BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045888
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 29/259 (11%)
Query: 1 GRYIKENPSIDRNDLGFEYLEAKAASSLAPFLDRNVDSKQLIDFSPY------QTESITS 54
GR I N S+D ND G ++EA+ + L+ + V+ ++L + P + E
Sbjct: 79 GR-INVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNED 137
Query: 55 PLLPIQCNMFVCGGMVIGLCISHRIVNATVLHKFSDEWAKASR----IGIHRVDNIELSF 110
L ++ + F CGG IG+ +SH+I + L F + W R I + D F
Sbjct: 138 VPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDLAARHF 197
Query: 111 SLAMLLPTREMVPESMYVLPLKPGLKTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQF 170
P+ E+VP+ V+ K FVF + I +L A + ++ S +Q
Sbjct: 198 PPVDNTPSPELVPDENVVM----------KRFVFDKEKIGALRAQASSASEEKNFSRVQL 247
Query: 171 VTTVIWKAL------KHGKLRPSLIAHMLNLRGRTLLPISDDCCGNPIKPIFIRFFQEMS 224
V IWK + K+G ++ +NLR R P+ GN +F E
Sbjct: 248 VVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWD 307
Query: 225 KNIQLQDLVSLVGDATTKT 243
K+ DL+ + + KT
Sbjct: 308 KD--FPDLIGPLRTSLEKT 324
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 10 IDRNDLGFEYLEAKAASSLAPFLD--RNVDSKQLIDFSPYQTESITSPLLPIQCNMFVCG 67
I+ N G ++EA++ + F D ++ ++LI Y + LL +Q F CG
Sbjct: 89 IECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCG 148
Query: 68 GMVIGLCISHRIVNATVLHKFSDEWAKASR 97
G+ +G+ + H + F + W+ +R
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 10 IDRNDLGFEYLEAKAASSLAPFLD--RNVDSKQLIDFSPYQTESITSPLLPIQCNMFVCG 67
I+ N G ++EA++ + F D ++ ++LI Y + LL +Q F CG
Sbjct: 86 IECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCG 145
Query: 68 GMVIGLCISHRIVNATVLHKFSDEWAKASR 97
G+ +G+ + H + F + W+ +R
Sbjct: 146 GVSLGVGMRHHAADGFSGLHFINSWSDMAR 175
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 34 RNVDSKQLIDFSPYQTES------ITSPLLPIQCNMFVCGGMVIGLCISHRIVNATVLHK 87
RN D + D P ES I PL +Q +F G+ IG+ H + +A+
Sbjct: 123 RNCD--KFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFC 180
Query: 88 FSDEWAKASRIG 99
F W +R G
Sbjct: 181 FLKAWTSIARSG 192
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 34 RNVDSKQLIDFSPYQTES------ITSPLLPIQCNMFVCGGMVIGLCISHRIVNATVLHK 87
RN D + D P ES I PL +Q +F G+ IG+ H + +A+
Sbjct: 123 RNCD--KFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFC 180
Query: 88 FSDEWAKASRIG 99
F W +R G
Sbjct: 181 FLKAWTSIARSG 192
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 69 MVIGLCISHRIVNATVLHK-FSDEWAKASRIGIHRVDNIELSFSLAMLLPTREMVPESMY 127
+V GL ++ + A ++ +++ WA+ S + ++L + L+PT+ V +
Sbjct: 347 LVSGLTVTKGLRGANATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAVAQH-- 404
Query: 128 VLPLKPGLKTASK-TFVF---YRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGK 183
K K+A+ T++F R+ I W AD+ + G F T + ++A +
Sbjct: 405 ----KSHAKSANTYTYLFSQPSRMPIYPKWMGADHADDLQYVFGKPFATPLGYRA-QDRT 459
Query: 184 LRPSLIAHMLNL 195
+ ++IA+ N
Sbjct: 460 VSKAMIAYWTNF 471
>pdb|1AKN|A Chain A, Structure Of Bile-salt Activated Lipase
Length = 579
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 69 MVIGLCISHRIVNATVLHK-FSDEWAKASRIGIHRVDNIELSFSLAMLLPTREMVPESMY 127
+V GL ++ + A ++ +++ WA+ S + ++L + L+PT+ V +
Sbjct: 347 LVSGLTVTKGLRGANATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAVAQH-- 404
Query: 128 VLPLKPGLKTASK-TFVF---YRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGK 183
K K+A+ T++F R+ I W AD+ + G F T + ++A +
Sbjct: 405 ----KSHAKSANTYTYLFSQPSRMPIYPKWMGADHADDLQYVFGKPFATPLGYRA-QDRT 459
Query: 184 LRPSLIAHMLNL 195
+ ++IA+ N
Sbjct: 460 VSKAMIAYWTNF 471
>pdb|2BCE|A Chain A, Cholesterol Esterase From Bos Taurus
Length = 579
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 69 MVIGLCISHRIVNATVLHK-FSDEWAKASRIGIHRVDNIELSFSLAMLLPTREMVPESMY 127
+V GL ++ + A ++ +++ WA+ S + ++L + L+PT+ V +
Sbjct: 347 LVSGLTVTKGLRGAQATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAVAQH-- 404
Query: 128 VLPLKPGLKTASK-TFVF---YRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGK 183
K K+A+ T++F R+ I W AD+ + G F T + ++A +
Sbjct: 405 ----KSHAKSANTYTYLFSQPSRMPIYPKWMGADHADDLQYVFGKPFATPLGYRA-QDRT 459
Query: 184 LRPSLIAHMLNL 195
+ ++IA+ N
Sbjct: 460 VSKAMIAYWTNF 471
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 10 IDRNDLGFEYLEAKAASSLAPFLD--RNVDSKQLIDFSPYQTESITSPLLPIQCNMFVCG 67
I+ N G ++EA++ + F D ++ ++LI Y + LL +Q F G
Sbjct: 89 IECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXG 148
Query: 68 GMVIGLCISHRIVNATVLHKFSDEWAKASR 97
G+ +G+ + H + F + W+ +R
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 116 LPTREMVPESMYVLPLKPGLKTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVI 175
L +R + M +L + GL A KT + Y+L + + T G + ++ +
Sbjct: 11 LFSRLFAKKEMRILMV--GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 68
Query: 176 WKALKHGKLRPSLIAHMLNLRGRTLLPISDD 206
W K+RP + N +G + S+D
Sbjct: 69 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 99
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 131 LKPGLKTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGKLRPSLIA 190
L GL A KT + Y+L + + T G + ++ +W K+RP
Sbjct: 169 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 228
Query: 191 HMLNLRGRTLLPISDD 206
+ N +G + S+D
Sbjct: 229 YFQNTQGLIFVVDSND 244
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 131 LKPGLKTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGKLRPSLIA 190
L GL A KT + Y+L + + T G + ++ +W K+RP
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80
Query: 191 HMLNLRGRTLLPISDD 206
+ N +G + S+D
Sbjct: 81 YFQNTQGLIFVVDSND 96
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 131 LKPGLKTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGKLRPSLIA 190
L GL A KT + Y+L + + T G + ++ +W K+RP
Sbjct: 20 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 79
Query: 191 HMLNLRGRTLLPISDD 206
+ N +G + S+D
Sbjct: 80 YFQNTQGLIFVVDSND 95
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 131 LKPGLKTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGKLRPSLIA 190
L GL A KT + Y+L + + T G + ++ +W K+RP
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 63
Query: 191 HMLNLRGRTLLPISDD 206
+ N +G + S+D
Sbjct: 64 YFQNTQGLIFVVDSND 79
>pdb|3LOR|A Chain A, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
pdb|3LOR|B Chain B, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
pdb|3LOR|C Chain C, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
pdb|3LOR|D Chain D, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
Length = 160
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 29 APFLDRNVDSKQLIDFSPYQTESITSPLLPIQCNMFVCGGMVIGLCISHRIVNATVLHKF 88
AP L+ +D ++ ++ E + ++ ++ +C G C++H + A +H+
Sbjct: 7 APLLE--LDVQEWVNHEGLSNEDLRGKVVVVEVFQXLCPG-----CVNHGVPQAQKIHRX 59
Query: 89 SDEWAKASRIGIHRV 103
DE ++ IG+H V
Sbjct: 60 IDE-SQVQVIGLHSV 73
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 131 LKPGLKTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKALKHGKLRPSLIA 190
L GL A KT + Y+L + + T G + + +W K+RP
Sbjct: 33 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRH 92
Query: 191 HMLNLRGRTLLPISDD 206
+ N +G + S+D
Sbjct: 93 YFQNTQGLIFVVDSND 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,352,040
Number of Sequences: 62578
Number of extensions: 324664
Number of successful extensions: 630
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 19
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)