Query 045888
Match_columns 290
No_of_seqs 158 out of 1320
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 11:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045888.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045888hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ja2 c.43.1.2 (A:181-418) P 97.5 0.00044 3.2E-08 56.4 12.1 101 137-243 31-134 (238)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 96.4 0.0021 1.5E-07 49.7 5.7 48 50-97 99-146 (174)
3 d1q9ja1 c.43.1.2 (A:1-175) Pol 94.3 0.054 3.9E-06 41.2 7.2 44 53-97 101-144 (175)
4 d1l5aa2 c.43.1.2 (A:175-424) V 90.8 0.83 6.1E-05 35.9 10.1 97 136-243 33-131 (250)
5 d1q23a_ c.43.1.1 (A:) Chloramp 85.7 0.24 1.7E-05 39.2 3.2 29 69-97 181-209 (214)
6 d3claa_ c.43.1.1 (A:) Chloramp 85.1 0.27 1.9E-05 38.8 3.2 29 69-97 181-209 (213)
7 d1b5sa_ c.43.1.1 (A:) Dihydrol 78.3 0.68 5E-05 37.2 3.3 29 69-97 207-235 (242)
8 d1scza_ c.43.1.1 (A:) Dihydrol 76.1 0.83 6.1E-05 36.4 3.2 29 69-97 196-224 (233)
9 d1dpba_ c.43.1.1 (A:) Dihydrol 75.9 0.84 6.1E-05 36.7 3.2 28 70-97 209-236 (243)
10 d1x93a1 a.43.1.3 (A:31-73) Unc 26.7 44 0.0032 17.6 3.6 22 139-160 3-24 (43)
No 1
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.55 E-value=0.00044 Score=56.42 Aligned_cols=101 Identities=14% Similarity=0.001 Sum_probs=80.9
Q ss_pred eeEEEEEECHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHhhh-c--CCCCCceEEEEEecCCCCCCCCCCCCCcccccc
Q 045888 137 TASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKAL-K--HGKLRPSLIAHMLNLRGRTLLPISDDCCGNPIK 213 (290)
Q Consensus 137 ~~~~~f~f~~~~i~~Lk~~a~~~~~~~~~S~~dal~A~iW~~~-~--~~~~~~~~l~~~vd~R~rl~pplp~~y~GN~~~ 213 (290)
.....+.++++.-++|++.+.+ ..+|.+.++.|-+-..+ + ..++....+..+++.|+++.|+..++.+||.+.
T Consensus 31 ~~~~~~~ls~~~t~~l~~~~~~----~~~T~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~G~~~~ 106 (238)
T d1q9ja2 31 VPVTRLWLSKQQTSDLMAFGRE----HRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLG 106 (238)
T ss_dssp CCEEEECCCHHHHHHHHHHHTT----TTCCHHHHHHHHHHHHHHHHHTCSSCCEEEEEEEETTTTSSSCCCTTTBSCCEE
T ss_pred CceEEEEeCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHHhCCCCccccccccccccccccCccccceeEeeee
Confidence 3456779999999999999987 56899999888654444 2 234566788999999999998888899999988
Q ss_pred ceeeeeeccccccchHHHHHHHHHHHHHhh
Q 045888 214 PIFIRFFQEMSKNIQLQDLVSLVGDATTKT 243 (290)
Q Consensus 214 ~~~~~~~~~~l~~~~l~~~A~~ir~ai~~~ 243 (290)
........+ .+.++.++++.+++.+.+.
T Consensus 107 ~~~~r~~~~--~~~~~~~l~~~v~~~l~~~ 134 (238)
T d1q9ja2 107 AASYLAEIG--PNTDIVDLASDIVATLRAD 134 (238)
T ss_dssp EEEEEECCC--SSCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEecC--CCCCHHHHHHHHHHHHHHH
Confidence 888777655 4678899999998888664
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=96.41 E-value=0.0021 Score=49.70 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCCCCCeeEEEEEEeecCeEEEeeeccccccccccHHHHHHHHHHHhc
Q 045888 50 ESITSPLLPIQCNMFVCGGMVIGLCISHRIVNATVLHKFSDEWAKASR 97 (290)
Q Consensus 50 ~~~~~Pll~vQvt~f~cGG~~lg~~~~H~v~Dg~~~~~fl~~Wa~~~r 97 (290)
+..+.|++.+.+-+...|...+.+++||.++||.|+..|++.+++..+
T Consensus 99 dl~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~ 146 (174)
T d1l5aa1 99 TLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (174)
T ss_dssp CCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHHH
Confidence 345678888888888889999999999999999999999999988764
No 3
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=94.34 E-value=0.054 Score=41.17 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=33.4
Q ss_pred CCCeeEEEEEEeecCeEEEeeeccccccccccHHHHHHHHHHHhc
Q 045888 53 TSPLLPIQCNMFVCGGMVIGLCISHRIVNATVLHKFSDEWAKASR 97 (290)
Q Consensus 53 ~~Pll~vQvt~f~cGG~~lg~~~~H~v~Dg~~~~~fl~~Wa~~~r 97 (290)
+.|+..+.+. ..+++..+.+++||.++||.|+..|++.+.+...
T Consensus 101 ~~~l~~~~i~-~~~~~~~l~l~~HH~i~Dg~S~~~ll~el~~~Y~ 144 (175)
T d1q9ja1 101 SVSLLHLQLI-LREGGAELTLYLHHCMADGHHGAVLVDELFSRYT 144 (175)
T ss_dssp TTCSEEEEEE-CCSSSCEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEE-ecCCeEEEEEEccccccCHhHHHHHHHHHHHHHH
Confidence 4555555544 3356678889999999999999999998876553
No 4
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=90.76 E-value=0.83 Score=35.93 Aligned_cols=97 Identities=8% Similarity=0.028 Sum_probs=69.2
Q ss_pred CeeEEEEEECHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHhhh--cCCCCCceEEEEEecCCCCCCCCCCCCCcccccc
Q 045888 136 KTASKTFVFYRLAISSLWTNADNKGLKRLPSGLQFVTTVIWKAL--KHGKLRPSLIAHMLNLRGRTLLPISDDCCGNPIK 213 (290)
Q Consensus 136 ~~~~~~f~f~~~~i~~Lk~~a~~~~~~~~~S~~dal~A~iW~~~--~~~~~~~~~l~~~vd~R~rl~pplp~~y~GN~~~ 213 (290)
......+.++.+..++|++.+.+ ..+|-+.++.|. |..+ ..+. +...+..+++.|..- --++.+|.++.
T Consensus 33 ~~~~~~~~l~~~~~~~l~~~a~~----~~~s~~~~l~aa-~~~~l~~~~~-~~~vig~~~~~R~~~---~~~~~~G~~~n 103 (250)
T d1l5aa2 33 HAVSLSYTLNSQLNHLLLKLANA----NQIGWPDALVAL-CALYLESAEP-DAPWLWLPFMNRWGS---VAANVPGLMVN 103 (250)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHH----TTCCHHHHHHHH-HHHHHHHHST-TCCEEEEEECCCTTS---GGGGSCSCCCE
T ss_pred CceEEEEEECHHHHHHHHHHHHh----cCCCHHHHHHHH-HHHHhhhhcc-ceeeccceecCCCCh---hhhhCeEeEEe
Confidence 45677899999999999999877 457888888885 5555 3333 345689999988542 23567777766
Q ss_pred ceeeeeeccccccchHHHHHHHHHHHHHhh
Q 045888 214 PIFIRFFQEMSKNIQLQDLVSLVGDATTKT 243 (290)
Q Consensus 214 ~~~~~~~~~~l~~~~l~~~A~~ir~ai~~~ 243 (290)
......... .+.++.++.+.+++.+.+.
T Consensus 104 ~lP~r~~~~--~~~t~~~ll~~v~~~~~~~ 131 (250)
T d1l5aa2 104 SLPLLRLSA--QQTSLGNYLKQSGQAIRSL 131 (250)
T ss_dssp EEEEECCCC--TTCBHHHHHHHHHHHHHHH
T ss_pred eeeEEEEeC--CCCCHHHHHHHHHHHHHHh
Confidence 555555443 3568888999988887665
No 5
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=85.75 E-value=0.24 Score=39.21 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=26.1
Q ss_pred EEEeeeccccccccccHHHHHHHHHHHhc
Q 045888 69 MVIGLCISHRIVNATVLHKFSDEWAKASR 97 (290)
Q Consensus 69 ~~lg~~~~H~v~Dg~~~~~fl~~Wa~~~r 97 (290)
+-|++++||.++||.-+..|++.+.+...
T Consensus 181 mplsls~dHrvvDG~~~a~Fl~~lq~~le 209 (214)
T d1q23a_ 181 MPLAIQVHHAVCDGFHVGRMLNELQQYCD 209 (214)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHh
Confidence 46899999999999999999999998764
No 6
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=85.09 E-value=0.27 Score=38.82 Aligned_cols=29 Identities=7% Similarity=0.283 Sum_probs=26.9
Q ss_pred EEEeeeccccccccccHHHHHHHHHHHhc
Q 045888 69 MVIGLCISHRIVNATVLHKFSDEWAKASR 97 (290)
Q Consensus 69 ~~lg~~~~H~v~Dg~~~~~fl~~Wa~~~r 97 (290)
+-|++++||.+.||.-+..|++.+.+++.
T Consensus 181 m~lsls~dHrviDG~~aa~Fl~~lk~~le 209 (213)
T d3claa_ 181 LPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecccccccHHHHHHHHHHHHHHh
Confidence 66999999999999999999999998875
No 7
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=78.26 E-value=0.68 Score=37.16 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=26.5
Q ss_pred EEEeeeccccccccccHHHHHHHHHHHhc
Q 045888 69 MVIGLCISHRIVNATVLHKFSDEWAKASR 97 (290)
Q Consensus 69 ~~lg~~~~H~v~Dg~~~~~fl~~Wa~~~r 97 (290)
+-|++++.|.+.||.-+..|++.|.+..-
T Consensus 207 m~lslt~DHRviDGa~aa~Fl~~l~~~lE 235 (242)
T d1b5sa_ 207 LALSLSFDHRMIDGATAQKALNHIKRLLS 235 (242)
T ss_dssp EEEEEEECTTTSCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcchhChHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999865
No 8
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=76.09 E-value=0.83 Score=36.43 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=26.7
Q ss_pred EEEeeeccccccccccHHHHHHHHHHHhc
Q 045888 69 MVIGLCISHRIVNATVLHKFSDEWAKASR 97 (290)
Q Consensus 69 ~~lg~~~~H~v~Dg~~~~~fl~~Wa~~~r 97 (290)
+.|++++.|.+.||.-+..|++.|.+..-
T Consensus 196 ~~lsls~DHRviDGa~aa~Fl~~l~~~lE 224 (233)
T d1scza_ 196 MYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEhhcchhccHHHHHHHHHHHHHHh
Confidence 56899999999999999999999998765
No 9
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=75.92 E-value=0.84 Score=36.65 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=25.8
Q ss_pred EEeeeccccccccccHHHHHHHHHHHhc
Q 045888 70 VIGLCISHRIVNATVLHKFSDEWAKASR 97 (290)
Q Consensus 70 ~lg~~~~H~v~Dg~~~~~fl~~Wa~~~r 97 (290)
-|++++.|.+.||.-+..|++.|.+...
T Consensus 209 ~ltls~DHRvidGa~aa~FL~~l~~~lE 236 (243)
T d1dpba_ 209 PLSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccccHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999998765
No 10
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=26.74 E-value=44 Score=17.63 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=18.6
Q ss_pred EEEEEECHHHHHHHHHHhhcCC
Q 045888 139 SKTFVFYRLAISSLWTNADNKG 160 (290)
Q Consensus 139 ~~~f~f~~~~i~~Lk~~a~~~~ 160 (290)
...++|+.++.++|.+.+.++.
T Consensus 3 avslyfsdeqyqklekmaneee 24 (43)
T d1x93a1 3 AVSLYFSDEQYQKLEKMANEEE 24 (43)
T ss_dssp EEEEEECHHHHHHHHHHHHHTT
T ss_pred ceeeEecHHHHHHHHHHhhhhH
Confidence 4578999999999999987753
Done!