BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045889
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 12 LTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY 71
+ ++ L++ L M + L + L L+ N ++ CVG+ F L + L S+Y
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-----RITCVGNDSFIGLSSVRLLSLY 137
Query: 72 WLDEWTMGAGAMPKLES-----LIANP 93
T+ GA L S L+ANP
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLANP 164
>pdb|3JX8|A Chain A, Crystal Structure Of Putative Lipid Binding Protein
(Yp_001304415.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
pdb|3JX8|B Chain B, Crystal Structure Of Putative Lipid Binding Protein
(Yp_001304415.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
pdb|3JX8|C Chain C, Crystal Structure Of Putative Lipid Binding Protein
(Yp_001304415.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
pdb|3JX8|D Chain D, Crystal Structure Of Putative Lipid Binding Protein
(Yp_001304415.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
pdb|3JX8|E Chain E, Crystal Structure Of Putative Lipid Binding Protein
(Yp_001304415.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
pdb|3JX8|F Chain F, Crystal Structure Of Putative Lipid Binding Protein
(Yp_001304415.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
Length = 250
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 35 RPQVLKLKQNSYLGRKLACVGSGGF 59
RP V K+K NS ++L VGSG F
Sbjct: 85 RPTVYKIKSNSKELKELNTVGSGSF 109
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 2 VRSVYQFPPILTDLSLSNTELMEDPM--PMMEKL 33
+RS+ PP L +L++SN +L+E P P +E+L
Sbjct: 309 IRSLCDLPPSLEELNVSNNKLIELPALPPRLERL 342
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPE 61
+ S Q P LT+LSL EL + + ++ + + K+++ S L G G P
Sbjct: 44 ISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPG 103
Query: 62 -LKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKE 103
L+ L+ L++ MG + L + +P L KL E
Sbjct: 104 MLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLE 146
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 25.8 bits (55), Expect = 9.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 15 LSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLD 74
+SLSN L + + +L +LKL NS+ G A +G + +S+ WLD
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG----------DCRSLIWLD 541
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 25.8 bits (55), Expect = 9.6, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 15 LSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLD 74
+SLSN L + + +L +LKL NS+ G A +G + +S+ WLD
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG----------DCRSLIWLD 544
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,597,170
Number of Sequences: 62578
Number of extensions: 183414
Number of successful extensions: 430
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 21
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)