.0 0.057 1.9E-06 44.7 3.2 24 153-176 11-34 (195)
403 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.057 2E-06 44.4 3.2 23 154-176 6-28 (186)
404 1g29_1 MALK, maltose transport 93.0 0.054 1.9E-06 50.7 3.3 23 154-176 30-52 (372)
405 2oil_A CATX-8, RAS-related pro 93.0 0.056 1.9E-06 44.9 3.1 24 153-176 25-48 (193)
406 3llu_A RAS-related GTP-binding 93.0 0.06 2E-06 45.1 3.3 24 153-176 20-43 (196)
407 2a9k_A RAS-related protein RAL 92.9 0.059 2E-06 44.3 3.2 24 153-176 18-41 (187)
408 3bwd_D RAC-like GTP-binding pr 92.9 0.059 2E-06 44.1 3.2 24 153-176 8-31 (182)
409 1v43_A Sugar-binding transport 92.9 0.055 1.9E-06 50.6 3.3 24 153-176 37-60 (372)
410 3v9p_A DTMP kinase, thymidylat 92.9 0.083 2.8E-06 45.8 4.2 25 153-177 25-49 (227)
411 1pui_A ENGB, probable GTP-bind 92.9 0.037 1.3E-06 46.8 1.9 27 150-176 23-49 (210)
412 2cjw_A GTP-binding protein GEM 92.9 0.058 2E-06 45.1 3.1 23 153-175 6-28 (192)
413 1gwn_A RHO-related GTP-binding 92.9 0.063 2.2E-06 45.5 3.3 24 153-176 28-51 (205)
414 2efe_B Small GTP-binding prote 92.9 0.061 2.1E-06 44.0 3.2 23 154-176 13-35 (181)
415 3fdi_A Uncharacterized protein 92.9 0.067 2.3E-06 45.4 3.5 23 154-176 7-29 (201)
416 2fg5_A RAB-22B, RAS-related pr 92.8 0.065 2.2E-06 44.6 3.3 24 153-176 23-46 (192)
417 3cwq_A Para family chromosome 92.8 0.15 5E-06 43.4 5.6 42 155-200 2-44 (209)
418 2qm8_A GTPase/ATPase; G protei 92.8 0.078 2.7E-06 48.9 4.1 26 151-176 53-78 (337)
419 2bov_A RAla, RAS-related prote 92.8 0.061 2.1E-06 45.1 3.2 25 152-176 13-37 (206)
420 3jvv_A Twitching mobility prot 92.8 0.076 2.6E-06 49.4 4.0 24 153-176 123-146 (356)
421 1lw7_A Transcriptional regulat 92.8 0.058 2E-06 50.3 3.2 24 153-176 170-193 (365)
422 3d31_A Sulfate/molybdate ABC t 92.8 0.046 1.6E-06 50.7 2.5 24 153-176 26-49 (348)
423 3oes_A GTPase rhebl1; small GT 92.8 0.066 2.3E-06 45.0 3.3 25 152-176 23-47 (201)
424 2ew1_A RAS-related protein RAB 92.8 0.066 2.3E-06 45.2 3.3 24 153-176 26-49 (201)
425 2g6b_A RAS-related protein RAB 92.8 0.064 2.2E-06 43.8 3.2 24 153-176 10-33 (180)
426 1vg8_A RAS-related protein RAB 92.8 0.062 2.1E-06 45.1 3.2 25 152-176 7-31 (207)
427 3gmt_A Adenylate kinase; ssgci 92.8 0.057 2E-06 46.8 2.9 24 153-176 8-31 (230)
428 1g8f_A Sulfate adenylyltransfe 92.7 0.092 3.2E-06 51.2 4.7 41 137-177 377-419 (511)
429 3cbq_A GTP-binding protein REM 92.7 0.048 1.7E-06 45.8 2.4 24 152-175 22-45 (195)
430 2axn_A 6-phosphofructo-2-kinas 92.7 0.064 2.2E-06 52.6 3.6 25 152-176 34-58 (520)
431 2obl_A ESCN; ATPase, hydrolase 92.7 0.067 2.3E-06 49.6 3.5 25 152-176 70-94 (347)
432 2woj_A ATPase GET3; tail-ancho 92.7 0.19 6.4E-06 46.7 6.6 29 150-178 15-43 (354)
433 3clv_A RAB5 protein, putative; 92.7 0.064 2.2E-06 44.7 3.2 24 153-176 7-30 (208)
434 3dz8_A RAS-related protein RAB 92.7 0.063 2.2E-06 44.6 3.1 24 153-176 23-46 (191)
435 2qu8_A Putative nucleolar GTP- 92.7 0.077 2.6E-06 45.7 3.7 25 152-176 28-52 (228)
436 1zbd_A Rabphilin-3A; G protein 92.7 0.067 2.3E-06 44.9 3.2 24 153-176 8-31 (203)
437 2fh5_B SR-beta, signal recogni 92.6 0.067 2.3E-06 45.3 3.2 24 153-176 7-30 (214)
438 1zd9_A ADP-ribosylation factor 92.6 0.069 2.4E-06 44.3 3.2 24 153-176 22-45 (188)
439 2ewv_A Twitching motility prot 92.6 0.098 3.4E-06 48.9 4.5 26 151-176 134-159 (372)
440 1p9r_A General secretion pathw 92.6 0.18 6E-06 48.0 6.3 27 150-176 164-190 (418)
441 3reg_A RHO-like small GTPase; 92.6 0.07 2.4E-06 44.5 3.2 24 153-176 23-46 (194)
442 2woo_A ATPase GET3; tail-ancho 92.6 0.17 5.7E-06 46.5 6.0 28 150-177 16-43 (329)
443 2gf9_A RAS-related protein RAB 92.6 0.07 2.4E-06 44.2 3.2 24 153-176 22-45 (189)
444 2p67_A LAO/AO transport system 92.6 0.09 3.1E-06 48.5 4.2 27 150-176 53-79 (341)
445 3gd7_A Fusion complex of cysti 92.6 0.07 2.4E-06 50.2 3.5 24 153-176 47-70 (390)
446 3ea0_A ATPase, para family; al 92.5 0.17 6E-06 43.7 5.8 40 152-193 3-43 (245)
447 1oxx_K GLCV, glucose, ABC tran 92.5 0.043 1.5E-06 51.0 1.9 24 153-176 31-54 (353)
448 3tkl_A RAS-related protein RAB 92.5 0.072 2.5E-06 44.3 3.2 24 153-176 16-39 (196)
449 2o52_A RAS-related protein RAB 92.5 0.072 2.5E-06 44.8 3.2 25 152-176 24-48 (200)
450 4bas_A ADP-ribosylation factor 92.5 0.071 2.4E-06 44.4 3.1 25 152-176 16-40 (199)
451 2a5j_A RAS-related protein RAB 92.5 0.072 2.5E-06 44.3 3.1 24 153-176 21-44 (191)
452 1tq4_A IIGP1, interferon-induc 92.5 0.094 3.2E-06 49.7 4.2 25 152-176 68-92 (413)
453 2gf0_A GTP-binding protein DI- 92.4 0.076 2.6E-06 44.2 3.2 24 153-176 8-31 (199)
454 2q3h_A RAS homolog gene family 92.4 0.07 2.4E-06 44.7 3.0 24 153-176 20-43 (201)
455 2qnr_A Septin-2, protein NEDD5 92.4 0.062 2.1E-06 48.7 2.8 21 155-175 20-40 (301)
456 1ega_A Protein (GTP-binding pr 92.4 0.08 2.7E-06 48.0 3.5 25 152-176 7-31 (301)
457 2bcg_Y Protein YP2, GTP-bindin 92.4 0.08 2.7E-06 44.6 3.3 24 153-176 8-31 (206)
458 2p5s_A RAS and EF-hand domain 92.4 0.074 2.5E-06 44.6 3.1 25 152-176 27-51 (199)
459 2h17_A ADP-ribosylation factor 92.4 0.071 2.4E-06 43.9 2.9 24 153-176 21-44 (181)
460 1x3s_A RAS-related protein RAB 92.4 0.076 2.6E-06 44.0 3.2 23 154-176 16-38 (195)
461 4dkx_A RAS-related protein RAB 92.4 0.076 2.6E-06 45.6 3.2 22 155-176 15-36 (216)
462 3lxx_A GTPase IMAP family memb 92.4 0.088 3E-06 45.7 3.6 25 152-176 28-52 (239)
463 1z06_A RAS-related protein RAB 92.3 0.077 2.6E-06 44.0 3.2 25 152-176 19-43 (189)
464 3ch4_B Pmkase, phosphomevalona 92.3 0.11 3.8E-06 43.9 4.1 25 152-176 10-34 (202)
465 3cr8_A Sulfate adenylyltranfer 92.3 0.1 3.5E-06 51.4 4.4 26 152-177 368-393 (552)
466 1ny5_A Transcriptional regulat 92.3 0.82 2.8E-05 42.8 10.5 41 135-176 140-183 (387)
467 2atx_A Small GTP binding prote 92.3 0.085 2.9E-06 43.9 3.3 23 154-176 19-41 (194)
468 2j1l_A RHO-related GTP-binding 92.3 0.079 2.7E-06 45.1 3.2 24 153-176 34-57 (214)
469 3k53_A Ferrous iron transport 92.2 0.097 3.3E-06 46.5 3.8 24 153-176 3-26 (271)
470 3k9g_A PF-32 protein; ssgcid, 92.2 0.15 5E-06 45.1 5.0 46 150-199 24-70 (267)
471 2gza_A Type IV secretion syste 92.2 0.073 2.5E-06 49.6 3.1 23 154-176 176-198 (361)
472 2fv8_A H6, RHO-related GTP-bin 92.2 0.085 2.9E-06 44.5 3.3 24 153-176 25-48 (207)
473 1u0l_A Probable GTPase ENGC; p 92.2 0.13 4.5E-06 46.6 4.7 33 141-176 160-192 (301)
474 4f4c_A Multidrug resistance pr 92.2 0.79 2.7E-05 50.2 11.5 24 153-176 444-467 (1321)
475 2hup_A RAS-related protein RAB 92.2 0.088 3E-06 44.3 3.3 25 152-176 28-52 (201)
476 2j0v_A RAC-like GTP-binding pr 92.1 0.089 3E-06 44.5 3.3 24 153-176 9-32 (212)
477 2g3y_A GTP-binding protein GEM 92.1 0.082 2.8E-06 45.2 3.0 23 153-175 37-59 (211)
478 2gco_A H9, RHO-related GTP-bin 92.1 0.092 3.2E-06 44.1 3.3 24 153-176 25-48 (201)
479 2aka_B Dynamin-1; fusion prote 92.1 0.19 6.4E-06 45.0 5.6 25 152-176 25-49 (299)
480 1bif_A 6-phosphofructo-2-kinas 92.1 0.084 2.9E-06 51.1 3.4 25 152-176 38-62 (469)
481 2il1_A RAB12; G-protein, GDP, 92.0 0.071 2.4E-06 44.4 2.5 24 153-176 26-49 (192)
482 2npi_A Protein CLP1; CLP1-PCF1 92.0 0.079 2.7E-06 51.1 3.1 25 152-176 137-161 (460)
483 3zq6_A Putative arsenical pump 92.0 0.18 6.2E-06 46.1 5.4 25 153-177 14-38 (324)
484 1mky_A Probable GTP-binding pr 92.0 0.2 6.8E-06 48.0 5.9 43 134-176 150-203 (439)
485 3cph_A RAS-related protein SEC 91.9 0.091 3.1E-06 44.3 3.2 24 153-176 20-43 (213)
486 3tqf_A HPR(Ser) kinase; transf 91.9 0.11 3.6E-06 42.9 3.3 23 154-176 17-39 (181)
487 2h57_A ADP-ribosylation factor 91.9 0.068 2.3E-06 44.4 2.3 24 153-176 21-44 (190)
488 2rcn_A Probable GTPase ENGC; Y 91.9 0.091 3.1E-06 48.8 3.3 23 154-176 216-238 (358)
489 3tmk_A Thymidylate kinase; pho 91.9 0.25 8.6E-06 42.3 5.8 25 153-177 5-29 (216)
490 4b3f_X DNA-binding protein smu 91.8 0.67 2.3E-05 46.6 9.9 62 140-207 194-255 (646)
491 4dhe_A Probable GTP-binding pr 91.8 0.071 2.4E-06 45.5 2.4 26 151-176 27-52 (223)
492 3q3j_B RHO-related GTP-binding 91.8 0.097 3.3E-06 44.6 3.2 24 153-176 27-50 (214)
493 2pt7_A CAG-ALFA; ATPase, prote 91.7 0.078 2.7E-06 48.8 2.6 23 154-176 172-194 (330)
494 3iev_A GTP-binding protein ERA 91.7 0.11 3.8E-06 47.2 3.6 25 152-176 9-33 (308)
495 2fu5_C RAS-related protein RAB 91.7 0.056 1.9E-06 44.4 1.5 24 153-176 8-31 (183)
496 2xtp_A GTPase IMAP family memb 91.6 0.13 4.4E-06 45.2 3.9 25 152-176 21-45 (260)
497 3gee_A MNME, tRNA modification 91.6 0.18 6.1E-06 48.8 5.1 22 155-176 235-256 (476)
498 3hdt_A Putative kinase; struct 91.6 0.13 4.4E-06 44.4 3.7 25 152-176 13-37 (223)
499 2dpy_A FLII, flagellum-specifi 91.6 0.11 3.7E-06 49.8 3.5 26 151-176 155-180 (438)
500 2f7s_A C25KG, RAS-related prot 91.6 0.1 3.4E-06 44.3 3.0 24 153-176 25-48 (217)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.1e-40 Score=328.97 Aligned_cols=231 Identities=17% Similarity=0.191 Sum_probs=188.9
Q ss_pred CchHHHHHHHHHHhcCC---CceEEEEEeCCCCcHHHHHHHHHh--chhcccCCCCceEEEEeCCCC--CHHHHHHHHHH
Q 045887 135 RNTKKIVKKVWEDLMGD---KVTKIGVWGMGGIGKTAIMRHINN--RPQEETNEFSDVIWVTVSQPL--DLVKLQAEIAT 207 (382)
Q Consensus 135 ~gr~~~~~~l~~~l~~~---~~~vv~I~G~gGvGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~ 207 (382)
+||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ + .++..+|++++||++++.. +...++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSD-QLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCS-STBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhh-HHHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999999643 679999999999999999999998 4 4578999999999999875 78999999999
Q ss_pred HhCCCCC-------CCchHHHHHHHHHHHHhCCC-eEEEEEEcC----------CCC-eEEEecc------ccC-c-eee
Q 045887 208 ALKLSPT-------KDEDKVRRARRLLGKLKVKK-KFVLILDYI----------DNH-MFCWGLR------SMG-C-EEV 260 (382)
Q Consensus 208 ~l~~~~~-------~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv----------~~g-~iivTtR------~~~-~-~~~ 260 (382)
+++.... ...+.......+.+.|.+ + ||||||||| .+| +|||||| .++ . ..|
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~ 288 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFI 288 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEE
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEE
Confidence 9976421 123456678889999988 6 999999999 268 9999999 222 2 568
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChhHHHHHHHHHhhccccCCCC
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRSFSGI 340 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~ 340 (382)
+|++|+.++||+||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ + |..+ +.+....+.. .
T Consensus 289 ~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~--~ 359 (549)
T 2a5y_B 289 EVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESR--G 359 (549)
T ss_dssp ECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHH--C
T ss_pred ECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhcc--c
Confidence 9999999999999999987653 246788899999999999999999999999873 3 4333 3333222221 1
Q ss_pred hHhHHHHHHHhHhhCCCCCchhHhh-----------hcccCCCCcccc
Q 045887 341 NADVLGRLEFSYRRLKNKKVQHCFL-----------YCALYPEDFAIS 377 (382)
Q Consensus 341 ~~~~~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~~~i~ 377 (382)
...+..++.+||+.| |+++|.||+ |||+||+++.|+
T Consensus 360 ~~~i~~~l~~Sy~~L-~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~ 406 (549)
T 2a5y_B 360 LVGVECITPYSYKSL-AMALQRCVEVLSDEDRSALAFAVVMPPGVDIP 406 (549)
T ss_dssp SSTTCCCSSSSSSSH-HHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE
T ss_pred HHHHHHHHhcccccc-cHHHHHHHhccchhhhhHhhheeeeCCCCeee
Confidence 345778899999999 999999999 999999999987
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.5e-34 Score=309.07 Aligned_cols=247 Identities=19% Similarity=0.246 Sum_probs=196.0
Q ss_pred ccccccccCchHHHHHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCC-CceEEEEeCCCCC--HHHH
Q 045887 127 IVNNNTSRRNTKKIVKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEF-SDVIWVTVSQPLD--LVKL 201 (382)
Q Consensus 127 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~--~~~~ 201 (382)
.|+.+..|+||+.++++|.+.|. +++.++|+|+||||+||||||+++|++......+| +.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 44555669999999999999985 45689999999999999999999999832335555 5677999988543 4455
Q ss_pred HHHHHHHhCCCCC----CCchHHHHHHHHHHHHhCCC--eEEEEEEcC---------CCC-eEEEeccc-------cCc-
Q 045887 202 QAEIATALKLSPT----KDEDKVRRARRLLGKLKVKK--KFVLILDYI---------DNH-MFCWGLRS-------MGC- 257 (382)
Q Consensus 202 ~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~k--r~LlVlDdv---------~~g-~iivTtR~-------~~~- 257 (382)
+..++..+..... ...+.......+...+.+ + ||||||||| .+| +||||||. .+.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS-SSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhc-cCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCc
Confidence 6777777765321 234667788888888877 5 999999999 678 99999991 222
Q ss_pred eeeecCC-CChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChhHHHHHHHHHhhcccc
Q 045887 258 EEVIVPP-LSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRS 336 (382)
Q Consensus 258 ~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~~w~~~l~~l~~~~~~ 336 (382)
..+++++ |+.++|++||...++.. .+.+.+.+.+|+++|+|+||||+++|++|+.+. ..|...++.+....+.
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCC
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhh
Confidence 5678986 99999999999988543 234456789999999999999999999998743 5799999988754422
Q ss_pred C-----CCChHhHHHHHHHhHhhCCCCCchhHhhhcccCCCCcccccCcC
Q 045887 337 F-----SGINADVLGRLEFSYRRLKNKKVQHCFLYCALYPEDFAISKDEL 381 (382)
Q Consensus 337 ~-----~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~L 381 (382)
. ......+..+|.+||+.| |++.|.||+|||+||+++.|+++.|
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L-~~~~~~~~~~l~~f~~~~~i~~~~~ 400 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTKVL 400 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTS-CTTTHHHHHHGGGSCTTCCEEHHHH
T ss_pred hcccccccchHHHHHHHHHHHHhC-CHHHHHHHHHhCccCCCCeeCHHHH
Confidence 1 122367999999999999 8899999999999999999987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.9e-34 Score=291.15 Aligned_cols=221 Identities=13% Similarity=0.117 Sum_probs=173.8
Q ss_pred cCchHHHHHHHHHHhcC-CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCc-eEEEEeCCCCCHHHHHHHHHHHhCC
Q 045887 134 RRNTKKIVKKVWEDLMG-DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSD-VIWVTVSQPLDLVKLQAEIATALKL 211 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~ 211 (382)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+.+|++ .++..+|+. ++|+++++.++...++..|++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d-~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH-CHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh-hHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 59999999999999875 56799999999999999999999987 556788986 8999999998888888887775422
Q ss_pred ---CCC---C-----CchHHHHHHHHHHHH---hCCCeEEEEEEcC---------CCC-eEEEeccc------cCc-eee
Q 045887 212 ---SPT---K-----DEDKVRRARRLLGKL---KVKKKFVLILDYI---------DNH-MFCWGLRS------MGC-EEV 260 (382)
Q Consensus 212 ---~~~---~-----~~~~~~~~~~l~~~l---~~~kr~LlVlDdv---------~~g-~iivTtR~------~~~-~~~ 260 (382)
... . ..+.......+.+.| .+ +|+||||||| .+| +||||||. +.. ..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~-KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy 287 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTT-SSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSC
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEE
Confidence 100 0 113344556666655 45 9999999999 568 99999991 122 356
Q ss_pred ecC------CCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCC-CChhHHHHHHHHHhhc
Q 045887 261 IVP------PLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGV-DEIHEWRNALNELRGL 333 (382)
Q Consensus 261 ~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~-~~~~~w~~~l~~l~~~ 333 (382)
+++ +|+.+|||+||.+... .. ..++..+| |+|+||||+++|+.|+.+ .+.++|...
T Consensus 288 ~LeL~d~dL~LS~eEA~eLF~~~~g-~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------- 350 (1221)
T 1vt4_I 288 HISLDHHSMTLTPDEVKSLLLKYLD-CR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------- 350 (1221)
T ss_dssp EEEECSSSSCCCHHHHHHHHHHHHC-CC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------
T ss_pred EecCccccCCcCHHHHHHHHHHHcC-CC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------
Confidence 666 9999999999999842 21 12333333 999999999999999985 367788642
Q ss_pred cccCCCChHhHHHHHHHhHhhCCCCCc-hhHhhhcccCCCCcccccCc
Q 045887 334 VRSFSGINADVLGRLEFSYRRLKNKKV-QHCFLYCALYPEDFAISKDE 380 (382)
Q Consensus 334 ~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cf~~~s~fp~~~~i~~~~ 380 (382)
....+..+|.+||+.| |++. |.||++||+||+++.|+++.
T Consensus 351 ------~~~~I~aaLelSYd~L-p~eelK~cFL~LAIFPed~~I~~el 391 (1221)
T 1vt4_I 351 ------NCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTIL 391 (1221)
T ss_dssp ------SCHHHHHHHHHHHHHS-CTTHHHHHHHHTTSSCTTSCEEHHH
T ss_pred ------ChhHHHHHHHHHHHhC-CHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 1478999999999999 8888 99999999999999998654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=9.5e-32 Score=272.23 Aligned_cols=245 Identities=19% Similarity=0.241 Sum_probs=187.1
Q ss_pred ccccccccCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhchhcc-cCCC-CceEEEEeCCCCCHHHHH
Q 045887 127 IVNNNTSRRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNRPQEE-TNEF-SDVIWVTVSQPLDLVKLQ 202 (382)
Q Consensus 127 ~~~~~~~~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 202 (382)
.|+.+..|+||+.++++|.+++.. ++.++|+|+||||+||||||..++++ ... ..+| +.++|++++.. +...++
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD-HSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC-HHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc-hhHHHhhCCCceEEEECCCC-chHHHH
Confidence 345566799999999999999973 46789999999999999999999998 444 6778 57999999875 333333
Q ss_pred H---HHHHHhCCC----CCCCchHHHHHHHHHHHHhCC-CeEEEEEEcC---------CCC-eEEEeccc------cCce
Q 045887 203 A---EIATALKLS----PTKDEDKVRRARRLLGKLKVK-KKFVLILDYI---------DNH-MFCWGLRS------MGCE 258 (382)
Q Consensus 203 ~---~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdv---------~~g-~iivTtR~------~~~~ 258 (382)
. .++..++.. .....+.......+...+.+. +++||||||+ .+| +||||||. ....
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~ 276 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGP 276 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSC
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCC
Confidence 3 344455531 122345666777777777652 6899999999 567 99999991 1223
Q ss_pred eeec---CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhhcCCCChhHHHHHHHHHhhccc
Q 045887 259 EVIV---PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVR 335 (382)
Q Consensus 259 ~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L~~~~~~~~w~~~l~~l~~~~~ 335 (382)
.+++ ++|+.+||++||...++... ....+.+.+|+++|+|+||||..+|+.|+.. ...|...++.+.....
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQF 350 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCC
T ss_pred ceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHH
Confidence 4444 58999999999999986532 2234678999999999999999999999874 3479988888875431
Q ss_pred c-----CCCChHhHHHHHHHhHhhCCCCCchhHhhhcccCCCCcccccCc
Q 045887 336 S-----FSGINADVLGRLEFSYRRLKNKKVQHCFLYCALYPEDFAISKDE 380 (382)
Q Consensus 336 ~-----~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~ 380 (382)
. .......+..++..||+.| |++.|.||++||+||+++.|+.+.
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L-~~~~~~~l~~la~f~~~~~i~~~~ 399 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTKV 399 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTS-CTTTHHHHHHGGGCCTTCCEEHHH
T ss_pred HHhhhccccchHHHHHHHHHHHHhC-CHHHHHHHHHccccCCCCccCHHH
Confidence 1 1123468999999999999 889999999999999999887653
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=2e-13 Score=128.18 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=122.0
Q ss_pred ccccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC------CHHHHH
Q 045887 129 NNNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL------DLVKLQ 202 (382)
Q Consensus 129 ~~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~ 202 (382)
..+..++||+.+++.|.+++.++ +++.|+|++|+|||||++.+++. . ..+|+++.... +...++
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE---R-----PGILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH---S-----SEEEEEHHHHHHTTTCBCHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH---c-----CcEEEEeecccccccCCCHHHHH
Confidence 34456999999999999988754 79999999999999999999887 2 16788765432 456667
Q ss_pred HHHHHHhCC-----------------CCC-CCchHHHHHHHHHHHHhCCCeEEEEEEcC----C----------------
Q 045887 203 AEIATALKL-----------------SPT-KDEDKVRRARRLLGKLKVKKKFVLILDYI----D---------------- 244 (382)
Q Consensus 203 ~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----~---------------- 244 (382)
..+.+.+.. ..+ ...+..+....+.+.....++++||+||+ .
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 777665542 000 01234445555555554324899999998 1
Q ss_pred ----CC-eEEEeccc----c-------------C--ceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHc
Q 045887 245 ----NH-MFCWGLRS----M-------------G--CEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEEC 300 (382)
Q Consensus 245 ----~g-~iivTtR~----~-------------~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c 300 (382)
++ .+++|++. . + ...+++.+|+.+|+.+++...+...+.. -..+.+..|+..|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELL 235 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHH
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHh
Confidence 35 78888761 0 1 1367999999999999998754322211 1245778999999
Q ss_pred CCchhHHHHHHhhhc
Q 045887 301 AGLQLAIFTVVGCMR 315 (382)
Q Consensus 301 ~glPLal~~~~~~L~ 315 (382)
+|+|+++..++..+.
T Consensus 236 gG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 236 DGIPGWLVVFGVEYL 250 (350)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999887643
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=2.9e-13 Score=127.36 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=115.5
Q ss_pred cccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-----CCHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-----LDLVKLQAE 204 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 204 (382)
.+..++||+++++.|.+ +.. +++.|+|++|+|||+|++.+++. ... ..+|+++... .+....+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINE---LNL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHH---HTC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHh---cCC---CEEEEEchhhccccCCCHHHHHHH
Confidence 44569999999999999 765 69999999999999999999987 222 2578887642 234444444
Q ss_pred HHHHhC--------------C----CCC-----------CCchHHHHHHHHHHHHhCCCeEEEEEEcC------------
Q 045887 205 IATALK--------------L----SPT-----------KDEDKVRRARRLLGKLKVKKKFVLILDYI------------ 243 (382)
Q Consensus 205 i~~~l~--------------~----~~~-----------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------ 243 (382)
+.+.+. . ..+ ...........+.+ ... ++++||+||+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ-ASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH-TCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHh-cCC-CCeEEEEECHHHhhccCchhHH
Confidence 444331 0 000 01122333333322 122 4899999998
Q ss_pred ---------CCC-eEEEeccc----------c------C---ceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHH
Q 045887 244 ---------DNH-MFCWGLRS----------M------G---CEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIIN 294 (382)
Q Consensus 244 ---------~~g-~iivTtR~----------~------~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~ 294 (382)
.++ .+++|++. . . ...+++.+|+.+++.+++...+...+. .... . .
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~---~-~ 233 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD---Y-E 233 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC---H-H
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc---H-H
Confidence 236 88898871 0 0 146799999999999999875421111 1111 1 7
Q ss_pred HHHHHcCCchhHHHHHHhhhcCCCChhHH
Q 045887 295 SVVEECAGLQLAIFTVVGCMRGVDEIHEW 323 (382)
Q Consensus 295 ~i~~~c~glPLal~~~~~~L~~~~~~~~w 323 (382)
.|+..|+|+|+++..++..+....+...|
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~ 262 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFA 262 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHH
Confidence 89999999999999998876432333333
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=1.8e-13 Score=131.75 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=123.8
Q ss_pred ccccCchHHHHHHHHHHh-c----C--CCceEEEE--EeCCCCcHHHHHHHHHhchhcc--cCCCC-ceEEEEeCCCCCH
Q 045887 131 NTSRRNTKKIVKKVWEDL-M----G--DKVTKIGV--WGMGGIGKTAIMRHINNRPQEE--TNEFS-DVIWVTVSQPLDL 198 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l-~----~--~~~~vv~I--~G~gGvGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~~~~~~~ 198 (382)
+..++||+.+++.|.+++ . . .....+.| +|++|+|||||++.+++..... ...+. ..+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 356899999999998887 3 2 24456666 9999999999999999873211 01222 3578887677788
Q ss_pred HHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHhC-CCeEEEEEEcC------------------------C-----CC-
Q 045887 199 VKLQAEIATALKLSPTK-DEDKVRRARRLLGKLKV-KKKFVLILDYI------------------------D-----NH- 246 (382)
Q Consensus 199 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~kr~LlVlDdv------------------------~-----~g- 246 (382)
..++..++..++...+. ..+.......+.+.+.. +++++|||||+ . ..
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999999765432 23345556666666642 37999999988 1 23
Q ss_pred eEEEecccc----------------CceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcC------Cch
Q 045887 247 MFCWGLRSM----------------GCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECA------GLQ 304 (382)
Q Consensus 247 ~iivTtR~~----------------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~------glP 304 (382)
.+|+||+.. -...+.+++|+.++++++|...+..... ...-..+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcH
Confidence 577787611 0123899999999999999765421110 11122467788999999 999
Q ss_pred hHHHHHH
Q 045887 305 LAIFTVV 311 (382)
Q Consensus 305 Lal~~~~ 311 (382)
..+..+.
T Consensus 260 ~~~~~l~ 266 (412)
T 1w5s_A 260 RRAIVAL 266 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655544
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.47 E-value=5.4e-14 Score=110.07 Aligned_cols=75 Identities=9% Similarity=0.182 Sum_probs=66.3
Q ss_pred HHhhhhhhhhhhcccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 045887 10 IFKCVCPPVCKYVQDHRKLDENMKNLERVLQEFNSQKEDIEATLKAEGDRGKKPRTEVKNWLQNLQRINSKAQSIEQEVK 89 (382)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~~~ae~~~~~~~~~~v~~Wl~~l~~~~y~~ed~~d~~~ 89 (382)
++.++.+.+.+++..+.++++++++|+++|+.|+++|.| |+.+.....++.++.|+++||+++||+||++|+|.
T Consensus 6 ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 6 LIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK------IGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH------HHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555899999999999999999999999999999999999 66532223578999999999999999999999996
Q ss_pred h
Q 045887 90 K 90 (382)
Q Consensus 90 ~ 90 (382)
.
T Consensus 80 ~ 80 (115)
T 3qfl_A 80 V 80 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.3e-11 Score=117.37 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=130.3
Q ss_pred ccccCchHHHHHHHHHHhc----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLM----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 206 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 206 (382)
+..++||+.+++.|.+++. ......+.|+|++|+|||||++.+++.+......-...+|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999998886 445679999999999999999999987322111012467887766667778888888
Q ss_pred HHhCCCCCC-CchHHHHHHHHHHHHhC-CCeEEEEEEcC--------------------C-C--C-eEEEeccc------
Q 045887 207 TALKLSPTK-DEDKVRRARRLLGKLKV-KKKFVLILDYI--------------------D-N--H-MFCWGLRS------ 254 (382)
Q Consensus 207 ~~l~~~~~~-~~~~~~~~~~l~~~l~~-~kr~LlVlDdv--------------------~-~--g-~iivTtR~------ 254 (382)
..++...+. ..+..+....+.+.+.. +++.+||||++ . . + .+|+||+.
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 877654332 23345556666666654 35899999988 1 2 3 56667661
Q ss_pred --------cCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcC---CchhHHHHH-Hhhh--c---C-
Q 045887 255 --------MGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECA---GLQLAIFTV-VGCM--R---G- 316 (382)
Q Consensus 255 --------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~---glPLal~~~-~~~L--~---~- 316 (382)
.....+++++++.++..++|...+..... ...-..+....+++.++ |.|..+..+ .... . +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 11147899999999999999886431110 11122456677777777 999844333 2221 1 1
Q ss_pred -CCChhHHHHHHHHH
Q 045887 317 -VDEIHEWRNALNEL 330 (382)
Q Consensus 317 -~~~~~~w~~~l~~l 330 (382)
.-+.+.+..++...
T Consensus 258 ~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 258 TKVKEEYVYMAKEEI 272 (386)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 24556666665543
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=4.9e-11 Score=113.36 Aligned_cols=221 Identities=17% Similarity=0.191 Sum_probs=143.7
Q ss_pred ccccCchHHHHHHHHHHhc----CCCceEEEEEeCCCCcHHHHHHHHHhchhccc---CCCCceEEEEeCCCCCHHHHHH
Q 045887 131 NTSRRNTKKIVKKVWEDLM----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEET---NEFSDVIWVTVSQPLDLVKLQA 203 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~ 203 (382)
+..++||+.+++.+..++. ....+.+.|+|++|+||||||+.+++.+.... ..-...+|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3568999999999999884 24567899999999999999999998732210 1112367888888888899999
Q ss_pred HHHHHhCCCCCC-CchHHHHHHHHHHHHhC-CCeEEEEEEcC--------------------C----CC--eEEEeccc-
Q 045887 204 EIATALKLSPTK-DEDKVRRARRLLGKLKV-KKKFVLILDYI--------------------D----NH--MFCWGLRS- 254 (382)
Q Consensus 204 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~kr~LlVlDdv--------------------~----~g--~iivTtR~- 254 (382)
.++..++...+. ..+..+....+.+.+.. +++.+||||++ . ++ .+|.||+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 999999764432 23355556667777643 36899999998 1 33 66777761
Q ss_pred -------------cCceeeecCCCChHHHHHHHHHhhcC--CCCCCCCchHHHHHHHHHHcC---Cchh-HHHHHHhhhc
Q 045887 255 -------------MGCEEVIVPPLSKEEALNLFLDKVGR--NILHVPTLNEEIINSVVEECA---GLQL-AIFTVVGCMR 315 (382)
Q Consensus 255 -------------~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~---glPL-al~~~~~~L~ 315 (382)
.+...+.+++++.++..+++...+.. .....++ +....+++.++ |.|- ++..+.....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11246899999999999999887532 1111222 34566777777 9994 3333322211
Q ss_pred -----C--CCChhHHHHHHHHHhhccccCCCChHhHHHHHHHhHhhCCCCCchhHhhhcc
Q 045887 316 -----G--VDEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYRRLKNKKVQHCFLYCA 368 (382)
Q Consensus 316 -----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s 368 (382)
+ .-+.+.+..+++.... ..+.-++..| +++.+..+..++
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l-~~~~~~~l~a~~ 300 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIER-------------DRVSEVVRTL-PLHAKLVLLSIM 300 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSS-CHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcC-CHHHHHHHHHHH
Confidence 1 1456667666665431 1244456667 555555444443
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=6.8e-11 Score=112.54 Aligned_cols=220 Identities=14% Similarity=0.080 Sum_probs=143.1
Q ss_pred cccCchHHHHHHHHHHhc----CCCceEEEEEeCCCCcHHHHHHHHHhchhcc---cCC--CCceEEEEeCCCC-CHHHH
Q 045887 132 TSRRNTKKIVKKVWEDLM----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEE---TNE--FSDVIWVTVSQPL-DLVKL 201 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~---~~~--f~~~~wv~~~~~~-~~~~~ 201 (382)
..++||+.+++.+.+++. ....+.+.|+|++|+|||+||+.+++.+... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999999887664 3456799999999999999999999873221 111 2346788877666 78888
Q ss_pred HHHHHHHh-CCCCC-CCchHHHHHHHHHHHHhCCCeEEEEEEcC-----C--------------CC-eEEEecccc----
Q 045887 202 QAEIATAL-KLSPT-KDEDKVRRARRLLGKLKVKKKFVLILDYI-----D--------------NH-MFCWGLRSM---- 255 (382)
Q Consensus 202 ~~~i~~~l-~~~~~-~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----~--------------~g-~iivTtR~~---- 255 (382)
+..++..+ +.... ...+.......+.+.+.. ++.+||||++ . .+ .+|+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 88888887 33221 122345566777777777 5559999999 1 45 788888721
Q ss_pred --------C-ceeeecCCCChHHHHHHHHHhhcC--CCCCCCCchHHHHHHHHHHcC---Cchh-HHHHHHhh--hc---
Q 045887 256 --------G-CEEVIVPPLSKEEALNLFLDKVGR--NILHVPTLNEEIINSVVEECA---GLQL-AIFTVVGC--MR--- 315 (382)
Q Consensus 256 --------~-~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~---glPL-al~~~~~~--L~--- 315 (382)
. +..+++++++.++..++|...+.. .....+ .+....+++.|+ |.|. ++..+-.. +.
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 1 237899999999999999987531 111122 245667888887 8887 44333322 22
Q ss_pred CCCChhHHHHHHHHHhhccccCCCChHhHHHHHHHhHhhCCCCCchhHhhhccc
Q 045887 316 GVDEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYRRLKNKKVQHCFLYCAL 369 (382)
Q Consensus 316 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~ 369 (382)
..-+.+.+..+++.... ..+.-+++.| +++.+..+..++.
T Consensus 256 ~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l-~~~~~~~l~al~~ 295 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQ-------------ERLIEAVKAL-PFHYKLALRSLIE 295 (384)
T ss_dssp SCCCHHHHHHHHHHHHH-------------HHHHHHHHSS-CHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHhc-------------chHHHHHHcC-CHHHHHHHHHHHH
Confidence 12567777777766431 2344455666 5554444444443
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.32 E-value=8.1e-11 Score=104.00 Aligned_cols=174 Identities=13% Similarity=0.151 Sum_probs=104.9
Q ss_pred cccccCchHHHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
....++||+..++.|..++..+. .+.+.|+|++|+||||||+.+++.+. ....+... .+.. ... ...+...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~~---~~~~---~~~-~~~~~~~ 92 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITAT---PCGV---CDN-CREIEQG 92 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCSS---CCSC---SHH-HHHHHTT
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCC---CCcc---cHH-HHHHhcc
Confidence 34458999999999999887654 45899999999999999999988732 11111000 0000 000 0001000
Q ss_pred hCCC----CCCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEEEecc--------
Q 045887 209 LKLS----PTKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFCWGLR-------- 253 (382)
Q Consensus 209 l~~~----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~iivTtR-------- 253 (382)
.... .............+.+.+. .+++.+||+||+ ..+ .+|+||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 0000011111222222221 126799999999 245 7888876
Q ss_pred -ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhh
Q 045887 254 -SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 314 (382)
Q Consensus 254 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L 314 (382)
...+..+++++++.++..+++...+...+. .-..+....|++.|+|.|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112357899999999999999987643322 1124667889999999999988776543
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.31 E-value=1.2e-10 Score=101.61 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=106.1
Q ss_pred cccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
....++|++..++.+.+++.....+.+.|+|++|+|||+||+.+++.+. ...+. ..+.++.+...+...+...+...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHH
Confidence 3455889999999999999877666699999999999999999988731 12222 23344444333332222222111
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceee
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEV 260 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~ 260 (382)
..... ....++.+||+||+ ..+ .+|+||+ ......+
T Consensus 93 ~~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 93 ARTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HTSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 11100 11137899999999 345 7888877 1123578
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
++++++.++..+++...+...+.. -..+....|++.++|.|..+..+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999998876432211 1245678899999999996555433
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=1.5e-10 Score=110.31 Aligned_cols=175 Identities=14% Similarity=0.190 Sum_probs=123.4
Q ss_pred cccCchHHHHHHHHHHhcC----CCce--EEEEEeCCCCcHHHHHHHHHhchhcccCC-CCceEEEEeCCCCCHHHHHHH
Q 045887 132 TSRRNTKKIVKKVWEDLMG----DKVT--KIGVWGMGGIGKTAIMRHINNRPQEETNE-FSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~----~~~~--vv~I~G~gGvGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 204 (382)
..++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++.+ ... -...+|++++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5689999999999888754 3333 89999999999999999999873 222 124678887777788899999
Q ss_pred HHHHhCCCCCC-CchHHHHHHHHHHHHhC-CCeEEEEEEcC-------------------C---CC-eEEEeccc-----
Q 045887 205 IATALKLSPTK-DEDKVRRARRLLGKLKV-KKKFVLILDYI-------------------D---NH-MFCWGLRS----- 254 (382)
Q Consensus 205 i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~kr~LlVlDdv-------------------~---~g-~iivTtR~----- 254 (382)
++..++...+. ..+.......+.+.+.. +++.+||||++ . .+ .+|++|+.
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988764332 23445555566655542 36899999998 1 46 77777761
Q ss_pred ---------cCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHc---------CCchhHHHHH
Q 045887 255 ---------MGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEEC---------AGLQLAIFTV 310 (382)
Q Consensus 255 ---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c---------~glPLal~~~ 310 (382)
.....+.+++++.++..+++...+..... ...-..+....|++.+ +|.|..+..+
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 11236899999999999999887532110 1122346778899999 7887554443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=1.9e-09 Score=99.83 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=104.3
Q ss_pred cccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
....++|++..++.|.+++..+..+.+.++|++|+|||++|+.+++.+. ...+. ..++++.+...+... .+.++..
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHH-HHHHHHH
Confidence 3455889999999999999887665699999999999999999998731 11121 234444433322222 1222221
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceee
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEV 260 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~ 260 (382)
+..... .+..+++.++|+||+ ..+ .+|+||. ...+..+
T Consensus 96 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 96 FAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 110000 010226899999998 345 7777776 1234578
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH-HHHHH
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA-IFTVV 311 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa-l~~~~ 311 (382)
++++++.++..+++...+...+.. -..+....|++.|+|.|.. +..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999998875432211 1246678899999999954 44443
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=9.4e-09 Score=94.68 Aligned_cols=145 Identities=8% Similarity=0.093 Sum_probs=97.4
Q ss_pred cCchHHHHHHHHHHhc----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCC--CC--ceEEEEeCCCCCHHHHHHHH
Q 045887 134 RRNTKKIVKKVWEDLM----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNE--FS--DVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~--f~--~~~wv~~~~~~~~~~~~~~i 205 (382)
..+|++++++|...|. ++..+.+.|+|++|+|||++++.+++.+...... .. ..+++++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 4678999998876664 5677899999999999999999999985332211 11 25677777777888999999
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHHH--hCCCeEEEEEEcC------------------CCC--eEEEecc----------
Q 045887 206 ATALKLSPTKDEDKVRRARRLLGKL--KVKKKFVLILDYI------------------DNH--MFCWGLR---------- 253 (382)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~~kr~LlVlDdv------------------~~g--~iivTtR---------- 253 (382)
++++................+...+ ..+++++++||++ ..+ .||.++.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 9999653221112223334444443 1237899999999 223 3333343
Q ss_pred -----ccCceeeecCCCChHHHHHHHHHhh
Q 045887 254 -----SMGCEEVIVPPLSKEEALNLFLDKV 278 (382)
Q Consensus 254 -----~~~~~~~~l~~L~~~ea~~Lf~~~a 278 (382)
.++...+.++|++.++-.+++..++
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 2233568999999999999998876
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.1e-08 Score=94.85 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=103.2
Q ss_pred cccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.+. ...+. ..+.++.+.......+ ...+..
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 99 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVI-REKVKE 99 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTT-HHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHH-HHHHHH
Confidence 3455889999999999998877666699999999999999999998731 11111 1333433321111111 111110
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceee
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEV 260 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~ 260 (382)
+... ..+..+++.++|+|++ ..+ .+|+||. ...+..+
T Consensus 100 ~~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 100 FART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 0000 0011126889999998 345 7787776 1134578
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHh
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 312 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~ 312 (382)
.+++++.++..+++...+...+.. -..+....|++.++|.|..+..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999998876543221 2246678899999999987655443
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.79 E-value=1e-07 Score=87.88 Aligned_cols=158 Identities=11% Similarity=0.143 Sum_probs=101.7
Q ss_pred cccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.+ ....+. ..+.++.+.......+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~------- 85 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL--FGENWRDNFIEMNASDERGIDVV------- 85 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH--HTTCHHHHCEEEETTSTTCTTTS-------
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh--cCCcccCCeEEEeCccccChHHH-------
Confidence 344588999999999999887766669999999999999999998873 122221 2334444332111000
Q ss_pred hCCCCCCCchHHHHHHHHHHH--HhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCce
Q 045887 209 LKLSPTKDEDKVRRARRLLGK--LKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCE 258 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~ 258 (382)
......+... +..+++.++|+|++ ..+ .+|+||. ...+.
T Consensus 86 -----------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 86 -----------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp -----------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred -----------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 0111111100 11126889999998 234 6777766 12345
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 259 EVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 259 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
.+++.+++.++..+++...+...+.. -..+....++..++|.|..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78999999999999998876443221 22456788999999999865444
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.78 E-value=1.5e-07 Score=88.81 Aligned_cols=167 Identities=15% Similarity=0.171 Sum_probs=99.6
Q ss_pred cccccCchHHHHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
....++|++..++.|...+..+. .+.+.|+|++|+||||+|+.+++.+. ....+.. ..+... .....+...
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~---~~~~~~----~~~~~~~~~ 85 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGVC----DNCREIEQG 85 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSCS---SCCSSS----HHHHHHHTS
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCCC---CCCccc----HHHHHHhcc
Confidence 34458999999999999887654 46789999999999999999988731 1111100 000000 001111100
Q ss_pred h-------CCCC-CCCchHHHHHHHHHHHHh----CCCeEEEEEEcC------------------CCC-eEEEecc----
Q 045887 209 L-------KLSP-TKDEDKVRRARRLLGKLK----VKKKFVLILDYI------------------DNH-MFCWGLR---- 253 (382)
Q Consensus 209 l-------~~~~-~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv------------------~~g-~iivTtR---- 253 (382)
- .... ..... ...+.+.+. .+++.++|+||+ ..+ .+|++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp CCSSCEEEETTCSCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CCCceEEecccccCCHHH----HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0 0000 00111 122233322 136789999999 234 6666665
Q ss_pred -----ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 254 -----SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 254 -----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
...+..+++.+++.++..+++...+...+. .-..+....|++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 223467899999999999999876532221 1124567889999999998876654
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.78 E-value=5.2e-08 Score=82.48 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=41.8
Q ss_pred ccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...++||+++++.+.+.+.....+.+.|+|++|+|||+||+.+++.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44588999999999999988777788999999999999999998874
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.67 E-value=2.4e-06 Score=78.94 Aligned_cols=174 Identities=10% Similarity=0.015 Sum_probs=105.4
Q ss_pred cccccCchHHHHHHHHHHhc-----CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLM-----GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 204 (382)
....++|++..+..+..++. ......+.|+|++|+|||+||+.+++.+ .. ...+++.+......++...
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~~ 83 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAAI 83 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHHH
Confidence 34558899988888877764 2344678999999999999999998872 22 2345555444343333332
Q ss_pred HHHHhCCC------CCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---------CCC-eEEEecc---------ccCc-e
Q 045887 205 IATALKLS------PTKDEDKVRRARRLLGKLKVKKKFVLILDYI---------DNH-MFCWGLR---------SMGC-E 258 (382)
Q Consensus 205 i~~~l~~~------~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------~~g-~iivTtR---------~~~~-~ 258 (382)
+...+... .-+..+ ......+.+.+.. ..+-+|.++- .++ .++.||. .... .
T Consensus 84 l~~~~~~~~~l~lDEi~~l~-~~~~~~L~~~l~~-~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~ 161 (324)
T 1hqc_A 84 LANSLEEGDILFIDEIHRLS-RQAEEHLYPAMED-FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI 161 (324)
T ss_dssp HTTTCCTTCEEEETTTTSCC-HHHHHHHHHHHHH-SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSC
T ss_pred HHHhccCCCEEEEECCcccc-cchHHHHHHHHHh-hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccE
Confidence 22111110 001111 2234445555555 5554444332 124 5666665 1112 4
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhhh
Q 045887 259 EVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 314 (382)
Q Consensus 259 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~L 314 (382)
.+.+++++.++..+++...+...+.. -..+....++..|+|.|-.+..+...+
T Consensus 162 ~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 162 VEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 67999999999999998876543321 224677889999999998887765543
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.67 E-value=1.1e-07 Score=83.69 Aligned_cols=148 Identities=17% Similarity=0.207 Sum_probs=94.0
Q ss_pred cccCch---HHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 132 TSRRNT---KKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 132 ~~~~gr---~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
..+++. +..++.+..+...+..+.+.|+|++|+||||||+.+++.+. .....+.|++++...+. +..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~- 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA- 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG-
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH-
Confidence 345552 46667777776666678899999999999999999998832 12234567765432110 000
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---------------------CCC--eEEEecc-cc----C----
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI---------------------DNH--MFCWGLR-SM----G---- 256 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g--~iivTtR-~~----~---- 256 (382)
..+.+ . ++.+||+||+ ..+ .+|+||+ .. .
T Consensus 98 -----------------~~~~~-~-~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 98 -----------------LLEGL-E-QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp -----------------GGTTG-G-GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred -----------------HHHhc-c-CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 00011 2 4567788887 223 4788877 11 0
Q ss_pred ----c---eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 257 ----C---EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 257 ----~---~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
. ..+++++++.++..+++...+...+. .-..+....+++.++|.+-.+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1 56799999999999999887643222 1224667789999999887665443
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=3.9e-07 Score=85.30 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=101.7
Q ss_pred ccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCC-CceEEEEeCCCCCHHHHHHHHHHHh
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEF-SDVIWVTVSQPLDLVKLQAEIATAL 209 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 209 (382)
...++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.+.. ...+ .....++.+.......+ .+.+..+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG-PDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH-HHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC-CcccccceEEEccccccchHHH-HHHHHHH
Confidence 3457888999999999998776555999999999999999999887321 1011 12334444433233222 2222111
Q ss_pred CC-CCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceee
Q 045887 210 KL-SPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEV 260 (382)
Q Consensus 210 ~~-~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~ 260 (382)
.. ........ .......+++-+|++|++ ... +++++|. ...+..+
T Consensus 114 ~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 114 ARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 10 00000000 001111125568899988 233 6666665 1123567
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
.+.+++.++....+...+...+... .++....|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999988764432212 2467788999999999875444
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.54 E-value=1.3e-06 Score=84.60 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=96.5
Q ss_pred cccccCchHHHH---HHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHH
Q 045887 130 NNTSRRNTKKIV---KKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEI 205 (382)
Q Consensus 130 ~~~~~~gr~~~~---~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 205 (382)
....++|.+..+ ..|...+..+..+.+.++|++|+||||||+.+++. .... ++.++.. .....+ +.+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~---~~~~-----f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY---ANAD-----VERISAVTSGVKEI-REA 94 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH---TTCE-----EEEEETTTCCHHHH-HHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH---hCCC-----eEEEEeccCCHHHH-HHH
Confidence 344578888877 67777777777788999999999999999999987 2222 2222221 122211 111
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---------------CCC--eEEEec-c----------ccCc
Q 045887 206 ATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI---------------DNH--MFCWGL-R----------SMGC 257 (382)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------------~~g--~iivTt-R----------~~~~ 257 (382)
..........+++.+|++|++ ..| .+|.+| . ...+
T Consensus 95 -----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 95 -----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp -----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTE
T ss_pred -----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCce
Confidence 111111111237899999999 223 444444 3 1234
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCC----CCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 258 EEVIVPPLSKEEALNLFLDKVGRNIL----HVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 258 ~~~~l~~L~~~ea~~Lf~~~a~~~~~----~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
..+.+++++.++...++.+.+..... ....-..+....|++.++|.+-.+..+
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 57799999999999999887643111 011123456778888899888655444
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=2.1e-06 Score=77.96 Aligned_cols=174 Identities=13% Similarity=0.135 Sum_probs=102.2
Q ss_pred cccCchHHHHHHHHHHhcC-------------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH
Q 045887 132 TSRRNTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 198 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 198 (382)
...+|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++. .... .+.++.+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~---~~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE---TNAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH---TTCE---EEEEEGGGGC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH---hCCC---EEEEehHHHH--
Confidence 4477888888888776632 34567999999999999999999987 2221 2233322110
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------C
Q 045887 199 VKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------D 244 (382)
Q Consensus 199 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~ 244 (382)
... ..........+........+.+|+||++ .
T Consensus 89 ------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 ------------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 000 1112223333333333336789999988 1
Q ss_pred CC-eEEEecc----------cc-Cc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC-chhHHHHH
Q 045887 245 NH-MFCWGLR----------SM-GC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG-LQLAIFTV 310 (382)
Q Consensus 245 ~g-~iivTtR----------~~-~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 310 (382)
.+ .||.||. .. .. ..+.+++++.++..++|...+.......... ...++..+.| .|-.+..+
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 24 5777776 11 12 4679999999999999988865433222222 3557777777 45344433
Q ss_pred Hh------hhcC--CCChhHHHHHHHHHh
Q 045887 311 VG------CMRG--VDEIHEWRNALNELR 331 (382)
Q Consensus 311 ~~------~L~~--~~~~~~w~~~l~~l~ 331 (382)
.. ..+. .-+.+.+..++....
T Consensus 231 ~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 231 CTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 22 1122 144566666666554
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.4e-06 Score=81.69 Aligned_cols=173 Identities=10% Similarity=0.082 Sum_probs=97.4
Q ss_pred cccccCchHHHHHHHHHHh-cCCCceEEEEEeCCCCcHHHHHHHHHhchhccc-CC--CCc-------------------
Q 045887 130 NNTSRRNTKKIVKKVWEDL-MGDKVTKIGVWGMGGIGKTAIMRHINNRPQEET-NE--FSD------------------- 186 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l-~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~-~~--f~~------------------- 186 (382)
....++|.+..++.+.+++ ..+..+.+.|+|++|+||||+++.+++.+.... +. ++.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 3445788899999998888 666554599999999999999999988521110 00 000
Q ss_pred -eEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC
Q 045887 187 -VIWVTVSQPL-DLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH 246 (382)
Q Consensus 187 -~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g 246 (382)
.+.+..+... ......++++..+.....-.. .. .+ ..+.. ++-++|+|++ ..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-~l-s~l~~-~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF----QD-SK-DGLAH-RYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccccc----cc-cc-cccCC-CCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 1111111100 000012222222211110000 00 00 00223 6679999998 345
Q ss_pred -eEEEecc---------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 045887 247 -MFCWGLR---------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 311 (382)
Q Consensus 247 -~iivTtR---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~ 311 (382)
.+|++|. ...+..+++++++.++..+.+...+...+...+ .++....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777776 223467899999999999999887643221111 02567789999999987665554
No 27
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=1.7e-06 Score=85.55 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=99.0
Q ss_pred ccccCchHHHHHHHHHHhcC-----------------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeC
Q 045887 131 NTSRRNTKKIVKKVWEDLMG-----------------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVS 193 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~-----------------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 193 (382)
...++|++..++.|.+++.. +..+.+.|+|++|+||||+|+.+++.+ .+ ..+.++.+
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNAS 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCC
Confidence 34578999999999998865 134789999999999999999999882 12 24455555
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH-HhCCCeEEEEEEcC-------------------CCC-eEEEec
Q 045887 194 QPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGK-LKVKKKFVLILDYI-------------------DNH-MFCWGL 252 (382)
Q Consensus 194 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~kr~LlVlDdv-------------------~~g-~iivTt 252 (382)
...... .....+........ ... ......+. ....++.+|++|++ ..+ .||+++
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~~-~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~ 186 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNMS-VVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILIC 186 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBCC-STT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEE
T ss_pred CcchHH-HHHHHHHHHhcccc-HHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEE
Confidence 443332 22332222211000 000 00000000 11137889999999 123 455554
Q ss_pred c----------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHH
Q 045887 253 R----------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTV 310 (382)
Q Consensus 253 R----------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 310 (382)
. ...+..+.+++++.++..+.+...+...+...++ +....|++.++|. +-++..+
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 4 1123568999999999999988776443322222 4567799999994 4455544
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.46 E-value=8.8e-06 Score=75.69 Aligned_cols=170 Identities=11% Similarity=0.003 Sum_probs=95.7
Q ss_pred cccccCchHHHHHHHHHHhcC-----CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMG-----DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 204 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 204 (382)
....++|++..++.+..++.. .....+.|+|++|+|||+||+.+++. .... .+.++.+....... ...
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~---~~~~---~~~~~~~~~~~~~~-~~~ 99 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE---MSAN---IKTTAAPMIEKSGD-LAA 99 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH---TTCC---EEEEEGGGCCSHHH-HHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH---hCCC---eEEecchhccchhH-HHH
Confidence 344588999988888877752 34567899999999999999999887 3222 23344333222222 222
Q ss_pred HHHHhCCCCC----C-CchHHHHHHHHHHHHhCCCeEEEEEEcC---------CCC-eEEEecc---------ccCc-ee
Q 045887 205 IATALKLSPT----K-DEDKVRRARRLLGKLKVKKKFVLILDYI---------DNH-MFCWGLR---------SMGC-EE 259 (382)
Q Consensus 205 i~~~l~~~~~----~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------~~g-~iivTtR---------~~~~-~~ 259 (382)
++........ + ..-.......+.+.+.. .++.++..+- .++ .+|.+|. .... ..
T Consensus 100 ~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~ 178 (338)
T 3pfi_A 100 ILTNLSEGDILFIDEIHRLSPAIEEVLYPAMED-YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQ 178 (338)
T ss_dssp HHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHT-SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred HHHhccCCCEEEEechhhcCHHHHHHHHHHHHh-ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEE
Confidence 2222111000 0 00012334445555555 4444444331 123 4555554 1122 56
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 260 VIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 260 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
+.+++++.++...++...+..... .-..+....|++.+.|.|-.+..+
T Consensus 179 i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 179 FRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 899999999999999877643221 122466788899999999555443
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=1.7e-06 Score=83.78 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCC-ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCch
Q 045887 140 IVKKVWEDLMGDK-VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDED 218 (382)
Q Consensus 140 ~~~~l~~~l~~~~-~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 218 (382)
....+......+. ...+.|+|++|+||||||+.+++.+...... ..+++++.. .+...+...+... .
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~~------~~~~~~~~~~~~~-----~ 183 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSE------KFLNDLVDSMKEG-----K 183 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEHH------HHHHHHHHHHHTT-----C
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHH------HHHHHHHHHHHcc-----c
Confidence 3444455544443 6789999999999999999999983221111 124555432 3344444443221 0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEcC---------------------CCC-eEEEeccc-------cC------c---eee
Q 045887 219 KVRRARRLLGKLKVKKKFVLILDYI---------------------DNH-MFCWGLRS-------MG------C---EEV 260 (382)
Q Consensus 219 ~~~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g-~iivTtR~-------~~------~---~~~ 260 (382)
...+.+.+.. +..+|++||+ ..| .||+||.. .. . ..+
T Consensus 184 ----~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i 258 (440)
T 2z4s_A 184 ----LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVA 258 (440)
T ss_dssp ----HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCC
T ss_pred ----HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEE
Confidence 1123334443 5679999998 456 78888871 10 1 356
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhh------hcCC-CChhHHHHHHHHH
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC------MRGV-DEIHEWRNALNEL 330 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~------L~~~-~~~~~w~~~l~~l 330 (382)
.+++++.++..+++.+.+...+...++ +....|+..++|.+-.+..+... +.+. -+.+.+..++...
T Consensus 259 ~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 259 KLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 899999999999998876432222222 44677889999988655433221 1222 4566666666543
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.36 E-value=1.6e-05 Score=73.50 Aligned_cols=154 Identities=14% Similarity=0.204 Sum_probs=93.3
Q ss_pred cccCchHHHHHHHHHHhc----------C--CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHH
Q 045887 132 TSRRNTKKIVKKVWEDLM----------G--DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 199 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~----------~--~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 199 (382)
...+|.+..++.|.+.+. . ...+-+.++|++|+|||+||+.+++. .... .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~---~~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE---ANST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH---HTCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH---HCCC---EEEEchH------
Confidence 446788888888877661 1 12467999999999999999999987 2222 2233321
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC--------------------------------CCC-
Q 045887 200 KLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI--------------------------------DNH- 246 (382)
Q Consensus 200 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--------------------------------~~g- 246 (382)
.+ .. .. ..........+.......++.+|+||++ ..+
T Consensus 86 ~l----~~----~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VS----KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HT----TT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hh----cc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 10 00 1122333444444444437789999998 123
Q ss_pred eEEEecc---cc------Cc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHH
Q 045887 247 MFCWGLR---SM------GC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTV 310 (382)
Q Consensus 247 ~iivTtR---~~------~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 310 (382)
.||.||. .. .. ..+.++..+.++-.++|...+..... .-.......|++.+.|. +-.|..+
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4555665 11 11 45688999999999999988654322 11234567888898874 4344443
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.36 E-value=2.6e-05 Score=71.10 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=92.5
Q ss_pred ccccCchHHHHHHHHHHhcC------------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH
Q 045887 131 NTSRRNTKKIVKKVWEDLMG------------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 198 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~------------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 198 (382)
...++|.+..++.|.+.+.. ...+.+.|+|++|+|||++|+.+++. ... ..+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~---~~~---~~~~i~~~~l~~- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE---CSA---TFLNISAASLTS- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH---TTC---EEEEEESTTTSS-
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH---hCC---CeEEeeHHHHhh-
Confidence 34577888888888776621 23468999999999999999999887 221 123444332110
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------C
Q 045887 199 VKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------D 244 (382)
Q Consensus 199 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~ 244 (382)
... .........+.......++.+|++|++ +
T Consensus 93 -------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 112222333333333236788899987 0
Q ss_pred CC-eEEEeccc---c------Cc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHHH
Q 045887 245 NH-MFCWGLRS---M------GC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTVV 311 (382)
Q Consensus 245 ~g-~iivTtR~---~------~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~~ 311 (382)
.+ .|+.||.. . .. ..+.++..+.++...++...+..... .-..+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23 45556651 1 11 45678888888888888776533221 1123566789999999876 454443
No 32
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.35 E-value=1.5e-05 Score=74.09 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccC-------------------CCCceEEEEeC---C
Q 045887 138 KKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETN-------------------EFSDVIWVTVS---Q 194 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~~---~ 194 (382)
+...+.+...+.++.. +.+.++|++|+|||++|+.+++.+..... +++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 5566777777777654 67999999999999999999887311110 111 2233221 1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc--
Q 045887 195 PLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR-- 253 (382)
Q Consensus 195 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR-- 253 (382)
...... .+.+.+.+.... .. +++-++|+|++ .++ .+|++|.
T Consensus 87 ~~~i~~-ir~l~~~~~~~~----------------~~-~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEHA----------------RL-GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SBCHHH-HHHHHHHTTSCC----------------TT-SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCHHH-HHHHHHHHhhcc----------------cc-CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 111111 122222222111 01 25778888888 234 5555554
Q ss_pred -------ccCceeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 045887 254 -------SMGCEEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 310 (382)
Q Consensus 254 -------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 310 (382)
...+..+++++++.++..+.+..... . ..+.+..++..++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 23456789999999999999988741 1 1355678999999999766443
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.35 E-value=2.5e-05 Score=73.34 Aligned_cols=156 Identities=13% Similarity=0.163 Sum_probs=93.6
Q ss_pred cccCchHHHHHHHHHHhc------------CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHH
Q 045887 132 TSRRNTKKIVKKVWEDLM------------GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 199 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 199 (382)
..++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++. ... ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~---~~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ---SGA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH---TTC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH---cCC---eEEEEehHHhhc--
Confidence 346788888888877653 123568999999999999999999887 221 134444432111
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC---------------------------------CCC
Q 045887 200 KLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI---------------------------------DNH 246 (382)
Q Consensus 200 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv---------------------------------~~g 246 (382)
.. ..........+.......++.+|+||++ ..+
T Consensus 156 ------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 ------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 0112222333333333236788889977 123
Q ss_pred -eEEEecc---------ccCc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC-chhHHHHHHh
Q 045887 247 -MFCWGLR---------SMGC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG-LQLAIFTVVG 312 (382)
Q Consensus 247 -~iivTtR---------~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~~~ 312 (382)
.||.||. .... ..+.++..+.++..+++...+....... ..+....|++.+.| .|-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555665 1112 3568899999999998887764332111 24567889999988 4555555543
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=1.3e-05 Score=74.72 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=93.9
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCC-ceEEEEeCCCCCHHHHHHHHHHHhC
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
...+|.+..++.|...+..+..+.+.++|++|+||||+|+.+++.+. ...+. ....++.+.......+. .++..+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir-~~i~~~~ 101 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVR-NQIKDFA 101 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHH-HHHHHHH
Confidence 34667788888888888887665599999999999999999998731 12221 12233333222222221 1111110
Q ss_pred CCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------CCC-eEEEecc---------ccCceeeec
Q 045887 211 LSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------DNH-MFCWGLR---------SMGCEEVIV 262 (382)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------~~g-~iivTtR---------~~~~~~~~l 262 (382)
.... .+.+ .+-++|+|++ ... .++++|. ...+..+.+
T Consensus 102 ~~~~--------------~~~~-~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 102 STRQ--------------IFSK-GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HBCC--------------SSSC-SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred hhcc--------------cCCC-CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 0000 0012 4667788877 233 5666655 123457799
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 263 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 263 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
.+++.++..+.+...+-...... ..+....|++.++|.+--+..
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 99999999988887653222111 235677899999998875433
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.33 E-value=3.8e-05 Score=71.01 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=89.0
Q ss_pred cCchHHHHHHHHHHhc------------CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHH
Q 045887 134 RRNTKKIVKKVWEDLM------------GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 201 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 201 (382)
..|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++.+ ... ..+.++.+.-.
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~---~~~~i~~~~l~----- 83 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNS---TFFSISSSDLV----- 83 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSC---EEEEEECCSSC-----
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc--CCC---cEEEEEhHHHH-----
Confidence 5566666666655441 1124679999999999999999999872 011 12334433211
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC--------------------------------CCC-eE
Q 045887 202 QAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI--------------------------------DNH-MF 248 (382)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--------------------------------~~g-~i 248 (382)
.... ... ......+.+.....++.+|++|++ ..+ .|
T Consensus 84 ---------~~~~-g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ---------SKWL-GES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ---------CSSC-CSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ---------hhhh-hHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0000 111 223333343333337889999988 122 34
Q ss_pred EEecc---c------cCc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHHH
Q 045887 249 CWGLR---S------MGC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTVV 311 (382)
Q Consensus 249 ivTtR---~------~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~~ 311 (382)
|.||. . ... ..+.++..+.++-.++|...+....... .......|++.+.|..- .|..+.
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 44554 1 122 4568899999999999988764332111 23566789999988743 354443
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.32 E-value=8.9e-07 Score=74.49 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=41.6
Q ss_pred ccccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 131 NTSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...++|++.+++.+.+.+.....+.+.|+|++|+|||+||+.+++.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44588999999999999988777788999999999999999998873
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.31 E-value=7.3e-06 Score=77.12 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=36.1
Q ss_pred ccccCchHHHHHH---HHHHhcCCCc--eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 131 NTSRRNTKKIVKK---VWEDLMGDKV--TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 131 ~~~~~gr~~~~~~---l~~~l~~~~~--~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...++|++..++. +.+.+..+.. +.+.|+|++|+|||+||+.+++.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4457888887665 4555555443 58999999999999999999988
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.30 E-value=6e-05 Score=67.12 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=77.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
.+.+.|+|++|+|||++|+.+++. .... .+.++.+.-.+ ...... ......+......
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~---~~~~---~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~~a~~ 96 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE---AQVP---FLAMAGAEFVE---------------VIGGLG-AARVRSLFKEARA 96 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH---HTCC---EEEEETTTTSS---------------SSTTHH-HHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH---hCCC---EEEechHHHHh---------------hccChh-HHHHHHHHHHHHh
Confidence 456889999999999999999987 2222 33444433211 000111 1122223333322
Q ss_pred CCeEEEEEEcCC-----------------------------------CC-eEEEecc----------cc-Cc-eeeecCC
Q 045887 233 KKKFVLILDYID-----------------------------------NH-MFCWGLR----------SM-GC-EEVIVPP 264 (382)
Q Consensus 233 ~kr~LlVlDdv~-----------------------------------~g-~iivTtR----------~~-~~-~~~~l~~ 264 (382)
..+.+|++|+++ .+ .||.||. .. .. ..+.+++
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 257888888881 23 4566664 11 12 4668999
Q ss_pred CChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHH
Q 045887 265 LSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTV 310 (382)
Q Consensus 265 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~ 310 (382)
.+.++-.+++...+..... ..........+++.+.|.+- .+..+
T Consensus 177 p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 9999999999887643221 12222234778888888754 44443
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.29 E-value=1.1e-05 Score=74.64 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=92.0
Q ss_pred cccccCchHHHHHHHHHHhcCCCc-eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 130 NNTSRRNTKKIVKKVWEDLMGDKV-TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 130 ~~~~~~gr~~~~~~l~~~l~~~~~-~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
....++|.+..++.+.+++..+.. +++.+.|++|+|||++|+.+++.+ . ...+.++.+.. ... .++.++..
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~-~i~~~~~~ 95 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KID-FVRGPLTN 95 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHH-HHHTHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHH-HHHHHHHH
Confidence 344578999999999999987654 577888889999999999999882 1 12445554332 222 22221111
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-------------------CCC-eEEEecc---------ccCcee
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-------------------DNH-MFCWGLR---------SMGCEE 259 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-------------------~~g-~iivTtR---------~~~~~~ 259 (382)
.....+ ..+ ++.+|++|++ ..+ .+|+||. ...+..
T Consensus 96 ~~~~~~---------------~~~-~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 96 FASAAS---------------FDG-RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHBCC---------------CSS-CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHhhcc---------------cCC-CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 100000 012 6778889988 234 7777776 112356
Q ss_pred eecCCCChHHHHHH-------HHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 260 VIVPPLSKEEALNL-------FLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 260 ~~l~~L~~~ea~~L-------f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
+++++++.++-.++ +...+...+...+ ..+....|++.++|.+-.+..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA--DMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS--CHHHHHHHHHHTCSCTTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHhCCCCHHHHHH
Confidence 89999998884333 2222222121111 126677899999888765433
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.24 E-value=4.8e-05 Score=68.41 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGK 229 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 229 (382)
....+.+.|+|++|+|||+||+.+++. .... .+.++.+... .+. ...........+.+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~---~~~~---~~~i~~~~~~------------~g~---~~~~~~~~~~~~~~~ 119 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE---SNFP---FIKICSPDKM------------IGF---SETAKCQAMKKIFDD 119 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH---HTCS---EEEEECGGGC------------TTC---CHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH---hCCC---EEEEeCHHHh------------cCC---chHHHHHHHHHHHHH
Confidence 445678999999999999999999887 2222 2223322110 000 001111122222222
Q ss_pred HhCCCeEEEEEEcC-------------------------C----CC---eEEEecc------c---cC--ceeeecCCCC
Q 045887 230 LKVKKKFVLILDYI-------------------------D----NH---MFCWGLR------S---MG--CEEVIVPPLS 266 (382)
Q Consensus 230 l~~~kr~LlVlDdv-------------------------~----~g---~iivTtR------~---~~--~~~~~l~~L~ 266 (382)
....+..+|+||++ . .+ .||.||. . .+ +..+.+++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 22226888999985 1 33 3556666 1 11 2567899999
Q ss_pred h-HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC------chhHHHHHHhhhcCCCChhHHHHHHHHHh
Q 045887 267 K-EEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG------LQLAIFTVVGCMRGVDEIHEWRNALNELR 331 (382)
Q Consensus 267 ~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g------lPLal~~~~~~L~~~~~~~~w~~~l~~l~ 331 (382)
. ++-..++.... . . ..+....|++.+.| .+-++..+-..... .+...+..+++.+.
T Consensus 200 ~r~~i~~i~~~~~-~----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~-~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 200 TGEQLLEALELLG-N----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM-DPEYRVRKFLALLR 262 (272)
T ss_dssp EHHHHHHHHHHHT-C----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-C----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-chHHHHHHHHHHHH
Confidence 8 66666665531 1 1 14567788888887 33444333333222 34456666666554
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.23 E-value=4.9e-05 Score=72.21 Aligned_cols=156 Identities=11% Similarity=0.125 Sum_probs=93.0
Q ss_pred ccccCchHHHHHHHHHHhcC------------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH
Q 045887 131 NTSRRNTKKIVKKVWEDLMG------------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 198 (382)
Q Consensus 131 ~~~~~gr~~~~~~l~~~l~~------------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 198 (382)
....+|.+..++.|.+.+.. ...+-+.|+|.+|+|||+||+.+++. ... ..+.++.+.-.+.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~---~~~---~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE---SNA---TFFNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH---TTC---EEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh---hcC---cEEEeeHHHhhcc
Confidence 34478888888888877621 12468999999999999999999887 221 1234433322110
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC--------------------------------CCC
Q 045887 199 VKLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI--------------------------------DNH 246 (382)
Q Consensus 199 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--------------------------------~~g 246 (382)
. . ... ......+........+.+|+||++ .+.
T Consensus 188 --~-------~------g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 188 --Y-------V------GEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp -------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --c-------c------chH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0 001 122233333333326688999998 022
Q ss_pred --eEEEecc---------ccCc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHHH
Q 045887 247 --MFCWGLR---------SMGC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTVV 311 (382)
Q Consensus 247 --~iivTtR---------~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~~ 311 (382)
.||.||. .... ..+.++..+.++..+++...+..... .-..+....|++.+.|..- ++..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3454555 1122 35789999999999999887654322 1223567789999988654 555543
No 42
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.1e-05 Score=73.12 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=96.6
Q ss_pred cCchHHHHHHHHHHh----cC---------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDL----MG---------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l----~~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|-++.+++|.+.+ .. ...+-|.++|++|+|||.||+.+++. .... .+.++.+.-.+
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e---~~~~---f~~v~~s~l~s--- 220 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH---TDCK---FIRVSGAELVQ--- 220 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH---HTCE---EEEEEGGGGSC---
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh---hCCC---ceEEEhHHhhc---
Confidence 456666666665443 22 23567999999999999999999998 3222 23444332110
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
. . ....+.....++...+...+++|++|++ ..+
T Consensus 221 -----------k-~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -----------K-Y-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -----------S-S-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -----------c-c-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 0 0 0112233333443333336777777777 234
Q ss_pred -eEEEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH-HHHH--
Q 045887 247 -MFCWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA-IFTV-- 310 (382)
Q Consensus 247 -~iivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa-l~~~-- 310 (382)
.||.||. ..|- ..++++..+.++-.++|+.+.-.-....+.+ ...|++.+.|.--| |..+
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCHHHHHHHHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCHHHHHHHHH
Confidence 5666776 2222 5678999999999999987754332222223 35577888876533 2222
Q ss_pred -Hh--hhcCC---CChhHHHHHHHHHh
Q 045887 311 -VG--CMRGV---DEIHEWRNALNELR 331 (382)
Q Consensus 311 -~~--~L~~~---~~~~~w~~~l~~l~ 331 (382)
|+ .++.+ -+.+++..++++..
T Consensus 364 eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 364 EAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp HHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 21 22322 34566666666543
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.22 E-value=3.1e-05 Score=71.59 Aligned_cols=141 Identities=17% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHHHHHHhcCC--CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCch
Q 045887 141 VKKVWEDLMGD--KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDED 218 (382)
Q Consensus 141 ~~~l~~~l~~~--~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 218 (382)
...+...+..+ ....+.|+|++|+||||||+.+++.+... .+ ..++++. ..+...+...+... .
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~~~~~~~-----~ 88 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMVEHLKKG-----T 88 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHHHHHHHT-----C
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHHHHHHcC-----c
Confidence 44455555444 35689999999999999999999883221 12 2455543 23333333332110 0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEcC---------------------CCC-eEEEecc-c--------------cCc-eee
Q 045887 219 KVRRARRLLGKLKVKKKFVLILDYI---------------------DNH-MFCWGLR-S--------------MGC-EEV 260 (382)
Q Consensus 219 ~~~~~~~l~~~l~~~kr~LlVlDdv---------------------~~g-~iivTtR-~--------------~~~-~~~ 260 (382)
...+...+. +..+|++|++ ..| .+++||. . ... ..+
T Consensus 89 ----~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 89 ----INEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp ----HHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred ----HHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 111222232 4679999998 345 7777775 1 011 457
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 045887 261 IVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 261 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
++++ +.++..+++...+...+...+ ++....|++.+ |.+-.
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 8999 999999999887643322122 45677788888 76643
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.16 E-value=3.5e-05 Score=72.27 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=88.8
Q ss_pred ccCchHHHHHHHHHHhc----C--------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 133 SRRNTKKIVKKVWEDLM----G--------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~----~--------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..+|.+..++.|.+.+. . ...+-|.++|++|+|||+||+.+++.+ ... .+.++.+ +
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------D 119 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------H
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------H
Confidence 46777777777776652 1 123568899999999999999999982 221 2233321 1
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC--------------------------------CCC-e
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI--------------------------------DNH-M 247 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--------------------------------~~g-~ 247 (382)
+. ... . ... ......+.......++.+|+||++ ..+ .
T Consensus 120 l~----~~~----~-g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 LV----SKW----M-GES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----SCC--------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred Hh----hhh----c-chH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 100 0 011 222333333333337889999988 123 4
Q ss_pred EEEeccc---c------Cc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHH
Q 045887 248 FCWGLRS---M------GC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTV 310 (382)
Q Consensus 248 iivTtR~---~------~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 310 (382)
||.||.. . .. ..+.++..+.++-.++|...+....... .......|++.+.|. |-.|..+
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 5555651 1 12 4568899999999999988765432211 134567899999885 4334443
No 45
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.6e-05 Score=74.68 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=83.8
Q ss_pred cCchHHHHHHHHHHh----cCC---------CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDL----MGD---------KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l----~~~---------~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|-++.++.|.+.+ ..+ ..+-|.++|++|+|||.||+.+++. .... .+.++.+.-.
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e---~~~~---f~~v~~s~l~---- 252 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ---TNAT---FLKLAAPQLV---- 252 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH---HTCE---EEEEEGGGGC----
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH---hCCC---EEEEehhhhh----
Confidence 456677777666543 222 3578999999999999999999998 2222 2334432211
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
... ..........++...+...+++|++|++ ..+
T Consensus 253 ----------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 253 ----------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp ----------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred ----------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 110 0112223333333333236778888877 234
Q ss_pred -eEEEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 247 -MFCWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 247 -~iivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
.||.||. ..+- ..++++..+.++-.++|+.++..-....+.+ ...|++.+.|.-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 5566776 1222 4678998888888888876653222212222 355777887754
No 46
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=3.9e-05 Score=70.24 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=31.8
Q ss_pred cCchHHHHHHHHHHhc---------------CCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 134 RRNTKKIVKKVWEDLM---------------GDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~---------------~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|.+..++.|.+.+. ......+.|+|++|+|||+||+.+++.+
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4565666655554432 2344579999999999999999998874
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=6.3e-05 Score=72.04 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=85.1
Q ss_pred cCchHHHHHHHHHHh----cC---------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDL----MG---------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l----~~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|-++.++.|.+.+ .. ...+-|.++|++|+|||+||+.+++. .... .+.++.+.-.+
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e---~~~~---~~~v~~s~l~s--- 253 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT---IGAN---FIFSPASGIVD--- 253 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH---HTCE---EEEEEGGGTCC---
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH---hCCC---EEEEehhhhcc---
Confidence 346666666655443 22 23578999999999999999999998 2222 23444332111
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
. . ..........++.......+++|++|++ ..+
T Consensus 254 -----------k-~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -----------K-Y-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -----------S-S-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -----------c-c-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 0 0 1112233333443333336788888877 234
Q ss_pred -eEEEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 045887 247 -MFCWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 305 (382)
Q Consensus 247 -~iivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 305 (382)
.||.||. ..|- ..|+++..+.++-.++|..+...-......+ ...|++.+.|.--
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sG 388 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNG 388 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCH
Confidence 5677776 1221 4678888888888888887754332222223 3457778877643
No 48
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.13 E-value=0.0001 Score=67.47 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=85.0
Q ss_pred ccCchHHHHHHHHHHhcC-------------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHH
Q 045887 133 SRRNTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 199 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 199 (382)
..+|.+..++.|.+.+.. ...+.+.++|++|+|||+||+.+++. .... .+.++ ..
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~---~~~~---~i~v~------~~ 83 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE---CQAN---FISIK------GP 83 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH---TTCE---EEEEC------HH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH---hCCC---EEEEE------hH
Confidence 366777776666655431 33567999999999999999999987 2221 22232 22
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CC
Q 045887 200 KLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DN 245 (382)
Q Consensus 200 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~ 245 (382)
.+.... .+... . ....+........+.+|++|++ ..
T Consensus 84 ~l~~~~---~g~~~---~----~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELLTMW---FGESE---A----NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHH---HTTCT---T----HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHhhh---cCchH---H----HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222222 12111 1 1122222222226789999987 12
Q ss_pred C-eEEEecc----------cc-Cc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 045887 246 H-MFCWGLR----------SM-GC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 246 g-~iivTtR----------~~-~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
+ .||.||. .. .. ..+.++..+.++-.++|...+.......+..+ ..++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 4 5666666 11 12 46789999999999998877643322122222 3466677777654
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.09 E-value=4e-05 Score=80.29 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=80.8
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhc--ccCCC-C-ceEEEEeCCCCCHHHHHHHHHH
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQE--ETNEF-S-DVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~--~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
..++||+.++..+++.+.....+.+.++|.+|+|||+||+.+++.+.. +.... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 347899999999999998776677899999999999999999987321 11111 1 233443322100
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHhC-CCeEEEEEEcC------------------------CCC-eEEEecc--------
Q 045887 208 ALKLSPTKDEDKVRRARRLLGKLKV-KKKFVLILDYI------------------------DNH-MFCWGLR-------- 253 (382)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv------------------------~~g-~iivTtR-------- 253 (382)
+. ............+.+.+.. +++.+|++|++ ..+ .+|.+|.
T Consensus 240 --g~--~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~ 315 (854)
T 1qvr_A 240 --GA--KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIE 315 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHT
T ss_pred --cC--ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhc
Confidence 00 0011223334444444443 36789999988 123 4555543
Q ss_pred -----ccCceeeecCCCChHHHHHHHHHh
Q 045887 254 -----SMGCEEVIVPPLSKEEALNLFLDK 277 (382)
Q Consensus 254 -----~~~~~~~~l~~L~~~ea~~Lf~~~ 277 (382)
......+.+++++.++..+++...
T Consensus 316 ~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 316 KDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp TCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 011245889999999999998754
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=6.9e-05 Score=71.11 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=84.7
Q ss_pred cCchHHHHHHHHHHh----cCC---------CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDL----MGD---------KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l----~~~---------~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|-++.++.|.+.+ ..+ ..+-|.++|++|+|||.||+.+++. .... .+.++.+.-
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e---~~~~---fi~v~~s~l----- 252 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ---TSAT---FLRIVGSEL----- 252 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH---HTCE---EEEEESGGG-----
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH---hCCC---EEEEEHHHh-----
Confidence 446666666665443 222 3578999999999999999999998 2222 233332221
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
.... ....+.....++.......+++|++|++ ..+
T Consensus 253 ---------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 253 ---------IQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp ---------CCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ---------hhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 1110 1122333444444443336788888877 234
Q ss_pred -eEEEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 247 -MFCWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 247 -~iivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
.||.||. ..+- ..++++..+.++-.++|..++..-....+.++ ..|++.+.|.-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 5666776 1122 45788888888888898877643322222233 45777777764
No 51
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.08 E-value=1.2e-05 Score=68.80 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCC----CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe
Q 045887 138 KKIVKKVWEDLMGD----KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV 192 (382)
Q Consensus 138 ~~~~~~l~~~l~~~----~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 192 (382)
...++.+..++... ....+.|+|++|+|||+||+.+++.+ ......++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~ 90 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL---AKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH---HTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEh
Confidence 34455556665433 12789999999999999999999983 222334566654
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.08 E-value=0.00012 Score=70.67 Aligned_cols=155 Identities=13% Similarity=0.188 Sum_probs=88.6
Q ss_pred cccCchHHHHHHHHHHhc------------CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHH
Q 045887 132 TSRRNTKKIVKKVWEDLM------------GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 199 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~------------~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 199 (382)
...+|.+..++.|.+.+. ....+-|.++|++|+|||+||+.+++.+ . ..-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~----~~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---N----NSTFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---C----SSEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---C----CCCEEEEeHHH---
Confidence 346788888888877652 1234689999999999999999999872 1 11233333221
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC--------------------------------CCC-
Q 045887 200 KLQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI--------------------------------DNH- 246 (382)
Q Consensus 200 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--------------------------------~~g- 246 (382)
+.... .+.. ... ...+.......++.+|++|++ ..+
T Consensus 204 -l~~~~---~g~~---~~~----~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 -LVSKW---LGES---EKL----VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ------------C---CCT----HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred -HHhhh---cchH---HHH----HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11110 1111 111 122233332236789999988 123
Q ss_pred eEEEecc---------ccCc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHH
Q 045887 247 MFCWGLR---------SMGC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTV 310 (382)
Q Consensus 247 ~iivTtR---------~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 310 (382)
.||.||. .... ..+.++..+.++-..+|...+....... .......|++.+.|. +-.|..+
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 4555665 1122 4568888888888899988764332111 235567899999885 3344443
No 53
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.3e-05 Score=73.20 Aligned_cols=145 Identities=20% Similarity=0.201 Sum_probs=85.7
Q ss_pred cCchHHHHHHHHHHh----cC---------CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDL----MG---------DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l----~~---------~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
..|-++.++.|.+.+ .. ...+-|.++|++|+|||+||+.+++. .... .+.++.+.-
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e---~~~~---fi~vs~s~L----- 279 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR---TDAT---FIRVIGSEL----- 279 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH---HTCE---EEEEEGGGG-----
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc---cCCC---eEEEEhHHh-----
Confidence 446666666665543 21 24578999999999999999999998 2222 233443221
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
.... ....+.....++...+...+++|++|++ ..+
T Consensus 280 ---------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 280 ---------VQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ---------CCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ---------hccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 1110 1122233334444433336788888877 233
Q ss_pred -eEEEecc----------ccCc--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 045887 247 -MFCWGLR----------SMGC--EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 304 (382)
Q Consensus 247 -~iivTtR----------~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 304 (382)
.||.||. ..|- ..++++..+.++-.++|+.++..-......+ ...|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 5566775 2222 5678888899988999987764332222223 345778888764
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.06 E-value=4.7e-05 Score=74.15 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=78.2
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhccc--CCCCceEEEEeCCCCCHHHHHHHHHHHhC
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEET--NEFSDVIWVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
..+||+.+++.+.+.+......-+.++|.+|+|||+||+.+++.+.... ......-++.++-. ....
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----------~~~~ 249 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----------TKYR 249 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----------cccc
Confidence 4789999999999999776666778999999999999999998831110 01111112221111 0000
Q ss_pred CCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------CCC--eEEEecc-cc-------------CceeeecC
Q 045887 211 LSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------DNH--MFCWGLR-SM-------------GCEEVIVP 263 (382)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------~~g--~iivTtR-~~-------------~~~~~~l~ 263 (382)
.. .......+.+.+...++.+|++|.- ..| .+|.+|. .. ....+.++
T Consensus 250 g~------~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~ 323 (468)
T 3pxg_A 250 GE------FEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVD 323 (468)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECC
T ss_pred ch------HHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeC
Confidence 00 0011223333333336788888832 334 5666555 11 12468999
Q ss_pred CCChHHHHHHHHHhhc
Q 045887 264 PLSKEEALNLFLDKVG 279 (382)
Q Consensus 264 ~L~~~ea~~Lf~~~a~ 279 (382)
+++.++..+++...+.
T Consensus 324 ~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 324 QPSVDESIQILQGLRD 339 (468)
T ss_dssp CCCHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 55
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00019 Score=68.59 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=32.6
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|-++.++.|.+.+. . ...+-|.++|++|+|||+||+.+++.
T Consensus 174 igGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 174 VGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4566776666655442 2 23467999999999999999999998
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.04 E-value=7.3e-06 Score=66.51 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=32.1
Q ss_pred cCchHHHHHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+++.
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4566777777776653 123345789999999999999999887
No 57
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.04 E-value=9e-06 Score=68.39 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhcCC---CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 045887 137 TKKIVKKVWEDLMGD---KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSP 213 (382)
Q Consensus 137 r~~~~~~l~~~l~~~---~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 213 (382)
....++.+.+++.+- ....+.|+|++|+|||||++.+++.+.. ...+. +++++ ..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~-~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIR-GYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCC-CCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHhcCch
Confidence 345555555555432 3478999999999999999999988321 22222 33443 3444444444332211
Q ss_pred CCCchHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 214 TKDEDKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 214 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
.. .+.+.+. +.-+||||++
T Consensus 91 ~~---------~~~~~~~--~~~llilDE~ 109 (180)
T 3ec2_A 91 DT---------KFLKTVL--NSPVLVLDDL 109 (180)
T ss_dssp CS---------HHHHHHH--TCSEEEEETC
T ss_pred HH---------HHHHHhc--CCCEEEEeCC
Confidence 10 1222233 4678999998
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.92 E-value=0.00021 Score=73.91 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=82.4
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccC---CCCceEE-EEeCCCCCHHHHHHHHHHH
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETN---EFSDVIW-VTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~---~f~~~~w-v~~~~~~~~~~~~~~i~~~ 208 (382)
.++||+.++..+.+.+......-+.++|.+|+|||++|+.+++.+....- .....+| ++.+.-
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------- 253 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------- 253 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------
Confidence 47899999999999998777777899999999999999999987321110 0122222 111110
Q ss_pred hCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC------------------------C-CC-eEEEecc--c------
Q 045887 209 LKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI------------------------D-NH-MFCWGLR--S------ 254 (382)
Q Consensus 209 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv------------------------~-~g-~iivTtR--~------ 254 (382)
+... ............+.+.+...++.+|++|++ . .+ .+|.+|. .
T Consensus 254 ~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~ 332 (758)
T 1r6b_X 254 LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_dssp -CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCC
T ss_pred hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhh
Confidence 0000 111233444445555555436788889988 1 23 5555554 0
Q ss_pred ------cCceeeecCCCChHHHHHHHHHhh
Q 045887 255 ------MGCEEVIVPPLSKEEALNLFLDKV 278 (382)
Q Consensus 255 ------~~~~~~~l~~L~~~ea~~Lf~~~a 278 (382)
.....+.+++++.++..+++....
T Consensus 333 ~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred cCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 112457899999999988887654
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.87 E-value=0.00081 Score=59.66 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=30.8
Q ss_pred ccCchHHHHHHHHH---HhcCC---------CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWE---DLMGD---------KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~---~l~~~---------~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.+..++.+.+ ++... ..+-+.|+|++|+||||||+.+++.
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35666655555433 33221 2346889999999999999999987
No 60
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=0.00017 Score=66.03 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC
Q 045887 138 KKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLSPTKD 216 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~ 216 (382)
++.++.|...+.+++.+...++|++|+||||+|..+++.+...........+++.+. ..+... .+++...+...+.
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p~-- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSPE-- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCCS--
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhccc--
Confidence 445667777777777789999999999999999999875221222223345565443 333333 2345444432211
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEEEcC-----------------C-CC-eEEEecc-------ccCceeeecCCCChHHH
Q 045887 217 EDKVRRARRLLGKLKVKKKFVLILDYI-----------------D-NH-MFCWGLR-------SMGCEEVIVPPLSKEEA 270 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------------~-~g-~iivTtR-------~~~~~~~~l~~L~~~ea 270 (382)
.+ ++-++|+|++ . +. .+|++|. ......+++.+++.++.
T Consensus 80 --------------~~-~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i 144 (305)
T 2gno_A 80 --------------LY-TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEF 144 (305)
T ss_dssp --------------SS-SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHH
T ss_pred --------------cC-CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHH
Confidence 12 5567777777 2 33 5555543 00011789999999999
Q ss_pred HHHHHHhh
Q 045887 271 LNLFLDKV 278 (382)
Q Consensus 271 ~~Lf~~~a 278 (382)
.+.+.+.+
T Consensus 145 ~~~L~~~~ 152 (305)
T 2gno_A 145 RDLVKEKI 152 (305)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988775
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.82 E-value=0.00022 Score=73.73 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=78.2
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCC--CceEEEEeCCCCCHHHHHHHHHHHhC
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEF--SDVIWVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
..+||+.+++.+...+......-+.++|.+|+|||++|+.+++.+......+ ...-++.++- +
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g 245 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------G 245 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------c
Confidence 4789999999999999876666789999999999999999998842111111 1111222111 0
Q ss_pred CCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-----------CCC--eEEEecc-cc-------------CceeeecC
Q 045887 211 LSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-----------DNH--MFCWGLR-SM-------------GCEEVIVP 263 (382)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-----------~~g--~iivTtR-~~-------------~~~~~~l~ 263 (382)
.... ...+.....+.+.....++.+|++|.- ..| .+|.||. .. ....+.++
T Consensus 246 ~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~ 323 (758)
T 3pxi_A 246 TKYR--GEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVD 323 (758)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECC
T ss_pred cccc--chHHHHHHHHHHHHHhcCCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeC
Confidence 0000 001112222333333337788899843 334 6666665 11 12468999
Q ss_pred CCChHHHHHHHHHhh
Q 045887 264 PLSKEEALNLFLDKV 278 (382)
Q Consensus 264 ~L~~~ea~~Lf~~~a 278 (382)
+++.++..+++....
T Consensus 324 ~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 324 QPSVDESIQILQGLR 338 (758)
T ss_dssp CCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.79 E-value=0.00059 Score=66.59 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=88.1
Q ss_pred cCchHHHHHHHHHHhc-------------CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 134 RRNTKKIVKKVWEDLM-------------GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~-------------~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
.+|.+..+++|.+.+. ....+-|.|+|.+|+|||+||+.+++. .... .+.++++.
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~---~~~~---fv~vn~~~------ 273 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE---TGAF---FFLINGPE------ 273 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH---CSSE---EEEEEHHH------
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH---hCCC---EEEEEchH------
Confidence 6777888888776653 234467999999999999999999887 2221 23443211
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC-------------------------------CCC-eE
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI-------------------------------DNH-MF 248 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv-------------------------------~~g-~i 248 (382)
+...+ . ... ......+.......++.+|+||++ ..+ .|
T Consensus 274 ----l~~~~----~-g~~-~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 ----IMSKL----A-GES-ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHTSC----T-THH-HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----hhhhh----c-chh-HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11110 0 111 122222333333337789999987 123 55
Q ss_pred EEecc----------cc-Cc-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHH
Q 045887 249 CWGLR----------SM-GC-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTV 310 (382)
Q Consensus 249 ivTtR----------~~-~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 310 (382)
|.||. .. .. ..+.++..+.++-.++|...+.......+.. ..+++..+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 65666 11 11 3578999999999999988764332222222 34567777775 4444433
No 63
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.73 E-value=0.002 Score=59.58 Aligned_cols=70 Identities=4% Similarity=-0.028 Sum_probs=45.8
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHhh------hcC--CCChhHHHHHHHHH
Q 045887 259 EVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC------MRG--VDEIHEWRNALNEL 330 (382)
Q Consensus 259 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~~~~------L~~--~~~~~~w~~~l~~l 330 (382)
.+.+++.+.++-.+++.+.+...+. .-..+.+..|++.+.|.|-.+..+... +.+ .-+.+.-..+++.+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 4689999999999999887632221 122467889999999999755433321 222 24556666666665
Q ss_pred h
Q 045887 331 R 331 (382)
Q Consensus 331 ~ 331 (382)
.
T Consensus 251 ~ 251 (334)
T 1in4_A 251 N 251 (334)
T ss_dssp T
T ss_pred C
Confidence 4
No 64
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.71 E-value=0.00036 Score=71.76 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLKV 232 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 232 (382)
++-|.++|++|+|||+||+.+++. ...+ .+.++.+. + . +. . ....+.....+.+....
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e---lg~~---~~~v~~~~------l----~---sk--~-~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE---TGAF---FFLINGPE------I----M---SK--L-AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT---TTCE---EEEEEHHH------H----H---SS--C-TTHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH---hCCe---EEEEEhHH------h----h---cc--c-chHHHHHHHHHHHHHHH
Confidence 467999999999999999999998 3222 33444221 1 1 10 1 11223334444444444
Q ss_pred CCeEEEEEEcC-------------------------------CCC-eEEEecc----------ccC--ceeeecCCCChH
Q 045887 233 KKKFVLILDYI-------------------------------DNH-MFCWGLR----------SMG--CEEVIVPPLSKE 268 (382)
Q Consensus 233 ~kr~LlVlDdv-------------------------------~~g-~iivTtR----------~~~--~~~~~l~~L~~~ 268 (382)
..+++|++|++ ..+ .||.||. ..+ ...++++..+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 47899999988 223 4555665 111 146789999999
Q ss_pred HHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 045887 269 EALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 306 (382)
Q Consensus 269 ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 306 (382)
+-.++|...........+.+ ...|++.+.|.--|
T Consensus 376 ~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp HHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred HHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 88899887653322222222 34577888877533
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.66 E-value=5.2e-05 Score=61.75 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=29.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
.-..++|+|..|+|||||++.+++.+.. ..+ ..++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHHH
Confidence 4578999999999999999999988322 222 256666543
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.62 E-value=0.0016 Score=63.25 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=92.1
Q ss_pred ccCchHHHHHHHHH---HhcCC---------CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 133 SRRNTKKIVKKVWE---DLMGD---------KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 133 ~~~gr~~~~~~l~~---~l~~~---------~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
...|.+..++++.+ .+... ..+-|.|+|++|+|||+||+.+++. .... .+.++.+.-...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~---~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE---ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH---HTCC---EEEEEGGGTTTC--
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH---cCCC---eeeCCHHHHHHH--
Confidence 35666665555443 33321 1345889999999999999999987 2222 234443322110
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHhCCCeEEEEEEcC----------------------------------CCC
Q 045887 201 LQAEIATALKLSPTKDEDKVRRARRLLGKLKVKKKFVLILDYI----------------------------------DNH 246 (382)
Q Consensus 201 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv----------------------------------~~g 246 (382)
...... .....+........+.+|+||++ ..+
T Consensus 89 -------------~~g~~~-~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------FVGVGA-ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------CTTHHH-HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------HhcccH-HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 001111 22222333332226788888887 124
Q ss_pred -eEEEecc----------ccC-c-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH-HHHH--
Q 045887 247 -MFCWGLR----------SMG-C-EEVIVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA-IFTV-- 310 (382)
Q Consensus 247 -~iivTtR----------~~~-~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa-l~~~-- 310 (382)
.||.||. ..+ . ..+.+++.+.++-.++|...+.......... ...+++.+.|..-+ |..+
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCcHHHHHHHHH
Confidence 5566665 111 1 3678888888888888877654332211212 34478888887622 2222
Q ss_pred -Hhh--hcC---CCChhHHHHHHHHHh
Q 045887 311 -VGC--MRG---VDEIHEWRNALNELR 331 (382)
Q Consensus 311 -~~~--L~~---~~~~~~w~~~l~~l~ 331 (382)
+.. .+. .-+.+.+..+++...
T Consensus 231 ~Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 231 EAALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 111 111 145566777776653
No 67
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.60 E-value=7.2e-05 Score=60.36 Aligned_cols=43 Identities=7% Similarity=0.169 Sum_probs=30.2
Q ss_pred cCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++.
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45666666666655432 22345779999999999999999776
No 68
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.59 E-value=0.00038 Score=63.54 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=38.6
Q ss_pred cCchHHHHHHHHHHhcCC---------CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 134 RRNTKKIVKKVWEDLMGD---------KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~---------~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
++|.+..++.+...+... ....+.++|++|+|||++|+.+++.+ ...-...+.++++.
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~---~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL---FDTEEAMIRIDMTE 85 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH---HSCGGGEEEEEGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH---cCCCcceEEeeccc
Confidence 456677766666555421 13579999999999999999999873 22222345566544
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.47 E-value=0.00031 Score=64.29 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=32.3
Q ss_pred cCchHHHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++.
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 45666667766665532 33456789999999999999999886
No 70
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.35 E-value=0.00017 Score=66.17 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhcCC---CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 137 TKKIVKKVWEDLMGD---KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 137 r~~~~~~l~~~l~~~---~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+...++.+.+++... ....+.++|.+|+|||+||..+++.+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344455555666532 24788999999999999999999984
No 71
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.31 E-value=0.0021 Score=59.89 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=53.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-.++.|+|.+|+|||||+..++..... .-..++|++.....+.. .++.++.... ...+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 379999999999999999999887321 11247788877666543 4455554321 1234444444555
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
..+...+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 4444335668999987
No 72
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.27 E-value=0.00021 Score=65.34 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=44.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHh
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTV--SQPLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKLK 231 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 231 (382)
+++.|+|++|+|||+||.+++.. . . ..++|+++ .+..+ .. ..+.+.....+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~--G---~~VlyIs~~~eE~v~-------------~~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-L--G---GKDKYATVRFGEPLS-------------GY---NTDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-H--H---TTSCCEEEEBSCSST-------------TC---BCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-C--C---CCEEEEEecchhhhh-------------hh---hcCHHHHHHHHHHHHh
Confidence 57789999999999999999875 1 1 12456766 33211 00 1344555566666776
Q ss_pred CCCeEEEEEEcC
Q 045887 232 VKKKFVLILDYI 243 (382)
Q Consensus 232 ~~kr~LlVlDdv 243 (382)
. .+ +||+|++
T Consensus 182 ~-~~-LLVIDsI 191 (331)
T 2vhj_A 182 Q-HR-VIVIDSL 191 (331)
T ss_dssp H-CS-EEEEECC
T ss_pred h-CC-EEEEecc
Confidence 6 55 9999998
No 73
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.23 E-value=0.0086 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-+.++|++|+||||||+.++..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999887
No 74
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.0018 Score=56.59 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=52.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccC----CCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCchH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETN----EFSDVIWVTVSQPLDLVKLQAEIATALKLSPT---------KDEDK 219 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 219 (382)
-.++.|+|.+|+|||||+..++... .... .-..++|++....++...+ ..+++.++.... ...+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 3699999999999999999998741 1111 1346788887665444433 234444443210 01122
Q ss_pred H---HHHHHHHHHHhCCCeEEEEEEcC
Q 045887 220 V---RRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 220 ~---~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
. .....+.+.+...+.-+||+|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 2 22334555554337889999987
No 75
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.22 E-value=0.0018 Score=55.62 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=49.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCC------------CCCCCchHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKL------------SPTKDEDKV 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------------~~~~~~~~~ 220 (382)
-.++.|+|.+|+|||||+..++.. . -..++|++.....+...+.. +.+.++. .........
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~---~---~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLL---S---GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH---H---CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH---c---CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 369999999999999999999762 1 13577888766555544432 3333221 111112223
Q ss_pred HHHHHHHHHHhCCCeEEEEEEcC
Q 045887 221 RRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 221 ~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
.....+...+.. +.-+||+|.+
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~ 114 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECC
T ss_pred HHHHHHHHHhhc-CCCEEEEcCc
Confidence 334444444433 5789999986
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.16 E-value=0.00064 Score=70.26 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=39.9
Q ss_pred cCchHHHHHHHHHHhcC-------C--CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 134 RRNTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-------~--~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
.+|.+..++.+...+.. + ....+.++|++|+|||++|+.+++.+ ...-...+.++++.
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSE 559 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGG
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechh
Confidence 67888888777766641 1 12369999999999999999999883 22222345666543
No 77
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.16 E-value=0.0017 Score=59.95 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=55.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcc---cCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCchHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEE---TNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT---------KDEDKV 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 220 (382)
-.++.|+|.+|+||||||..++...... ...-..++|++....++...+. ++++.++.... ...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 3699999999999999999998762111 0002357899888776666554 34455544210 111222
Q ss_pred ---HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 221 ---RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 221 ---~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
+....+...+.. .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 334455555543 36789999987
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.14 E-value=0.018 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-+.|+|++|+|||||++.+++.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999987
No 79
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.13 E-value=0.031 Score=53.51 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..++|.++|.+|+||||++..++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998874
No 80
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.11 E-value=0.0031 Score=58.57 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=55.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccC----CCCceEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETN----EFSDVIWVTVSQPLDLVKLQAEIATALKLSP------------TKD 216 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 216 (382)
-.++.|+|.+|+||||||..++... .... .-..++|++....++...+.. ++..++... ...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 4799999999999999999988761 1111 123578998877766665543 344444321 111
Q ss_pred chHHHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 217 EDKVRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
....+....+...+.. .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 2222334444455543 36779999987
No 81
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.07 E-value=0.026 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998774
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.05 E-value=0.003 Score=65.58 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=32.0
Q ss_pred cCchHHHHHHHHHHhc----C---------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~----~---------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.+..+++|.+++. . .....|.|+|.+|+||||||+.+++.
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4566666666655542 1 23467999999999999999999887
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.05 E-value=0.0019 Score=55.93 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
.+++|.|.+|+|||||++.++....... ..++|+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc
Confidence 6899999999999999999986632211 2366666443
No 84
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.0023 Score=58.85 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=55.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcc----------c-CCC--CceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEE----------T-NEF--SDVIWVTVSQPLDLVKLQAEIATALKLSPT----- 214 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~----------~-~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----- 214 (382)
-.++.|+|.+|+|||+||..++...... . +.. ..++|++....++...+.+ +++.++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 4799999999999999999987651100 0 111 3578998887766666553 3455544210
Q ss_pred ----CCchHH---HHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 215 ----KDEDKV---RRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 215 ----~~~~~~---~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
...+.+ +....+...+.. .+.-+||+|.+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 111222 334445555554 46779999987
No 85
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.00 E-value=0.0023 Score=59.60 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=52.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-.++.|+|.+|+||||||.+++..... .-..++|++.....+.. .++.++.... ...+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 478999999999999999999876321 12357899887766543 2445553211 1123444444333
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
......+.-+||+|.+
T Consensus 133 ~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHTTTCCSEEEEECG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 3333335679999987
No 86
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.99 E-value=0.001 Score=60.51 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++.+.++|++|+|||+||+.+++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999998
No 87
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.97 E-value=0.0027 Score=59.52 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=53.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-.++.|+|.+|+||||||..++..... .-..++|++....++.. .++.++.... ...+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 368999999999999999999877321 12358899987766543 2444544211 1224445555554
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
......+.-+||+|.+
T Consensus 146 ~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHTTTCCSEEEEECT
T ss_pred HHHhcCCCCEEEEeCh
Confidence 4444435669999987
No 88
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.95 E-value=0.034 Score=52.96 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...++.++|.+|+||||++..++..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998873
No 89
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.88 E-value=0.0045 Score=56.35 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=53.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CchHHHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK-----DEDKVRRARRLLG 228 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 228 (382)
.++-|+|.+|+|||||+.+++..... ...-..++|++....++.. .+++++..... ..+.++....+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999998777321 1112357899887776653 36667654321 1234443123333
Q ss_pred HH---hCCCeEEEEEEcC
Q 045887 229 KL---KVKKKFVLILDYI 243 (382)
Q Consensus 229 ~l---~~~kr~LlVlDdv 243 (382)
.+ ...+.-|+|+|-+
T Consensus 103 ~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHTCCTTCCEEEEEECS
T ss_pred HHHHhhccCceEEEEecc
Confidence 33 4447889999987
No 90
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.87 E-value=0.012 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-+.|+|++|+|||||++.++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999987
No 91
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.84 E-value=0.0084 Score=59.30 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=30.4
Q ss_pred cCchHHHHHHHHHHhc------CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM------GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~------~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|-++..+.+.+.+. ......+.++|++|+||||||+.++..
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4555555555433321 124568999999999999999999887
No 92
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.82 E-value=0.0028 Score=59.13 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=50.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++.... +..+..+....+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 468999999999999999999877321 12358899987766543 2344544211 1123333333333
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
......+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 3333325669999987
No 93
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.79 E-value=0.0017 Score=55.40 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhcC---CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 137 TKKIVKKVWEDLMG---DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 137 r~~~~~~l~~~l~~---~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
|++.++.|.+.+.. ....+|+|.|..|+|||||++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55667777777654 34579999999999999999999876
No 94
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.78 E-value=0.0079 Score=51.90 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=30.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhc--ccC-CCCceEEEEeCCCCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQE--ETN-EFSDVIWVTVSQPLD 197 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~--~~~-~f~~~~wv~~~~~~~ 197 (382)
-.+++|+|++|+|||||++.++..... -.. .-...+|+.......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 369999999999999999999764110 011 123477887554333
No 95
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.73 E-value=0.024 Score=55.20 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=31.1
Q ss_pred cccCchHHHHHHHH---HHhcCC---------CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 132 TSRRNTKKIVKKVW---EDLMGD---------KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 132 ~~~~gr~~~~~~l~---~~l~~~---------~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|.+..+.++. ..+.+. -.+-+.|+|++|+||||||+.+++.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34667666555544 333321 1234899999999999999999987
No 96
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.65 E-value=0.0066 Score=58.70 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=33.9
Q ss_pred cccCchHHHHHHH---HHHhcCC--CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 132 TSRRNTKKIVKKV---WEDLMGD--KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 132 ~~~~gr~~~~~~l---~~~l~~~--~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.+..++.+ ++.+..+ ..+-+.++|++|+|||+||+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 4477888776654 3444443 2357899999999999999999998
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.61 E-value=0.0022 Score=54.89 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcC--CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 139 KIVKKVWEDLMG--DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 139 ~~~~~l~~~l~~--~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+++|.+.+.. ....+|+|+|..|+|||||++.+...+
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666666653 356799999999999999999998773
No 98
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.59 E-value=0.012 Score=55.60 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=52.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhc---ccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCc---
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQE---ETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT---------KDE--- 217 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~--- 217 (382)
-.++.|+|.+|+|||||+..++-.... ....-..++|++....++...+ ..+++.++.... ...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 369999999999999999977533110 1112345788887665555443 335555554211 011
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 218 DKVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 218 ~~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
...+....+...+...+.-+||+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 12233334444444436789999986
No 99
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.57 E-value=0.0092 Score=54.16 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=46.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIATALKLSPTKDEDKVRRARRLLGKL 230 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 230 (382)
...+++++|.+|+||||++..++..+.. .... .+..+.... .....+.+.......+.......+.......+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh
Confidence 3579999999999999999999877321 1221 345555432 222333344444444433221223333333332 33
Q ss_pred hCCCeEEEEEEc
Q 045887 231 KVKKKFVLILDY 242 (382)
Q Consensus 231 ~~~kr~LlVlDd 242 (382)
. +.=++|+|-
T Consensus 181 -~-~~dlvIiDT 190 (296)
T 2px0_A 181 -S-EYDHVFVDT 190 (296)
T ss_dssp -G-GSSEEEEEC
T ss_pred -c-CCCEEEEeC
Confidence 3 455788883
No 100
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.56 E-value=0.013 Score=60.33 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.2
Q ss_pred cCchHHHHHHHHHHhcC---------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG---------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~---------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.+..++.+...+.. .....+.++|++|+|||++|+.+++.
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 66777777777665531 12347999999999999999999988
No 101
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.54 E-value=0.00086 Score=62.70 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=34.1
Q ss_pred HHHHhc-CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC
Q 045887 144 VWEDLM-GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 196 (382)
Q Consensus 144 l~~~l~-~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 196 (382)
.++.+. -..-..++|+|.+|+|||||++.+.+........+. ++++-+++..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 344443 234579999999999999999999876322223343 3456667654
No 102
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.46 E-value=0.018 Score=52.67 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=35.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
-.++.|.|.+|+||||||..++.... ... ..++|++... +..++...+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a--~~g-~~vl~~slE~--s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS--DND-DVVNLHSLEM--GKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH--TTT-CEEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH--HcC-CeEEEEECCC--CHHHHHHHHHH
Confidence 36899999999999999999987632 122 4677887653 45555555544
No 103
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.46 E-value=0.021 Score=54.52 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+|.++|.+|+||||++..++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999998774
No 104
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.44 E-value=0.0016 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999877
No 105
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.42 E-value=0.0023 Score=58.12 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=33.5
Q ss_pred cCchHHHHHHHHHHhcC--------------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG--------------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~--------------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.+..++.+...+.. .....+.++|.+|+|||++|+.+++.
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56777777777665533 23457889999999999999999987
No 106
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.41 E-value=0.036 Score=53.48 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=33.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 206 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 206 (382)
-.++.|.|.+|+|||||+..++...... . -..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-T-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-S-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-C-CCcEEEEECCC--CHHHHHHHHH
Confidence 3689999999999999999998873221 1 12477777543 3445555443
No 107
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.012 Score=51.21 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=28.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
-.++.|.|.+|+|||||+..++..... .-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 368999999999999999888766322 123577887554
No 108
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.38 E-value=0.017 Score=52.62 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH--HHHHHHHHHHhCCCC---CCCchHHHH-HHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL--VKLQAEIATALKLSP---TKDEDKVRR-ARR 225 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~-~~~ 225 (382)
...+++|+|.+|+||||++..++..+.. .. ..+.++... .+.. .+-+...++.++... ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g-~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--EG-KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--TT-CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--cC-CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3579999999999999999999887422 11 224455433 2222 222334455544321 111222222 233
Q ss_pred HHHHHhCCCeEEEEEEcC
Q 045887 226 LLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 226 l~~~l~~~kr~LlVlDdv 243 (382)
+...+.. +.-++|+|-.
T Consensus 179 l~~a~~~-~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALAR-NKDVVIIDTA 195 (306)
T ss_dssp HHHHHHT-TCSEEEEEEC
T ss_pred HHHHHhc-CCCEEEEECC
Confidence 4444544 5558888854
No 109
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.38 E-value=0.0046 Score=54.99 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=30.8
Q ss_pred cCchHHHHHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|.+..+..+.+.+. ......|.|+|.+|+|||+||+.+++.
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 5666666666655443 122356789999999999999999887
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.37 E-value=0.0018 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999887
No 111
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.37 E-value=0.0018 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 54
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.31 E-value=0.0016 Score=56.49 Aligned_cols=85 Identities=13% Similarity=-0.064 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPTK--DEDKVRRARRLLGKL 230 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 230 (382)
-.++.++|..|+||||++..+++++.. ... .++.+....... ....+++.++..... ..+..+....+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~--~g~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY--ADV-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--TTC-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh--cCC-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 468999999999999999998887321 222 244444333211 112344445443221 112233333333333
Q ss_pred hCCCeEEEEEEcC
Q 045887 231 KVKKKFVLILDYI 243 (382)
Q Consensus 231 ~~~kr~LlVlDdv 243 (382)
..++.-+||+|.+
T Consensus 86 ~~~~~dvViIDEa 98 (223)
T 2b8t_A 86 FNDETKVIGIDEV 98 (223)
T ss_dssp SCTTCCEEEECSG
T ss_pred hCCCCCEEEEecC
Confidence 3323459999987
No 113
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.30 E-value=0.06 Score=51.69 Aligned_cols=52 Identities=15% Similarity=0.035 Sum_probs=36.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA 208 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 208 (382)
-.++.|.|.+|+||||||..++..... ..-..++|++... +..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCC--CHHHHHHHHHHH
Confidence 368999999999999999999887321 1122477777643 455666665543
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.27 E-value=0.0026 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+++|+|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999775
No 115
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.20 E-value=0.0028 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHh
Q 045887 154 TKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999977
No 116
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.20 E-value=0.027 Score=52.33 Aligned_cols=91 Identities=23% Similarity=0.342 Sum_probs=50.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchh-c-ccCCCCc-eEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQ-E-ETNEFSD-VIWVTVSQPLDLVKLQAEIATALKLSP------------TKD 216 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~-~-~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 216 (382)
.-.++.|+|.+|+|||||+..++.... . ....... ++|++....+....+ ..+.+.++... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 347999999999999999999987621 0 0111123 488887655433332 33444333211 001
Q ss_pred chHHHHHHHHHHHHhC-----CCeEEEEEEcC
Q 045887 217 EDKVRRARRLLGKLKV-----KKKFVLILDYI 243 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~-----~kr~LlVlDdv 243 (382)
....+....+...+.. .+.-+||+|.+
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 1122333334444432 36889999987
No 117
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.20 E-value=0.0023 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|+|+|++|+|||||++.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999886
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.19 E-value=0.0028 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.|+|++|+||||+++.++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999887
No 119
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.18 E-value=0.011 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 379999999999999999998743
No 120
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.18 E-value=0.015 Score=53.68 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=34.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
.++.|.|.+|+||||||..++..... .=..++|++.. .+..++...++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 68999999999999999999887322 22346677654 345566666544
No 121
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.18 E-value=0.0069 Score=62.32 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=30.5
Q ss_pred CchHHHHHHHHHHhcC-------------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 135 RNTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 135 ~gr~~~~~~l~~~l~~-------------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.++..+.|.+.+.- ...+-+.++|++|+|||.||+.+++.
T Consensus 480 ggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 4556666666554421 12356889999999999999999998
No 122
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.17 E-value=0.0047 Score=53.31 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 142 KKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 142 ~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.+...+.......|+|+|.+|+|||||+..+...
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444444456789999999999999999999877
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.16 E-value=0.0027 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+.|.|+|++|+||||+|+.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.13 E-value=0.0035 Score=53.26 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.5
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.....+|+|+|++|+|||||++.++..+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999998873
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.11 E-value=0.074 Score=48.87 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
....+++|+|+.|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998873
No 126
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.11 E-value=0.046 Score=49.51 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=49.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC-CCHHHHHHHHHHHhCCCC---CCCchHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIATALKLSP---TKDEDKVRRARRLLG 228 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 228 (382)
..+++++|.+|+||||++..++..+.. .. ..+.++..... ....+.+.......+... ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CC-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 579999999999999999999887422 11 23556654432 222333444455554421 112344455445555
Q ss_pred HHhCCCeEEEEEEc
Q 045887 229 KLKVKKKFVLILDY 242 (382)
Q Consensus 229 ~l~~~kr~LlVlDd 242 (382)
.+....-=++|+|-
T Consensus 175 ~~~~~~~D~ViIDT 188 (297)
T 1j8m_F 175 KFLSEKMEIIIVDT 188 (297)
T ss_dssp HHHHTTCSEEEEEC
T ss_pred HHHhCCCCEEEEeC
Confidence 55421333777775
No 127
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.10 E-value=0.0033 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|.|.|++|+||||+|+.+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998874
No 128
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.10 E-value=0.0056 Score=64.06 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=33.8
Q ss_pred cCchHHHHHHHHHHhcC-------C--CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 134 RRNTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-------~--~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|.+..++.+...+.. . ....+.|+|++|+|||++|+.+++.+
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 57778777777666532 1 12578999999999999999998873
No 129
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.09 E-value=0.0033 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999876
No 130
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.07 E-value=0.0035 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....+|+|.|+.|+|||||++.++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999887
No 131
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.004 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+|.|.|++|+||||+++.++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998873
No 132
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.05 E-value=0.0043 Score=53.31 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 140 IVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 140 ~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+.+...+.....++|+|+|.+|+|||||+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344444444456789999999999999999999877
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.02 E-value=0.0029 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 134
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.02 E-value=0.017 Score=55.52 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=50.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHHHHHhC--------CCCCCCchHHH---
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIATALK--------LSPTKDEDKVR--- 221 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~--- 221 (382)
..++|+|.+|+|||||+..+.... .. ..-+..+++-+++.. ...++..++...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468999999999999999998772 11 122345666666654 34455555543200 01111111111
Q ss_pred -HHHHHHHHHhC--CCeEEEEEEcC
Q 045887 222 -RARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 222 -~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
....+.+++.. ++++||++||+
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11233344432 49999999999
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.00 E-value=0.0043 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 136
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.00 E-value=0.03 Score=53.97 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=58.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCC-HHHHHHHHHHHhCCC--------------CCCC
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD-LVKLQAEIATALKLS--------------PTKD 216 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~--------------~~~~ 216 (382)
.-..++|+|.+|+|||+|+..+.+.. ...+-+.++++-+++... ..++.+++...-... ..+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 44789999999999999999998872 223456778888887654 566777776541111 0111
Q ss_pred ch-----HHHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 217 ED-----KVRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 217 ~~-----~~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
.. .......+-+++++ ++.+||++||+
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 11223344456655 69999999999
No 137
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.98 E-value=0.0086 Score=55.46 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHHHh----cCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 138 KKIVKKVWEDL----MGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 138 ~~~~~~l~~~l----~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+...+.+++.+ ..+....|.|+|++|+||||+++.++..
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44455555554 3455677999999999999999988776
No 138
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.96 E-value=0.051 Score=52.15 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=56.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCC-HHHHHHHHHHHhCCC-------------CCCCc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD-LVKLQAEIATALKLS-------------PTKDE 217 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------------~~~~~ 217 (382)
.-..++|+|.+|+|||+|+..+.+.. ...+-+.++++-+++... ..++.+++...-... ..+..
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p 229 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCC
Confidence 34789999999999999999998872 123345567777777543 566777776542211 11111
Q ss_pred hH-----HHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 218 DK-----VRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 218 ~~-----~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
.. ......+-++++. ++.+||++||+
T Consensus 230 ~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 1122233344443 59999999998
No 139
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.94 E-value=0.0042 Score=51.03 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999887
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.93 E-value=0.0042 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|.|.|++|+||||+++.+...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998873
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.91 E-value=0.0046 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|+|++|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 142
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.91 E-value=0.0055 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+...+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999664
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.91 E-value=0.0043 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999999875
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.91 E-value=0.0035 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++|.|.|++|+||||+++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999877
No 145
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.91 E-value=0.0044 Score=56.75 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
++.+||+|.|-|||||||.+..++--+.+... .+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk---kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK---RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC---eEEEEecCC
Confidence 46799999999999999999998777433222 255566553
No 146
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.91 E-value=0.0044 Score=57.31 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=33.5
Q ss_pred cccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 132 TSRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 132 ~~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..++|.+..+..+...+......-+.|+|.+|+|||+||+.+++.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3477877766655444433333459999999999999999999873
No 147
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.90 E-value=0.003 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+-+.++|++|+|||+||+.+++.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999987
No 148
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.90 E-value=0.0095 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.069 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
....+|+|.|..|+||||||+.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998774
No 149
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.90 E-value=0.0056 Score=51.26 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999776
No 150
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.89 E-value=0.0048 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHh
Q 045887 154 TKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 151
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.88 E-value=0.017 Score=64.80 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=54.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRL 226 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 226 (382)
..++|.|+|++|+|||+||.+++.. ....=..++|+++....+... ++.++.+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e---a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA---AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH---HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH---HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 4579999999999999999999887 222223477888877666554 445553211 112233444445
Q ss_pred HHHHhCCCeEEEEEEcC
Q 045887 227 LGKLKVKKKFVLILDYI 243 (382)
Q Consensus 227 ~~~l~~~kr~LlVlDdv 243 (382)
....+..+.-+||+|.+
T Consensus 1498 ~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHTCCSEEEESCG
T ss_pred HHHHhcCCCCEEEEcCh
Confidence 54544447889999988
No 152
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.87 E-value=0.0084 Score=50.64 Aligned_cols=88 Identities=16% Similarity=-0.004 Sum_probs=46.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC---CCCHHHHHHHHH---HHhCCCC-CCCc-------h
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ---PLDLVKLQAEIA---TALKLSP-TKDE-------D 218 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~---~~l~~~~-~~~~-------~ 218 (382)
-..|.|++-.|.||||+|...+-+. ....+ .+.++.+-. ......++..+. ...+... .... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA--~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA--VGHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH--HHTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HHCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 3567777777899999999888773 22333 355555433 233444444431 0001100 0111 1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEcC
Q 045887 219 KVRRARRLLGKLKVKKKFVLILDYI 243 (382)
Q Consensus 219 ~~~~~~~l~~~l~~~kr~LlVlDdv 243 (382)
.......+.+.+..++-=|||||++
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi 129 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDEL 129 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 1223344455555534559999998
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.85 E-value=0.0051 Score=51.62 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|.|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999753
No 154
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.84 E-value=0.0051 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|++|+||||+|+.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 155
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.84 E-value=0.0039 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|.|.|++|+||||+|+.++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999887
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.83 E-value=0.0056 Score=52.40 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999887
No 157
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.83 E-value=0.0055 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|+.|+||||+++.+++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 158
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.83 E-value=0.0057 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999876
No 159
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.82 E-value=0.005 Score=52.09 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999887
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.80 E-value=0.0053 Score=51.29 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 161
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.80 E-value=0.0043 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999886
No 162
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.79 E-value=0.0048 Score=54.65 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999877
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.79 E-value=0.0045 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++++|.|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999876
No 164
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.79 E-value=0.0051 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 165
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.78 E-value=0.047 Score=53.32 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
-.++.|.|.+|+||||||.+++.... ..+=..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccC--CHHHHHHHHHH
Confidence 36899999999999999999988731 11123577887654 45566666544
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.75 E-value=0.0055 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999877
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.73 E-value=0.0056 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|++|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 168
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.72 E-value=0.0052 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999877
No 169
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.72 E-value=0.036 Score=50.19 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=47.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCC-HHHHHHHHHHHhCCCCC---CCchHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD-LVKLQAEIATALKLSPT---KDEDKVRRARRLL 227 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 227 (382)
...+++++|.+|+||||++..++..+.. . . ..+.++....... ....+..+....+...- ...+..+......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-~-~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-K-G-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-T-T-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-c-C-CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999999999887322 1 1 2244554432211 11223344444443211 1223444433333
Q ss_pred HHH-hCCCeEEEEEEcC
Q 045887 228 GKL-KVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l-~~~kr~LlVlDdv 243 (382)
..+ .. +.=++|+|--
T Consensus 174 ~~~~~~-~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLE-ARDLILVDTA 189 (295)
T ss_dssp HHHHHH-TCCEEEEECC
T ss_pred HHHHhC-CCCEEEEeCC
Confidence 443 23 4557788853
No 170
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.71 E-value=0.0056 Score=56.35 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=34.7
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|++..++.+...+..+ .-+.++|.+|+|||+||+.+++.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHH
Confidence 3677888888887776554 46889999999999999999887
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.71 E-value=0.0061 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHh
Q 045887 154 TKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 172
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.70 E-value=0.0053 Score=50.81 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHIN 174 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~ 174 (382)
-.+++|+|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999754
No 173
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.70 E-value=0.0058 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999776
No 174
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.70 E-value=0.0074 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|+|++|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999776
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.68 E-value=0.0064 Score=50.70 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|++.|++|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0065 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 177
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.67 E-value=0.01 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.|.|++|+||||+|+.+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999876
No 178
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.65 E-value=0.0054 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999887
No 179
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.64 E-value=0.011 Score=55.10 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=32.0
Q ss_pred cCchHHHHHHHHHHhc-------------C--CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLM-------------G--DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~-------------~--~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.+..++.+...+. . .....+.++|++|+|||++|+.+++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566666666665551 1 13467899999999999999999987
No 180
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.63 E-value=0.0069 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999886
No 181
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.62 E-value=0.0047 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999776
No 182
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.60 E-value=0.0078 Score=51.02 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|.|++|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999887
No 183
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.59 E-value=0.11 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..++|+|+|.+|+||||++..++..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998774
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.59 E-value=0.007 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|+|++|+|||||++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999865
No 185
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.58 E-value=0.0067 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|.|.|++|+||||+|+.+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998873
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.57 E-value=0.0061 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999775
No 187
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.57 E-value=0.0069 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.|.|++|+||||+|+.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 188
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.55 E-value=0.0045 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=17.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.51 E-value=0.0078 Score=49.25 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 190
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.51 E-value=0.0078 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887
No 191
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.49 E-value=0.0084 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..++++|.|..|+|||||+..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998873
No 192
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.46 E-value=0.0086 Score=51.03 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998873
No 193
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.46 E-value=0.018 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhch
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998874
No 194
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.45 E-value=0.0097 Score=58.08 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=34.3
Q ss_pred cCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.+..++.+...+..+ .-|.++|++|+|||+||+.+++.
T Consensus 24 ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHH
Confidence 678888888877766544 46889999999999999999987
No 195
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.45 E-value=0.0081 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.381 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.|.|++|+||||+|+.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 196
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.43 E-value=0.014 Score=51.24 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.43 E-value=0.0084 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999999876
No 198
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.41 E-value=0.0089 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++|.|.|++|+||||.|+.++++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999887
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.40 E-value=0.0092 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.168 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998873
No 200
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.38 E-value=0.0096 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999876
No 201
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.38 E-value=0.069 Score=51.51 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHhcCCCCccccccccccccccCchHHHHHH
Q 045887 64 RTEVKNWLQNLQRINSKAQSIEQEVKKRKYFLCARLGKDVDAKIQEMKDCHQKGCSFISLWIDIVNNNTSRRNTKKIVKK 143 (382)
Q Consensus 64 ~~~v~~Wl~~l~~~~y~~ed~~d~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~ 143 (382)
...+..|..++.++.-.+|-.+|--+.-....+-.+..++..+.++++++.... ...+
T Consensus 162 ~~~~~~~r~~l~~~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~----------------------~~~~ 219 (462)
T 3geh_A 162 AHPIRQLRANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATK----------------------DKGE 219 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTH----------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHh----------------------hhhh
Confidence 556888888888887777776653221112223345566666666666554320 0011
Q ss_pred HHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 144 VWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 144 l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.. . ++. .|+|+|.+|+|||||...+...
T Consensus 220 ~~---r-~~~-kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 220 LL---R-TGL-KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HH---H-HCE-EEEEEECTTSSHHHHHHHHHHH
T ss_pred hh---c-CCC-EEEEEcCCCCCHHHHHHHHhCC
Confidence 11 1 123 4899999999999999998765
No 202
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.37 E-value=0.033 Score=48.53 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=31.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 205 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 205 (382)
-.++.|.|.+|+|||+||.+++.+. ....-..++|++... +...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~--~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG--AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH--HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HHhcCCCceeecccC--CHHHHHHHH
Confidence 3689999999999999999876541 111122466666544 344444443
No 203
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.35 E-value=0.0099 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|+.|+||||+++.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999775
No 204
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.35 E-value=0.013 Score=51.72 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.+.|++|+||||+|+.+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999887
No 205
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.34 E-value=0.0088 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.|.|++|+||||+++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999887
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.34 E-value=0.0097 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999876
No 207
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.33 E-value=0.011 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|..|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999775
No 208
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.33 E-value=0.017 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+.++|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999987
No 209
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.33 E-value=0.058 Score=51.35 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....+|.|+|++|+||||+|+.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999999876
No 210
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.32 E-value=0.0099 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.147 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.28 E-value=0.0093 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 212
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.25 E-value=0.009 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 213
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.24 E-value=0.012 Score=48.13 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-.+++|.|+.|.|||||++.++.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34469999999999999999999886
No 214
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.21 E-value=0.078 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+++|+|.+|+||||++..++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998874
No 215
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.20 E-value=0.2 Score=45.98 Aligned_cols=148 Identities=9% Similarity=0.015 Sum_probs=79.1
Q ss_pred HHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHH-hCC-------CCCCC-
Q 045887 146 EDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATA-LKL-------SPTKD- 216 (382)
Q Consensus 146 ~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~-------~~~~~- 216 (382)
+.+.+.-.++..++|..|.||++.+..+.+.+. ...|+....+.+....++.++...+... +.. ...+.
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 334323457999999999999999999988631 2234322222334445555554443211 111 00000
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEEEcCCCC-eEEEec-c--------------ccCceeeecCCCChHHHHHHHHHhhcC
Q 045887 217 EDKVRRARRLLGKLKVKKKFVLILDYIDNH-MFCWGL-R--------------SMGCEEVIVPPLSKEEALNLFLDKVGR 280 (382)
Q Consensus 217 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~g-~iivTt-R--------------~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 280 (382)
.+ ......+.+.+... .++ .+|++| . ...+..++..+++.++....+...+-.
T Consensus 89 l~-~~~~~aLl~~le~p----------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 89 PN-AAINEQLLTLTGLL----------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp CC-TTHHHHHHHHHTTC----------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred CC-hHHHHHHHHHHhcC----------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 00 11222233333320 123 333332 1 223467789999999988887776533
Q ss_pred CCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 045887 281 NILHVPTLNEEIINSVVEECAGLQLAIFT 309 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~i~~~c~glPLal~~ 309 (382)
.+.. -..+.+..+++.++|.+..+..
T Consensus 158 ~g~~---i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 158 LNLE---LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTCE---ECHHHHHHHHHSSTTCHHHHHH
T ss_pred cCCC---CCHHHHHHHHHHhchHHHHHHH
Confidence 3211 1245677888888988877655
No 216
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.20 E-value=0.014 Score=49.74 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCC-CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 140 IVKKVWEDLMGD-KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 140 ~~~~l~~~l~~~-~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-+..+..++.+- ....+.++|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555532 2347999999999999999999887
No 217
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.19 E-value=0.01 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999876
No 218
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.18 E-value=0.011 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|+.|+||||+++.++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3469999999999999999999855
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.16 E-value=0.013 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+++|+|++|+|||||++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999877
No 220
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.16 E-value=0.012 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|..|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999999876
No 221
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.14 E-value=0.0068 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|+|.|+.|+||||+++.+...+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998774
No 222
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.14 E-value=0.013 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 223
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.12 E-value=0.018 Score=52.25 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
....++|+|+|-||+||||+|..++..+.+. .. .++-|+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~-~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GK-RVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TC-CEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CC-eEEEEeCCC
Confidence 3467899999999999999999998875332 22 356666553
No 224
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.12 E-value=0.0052 Score=57.43 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHhcC-CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCC
Q 045887 143 KVWEDLMG-DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 195 (382)
Q Consensus 143 ~l~~~l~~-~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 195 (382)
++++.+.. ..-..++|+|.+|+|||+|+..+++........+. ++++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 44555543 34578999999999999999999887322223333 345666654
No 225
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.09 E-value=0.026 Score=52.56 Aligned_cols=36 Identities=17% Similarity=0.483 Sum_probs=27.9
Q ss_pred HHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 141 VKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 141 ~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+++.+. .++..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 334444443 456789999999999999999999876
No 226
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.08 E-value=0.015 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHIN 174 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~ 174 (382)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 227
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.08 E-value=0.012 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999999876
No 228
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.04 E-value=0.049 Score=61.18 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-.++.|+|.+|+||||||.+++.... ..-..++|++.....+... ++.++.... +..+..+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 47999999999999999999988732 2223578988777665432 555654321 1234455554444
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
......+.-++|+|.+
T Consensus 455 ~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSV 470 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHHhcCCcEEEECCH
Confidence 4443336679999987
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.02 E-value=0.018 Score=49.25 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
....+|.|.|+.|+||||+++.+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998873
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.01 E-value=0.016 Score=49.79 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999965
No 231
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.98 E-value=0.012 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+++|+|..|+|||||++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998873
No 232
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.94 E-value=0.073 Score=51.11 Aligned_cols=49 Identities=10% Similarity=-0.032 Sum_probs=33.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 206 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 206 (382)
-.++.|.|.+|+||||||..++..... . -..++|++... +..++...++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHH
Confidence 368999999999999999999887322 2 12467776543 3334444443
No 233
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.94 E-value=0.012 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+|+|+|+.|+||||+++.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999886
No 234
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.93 E-value=0.017 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|..|+|||||++.+...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998766
No 235
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.92 E-value=0.013 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|.|.|++|+||||+|+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999887
No 236
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.92 E-value=0.05 Score=52.52 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=51.9
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHHhchhcccCCCCc-eEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIM-RHINNRPQEETNEFSD-VIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDKVR 221 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~ 221 (382)
.-..++|+|.+|+|||+|| ..+.+. . +-+. .+++-+++.. ...++.+.+...-.. ...+......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~---~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ---K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG---G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh---h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 3468899999999999996 477666 2 2342 4677777754 355666666553211 1111111111
Q ss_pred -----HHHHHHHHHhC-CCeEEEEEEcC
Q 045887 222 -----RARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 222 -----~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
....+-+++.. ++.+||++||+
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11233444443 59999999999
No 237
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.91 E-value=0.05 Score=52.55 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=51.9
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHHhchhcccCCCCc-eEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIM-RHINNRPQEETNEFSD-VIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDKVR 221 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~ 221 (382)
.-..++|+|.+|+|||+|| ..+++. . .-+. .+++-+++.. ...++.+.+...=.. ...+......
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~---~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQ---K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTT---T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHh---h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 3468999999999999996 467666 2 2343 4677777754 355666666542111 1111111111
Q ss_pred -----HHHHHHHHHhC-CCeEEEEEEcC
Q 045887 222 -----RARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 222 -----~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
....+-+++.. ++.+||++||+
T Consensus 249 ~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 12233444443 59999999999
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.89 E-value=0.01 Score=49.15 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++++|+|..|+|||||++.+...
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 239
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.88 E-value=0.0096 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=16.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHH-hc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHIN-NR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~-~~ 176 (382)
-.+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998 54
No 240
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.85 E-value=0.016 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|+|.|+.|+||||+++.+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999886
No 241
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.84 E-value=0.015 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999765
No 242
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.84 E-value=0.039 Score=49.76 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=32.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 206 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 206 (382)
-.+++|.|.+|+|||||++.++.......+ ..++|+.... +..++...+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEeCcC--CHHHHHHHHH
Confidence 369999999999999999999887321111 1356665433 3334444433
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.81 E-value=0.017 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999999999999765
No 244
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.80 E-value=0.045 Score=60.59 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=54.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-+++.|+|.+|+||||||.+++..... .-..++|++.....+.. .++.++.... +..+.++....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 479999999999999999999887322 22358899887766653 2455554321 1223444444444
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
......+.-++|+|.+
T Consensus 455 ~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHhcCCCEEEECCH
Confidence 4443336679999988
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.79 E-value=0.018 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999887
No 246
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.78 E-value=0.039 Score=51.20 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=25.3
Q ss_pred hcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 148 LMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 148 l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+.+...+++.+.|.||+||||+|..++..+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 345567899999999999999999988774
No 247
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.77 E-value=1.1 Score=41.45 Aligned_cols=26 Identities=12% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....|+++|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999776
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.77 E-value=0.019 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+++|+|+.|+||||+++.++..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998873
No 249
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.76 E-value=0.054 Score=46.47 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=34.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
..|.+-|+.|+||||+++.+.+.+. ...+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999998842 234433444433333334556666654
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.75 E-value=0.015 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999664
No 251
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.74 E-value=0.029 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++.|+|.+|+|||||+..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 69999999999999999999865
No 252
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.73 E-value=0.054 Score=47.25 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 206 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 206 (382)
...|.|.|+.|+||||+++.+.+.+. ..++..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 36899999999999999999998842 24455344443222222334444444
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.73 E-value=0.016 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 254
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.73 E-value=0.036 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...|+|.|+.|+||||+++.+.+.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.72 E-value=0.019 Score=47.64 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.++++|.|..|+|||||+..+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999998773
No 256
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.71 E-value=0.038 Score=55.33 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=35.6
Q ss_pred ccCchHHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.+..++.+...+..+ ..+.|+|++|+||||||+.++..
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHT
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhcc
Confidence 3678888888877777665 58999999999999999999887
No 257
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.71 E-value=0.021 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|..|+|||||++.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999876
No 258
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.71 E-value=0.018 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.|.|++|+||||+|+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999887
No 259
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.67 E-value=0.019 Score=52.76 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.++|.|+|+.|+|||||+..++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999999883
No 260
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.63 E-value=0.021 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999876
No 261
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.63 E-value=0.048 Score=50.29 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=25.0
Q ss_pred hcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 148 LMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 148 l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
+.+...+++.+.|.||+||||+|..++..+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 345557888999999999999999998774
No 262
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.63 E-value=0.022 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|.++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999776
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.63 E-value=0.018 Score=49.19 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|.|.|++|+||||.|+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999887
No 264
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.62 E-value=0.014 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.61 E-value=0.018 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|++|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 266
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.56 E-value=0.019 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|.|+|+.|+||||||..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999887
No 267
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.56 E-value=0.02 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.+|+|.|+.|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998873
No 268
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.54 E-value=0.069 Score=50.96 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=53.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhccc-CCCC-ceEEEEeCCCC-CHHHHHHHHHHH--hCC-----CCCCCchHH--
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEET-NEFS-DVIWVTVSQPL-DLVKLQAEIATA--LKL-----SPTKDEDKV-- 220 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~-- 220 (382)
-..++|+|.+|+|||+|+.++++. .... ++-+ .++++-+++.. ...++.+.+... +.. ...+.....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~-~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQ-ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHH-CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHH-HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 356889999999999999999887 3221 1111 45666666643 455666665543 111 111111111
Q ss_pred ---HHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 221 ---RRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 221 ---~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
.....+.++++. ++.+||++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 122344556652 59999999999
No 269
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.53 E-value=0.022 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.++|.|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998873
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.53 E-value=0.018 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999764
No 271
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.52 E-value=0.086 Score=44.55 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=32.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 155 KIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
.|+|=|.-|+||||.++.+++.+.. ...+ +++..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~--~g~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK--RGKK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCc-EEEEECCCCCcHHHHHHHHhh
Confidence 4788899999999999999988422 2222 444443333344555555554
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.52 E-value=0.019 Score=50.31 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999776
No 273
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.49 E-value=0.14 Score=59.29 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=37.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALK 210 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 210 (382)
+-|.++|++|+|||++|+.+... . ..+ ..+.++++...+...++..+-..+.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~---~-~~~-~~~~infsa~ts~~~~~~~i~~~~~ 1319 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN---S-SLY-DVVGINFSKDTTTEHILSALHRHTN 1319 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS---C-SSC-EEEEEECCTTCCHHHHHHHHHHHBC
T ss_pred CeEEEECCCCCCHHHHHHHHHhc---C-CCC-ceEEEEeecCCCHHHHHHHHHHHhh
Confidence 57889999999999999887665 2 222 3456788877777776666655543
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.48 E-value=0.019 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||++.++.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999654
No 275
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.049 Score=45.10 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 141 VKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 141 ~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+..+.+ +.......|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 44455678999999999999999999854
No 276
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.45 E-value=0.041 Score=48.72 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
++|+|.|-||+||||+|..++..+.+ ... .++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~--~G~-~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA--MGK-TIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT--TTC-CEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH--CCC-cEEEEcCCC
Confidence 67888999999999999999888432 222 356666543
No 277
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.45 E-value=0.025 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999775
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.45 E-value=0.02 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999764
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.44 E-value=0.019 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999654
No 280
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.44 E-value=0.012 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999876
No 281
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.43 E-value=0.022 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|..|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999873
No 282
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.41 E-value=0.023 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999774
No 283
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.40 E-value=0.025 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+++|+|+.|+||||+++.++..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999998873
No 284
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.38 E-value=0.025 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++.+.|.||+||||++..++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 578899999999999999999876
No 285
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.36 E-value=0.018 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999765
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.36 E-value=0.021 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|.|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999764
No 287
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.36 E-value=0.025 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+-|.++|++|+||||+|+.++..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999999887
No 288
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.36 E-value=0.021 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 368999999999999999999765
No 289
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.35 E-value=0.023 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.345 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|..|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 290
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.35 E-value=0.037 Score=53.98 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=36.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCC-HHHHHHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD-LVKLQAEI 205 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 205 (382)
.-..++|.|..|+|||+|+..+++. .+-+.++++-+++..+ ..++++.+
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~-----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW-----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH-----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 3468999999999999999998775 2234677888887654 45555554
No 291
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.35 E-value=0.029 Score=47.51 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 141 VKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 141 ~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+.+.+.......-.|+++|.+|+|||||...+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 333333334445567899999999999999988765
No 292
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.35 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.+..-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 369999999999999999999765
No 293
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.32 E-value=0.022 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999776
No 294
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.30 E-value=0.028 Score=46.27 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=26.3
Q ss_pred HHHHHHhcC-CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 142 KKVWEDLMG-DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 142 ~~l~~~l~~-~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++.+.+.. .....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344444444 45678999999999999999988743
No 295
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.29 E-value=0.02 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999774
No 296
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.29 E-value=0.063 Score=51.89 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=48.8
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHHhchhcccCCCCc-eEEEEeCCCCC-HHHHHHHHHHHh--CC-----CCCCC-----c
Q 045887 153 VTKIGVWGMGGIGKTAIM-RHINNRPQEETNEFSD-VIWVTVSQPLD-LVKLQAEIATAL--KL-----SPTKD-----E 217 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l--~~-----~~~~~-----~ 217 (382)
-..++|+|.+|+|||+|| ..+++. .. -+. .+++-+++..+ ..++.+.+...= .. ...+. .
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~---~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ---QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC---CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh---hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 367899999999999996 577776 22 342 46777777543 445555554321 00 11111 1
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEEEcC
Q 045887 218 DKVRRARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 218 ~~~~~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
-.......+-+++.. ++.+||++||+
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111122223333332 49999999998
No 297
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.28 E-value=0.023 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999654
No 298
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.27 E-value=0.022 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|..|+|||||.+.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999665
No 299
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.26 E-value=0.029 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..++|.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3478999999999999999999887
No 300
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.26 E-value=0.022 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999765
No 301
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.26 E-value=0.081 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..|.+-|+.|+||||+++.+.+.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998884
No 302
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.25 E-value=0.065 Score=46.32 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=34.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
.....|.+.|+.|+||||+++.+.+.+.. ...+.......-.......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~-~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE-IYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh-ccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 34578999999999999999999988422 023443331222222234455555554
No 303
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.24 E-value=0.044 Score=52.30 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=53.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhccc--------CCCC-ceEEEEeCCCC-CHHHHHHHHHHH--hCC-----CCCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEET--------NEFS-DVIWVTVSQPL-DLVKLQAEIATA--LKL-----SPTK 215 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~ 215 (382)
-..++|+|.+|+|||+|+.++++. .... ++-+ .++++-+++.. ...++.+.+... +.. ...+
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~-~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQ-ATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHH-CBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CCEEEEecCCCCCchHHHHHHHHH-HHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 467889999999999999999887 3321 1112 45666666643 355666665442 110 1111
Q ss_pred CchH-----HHHHHHHHHHHhC--CCeEEEEEEcC
Q 045887 216 DEDK-----VRRARRLLGKLKV--KKKFVLILDYI 243 (382)
Q Consensus 216 ~~~~-----~~~~~~l~~~l~~--~kr~LlVlDdv 243 (382)
.... ......+.++++. ++.+||++||+
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 1222344556552 59999999999
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.24 E-value=0.027 Score=47.37 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 305
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.24 E-value=0.037 Score=45.80 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998765
No 306
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.23 E-value=0.081 Score=51.14 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=52.9
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHHhchhcc----cCCCC-ceEEEEeCCCCC-HHHHHHHHHHHhCC-------CCCCCc
Q 045887 152 KVTKIGVWGMGGIGKTAIM-RHINNRPQEE----TNEFS-DVIWVTVSQPLD-LVKLQAEIATALKL-------SPTKDE 217 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa-~~v~~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~ 217 (382)
.-..++|+|.+|+|||+|| ..+.+. ... .++-+ .++++-+++..+ ..++.+.+...=.. ...+..
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q-~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQ-KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHT-HHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH-HhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 4468899999999999995 567666 221 12234 366777777543 55666666542111 111111
Q ss_pred hHHH-----HHHHHHHHHhC-CCeEEEEEEcC
Q 045887 218 DKVR-----RARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 218 ~~~~-----~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
.... ....+-+++.. ++.+||++||+
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1111 12233344443 59999999999
No 307
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.056 Score=44.90 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999776
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.21 E-value=0.029 Score=45.02 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999765
No 309
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.18 E-value=0.041 Score=48.86 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-.+++|+|+.|+|||||++.+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34479999999999999999998775
No 310
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.16 E-value=0.024 Score=49.97 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999765
No 311
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.13 E-value=0.025 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|..|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999765
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.13 E-value=0.025 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999765
No 313
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.10 E-value=0.043 Score=49.28 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=28.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
.++|+|.|-||+||||+|..++..+... .+ .++-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~-rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GK-KVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TC-CEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CC-eEEEEecCC
Confidence 4688889999999999999998885322 22 355666543
No 314
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.10 E-value=0.025 Score=50.38 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|..|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999664
No 315
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.08 E-value=0.04 Score=47.60 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCC
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 194 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 194 (382)
-.|.+.|.||+||||+|..++..+ ....++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l--~~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ--LRQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HHTTCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH--HHCCCC-EEEEEeCC
Confidence 358889999999999999998884 223343 44555544
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.07 E-value=0.026 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999765
No 317
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.06 E-value=0.026 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999765
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.05 E-value=0.031 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+.|.|.|..|+||||||..++.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999887
No 319
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.04 E-value=0.033 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 320
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.00 E-value=0.087 Score=58.39 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=58.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHH
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIATALKLSPT-----KDEDKVRRARRLL 227 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 227 (382)
-++|-|+|+.|+||||||.++... .+..=...+|+.+....++.- ++.++.... +..+.++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~---~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAA---AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH---HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH---HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 379999999999999999999866 333334578998877766553 677766432 1223355555556
Q ss_pred HHHhCCCeEEEEEEcC
Q 045887 228 GKLKVKKKFVLILDYI 243 (382)
Q Consensus 228 ~~l~~~kr~LlVlDdv 243 (382)
..++.+..-++|+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6666657779999988
No 321
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.98 E-value=0.035 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 322
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.97 E-value=0.064 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+..+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999865
No 323
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.97 E-value=0.032 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999775
No 324
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.96 E-value=0.041 Score=45.81 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999776
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.95 E-value=0.031 Score=50.75 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.+++|+|+.|.|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4479999999999999999999765
No 326
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.91 E-value=0.036 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+++|+|.+|+|||||++.++..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 469999999999999999999877
No 327
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.91 E-value=0.034 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 328
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.86 E-value=0.085 Score=50.83 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=50.9
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHHhchhcccCCCC-ceEEEEeCCCCC-HHHHHHHHHHHhCC-------CCCCCchHHH
Q 045887 152 KVTKIGVWGMGGIGKTAIM-RHINNRPQEETNEFS-DVIWVTVSQPLD-LVKLQAEIATALKL-------SPTKDEDKVR 221 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~ 221 (382)
.-..++|+|..|+|||+|+ ..+.+. . +-+ .++++-+++..+ ..++.+.+...=.. ...+......
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~---~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ---R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT---S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh---c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 4468899999999999996 566665 2 233 356787887643 55666665543111 1111111111
Q ss_pred -----HHHHHHHHHhC-CCeEEEEEEcC
Q 045887 222 -----RARRLLGKLKV-KKKFVLILDYI 243 (382)
Q Consensus 222 -----~~~~l~~~l~~-~kr~LlVlDdv 243 (382)
....+-+++++ ++.+||++||+
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 11222333332 49999999999
No 329
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.84 E-value=0.064 Score=46.64 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=27.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCC
Q 045887 156 IGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD 197 (382)
Q Consensus 156 v~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 197 (382)
|+|.|-||+||||+|..++..+.+. . ..++-|+.....+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~--g-~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD--Y-DKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT--C-SCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC--C-CeEEEEeCCCCcC
Confidence 6679999999999999999884322 2 3466676655433
No 330
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.82 E-value=0.068 Score=47.39 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCC-C-ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 139 KIVKKVWEDLMGD-K-VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 139 ~~~~~l~~~l~~~-~-~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....-+..|+... . -..+.++|++|+|||.+|..+++.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3344566777654 2 457999999999999999999885
No 331
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.82 E-value=0.038 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...|+|.|..|+||||+++.+++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998873
No 332
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.81 E-value=0.09 Score=50.66 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 138 KKIVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 138 ~~~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...+..+...+.+++ +.+.|.|.+|+|||+++..+...+
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445566666666544 489999999999999999998874
No 333
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.81 E-value=0.038 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 334
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.79 E-value=0.035 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999866
No 335
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.78 E-value=0.044 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999999765
No 336
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.77 E-value=0.046 Score=44.63 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999765
No 337
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.74 E-value=0.038 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-|+++|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999765
No 338
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.73 E-value=0.053 Score=45.61 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHhc-CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 144 VWEDLM-GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 144 l~~~l~-~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+++.+. ......|+++|.+|+|||||...+.+.
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344442 233456899999999999999998754
No 339
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.71 E-value=0.045 Score=46.63 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....|.++|.+|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999876
No 340
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.68 E-value=0.041 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999775
No 341
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.65 E-value=0.046 Score=51.25 Aligned_cols=26 Identities=19% Similarity=-0.010 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....+++|+|++|+|||||++.++..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34579999999999999999999875
No 342
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.65 E-value=0.034 Score=49.42 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999765
No 343
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.64 E-value=0.04 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999999764
No 344
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.63 E-value=0.034 Score=44.84 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-|+++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999998654
No 345
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.63 E-value=0.034 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|+|.|..|+|||||++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999988654
No 346
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.61 E-value=0.041 Score=44.31 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-|+++|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999765
No 347
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.61 E-value=0.04 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998765
No 348
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.59 E-value=0.065 Score=51.37 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=53.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhchhcccCC--CCceEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCchH---
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRPQEETNE--FSDVIWVTVSQPL-DLVKLQAEIATALKL-------SPTKDEDK--- 219 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~--- 219 (382)
-..++|+|.+|+|||+|+.++++. ....+. =+.++++-+++.. ...++.+.+...-.. ...+....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~-~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQ-ASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHH-CBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-HhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 467888999999999999999887 322111 1345666666644 456666666653111 11111111
Q ss_pred --HHHHHHHHHHHh--CCCeEEEEEEcC
Q 045887 220 --VRRARRLLGKLK--VKKKFVLILDYI 243 (382)
Q Consensus 220 --~~~~~~l~~~l~--~~kr~LlVlDdv 243 (382)
......+.++++ .++.+||++||+
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 112233445554 259999999998
No 349
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.59 E-value=0.039 Score=50.51 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999865
No 350
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.58 E-value=0.5 Score=44.02 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.8
Q ss_pred cCchHHHHHHHHHH---hcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWED---LMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~---l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++|....+.++... +.... ..|.|+|.+|+||+++|+.+.+.
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~~-~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKSK-APVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTSC-SCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccchHHHHHHhhhhhhhccc-hhheEEeCCCchHHHHHHHHHHh
Confidence 45544444444333 33333 34668999999999999999776
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.57 E-value=0.042 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-|+++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998765
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.57 E-value=0.042 Score=44.15 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.|+++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998765
No 353
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.042 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999765
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.53 E-value=0.042 Score=44.36 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+++|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999876
No 355
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.52 E-value=0.056 Score=44.80 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999876
No 356
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.50 E-value=0.054 Score=53.04 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHhcC-CCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCC-CHHHHHHHH
Q 045887 145 WEDLMG-DKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEI 205 (382)
Q Consensus 145 ~~~l~~-~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 205 (382)
++.|.. ..-..++|.|..|+|||+|+..+++. . +-+.++++-+++.. ...++++++
T Consensus 223 ID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~---~--~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 223 IDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKW---S--DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHH---S--SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhccCCccCCCEEeeecCCCccHHHHHHHHHhc---c--CCCEEEEEEecccHHHHHHHHHHH
Confidence 444432 34478999999999999999999886 1 23467777777653 344444443
No 357
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.49 E-value=0.046 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998776
No 358
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.48 E-value=0.047 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 359
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.48 E-value=0.046 Score=45.71 Aligned_cols=23 Identities=17% Similarity=-0.048 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.++.++|+.|+||||++..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999777766
No 360
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.47 E-value=0.062 Score=45.23 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=29.5
Q ss_pred eEEEEE-eCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCH
Q 045887 154 TKIGVW-GMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 198 (382)
Q Consensus 154 ~vv~I~-G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 198 (382)
++|+|+ +-||+||||+|..++..+.. .. ..++.++.....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~--~g-~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR--SG-YNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH--TT-CCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH--CC-CeEEEEECCCCCCH
Confidence 678887 66999999999999888533 22 23667776655443
No 361
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.46 E-value=0.041 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|..|+|||||.+.++.-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999765
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.44 E-value=0.17 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|.|.+|+|||||++.++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 369999999999999999999876
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.44 E-value=0.044 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999887765
No 364
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.43 E-value=0.044 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhch
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
++|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998873
No 365
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.42 E-value=0.045 Score=44.79 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999998765
No 366
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.41 E-value=0.16 Score=43.21 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
..|+|=|..|+||||+++.+++.+ ...++ +++..-.......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L---~~~~~-v~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL---VKDYD-VIMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TTTSC-EEEEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH---HCCCC-EEEeeCCCCChHHHHHHHHHh
Confidence 468899999999999999999984 23443 333332222234445555543
No 367
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.40 E-value=0.045 Score=45.22 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999999776
No 368
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.39 E-value=0.45 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999865
No 369
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.36 E-value=0.047 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999765
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.35 E-value=0.055 Score=43.70 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+|+|.+|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999998643
No 371
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.34 E-value=0.049 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 372
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.32 E-value=0.11 Score=48.51 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHh------------cCCCceEEEEEe-CCCCcHHHHHHHHHhchhcccCCCCceEEEEeC
Q 045887 137 TKKIVKKVWEDL------------MGDKVTKIGVWG-MGGIGKTAIMRHINNRPQEETNEFSDVIWVTVS 193 (382)
Q Consensus 137 r~~~~~~l~~~l------------~~~~~~vv~I~G-~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 193 (382)
-+..+.++.+.. .....++|+|+| -||+||||+|..++..+... . ..++.+++.
T Consensus 115 ~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g-~rVlliD~D 181 (373)
T 3fkq_A 115 VDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM--G-KKVFYLNIE 181 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--T-CCEEEEECC
T ss_pred HHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhC--C-CCEEEEECC
Confidence 456666666554 123568999986 89999999999998875332 1 236777766
No 373
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.32 E-value=0.049 Score=44.45 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 374
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.31 E-value=0.047 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 457899999999999999988765
No 375
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.31 E-value=0.053 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+.+|+|..|+|||||+..++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999998664
No 376
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.30 E-value=0.034 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..+|.|+|.+|+||||++..++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998874
No 377
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.28 E-value=0.048 Score=43.82 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-|+++|.+|+|||||...+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998754
No 378
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.27 E-value=0.047 Score=50.72 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999764
No 379
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.24 E-value=0.051 Score=43.83 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 380
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.23 E-value=0.083 Score=47.92 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 141 VKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 141 ~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+++|.+.+.. .+++++|+.|+|||||.+.+. .
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-S
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-H
Confidence 4555555542 589999999999999999998 6
No 381
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.21 E-value=0.054 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999765
No 382
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.17 E-value=0.052 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999876
No 383
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.17 E-value=0.049 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 368999999999999999999664
No 384
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.17 E-value=0.056 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.|+|+|.+|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 385
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.16 E-value=0.043 Score=45.91 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.4
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
......|+|+|.+|+|||||...+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 344567999999999999999998654
No 386
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.16 E-value=0.052 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999877665
No 387
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.13 E-value=0.052 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999876
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.13 E-value=0.053 Score=44.58 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999865
No 389
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.13 E-value=0.034 Score=49.24 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|.|..|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999877
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.12 E-value=0.054 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999765
No 391
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.12 E-value=0.041 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 392
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.12 E-value=0.051 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 368999999999999999999764
No 393
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.12 E-value=0.034 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 468999999999999999998664
No 394
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.09 E-value=0.051 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 368999999999999999999764
No 395
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.09 E-value=0.058 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999855
No 396
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.07 E-value=0.044 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999765
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.06 E-value=0.065 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..--|+|+|.+|+|||||+..+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457899999999999999998765
No 398
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.05 E-value=0.052 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999999764
No 399
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.05 E-value=0.06 Score=44.42 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....|+++|.+|+|||||...+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999876
No 400
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.01 E-value=0.041 Score=54.94 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=32.1
Q ss_pred ccCchHHHHHHHHHHhcCCCce-----------EEEEEeCCCCcHHHHHHHHHhc
Q 045887 133 SRRNTKKIVKKVWEDLMGDKVT-----------KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 133 ~~~gr~~~~~~l~~~l~~~~~~-----------vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+|.+.....+.-.+..+..+ -|.++|.+|+|||+||+.+++.
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 3667777666665444443211 5889999999999999999877
No 401
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.00 E-value=0.049 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999776
No 402
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.99 E-value=0.057 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||+..+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999865
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.99 E-value=0.057 Score=44.36 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
--|+++|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998765
No 404
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.98 E-value=0.054 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 68999999999999999999764
No 405
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.96 E-value=0.056 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998775
No 406
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.96 E-value=0.06 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|.++|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999987775
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.94 E-value=0.059 Score=44.27 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 357899999999999999999865
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.93 E-value=0.059 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998765
No 409
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.92 E-value=0.055 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 368999999999999999999754
No 410
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.92 E-value=0.083 Score=45.77 Aligned_cols=25 Identities=28% Similarity=0.338 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...|.|-|+.|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999884
No 411
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.88 E-value=0.037 Score=46.77 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.....|+|+|.+|+|||||.+.+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334568999999999999999988765
No 412
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.88 E-value=0.058 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 413
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.87 E-value=0.063 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999776
No 414
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.87 E-value=0.061 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-|.|+|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998765
No 415
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.86 E-value=0.067 Score=45.39 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+|+|.|+.|+||||+++.+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 416
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.82 E-value=0.065 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999766
No 417
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.82 E-value=0.15 Score=43.42 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=29.5
Q ss_pred EEEEE-eCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHH
Q 045887 155 KIGVW-GMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVK 200 (382)
Q Consensus 155 vv~I~-G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 200 (382)
+|+|+ +-||+||||+|..++..+.. .. .++-++.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~--~g--~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLAL--QG--ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHT--TS--CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHh--cC--CEEEEECCCCCCHHH
Confidence 56664 67999999999999988432 22 577777776554433
No 418
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.82 E-value=0.078 Score=48.93 Aligned_cols=26 Identities=19% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....+++|+|.+|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999765
No 419
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.81 E-value=0.061 Score=45.09 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998765
No 420
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.81 E-value=0.076 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 359999999999999999998776
No 421
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.80 E-value=0.058 Score=50.34 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...++|+|..|+|||||++.++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999776
No 422
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.80 E-value=0.046 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 368999999999999999999765
No 423
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.79 E-value=0.066 Score=44.96 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||+..+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4467899999999999999999876
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.78 E-value=0.066 Score=45.22 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||+..+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998765
No 425
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.78 E-value=0.064 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|+++|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998765
No 426
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.76 E-value=0.062 Score=45.14 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998765
No 427
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.75 E-value=0.057 Score=46.83 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...++|.|++|+||||+|+.+.+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999887
No 428
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.74 E-value=0.092 Score=51.16 Aligned_cols=41 Identities=10% Similarity=-0.054 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhc--CCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 137 TKKIVKKVWEDLM--GDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 137 r~~~~~~l~~~l~--~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
|.+..+.+.+... .....+|.+.|+.|+||||+|+.++..+
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3444444445442 2245789999999999999999999984
No 429
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.74 E-value=0.048 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHh
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
....|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999999853
No 430
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.73 E-value=0.064 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.++|++|.||||+|+.++..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999877
No 431
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.72 E-value=0.067 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.+++|+|..|+|||||.+.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4479999999999999999999887
No 432
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.72 E-value=0.19 Score=46.66 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhchh
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRPQ 178 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~~ 178 (382)
.+...++...|.||+||||+|..++..+.
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 33456777789999999999999887743
No 433
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.71 E-value=0.064 Score=44.65 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999876
No 434
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.063 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 356899999999999999998765
No 435
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.68 E-value=0.077 Score=45.66 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999765
No 436
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.65 E-value=0.067 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999776
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.61 E-value=0.067 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999865
No 438
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.61 E-value=0.069 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 439
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.61 E-value=0.098 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-.+++|+|+.|+|||||++.+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34578999999999999999999776
No 440
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.60 E-value=0.18 Score=47.96 Aligned_cols=27 Identities=22% Similarity=0.068 Sum_probs=23.4
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...-.+++|+|+.|+|||||.+.+...
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 345579999999999999999998776
No 441
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.58 E-value=0.07 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999876
No 442
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.58 E-value=0.17 Score=46.50 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=22.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
++...++.+.|.||+||||+|..++..+
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3445677788999999999999988774
No 443
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.57 E-value=0.07 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999766
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.57 E-value=0.09 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 150 GDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 150 ~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..+..+|+|+|.+|+|||||+..+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345689999999999999999999765
No 445
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.56 E-value=0.07 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 368999999999999999999764
No 446
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.52 E-value=0.17 Score=43.75 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=27.1
Q ss_pred CceEEEEEe-CCCCcHHHHHHHHHhchhcccCCCCceEEEEeC
Q 045887 152 KVTKIGVWG-MGGIGKTAIMRHINNRPQEETNEFSDVIWVTVS 193 (382)
Q Consensus 152 ~~~vv~I~G-~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 193 (382)
..++|+|+| -||+||||+|..++..+... .. ..++.|+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~-~g-~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE-PD-IHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS-TT-CCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC-cC-CCEEEEECC
Confidence 457888875 58999999999998884322 01 235566654
No 447
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.52 E-value=0.043 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-.+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999754
No 448
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.51 E-value=0.072 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999875
No 449
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.50 E-value=0.072 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..--|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998765
No 450
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.47 E-value=0.071 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999765
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.46 E-value=0.072 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998765
No 452
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.46 E-value=0.094 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999999873
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.44 E-value=0.076 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 457899999999999999999764
No 454
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.44 E-value=0.07 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998765
No 455
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.43 E-value=0.062 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHh
Q 045887 155 KIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~ 175 (382)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999765
No 456
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.40 E-value=0.08 Score=47.96 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999875
No 457
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.40 E-value=0.08 Score=44.56 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999765
No 458
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.39 E-value=0.074 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999999765
No 459
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.39 E-value=0.071 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999765
No 460
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.38 E-value=0.076 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|+|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999776
No 461
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.36 E-value=0.076 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998765
No 462
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.36 E-value=0.088 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4578999999999999999999876
No 463
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.35 E-value=0.077 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999998765
No 464
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.32 E-value=0.11 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|+|++|+||+|+|..+.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 4579999999999999999998664
No 465
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.30 E-value=0.1 Score=51.43 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
.-.+++|+|+.|+|||||++.++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34789999999999999999998873
No 466
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.28 E-value=0.82 Score=42.81 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=27.5
Q ss_pred CchHHHHHHHHHH---hcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 135 RNTKKIVKKVWED---LMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 135 ~gr~~~~~~l~~~---l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
+|....+.++.+. +...+.+ |.|.|.+|+|||++|+.+...
T Consensus 140 ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 140 VFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 3333444444433 3344444 489999999999999999776
No 467
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.26 E-value=0.085 Score=43.86 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-|+++|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999865
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.26 E-value=0.079 Score=45.08 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999765
No 469
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.24 E-value=0.097 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999765
No 470
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.24 E-value=0.15 Score=45.07 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=31.0
Q ss_pred CCCceEEEEE-eCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHH
Q 045887 150 GDKVTKIGVW-GMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 199 (382)
Q Consensus 150 ~~~~~vv~I~-G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 199 (382)
....++|+|+ |-||+||||+|..++..+. .. ..++-|+.....+..
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la---~g-~~VlliD~D~~~~~~ 70 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS---KN-NKVLLIDMDTQASIT 70 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT---TT-SCEEEEEECTTCHHH
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH---CC-CCEEEEECCCCCCHH
Confidence 3456788885 5689999999999998843 22 346777776554433
No 471
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.22 E-value=0.073 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|..|.|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999876
No 472
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.22 E-value=0.085 Score=44.53 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999765
No 473
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.20 E-value=0.13 Score=46.55 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 141 VKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 141 ~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
++++.+.+.. .+++|+|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhccc
Confidence 4555555543 58999999999999999999765
No 474
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.18 E-value=0.79 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
-..++|+|..|.|||||++.+...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 368999999999999999999765
No 475
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.16 E-value=0.088 Score=44.28 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||+..+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3467899999999999999998765
No 476
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.15 E-value=0.089 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||+..+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998765
No 477
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.10 E-value=0.082 Score=45.20 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHh
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINN 175 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~ 175 (382)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35699999999999999999874
No 478
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.08 E-value=0.092 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999875
No 479
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.07 E-value=0.19 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999765
No 480
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.05 E-value=0.084 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|.++|++|+||||+++.+++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 481
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.00 E-value=0.071 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.518 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999765
No 482
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.079 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-.+++|+|..|+|||||++.++.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3478999999999999999999876
No 483
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.99 E-value=0.18 Score=46.12 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
..++...|.||+||||+|..++..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Confidence 3577778999999999999998774
No 484
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.95 E-value=0.2 Score=47.96 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=32.2
Q ss_pred cCchHHHHHHHHHHhcC-----------CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 134 RRNTKKIVKKVWEDLMG-----------DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 134 ~~gr~~~~~~l~~~l~~-----------~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..|.++.++.+.+.+.. .+...|+|+|.+|+|||||...+...
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 34567777777666531 12358999999999999999999776
No 485
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.95 E-value=0.091 Score=44.32 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998765
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.94 E-value=0.11 Score=42.93 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.-|.|.|.+|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57899999999999999999765
No 487
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.90 E-value=0.068 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999776
No 488
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.87 E-value=0.091 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|.+|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58999999999999999999876
No 489
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.85 E-value=0.25 Score=42.34 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhch
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNRP 177 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~~ 177 (382)
...|.+-|+.|+||||+++.+.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999984
No 490
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.84 E-value=0.67 Score=46.63 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCcHHHHHHHHHhchhcccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 045887 140 IVKKVWEDLMGDKVTKIGVWGMGGIGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAT 207 (382)
Q Consensus 140 ~~~~l~~~l~~~~~~vv~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 207 (382)
..+.+...|... .+..|+|++|.|||+.+.++...+ .... ..+.++...+..+.+++..+..
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l--~~~~--~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQA--VKQG--LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHH--HHTT--CCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHH--HhCC--CeEEEEcCchHHHHHHHHHHHh
Confidence 344455555443 477899999999997655554442 2222 3577776666666777666643
No 491
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.83 E-value=0.071 Score=45.47 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.....|+|+|..|+|||||...+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999876
No 492
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.80 E-value=0.097 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998765
No 493
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.72 E-value=0.078 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHhc
Q 045887 154 TKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 154 ~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.+++|+|..|.|||||++.+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999876
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.67 E-value=0.11 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999998765
No 495
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.65 E-value=0.056 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=10.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988654
No 496
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.60 E-value=0.13 Score=45.24 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999765
No 497
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.59 E-value=0.18 Score=48.83 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhc
Q 045887 155 KIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 155 vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.|+|+|.+|+|||||...+...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998765
No 498
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.58 E-value=0.13 Score=44.42 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 152 KVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 152 ~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
...+|+|.|+.|+||||+|+.++..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~ 37 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEE 37 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999887
No 499
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.56 E-value=0.11 Score=49.80 Aligned_cols=26 Identities=15% Similarity=0.503 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 151 DKVTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 151 ~~~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
..-.+++|+|..|+|||||++.++..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34579999999999999999999887
No 500
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.55 E-value=0.1 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHhc
Q 045887 153 VTKIGVWGMGGIGKTAIMRHINNR 176 (382)
Q Consensus 153 ~~vv~I~G~gGvGKTtLa~~v~~~ 176 (382)
.--|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998765
Done!