Query 045889
Match_columns 145
No_of_seqs 118 out of 1713
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.2 3.2E-11 6.8E-16 100.5 5.6 112 4-117 158-269 (968)
2 PLN00113 leucine-rich repeat r 99.2 3.9E-11 8.4E-16 99.9 5.3 115 2-118 180-294 (968)
3 KOG0617 Ras suppressor protein 99.1 2.7E-12 5.9E-17 86.3 -4.2 112 3-118 49-183 (264)
4 PLN03210 Resistant to P. syrin 98.9 3.1E-09 6.8E-14 90.2 8.2 112 2-119 604-715 (1153)
5 PLN03210 Resistant to P. syrin 98.8 2.1E-08 4.5E-13 85.3 7.3 108 9-119 777-904 (1153)
6 PLN03150 hypothetical protein; 98.7 1.6E-08 3.4E-13 81.1 5.7 106 12-119 420-526 (623)
7 KOG0617 Ras suppressor protein 98.7 1.1E-09 2.5E-14 73.8 -2.6 106 8-118 31-160 (264)
8 KOG4194 Membrane glycoprotein 98.5 7.5E-09 1.6E-13 80.9 -1.3 110 7-119 314-427 (873)
9 PF13855 LRR_8: Leucine rich r 98.5 6.3E-08 1.4E-12 54.4 2.4 59 10-70 1-59 (61)
10 PLN03150 hypothetical protein; 98.5 1.1E-07 2.5E-12 76.2 4.7 99 2-102 434-533 (623)
11 KOG0472 Leucine-rich repeat pr 98.5 8.5E-09 1.9E-13 77.4 -1.7 109 5-119 430-539 (565)
12 PF14580 LRR_9: Leucine-rich r 98.4 5.7E-08 1.2E-12 66.0 0.5 104 8-119 17-124 (175)
13 KOG0444 Cytoskeletal regulator 98.4 9.7E-09 2.1E-13 81.1 -4.9 113 2-119 214-327 (1255)
14 PF14580 LRR_9: Leucine-rich r 98.1 5.2E-07 1.1E-11 61.4 0.1 106 8-119 40-151 (175)
15 KOG0618 Serine/threonine phosp 98.0 6.9E-07 1.5E-11 73.0 -0.9 108 6-119 379-487 (1081)
16 KOG0472 Leucine-rich repeat pr 98.0 2.2E-07 4.8E-12 70.0 -3.5 111 2-119 198-308 (565)
17 KOG0618 Serine/threonine phosp 98.0 2.2E-07 4.8E-12 75.8 -4.4 106 9-119 358-463 (1081)
18 KOG3665 ZYG-1-like serine/thre 98.0 9.2E-07 2E-11 71.7 -1.0 106 10-118 122-230 (699)
19 PF13855 LRR_8: Leucine rich r 98.0 4E-06 8.7E-11 47.0 1.9 42 4-45 19-60 (61)
20 KOG4194 Membrane glycoprotein 97.9 4.9E-06 1.1E-10 65.6 1.3 105 7-118 194-303 (873)
21 cd00116 LRR_RI Leucine-rich re 97.9 5.1E-07 1.1E-11 66.2 -4.2 37 83-119 192-232 (319)
22 KOG0444 Cytoskeletal regulator 97.8 8.8E-07 1.9E-11 70.4 -3.4 115 2-119 237-373 (1255)
23 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 41.4 2.7 37 10-47 1-37 (44)
24 KOG3207 Beta-tubulin folding c 97.8 1.7E-06 3.6E-11 65.7 -2.5 62 8-70 170-232 (505)
25 PRK15370 E3 ubiquitin-protein 97.7 0.00018 3.9E-09 59.2 7.2 96 9-118 198-293 (754)
26 KOG4658 Apoptotic ATPase [Sign 97.7 1.4E-05 3E-10 66.5 0.9 111 6-119 567-679 (889)
27 cd00116 LRR_RI Leucine-rich re 97.6 5.1E-06 1.1E-10 60.9 -2.2 60 60-119 193-261 (319)
28 KOG1259 Nischarin, modulator o 97.6 4.3E-06 9.3E-11 61.3 -2.7 104 10-119 284-410 (490)
29 KOG4658 Apoptotic ATPase [Sign 97.6 3.4E-05 7.3E-10 64.3 2.0 106 10-118 545-652 (889)
30 KOG0532 Leucine-rich repeat (L 97.5 7.3E-06 1.6E-10 64.3 -2.6 111 2-119 113-245 (722)
31 PRK15387 E3 ubiquitin-protein 97.5 0.00015 3.4E-09 59.6 4.7 98 10-119 342-456 (788)
32 KOG3207 Beta-tubulin folding c 97.5 6.5E-06 1.4E-10 62.6 -3.3 87 7-94 143-232 (505)
33 KOG1259 Nischarin, modulator o 97.4 2.7E-05 5.9E-10 57.2 -0.2 63 28-95 278-340 (490)
34 PRK15370 E3 ubiquitin-protein 97.4 0.00019 4.2E-09 59.0 4.2 100 10-119 262-378 (754)
35 PRK15386 type III secretion pr 97.4 0.00041 8.8E-09 53.2 5.2 97 8-119 50-167 (426)
36 PRK15387 E3 ubiquitin-protein 97.3 0.00085 1.8E-08 55.4 6.6 34 10-47 222-255 (788)
37 PF12799 LRR_4: Leucine Rich r 97.2 0.0005 1.1E-08 35.9 2.9 35 84-119 1-35 (44)
38 KOG1859 Leucine-rich repeat pr 96.8 8E-06 1.7E-10 65.9 -8.5 105 8-119 185-290 (1096)
39 KOG1644 U2-associated snRNP A' 96.8 0.0029 6.2E-08 44.1 4.5 105 10-119 42-151 (233)
40 KOG0532 Leucine-rich repeat (L 96.7 1.3E-05 2.7E-10 63.0 -7.9 105 8-119 96-200 (722)
41 COG4886 Leucine-rich repeat (L 96.6 0.00052 1.1E-08 52.1 -0.0 14 31-44 160-173 (394)
42 KOG1859 Leucine-rich repeat pr 96.6 3.3E-05 7.1E-10 62.5 -6.7 100 11-118 165-264 (1096)
43 COG4886 Leucine-rich repeat (L 96.6 0.0007 1.5E-08 51.4 0.6 110 3-118 156-287 (394)
44 KOG4237 Extracellular matrix p 96.6 8.8E-05 1.9E-09 56.1 -4.2 67 9-77 66-132 (498)
45 KOG4237 Extracellular matrix p 96.5 0.00068 1.5E-08 51.5 -0.0 62 7-70 271-332 (498)
46 KOG3665 ZYG-1-like serine/thre 96.5 0.0019 4.1E-08 52.9 2.4 114 8-126 146-270 (699)
47 KOG2982 Uncharacterized conser 96.2 0.00091 2E-08 49.2 -0.7 110 8-120 69-185 (418)
48 KOG4341 F-box protein containi 96.0 0.002 4.4E-08 49.2 0.3 118 10-128 320-446 (483)
49 KOG2120 SCF ubiquitin ligase, 96.0 0.00076 1.6E-08 49.6 -1.9 111 6-119 256-374 (419)
50 KOG2739 Leucine-rich acidic nu 95.9 0.0055 1.2E-07 43.9 2.2 105 9-118 42-153 (260)
51 PRK15386 type III secretion pr 95.9 0.031 6.8E-07 43.1 6.3 34 8-44 70-104 (426)
52 KOG1644 U2-associated snRNP A' 95.9 0.017 3.6E-07 40.4 4.4 87 6-94 60-150 (233)
53 KOG4579 Leucine-rich repeat (L 95.7 0.00014 3E-09 47.7 -6.0 103 12-118 29-133 (177)
54 KOG2123 Uncharacterized conser 95.6 0.00025 5.4E-09 51.7 -5.7 112 9-127 18-137 (388)
55 KOG0531 Protein phosphatase 1, 95.5 0.0037 8E-08 48.1 0.1 106 6-119 91-197 (414)
56 KOG2739 Leucine-rich acidic nu 95.5 0.0087 1.9E-07 43.0 1.8 89 6-95 61-154 (260)
57 KOG2120 SCF ubiquitin ligase, 95.2 0.0092 2E-07 44.1 1.3 85 10-95 286-374 (419)
58 PF00560 LRR_1: Leucine Rich R 94.1 0.028 6E-07 24.6 0.9 21 85-106 1-21 (22)
59 KOG3864 Uncharacterized conser 94.0 0.0029 6.3E-08 43.9 -3.5 31 12-42 103-133 (221)
60 PF13504 LRR_7: Leucine rich r 93.9 0.032 6.9E-07 22.8 0.9 13 11-23 2-14 (17)
61 KOG0531 Protein phosphatase 1, 93.8 0.016 3.5E-07 44.6 -0.2 82 6-94 114-196 (414)
62 KOG2123 Uncharacterized conser 93.1 0.0019 4E-08 47.2 -5.8 82 7-91 38-124 (388)
63 KOG3864 Uncharacterized conser 93.0 0.0068 1.5E-07 42.1 -3.0 64 7-71 122-187 (221)
64 KOG1909 Ran GTPase-activating 92.4 0.051 1.1E-06 40.8 0.6 12 107-118 297-308 (382)
65 KOG1909 Ran GTPase-activating 91.3 0.0079 1.7E-07 45.0 -4.5 13 10-22 92-104 (382)
66 smart00370 LRR Leucine-rich re 90.9 0.21 4.5E-06 22.5 1.7 20 9-28 1-20 (26)
67 smart00369 LRR_TYP Leucine-ric 90.9 0.21 4.5E-06 22.5 1.7 20 9-28 1-20 (26)
68 KOG2982 Uncharacterized conser 88.9 0.24 5.1E-06 36.9 1.4 63 6-70 93-156 (418)
69 KOG4579 Leucine-rich repeat (L 87.4 0.078 1.7E-06 35.1 -1.6 60 9-71 52-111 (177)
70 PF13516 LRR_6: Leucine Rich r 87.0 0.035 7.5E-07 24.7 -2.5 14 10-23 2-15 (24)
71 KOG4341 F-box protein containi 84.9 0.23 4.9E-06 38.4 -0.5 110 9-119 293-412 (483)
72 PF13306 LRR_5: Leucine rich r 83.3 5.6 0.00012 24.7 5.6 104 5-117 7-112 (129)
73 KOG1947 Leucine rich repeat pr 82.5 0.089 1.9E-06 40.6 -3.6 110 9-119 187-306 (482)
74 KOG1947 Leucine rich repeat pr 76.6 0.59 1.3E-05 36.0 -0.8 9 10-18 214-222 (482)
75 smart00364 LRR_BAC Leucine-ric 74.4 2.1 4.5E-05 19.6 1.1 16 10-25 2-17 (26)
76 smart00367 LRR_CC Leucine-rich 70.3 3.8 8.2E-05 18.2 1.5 11 85-95 3-13 (26)
77 smart00368 LRR_RI Leucine rich 67.4 3.5 7.6E-05 18.8 1.0 14 10-23 2-15 (28)
78 smart00365 LRR_SD22 Leucine-ri 64.4 5 0.00011 18.2 1.2 13 10-22 2-14 (26)
79 KOG3763 mRNA export factor TAP 59.6 3.2 6.9E-05 33.4 0.1 62 8-71 216-281 (585)
80 COG5238 RNA1 Ran GTPase-activa 48.7 16 0.00034 27.3 2.2 37 82-118 90-130 (388)
81 TIGR00864 PCC polycystin catio 40.4 20 0.00043 34.6 2.0 30 17-46 2-31 (2740)
82 COG5238 RNA1 Ran GTPase-activa 39.7 20 0.00042 26.9 1.5 40 6-45 88-131 (388)
83 smart00446 LRRcap occurring C- 31.3 17 0.00036 16.6 0.0 13 29-41 8-20 (26)
84 KOG3763 mRNA export factor TAP 25.7 24 0.00053 28.6 0.1 64 32-96 216-282 (585)
85 PF05725 FNIP: FNIP Repeat; I 25.6 1E+02 0.0022 15.4 2.9 6 62-67 14-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=3.2e-11 Score=100.47 Aligned_cols=112 Identities=21% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCC
Q 045889 4 SVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAM 83 (145)
Q Consensus 4 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 83 (145)
..++.+++|++|++++|.+.+..+..++++++|++|++++|.+.+.. +.. ...+++|+.|++.++.....++...+.+
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChH-HcCcCCccEEECcCCccCCcCChhHhcC
Confidence 33444455555555555444444344455555555555444433211 111 1233444444444332222222223334
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecC
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHW 117 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~ 117 (145)
++|+.|.+.+|...+.+|..++++++|+.|++++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 4444444444333333333444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=3.9e-11 Score=99.94 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|.++..+++|++|++++|.+.+..+..++++++|+.|+++.|.+.+. ++.. ...+++|+.|++.++...+.++...+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYE-IGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChh-HhcCCCCCEEECcCceeccccChhHh
Confidence 466667777788888877777666666677777777777776665542 2211 23455666666655443333443444
Q ss_pred CCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 82 AMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.+++|+.|.+..|...+.+|..+.++++|++|++++|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 4555555555554444444444444555555555443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.07 E-value=2.7e-12 Score=86.27 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEe-----------------------ecccccCcEEEEecCCCC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKL-----------------------KQNSYLGRKLACVGSGGF 59 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l-----------------------~~~~~~~~~~~~~~~~~~ 59 (145)
|+-++.+.+|+.|.+++|+++..+ .+++.+|.|+.|.+ ..|+.....++.- ...+
T Consensus 49 ppnia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn-ff~m 126 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN-FFYM 126 (264)
T ss_pred CCcHHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc-hhHH
Confidence 444455555555555555554433 34455555555555 4444333222211 1122
Q ss_pred ccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 60 PELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
..|+.|+++++ ..+.+|...|.+.+|+.|.+.++..+ ++|.+++.++.|++|.+.++
T Consensus 127 ~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 127 TTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 34444444443 24455666677777777777776544 57888888888888888776
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.94 E-value=3.1e-09 Score=90.22 Aligned_cols=112 Identities=23% Similarity=0.227 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|.++ .+.+|+.|++.+|.+...+ ..+..+++|++|+++++........ ...+++|+.|++.+|..+..+|...+
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred CCCcC-CccCCcEEECcCccccccc-cccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhh
Confidence 34444 3467888888888765433 4567888999999976543332222 34578999999998888888888888
Q ss_pred CCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 82 AMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.+++|+.|.+.+|+.++.+|.++ ++++|+.|++++|.
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 89999999999999899999877 78899999998885
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.77 E-value=2.1e-08 Score=85.33 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=67.9
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCC----------------
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYW---------------- 72 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------- 72 (145)
+++|+.|++++|......+.+++++++|+.|++++|.... .++.. ..+++|+.|++++|..
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~--~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTG--INLESLESLDLSGCSRLRTFPDISTNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-eeCCC--CCccccCEEECCCCCccccccccccccCEeEC
Confidence 4566666666664444444556666666666665443222 11111 1244444444444433
Q ss_pred ----CccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 73 ----LDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 73 ----~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++.+|...+.+++|+.|.+.+|+.+..+|..+..+++|+.+++++|.
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 34455555678889999999998888888888888889999988886
No 6
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=1.6e-08 Score=81.13 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=83.6
Q ss_pred CcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCceeee
Q 045889 12 LTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESLIA 91 (145)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 91 (145)
++.|+|++|.+.+..+..++++++|+.|+|++|.+.+. ++.. ...+++|+.|+++++...+.+|...+.+++|+.|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 67889999998888778899999999999998888763 3323 456889999999987655677777788999999999
Q ss_pred ccCcccCCCCccCCCC-CCCCEEEecCCc
Q 045889 92 NPCAYLRKLPKELWCV-KSLCKLDLHWPQ 119 (145)
Q Consensus 92 ~~~~~l~~lp~~l~~l-~~L~~L~l~~~~ 119 (145)
.+|...+.+|..++.+ ..+..+++.+++
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9888888888877653 355677777654
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.66 E-value=1.1e-09 Score=73.76 Aligned_cols=106 Identities=28% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCc
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLE 87 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 87 (145)
.+.+++.|++++|.++-.+ +.++.+.+|+.|.+++|+... ++.+ ...+|+|+.|.++ +..+...|-+.|++|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie~--lp~~-issl~klr~lnvg-mnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIEE--LPTS-ISSLPKLRILNVG-MNRLNILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhhh--cChh-hhhchhhhheecc-hhhhhcCccccCCCchhh
Confidence 4578889999999987665 678999999999998777643 3333 4456777777665 334555666666777777
Q ss_pred eeeeccCcc------------------------cCCCCccCCCCCCCCEEEecCC
Q 045889 88 SLIANPCAY------------------------LRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 88 ~L~l~~~~~------------------------l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.|++..++. .+.+|..+++++.|+.|.+..+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 766654331 2346778888888888888766
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.55 E-value=7.5e-09 Score=80.87 Aligned_cols=110 Identities=24% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC---CCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA---GAM 83 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~ 83 (145)
.+.+.|+.|+|++|.++..+.+++.-|..|+.|.|++|....- -... ..++.+|++|++.++.-.-.+.-.. ..+
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~a-f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AEGA-FVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-HhhH-HHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 3445555555555555555545555555555555555543220 0011 2346788888888754221221111 148
Q ss_pred CCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+.|+.|.+.+ ++++.||. .+..+.+|++|++.+++
T Consensus 392 ~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 392 PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 8999999977 56888888 77889999999998873
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.52 E-value=6.3e-08 Score=54.44 Aligned_cols=59 Identities=31% Similarity=0.450 Sum_probs=45.9
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCC
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSM 70 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 70 (145)
++|++|++++|.+...+...+..+++|++|++++|.... +.......+++|++|++.++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCC
Confidence 578999999999887777788999999999998887743 22221456888888888765
No 10
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.1e-07 Score=76.23 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|..+..+++|+.|+|++|.+.+..+..++.+++|+.|++++|.+.+.. +.. ...+++|+.|++.++...+.+|...+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~-l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PES-LGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chH-HhcCCCCCEEECcCCcccccCChHHh
Confidence 5667788999999999999999888788999999999999999988743 333 45799999999998875566665544
Q ss_pred CC-CCCceeeeccCcccCCCCc
Q 045889 82 AM-PKLESLIANPCAYLRKLPK 102 (145)
Q Consensus 82 ~~-~~L~~L~l~~~~~l~~lp~ 102 (145)
.. .++..+.+.++..++..|.
T Consensus 512 ~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 512 GRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred hccccCceEEecCCccccCCCC
Confidence 43 4667788887776665543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.52 E-value=8.5e-09 Score=77.41 Aligned_cols=109 Identities=25% Similarity=0.191 Sum_probs=76.6
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 83 (145)
.+..+++|..|++++|-+...| ..++.+..|+.|+++.|.|..-. .+ ......++.+-.++ ..+++++.+ .+.|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP-~e~~~lv~Lq~LnlS~NrFr~lP-~~--~y~lq~lEtllas~-nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLP-EEMGSLVRLQTLNLSFNRFRMLP-EC--LYELQTLETLLASN-NQIGSVDPSGLKNM 504 (565)
T ss_pred HHHhhhcceeeecccchhhhcc-hhhhhhhhhheecccccccccch-HH--HhhHHHHHHHHhcc-ccccccChHHhhhh
Confidence 4567788888899888775554 45677777889998888664311 11 11223333333333 346666655 6788
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.+|..|++.++. +..+|++++++++|++|.+.++|
T Consensus 505 ~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 505 RNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 899999997654 77899999999999999999997
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=5.7e-08 Score=66.01 Aligned_cols=104 Identities=23% Similarity=0.297 Sum_probs=32.7
Q ss_pred CCCCCcEEEEecccCCCCCchhcc-CCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMME-KLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMPK 85 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 85 (145)
++..++.|+|++|.++.. +.++ .+.+|+.|+++.|.... ... ...++.|+.|++.++. +..+.... ..+|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~~---l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LEG---LPGLPRLKTLDLSNNR-ISSISEGLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---TT-------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-ccC---ccChhhhhhcccCCCC-CCccccchHHhCCc
Confidence 445678888888877542 3455 57788888888776643 111 3357888888888654 44442111 24788
Q ss_pred CceeeeccCcccCCCC--ccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLP--KELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.++++. +..+- ..+..+++|+.|++.++|
T Consensus 90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 8888887643 33332 256677888888888887
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.36 E-value=9.7e-09 Score=81.14 Aligned_cols=113 Identities=22% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|..+..+.+|..++++.|.+...| +.+-++++|+.|+|++|.++. +... .+.+.+|++|.++.++ +..+|...-
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLNLS~N~ite--L~~~-~~~W~~lEtLNlSrNQ-Lt~LP~avc 288 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLNLSGNKITE--LNMT-EGEWENLETLNLSRNQ-LTVLPDAVC 288 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheeccCcCceee--eecc-HHHHhhhhhhccccch-hccchHHHh
Confidence 5677777778888888888776554 667788888888888777643 2222 3346667777776553 444554444
Q ss_pred CCCCCceeeeccCcc-cCCCCccCCCCCCCCEEEecCCc
Q 045889 82 AMPKLESLIANPCAY-LRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~-l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.+++|+.|...++.. .+.||++||.+.+|+++...++.
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 566666666654422 35677777777777776666553
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.13 E-value=5.2e-07 Score=61.36 Aligned_cols=106 Identities=25% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC--CCccEEEcCCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY--WLDEWTMGAGAMPK 85 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~ 85 (145)
.+.+|+.|++++|.++.. +.+..+++|+.|+++.|....-...+ ...+|+|+.|++.++. .+..+ .....+|+
T Consensus 40 ~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l--~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~ 114 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGL--DKNLPNLQELYLSNNKISDLNEL-EPLSSLPK 114 (175)
T ss_dssp T-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH--HHH-TT--EEE-TTS---SCCCC-GGGGG-TT
T ss_pred hhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccch--HHhCCcCCEEECcCCcCCChHHh-HHHHcCCC
Confidence 468999999999998754 46788999999999988876521111 1248999999998654 22332 23347899
Q ss_pred CceeeeccCcccCCCCc----cCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPK----ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|+.... +. -+..+++|+.|+-....
T Consensus 115 L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 115 LRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp --EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETT
T ss_pred cceeeccCCcccch-hhHHHHHHHHcChhheeCCEEcc
Confidence 99999998876532 33 36778999999876654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.03 E-value=6.9e-07 Score=73.01 Aligned_cols=108 Identities=24% Similarity=0.183 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+....+|++|+|++|++...+...+.+++.|+.|++++|.+.. ++.. ...++.|++|...++. +..+| +...++.
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~t-va~~~~L~tL~ahsN~-l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDT-VANLGRLHTLRAHSNQ-LLSFP-ELAQLPQ 453 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHH-HHhhhhhHHHhhcCCc-eeech-hhhhcCc
Confidence 3456788888998888887777778888888888888887654 2222 3456777777766542 44555 6667788
Q ss_pred CceeeeccCcccC-CCCccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|+.++++.+.... .+|...-. +.|++|+++++.
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 8888886554321 22332221 688888888886
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.02 E-value=2.2e-07 Score=69.99 Aligned_cols=111 Identities=20% Similarity=0.067 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|+.++.+.+|.-|+++.|.+...| .++.+..|..++++.|.... ++......++++..|++.++ .++++|.+.-
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdN-klke~Pde~c 272 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDN-KLKEVPDEIC 272 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeecccc-ccccCchHHH
Confidence 5666666666666666666654433 55555666666665444322 11110235788889999876 4888887776
Q ss_pred CCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 82 AMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
-+.+|++|+++++. +..+|..+|++ .|+.|.+.++|
T Consensus 273 lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 77789999997654 67889999999 99999999987
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.99 E-value=2.2e-07 Score=75.80 Aligned_cols=106 Identities=26% Similarity=0.284 Sum_probs=86.1
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCce
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLES 88 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 88 (145)
.+.|+.|++.+|.++....+.+.+.++|+.|+|++|.+.. ..... ..+++.|+.|+++++ .+..++.+...+++|+.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~-~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASK-LRKLEELEELNLSGN-KLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHH-HhchHHhHHHhcccc-hhhhhhHHHHhhhhhHH
Confidence 4678889999999988877889999999999999886542 22222 456889999999986 58888877778899999
Q ss_pred eeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 89 LIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 89 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|...+ +.+..+| .+..++.|+.++++.+.
T Consensus 435 L~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 435 LRAHS-NQLLSFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HhhcC-Cceeech-hhhhcCcceEEecccch
Confidence 98755 4567788 88899999999999875
No 18
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=9.2e-07 Score=71.66 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=66.8
Q ss_pred CCCcEEEEeccc-CCCCCchhcc-CCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCc
Q 045889 10 PILTDLSLSNTE-LMEDPMPMME-KLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLE 87 (145)
Q Consensus 10 ~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 87 (145)
.+|++|++++.. +....+..++ .||+|+.|.+.+..+..+....- ...||+|..||+++.. +..+ .+.+.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~l-c~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQL-CASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHH-hhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 467888888864 3333334455 67999999987666654432222 3468999999998753 4444 5666778888
Q ss_pred eeeeccCcccC-CCCccCCCCCCCCEEEecCC
Q 045889 88 SLIANPCAYLR-KLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 88 ~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~ 118 (145)
.|.+.+..... .--..+-+|+.|+.||+|..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 87776544321 11124566778888888764
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.98 E-value=4e-06 Score=46.96 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=37.9
Q ss_pred CCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc
Q 045889 4 SVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS 45 (145)
Q Consensus 4 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 45 (145)
.++..+++|++|++++|.+...++..+..+++|++|++++|.
T Consensus 19 ~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 19 DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478889999999999999988777889999999999998875
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.87 E-value=4.9e-06 Score=65.59 Aligned_cols=105 Identities=26% Similarity=0.348 Sum_probs=49.4
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCc-EEEEecCCCCccccEEeccCCCCCccEEEcCC---C
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGR-KLACVGSGGFPELKVLNLKSMYWLDEWTMGAG---A 82 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~ 82 (145)
..+.+|..|.|+.|+++..+...+.+||+|+.|+|..|...-. .+. .+++++|+.|.+.++. +..+ ..| .
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt---FqgL~Sl~nlklqrN~-I~kL--~DG~Fy~ 267 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT---FQGLPSLQNLKLQRND-ISKL--DDGAFYG 267 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh---hcCchhhhhhhhhhcC-cccc--cCcceee
Confidence 3445556666666666555555566666666666654543221 111 2345555555554321 1111 111 2
Q ss_pred CCCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCC
Q 045889 83 MPKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWP 118 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 118 (145)
+.+++.|.+..+. +.++.. ++-++++|+.|+++.+
T Consensus 268 l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 268 LEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred ecccceeecccch-hhhhhcccccccchhhhhccchh
Confidence 3345555554332 222222 4455555566655554
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.85 E-value=5.1e-07 Score=66.21 Aligned_cols=37 Identities=30% Similarity=0.152 Sum_probs=21.3
Q ss_pred CCCCceeeeccCccc----CCCCccCCCCCCCCEEEecCCc
Q 045889 83 MPKLESLIANPCAYL----RKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l----~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+++|+.|.+.+|... ..+...+..+++|++|++++|+
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 346777777665422 1223344556677777777764
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.83 E-value=8.8e-07 Score=70.42 Aligned_cols=115 Identities=23% Similarity=0.170 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCc----------------------hhccCCCCCCEEEeecccccCcEEEEecCCCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPM----------------------PMMEKLPRPQVLKLKQNSYLGRKLACVGSGGF 59 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~----------------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 59 (145)
+|.-+..+.+|+.|.|++|.++...+ ..+.+|+.|+.|+..+|.+.=+.++.+ ++.+
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL 315 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKL 315 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc-hhhh
Confidence 45556667777777777776654322 233444555555554444333333333 5556
Q ss_pred ccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 60 PELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
-+|+.+...++ .++-+|-+...+++|+.|.+.. +.+-.+|++|.-++.|+.|++..+|
T Consensus 316 ~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 316 IQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhHHHHhhcc-ccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence 66766666643 4666776667778888888844 4555688888888889999998875
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.9e-05 Score=41.35 Aligned_cols=37 Identities=32% Similarity=0.542 Sum_probs=29.1
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeeccccc
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYL 47 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 47 (145)
++|++|++++|.++..+ +.+++|++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence 57999999999987543 45999999999999888765
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.7e-06 Score=65.69 Aligned_cols=62 Identities=24% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCCCCcEEEEecccCCCCCchh-ccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPM-MEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSM 70 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 70 (145)
.+++|+.|.++.|.+....-.. -..+++|+.|.+++|.++...+..- ...||+|+.|++..+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~-~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI-LLTFPSLEVLYLEAN 232 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH-HHhCCcHHHhhhhcc
Confidence 4555555555555554332111 1134555555554444432111111 123555555555443
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.67 E-value=0.00018 Score=59.17 Aligned_cols=96 Identities=21% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCce
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLES 88 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 88 (145)
+++|+.|++++|.++..+.. + .++|+.|++++|.+.. ++. ...++|+.|+++++. +..+|.. ...+|+.
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N~Lts--LP~---~l~~~L~~L~Ls~N~-L~~LP~~--l~s~L~~ 266 (754)
T PRK15370 198 PEQITTLILDNNELKSLPEN-L--QGNIKTLYANSNQLTS--IPA---TLPDTIQEMELSINR-ITELPER--LPSALQS 266 (754)
T ss_pred ccCCcEEEecCCCCCcCChh-h--ccCCCEEECCCCcccc--CCh---hhhccccEEECcCCc-cCcCChh--HhCCCCE
Confidence 35788888888888765532 2 2578888888776653 111 123467777777653 3444322 1235777
Q ss_pred eeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 89 LIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 89 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
|.+.+ +.+..+|..+. ++|+.|++++|
T Consensus 267 L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 267 LDLFH-NKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred EECcC-CccCccccccC--CCCcEEECCCC
Confidence 77754 34556666543 36777777665
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.66 E-value=1.4e-05 Score=66.51 Aligned_cols=111 Identities=22% Similarity=0.177 Sum_probs=60.4
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..++.|++|||++|.--+..|..+++|-+|+||++++.... .++.+ .+.+..|.+|++..+..+..++-....+++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchH-HHHHHhhheeccccccccccccchhhhccc
Confidence 455677777777766422333466777777777777554433 23333 445666666666655444444222234677
Q ss_pred CceeeeccCc--ccCCCCccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCA--YLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~--~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|++|.+.... .....-..+.++.+|+.+.++...
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 7777774332 111222244556666666665544
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.60 E-value=5.1e-06 Score=60.95 Aligned_cols=60 Identities=23% Similarity=0.148 Sum_probs=26.8
Q ss_pred ccccEEeccCCCCCc----cEEEcCCCCCCCceeeeccCcccCC----CCccC-CCCCCCCEEEecCCc
Q 045889 60 PELKVLNLKSMYWLD----EWTMGAGAMPKLESLIANPCAYLRK----LPKEL-WCVKSLCKLDLHWPQ 119 (145)
Q Consensus 60 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~----lp~~l-~~l~~L~~L~l~~~~ 119 (145)
++|+.|+++++.-.. .+......+++|+.|.+.+|..... +...+ ...+.|++|++.+|.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 456666665543110 1111222455667776666543210 11111 013566677766664
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.59 E-value=4.3e-06 Score=61.27 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=49.6
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCC--CccEEE---------
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYW--LDEWTM--------- 78 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~--------- 78 (145)
..|+.++|++|.+++.. .+..-+|.++.|+++.|.... .-. ...+++|..|+++++.. ...|..
T Consensus 284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~---v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRT---VQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchhhhh-hhhhhccceeEEeccccceee---ehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 45566666666555433 344445666666666554322 011 23355555665554321 111111
Q ss_pred ----------cCCCCCCCceeeeccCcccCCCCc--cCCCCCCCCEEEecCCc
Q 045889 79 ----------GAGAMPKLESLIANPCAYLRKLPK--ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 79 ----------~~~~~~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~ 119 (145)
+.+.+-+|..|++.++. .+.+.. +||++++|+.+.+.++|
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 11223344555554432 222222 56777777777776664
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.58 E-value=3.4e-05 Score=64.32 Aligned_cols=106 Identities=29% Similarity=0.325 Sum_probs=72.2
Q ss_pred CCCcEEEEeccc--CCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCc
Q 045889 10 PILTDLSLSNTE--LMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLE 87 (145)
Q Consensus 10 ~~L~~L~L~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 87 (145)
+.|+.|-+..|. +.......+..+|.|+.||+++|. .+..++-+ .+.+-+|++|++.++ .+..+|.+.+.+.+|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 467777777764 443343456678888888886543 33344444 556778888888765 4667777777788888
Q ss_pred eeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 88 SLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+|++.....+..+|.....+++|++|.+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 8888766666666555555888888887654
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.50 E-value=7.3e-06 Score=64.29 Aligned_cols=111 Identities=23% Similarity=0.205 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC----------
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY---------- 71 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------- 71 (145)
+|..+.++..|++++|+.|+++-.+ ..++.|| |+.|.++.|....-... .+..+.|..|+.+.|+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lp-Lkvli~sNNkl~~lp~~---ig~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLP-DGLCDLP-LKVLIVSNNKLTSLPEE---IGLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCC-hhhhcCc-ceeEEEecCccccCCcc---cccchhHHHhhhhhhhhhhchHHhhh
Confidence 5566667777777777777765444 3455554 66666665544321111 1234444444444331
Q ss_pred ------------CCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 72 ------------WLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 72 ------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.+..++.+.. --.|..|++ .|+++..||..+.+|+.|++|-|.++|
T Consensus 188 l~slr~l~vrRn~l~~lp~El~-~LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELC-SLPLIRLDF-SCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHh-CCceeeeec-ccCceeecchhhhhhhhheeeeeccCC
Confidence 1233333333 224556666 456777899999999999999999886
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.49 E-value=0.00015 Score=59.61 Aligned_cols=98 Identities=24% Similarity=0.191 Sum_probs=60.7
Q ss_pred CCCcEEEEecccCCCCCchhccC-----------------CCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCC
Q 045889 10 PILTDLSLSNTELMEDPMPMMEK-----------------LPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYW 72 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~-----------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 72 (145)
.+|++|++++|.++..+. ...+ .++|+.|++++|.+.. ++ ...++|+.|+++++.
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~-lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~--LP----~l~s~L~~LdLS~N~- 413 (788)
T PRK15387 342 SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS--LP----VLPSELKELMVSGNR- 413 (788)
T ss_pred cccceEecCCCccCCCCC-CCcccceehhhccccccCcccccccceEEecCCcccC--CC----CcccCCCEEEccCCc-
Confidence 478888888888775431 1100 1245555555554432 11 123467777777654
Q ss_pred CccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 73 LDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 73 ~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+..+|. ...+|+.|.+.+| .++.+|..+.++++|+.+++++|+
T Consensus 414 LssIP~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 414 LTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCCc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 444442 2346777777664 467899999999999999999986
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=6.5e-06 Score=62.60 Aligned_cols=87 Identities=23% Similarity=0.172 Sum_probs=52.9
Q ss_pred CCCCCCcEEEEecccCCCCC--chhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCC-CccEEEcCCCC
Q 045889 7 QFPPILTDLSLSNTELMEDP--MPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYW-LDEWTMGAGAM 83 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~ 83 (145)
..+++++.|+|+.|-+.... ......||+|+.|.++.|.+.-..-... ...++.|+.|.+.+|.- +..+-.....+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 45788888888888655432 2445689999999998887543111111 23488999999988752 23332233345
Q ss_pred CCCceeeeccC
Q 045889 84 PKLESLIANPC 94 (145)
Q Consensus 84 ~~L~~L~l~~~ 94 (145)
|.|+.|.+..+
T Consensus 222 Psl~~L~L~~N 232 (505)
T KOG3207|consen 222 PSLEVLYLEAN 232 (505)
T ss_pred CcHHHhhhhcc
Confidence 55555555443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.45 E-value=2.7e-05 Score=57.18 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=42.4
Q ss_pred hhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCceeeeccCc
Q 045889 28 PMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCA 95 (145)
Q Consensus 28 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 95 (145)
..+.....|+.+++++|..+. +.-+ ..-.|.++.|+++++. +..+ -....+++|..|+++++.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~--iDES-vKL~Pkir~L~lS~N~-i~~v-~nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQ--IDES-VKLAPKLRRLILSQNR-IRTV-QNLAELPQLQLLDLSGNL 340 (490)
T ss_pred EecchHhhhhhccccccchhh--hhhh-hhhccceeEEeccccc-eeee-hhhhhcccceEeecccch
Confidence 445667889999999987654 2222 3457999999998753 3222 224467788888887653
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.41 E-value=0.00019 Score=58.99 Aligned_cols=100 Identities=20% Similarity=0.167 Sum_probs=56.1
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEE-----------------EecCCCCccccEEeccCCCC
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLA-----------------CVGSGGFPELKVLNLKSMYW 72 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------------~~~~~~~~~L~~L~l~~~~~ 72 (145)
.+|+.|++++|.+...+ ..+. ++|++|++++|.+..-... .+ ...+++|+.|++.++.
T Consensus 262 s~L~~L~Ls~N~L~~LP-~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~- 336 (754)
T PRK15370 262 SALQSLDLFHNKISCLP-ENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALP-ETLPPGLKTLEAGENA- 336 (754)
T ss_pred CCCCEEECcCCccCccc-cccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCC-ccccccceeccccCCc-
Confidence 46788888887776543 2222 4677888777765431100 00 0123456666666543
Q ss_pred CccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 73 LDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 73 ~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+..++.. ..++|+.|.+.+|. +..+|..+. ++|+.|++++|.
T Consensus 337 Lt~LP~~--l~~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~ 378 (754)
T PRK15370 337 LTSLPAS--LPPELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNA 378 (754)
T ss_pred cccCChh--hcCcccEEECCCCC-CCcCChhhc--CCcCEEECCCCc
Confidence 3333321 22577777777654 445666542 577888887763
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00041 Score=53.18 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=59.8
Q ss_pred CCCCCcEEEEecccCCCCCchhccCC-CCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKL-PRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 86 (145)
.+.+++.|++++|.++..| .+ ++|+.|.++++.... .++. .-.++|++|.+.+|..+..+| +.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLt-sLP~---~LP~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLT-TLPG---SIPEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcc-cCCc---hhhhhhhheEccCcccccccc------ccc
Confidence 3578999999999776554 23 369999996533211 1111 123578999998876665443 245
Q ss_pred ceeeecc--CcccCCCCccCCCC------------------CCCCEEEecCCc
Q 045889 87 ESLIANP--CAYLRKLPKELWCV------------------KSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~--~~~l~~lp~~l~~l------------------~~L~~L~l~~~~ 119 (145)
+.|.+.. |..++.+|.++..| ++|+.|.+++|.
T Consensus 115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred ceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 5555543 23355666655443 378888888775
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.29 E-value=0.00085 Score=55.39 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeeccccc
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYL 47 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 47 (145)
++|+.|++.+|.++..+. .+++|++|++++|.+.
T Consensus 222 ~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT 255 (788)
T ss_pred cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC
Confidence 467777777777765431 2467778887777654
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.18 E-value=0.0005 Score=35.92 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.++ .+..+|..++++++|+.|++++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 35666666654 344566667777777777777765
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.84 E-value=8e-06 Score=65.87 Aligned_cols=105 Identities=24% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCc
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLE 87 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 87 (145)
.++.|+.|+|+.|++... +.+-.++.|+.|||+.|++.. ...++ ..++. |..|.+.+++ +..+ -+...+.+|+
T Consensus 185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~-~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLS-MVGCK-LQLLNLRNNA-LTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccc-hhhhh-heeeeecccH-HHhh-hhHHhhhhhh
Confidence 445566666666655432 245556666666666555543 12222 12222 5555555442 2222 1223455555
Q ss_pred eeeeccCcccCCC-CccCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKL-PKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~ 119 (145)
.|+++.|-..+.- -..+..+.+|++|++.++|
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555543211100 0123345556666666654
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.78 E-value=0.0029 Score=44.06 Aligned_cols=105 Identities=24% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC--CCccEEEcCCCCCCCc
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY--WLDEWTMGAGAMPKLE 87 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~ 87 (145)
.+...++|++|.+.. .+.+..++.|..|.+..|....-.... ...+|+|+.|.+.+++ .++.+. ....+|+|+
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNSIQELGDLD-PLASCPKLE 116 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccch--hhhccccceEEecCcchhhhhhcc-hhccCCccc
Confidence 455667888886543 245777888999999777654322222 2458899999998653 223321 234788999
Q ss_pred eeeeccCcccCC--CCc-cCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRK--LPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~--lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+|.+.+++.... .-. -+-.+++|+.|+.....
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999988753211 111 35668999999999875
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.74 E-value=1.3e-05 Score=62.98 Aligned_cols=105 Identities=21% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCc
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLE 87 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 87 (145)
.+..|..+.+..|++... +..++++..|.+++++.|....-....- .+ -|+.|-+.++ ++..+|.+.|..+.|.
T Consensus 96 ~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~lp~~lC---~l-pLkvli~sNN-kl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHLPDGLC---DL-PLKVLIVSNN-KLTSLPEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcCChhhh---cC-cceeEEEecC-ccccCCcccccchhHH
Confidence 334455555666655433 3567788888888888777654221111 13 3667766643 5777777788778888
Q ss_pred eeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.|....| .+..+|..++++.+|+.|.+..+.
T Consensus 170 ~ld~s~n-ei~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 170 HLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred Hhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh
Confidence 8888654 466788888888888888876653
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.59 E-value=0.00052 Score=52.13 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=5.7
Q ss_pred cCCCCCCEEEeecc
Q 045889 31 EKLPRPQVLKLKQN 44 (145)
Q Consensus 31 ~~l~~L~~L~l~~~ 44 (145)
..+++|+.|+++.|
T Consensus 160 ~~l~~L~~L~l~~N 173 (394)
T COG4886 160 RNLPNLKNLDLSFN 173 (394)
T ss_pred hccccccccccCCc
Confidence 33444444444333
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.58 E-value=3.3e-05 Score=62.47 Aligned_cols=100 Identities=27% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCceee
Q 045889 11 ILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESLI 90 (145)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 90 (145)
.|...+.+.|.+.-.+ .++.-+++|++|+|++|.+..-. . ...++.|+.|+++.+. +..+|.-...-.+|..|.
T Consensus 165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~--Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--N--LRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--H--HHhcccccccccccch-hccccccchhhhhheeee
Confidence 4555566667664332 56778899999999999886532 1 3458999999999653 555543222223588899
Q ss_pred eccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 91 ANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 91 l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+++|. ++.+ .+|.++++|+.|+++.+
T Consensus 239 lrnN~-l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 239 LRNNA-LTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred ecccH-HHhh-hhHHhhhhhhccchhHh
Confidence 97754 3333 47899999999999876
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.58 E-value=0.0007 Score=51.43 Aligned_cols=110 Identities=23% Similarity=0.249 Sum_probs=60.1
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC-----------
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY----------- 71 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------- 71 (145)
|..+..+++|+.|++.+|.+...+ ...+.+++|..|++++|.+..-... ......|+++.+.++.
T Consensus 156 ~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l~~~---~~~~~~L~~l~~~~N~~~~~~~~~~~~ 231 (394)
T COG4886 156 PSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPPE---IELLSALEELDLSNNSIIELLSSLSNL 231 (394)
T ss_pred hhhhhccccccccccCCchhhhhh-hhhhhhhhhhheeccCCccccCchh---hhhhhhhhhhhhcCCcceecchhhhhc
Confidence 345677888888888888776543 3333778888888887765431100 0112224444444331
Q ss_pred -----------CCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 72 -----------WLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 72 -----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.+...+-..+.++.++.|.+.+ +.+..++. ++.+.+++.++++++
T Consensus 232 ~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 232 KNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccCCceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 1111122333455566666644 33444444 666677777777665
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.57 E-value=8.8e-05 Score=56.10 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=47.0
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT 77 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 77 (145)
++.-+.++|..|+++..|...++.+++|+.|+|+.|.+.. +......++++|..|.+.+...+..++
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~--I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF--IAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhh--cChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 4567788999999988888889999999999998887643 111113356666666666544555554
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.48 E-value=0.00068 Score=51.47 Aligned_cols=62 Identities=26% Similarity=0.154 Sum_probs=35.2
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSM 70 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 70 (145)
..+++|+.|+|++|++++....++..+..++.|+|..|.+..-. .....++..|++|++.++
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~--~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS--SGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH--HHhhhccccceeeeecCC
Confidence 45666777777777666655556666666777766655542210 000234556666666654
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.47 E-value=0.0019 Score=52.88 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecccCCCCCchh-ccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE--EcCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPM-MEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT--MGAGAMP 84 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~ 84 (145)
.+|+|+.|.+.+-.+..+.... ..++|+|.+||+++.+.+. . .+ ...+++|+.|.+.+..- +... ...-.+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~G-IS~LknLq~L~mrnLe~-e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SG-ISRLKNLQVLSMRNLEF-ESYQDLIDLFNLK 220 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HH-HhccccHHHHhccCCCC-CchhhHHHHhccc
Confidence 5799999999998876655433 3489999999998766543 1 22 45688888887765532 2110 1233688
Q ss_pred CCceeeeccCcccCC--CCc----cCCCCCCCCEEEecCCc--HHHHHhc
Q 045889 85 KLESLIANPCAYLRK--LPK----ELWCVKSLCKLDLHWPQ--TELRQGL 126 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~--lp~----~l~~l~~L~~L~l~~~~--~~~~~~~ 126 (145)
+|+.|++++-..... +.. --..++.|+.|+.++.. +++.+.+
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 999999975433211 111 01237899999998764 4444443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00091 Score=49.23 Aligned_cols=110 Identities=18% Similarity=0.098 Sum_probs=65.2
Q ss_pred CCCCCcEEEEecccCCCC--CchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC-CCccEEEcCCCCC
Q 045889 8 FPPILTDLSLSNTELMED--PMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY-WLDEWTMGAGAMP 84 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 84 (145)
..+.++.++|.+|.++.. ....+.+||+|++|+++.|++..+.-..+ ....+|+.|.+.+.+ .+..+......+|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 356777888888877642 22346689999999998888765321110 124578888886543 2233333344677
Q ss_pred CCceeeeccCcccCCC--Cc-cCCCC-CCCCEEEecCCcH
Q 045889 85 KLESLIANPCAYLRKL--PK-ELWCV-KSLCKLDLHWPQT 120 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~l--p~-~l~~l-~~L~~L~l~~~~~ 120 (145)
+++.|.++.++. +.+ .+ .++.. +.++.+....|+.
T Consensus 147 ~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 147 KVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLE 185 (418)
T ss_pred hhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHH
Confidence 888887776532 111 11 22222 3667777777763
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.99 E-value=0.002 Score=49.18 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=60.1
Q ss_pred CCCcEEEEeccc-CCCCCchhcc-CCCCCCEEEeecccccCcE-EEEecCCCCccccEEeccCCCCCcc---EEEc--CC
Q 045889 10 PILTDLSLSNTE-LMEDPMPMME-KLPRPQVLKLKQNSYLGRK-LACVGSGGFPELKVLNLKSMYWLDE---WTMG--AG 81 (145)
Q Consensus 10 ~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~--~~ 81 (145)
.+|+.|.+..|+ ++......++ +.+.|+.|++-......+. +... ...++.|+.|.++.|+.... ..+. ..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 455555555552 3322233333 4455555555322221111 1111 23467777777775543321 1122 23
Q ss_pred CCCCCceeeeccCcccC-CCCccCCCCCCCCEEEecCCcHHHHHhccc
Q 045889 82 AMPKLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQTELRQGLRT 128 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 128 (145)
.+..++.+.+.+|+.+. +.-..+.+.++|+.+++..|...+++.++.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 46677777777777642 233355666788888888887656555544
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.00076 Score=49.64 Aligned_cols=111 Identities=21% Similarity=0.170 Sum_probs=73.4
Q ss_pred CCCCCCCcEEEEecccCCCCCchh-ccCC-CCCCEEEeecccccC--cEEEEecCCCCccccEEeccCCCCCcc-EEEcC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPM-MEKL-PRPQVLKLKQNSYLG--RKLACVGSGGFPELKVLNLKSMYWLDE-WTMGA 80 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~-l~~l-~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~ 80 (145)
+.+++.|..|.|++|.+..+.... +... ++|..|++++....- ..+..- ...+|+|..|+++++..+.. .....
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHH
Confidence 457889999999999876654322 2222 668888887653211 111111 24589999999998765543 22223
Q ss_pred CCCCCCceeeeccCcccCCCCc---cCCCCCCCCEEEecCCc
Q 045889 81 GAMPKLESLIANPCAYLRKLPK---ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~lp~---~l~~l~~L~~L~l~~~~ 119 (145)
-.|+.|++|.+.+|..+ +|. .+...++|.+|++.+|.
T Consensus 335 ~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 46789999999888643 233 56778899999999985
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.0055 Score=43.94 Aligned_cols=105 Identities=27% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCc-EEEEecCCCCccccEEeccCCCCCccEE--EcCCCCCC
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGR-KLACVGSGGFPELKVLNLKSMYWLDEWT--MGAGAMPK 85 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~ 85 (145)
+..|+.+.+.++.++.. ..+-.||+|++|.++.|.+... .+.+. ...+|+|+++.+++++ +..+. -....+++
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNK-IKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCc-cccccccchhhhhcc
Confidence 44556666666655422 3455677888888877733221 23333 4456888888887654 22111 11224556
Q ss_pred CceeeeccCcccCCCCc----cCCCCCCCCEEEecCC
Q 045889 86 LESLIANPCAYLRKLPK----ELWCVKSLCKLDLHWP 118 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~~ 118 (145)
|..|.+..|.... +-. -+.-+++|++|+-...
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 6666676665433 211 1233566666665543
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.91 E-value=0.031 Score=43.11 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=19.5
Q ss_pred CCCCCcEEEEeccc-CCCCCchhccCCCCCCEEEeecc
Q 045889 8 FPPILTDLSLSNTE-LMEDPMPMMEKLPRPQVLKLKQN 44 (145)
Q Consensus 8 ~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~~~ 44 (145)
.+++|+.|++++|. ++..+ ..+ .++|++|++++|
T Consensus 70 LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 70 LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCc
Confidence 45578888887763 33222 222 246777777654
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.90 E-value=0.017 Score=40.36 Aligned_cols=87 Identities=22% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCc-EEEEecCCCCccccEEeccCCCCCcc---EEEcCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGR-KLACVGSGGFPELKVLNLKSMYWLDE---WTMGAG 81 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~ 81 (145)
+..++.|..|.+.+|.++...+.--..+|+|..|.+.+|+...- .+. + ...+|.|++|.+-+++.-.. --+-.-
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-P-LASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-h-hccCCccceeeecCCchhcccCceeEEEE
Confidence 45567888899999988765543334678899999987765321 111 1 34688888888876542111 112223
Q ss_pred CCCCCceeeeccC
Q 045889 82 AMPKLESLIANPC 94 (145)
Q Consensus 82 ~~~~L~~L~l~~~ 94 (145)
.+|+|+.|++.+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 5778888887643
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.69 E-value=0.00014 Score=47.72 Aligned_cols=103 Identities=25% Similarity=0.174 Sum_probs=64.7
Q ss_pred CcEEEEecccCCCC--CchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCcee
Q 045889 12 LTDLSLSNTELMED--PMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESL 89 (145)
Q Consensus 12 L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 89 (145)
+..++|++|.+... .+..+.....|...++++|.+..-...+. ..||.++.|.+..+ ++..+|.+..+||.|+.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft--~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT--IKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh--hccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 44567777765422 22445667778888888887754211222 35778888888764 477778777888889998
Q ss_pred eeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 90 IANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 90 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+++.++ +...|..+..+.++-.|+..++
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 887765 3445554444555555554443
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.00025 Score=51.65 Aligned_cols=112 Identities=25% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC--CCccEEEcCCCCCCC
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY--WLDEWTMGAGAMPKL 86 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L 86 (145)
+.+.+.|..++|.++. .....+++.|+.|.|+.|..+. ..+ ...+.+|+.|++..+. .+.++ +-...+|+|
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIss-L~p---l~rCtrLkElYLRkN~I~sldEL-~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISS-LAP---LQRCTRLKELYLRKNCIESLDEL-EYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeecccccc-chh---HHHHHHHHHHHHHhcccccHHHH-HHHhcCchh
Confidence 4567788899988753 2445689999999999887754 222 2358889999887542 22222 223478999
Q ss_pred ceeeeccCcccCCCCc-----cCCCCCCCCEEEecCCc-HHHHHhcc
Q 045889 87 ESLIANPCAYLRKLPK-----ELWCVKSLCKLDLHWPQ-TELRQGLR 127 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~-----~l~~l~~L~~L~l~~~~-~~~~~~~~ 127 (145)
+.|.+..++..+.-+. .+.-+++|++|+=-... +++.++++
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr 137 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALR 137 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHh
Confidence 9999987765544333 25567888888754443 45555554
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.52 E-value=0.0037 Score=48.09 Aligned_cols=106 Identities=22% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+.+|..|++.+|.+.... ..++.+++|++|+++.|.... ... ...++.|+.|++.++. +..+ .....++.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~-i~~---l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITK-LEG---LSTLTLLKELNLSGNL-ISDI-SGLESLKS 163 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheecccccccc-ccc---hhhccchhhheeccCc-chhc-cCCccchh
Confidence 455677888888888775432 126778888888887776544 111 2346667777777653 3322 12223666
Q ss_pred CceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
|+.+.+.++.. ..+... +.++.+++.+++.++.
T Consensus 164 L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 164 LKLLDLSYNRI-VDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hhcccCCcchh-hhhhhhhhhhccchHHHhccCCc
Confidence 77777765432 222221 3566677777776664
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.46 E-value=0.0087 Score=42.95 Aligned_cols=89 Identities=21% Similarity=0.135 Sum_probs=54.0
Q ss_pred CCCCCCCcEEEEecc--cCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE---cC
Q 045889 6 YQFPPILTDLSLSNT--ELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM---GA 80 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~ 80 (145)
+..+++|++|.++.| +..+.-.....++|+|+++.+++|....-...-. ...+++|..|++..|..-..-.. ..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHHHH
Confidence 446789999999999 4333221223367999999999988764111111 34577788888877653221000 11
Q ss_pred CCCCCCceeeeccCc
Q 045889 81 GAMPKLESLIANPCA 95 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~ 95 (145)
..+|+|.+|.-.+..
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 246777777665543
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.0092 Score=44.13 Aligned_cols=85 Identities=24% Similarity=0.212 Sum_probs=57.0
Q ss_pred CCCcEEEEeccc--CCCCCchhcc-CCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCc-cEEEcCCCCCC
Q 045889 10 PILTDLSLSNTE--LMEDPMPMME-KLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLD-EWTMGAGAMPK 85 (145)
Q Consensus 10 ~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 85 (145)
++|+.|.|+++. +.......+. +.|+|..|||+.+.-..+..... ...|+.|++|.+++|+.+. ......+.+|.
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence 567788888884 2222233333 78999999998765332211111 3468999999999998764 33356678999
Q ss_pred CceeeeccCc
Q 045889 86 LESLIANPCA 95 (145)
Q Consensus 86 L~~L~l~~~~ 95 (145)
|.+|++.+|-
T Consensus 365 l~yLdv~g~v 374 (419)
T KOG2120|consen 365 LVYLDVFGCV 374 (419)
T ss_pred eEEEEecccc
Confidence 9999998774
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.06 E-value=0.028 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=12.3
Q ss_pred CCceeeeccCcccCCCCccCCC
Q 045889 85 KLESLIANPCAYLRKLPKELWC 106 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~ 106 (145)
+|+.|++++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3566677666 34466666544
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.0029 Score=43.93 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=15.3
Q ss_pred CcEEEEecccCCCCCchhccCCCCCCEEEee
Q 045889 12 LTDLSLSNTELMEDPMPMMEKLPRPQVLKLK 42 (145)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 42 (145)
++.++=+++.+..+.+..+.+++.++.|.+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~ 133 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLA 133 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheec
Confidence 3344444444444444455555555555553
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.92 E-value=0.032 Score=22.83 Aligned_cols=13 Identities=46% Similarity=0.508 Sum_probs=6.1
Q ss_pred CCcEEEEecccCC
Q 045889 11 ILTDLSLSNTELM 23 (145)
Q Consensus 11 ~L~~L~L~~~~l~ 23 (145)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666553
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.78 E-value=0.016 Score=44.61 Aligned_cols=82 Identities=18% Similarity=0.057 Sum_probs=55.1
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 84 (145)
+..+++|++|++++|.++.. ..+..++.|+.|++.+|.+..-. . ...++.|+.+++.++.. ..+... ...+.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~-~---~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~ 186 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS-G---LESLKSLKLLDLSYNRI-VDIENDELSELI 186 (414)
T ss_pred hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc-C---CccchhhhcccCCcchh-hhhhhhhhhhcc
Confidence 45689999999999988654 46788888999999988875511 1 22367778888876542 222111 24566
Q ss_pred CCceeeeccC
Q 045889 85 KLESLIANPC 94 (145)
Q Consensus 85 ~L~~L~l~~~ 94 (145)
+++.+.+.++
T Consensus 187 ~l~~l~l~~n 196 (414)
T KOG0531|consen 187 SLEELDLGGN 196 (414)
T ss_pred chHHHhccCC
Confidence 6776666554
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=0.0019 Score=47.23 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-----cCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-----GAG 81 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~ 81 (145)
..++.|++|.|+-|.++.. ..+..++.|+.|+|+-|++..-....- ..++|+|+.|++..+...+.-.. -.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 3578899999999987653 467888999999998887654211111 35789999999986654332111 011
Q ss_pred CCCCCceeee
Q 045889 82 AMPKLESLIA 91 (145)
Q Consensus 82 ~~~~L~~L~l 91 (145)
.+|+|++|+=
T Consensus 115 ~LPnLkKLDn 124 (388)
T KOG2123|consen 115 VLPNLKKLDN 124 (388)
T ss_pred HcccchhccC
Confidence 4677777643
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.0068 Score=42.12 Aligned_cols=64 Identities=17% Similarity=0.066 Sum_probs=37.3
Q ss_pred CCCCCCcEEEEecc-cCCCCCchhccC-CCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC
Q 045889 7 QFPPILTDLSLSNT-ELMEDPMPMMEK-LPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY 71 (145)
Q Consensus 7 ~~l~~L~~L~L~~~-~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 71 (145)
..++.++.|.+.+| ++....++-++. .++|+.|++++|....+.-... ...|++|+.|.+.+..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCch
Confidence 45677777888887 344334444443 3778888887665433221111 2356777777776544
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.36 E-value=0.051 Score=40.84 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=6.3
Q ss_pred CCCCCEEEecCC
Q 045889 107 VKSLCKLDLHWP 118 (145)
Q Consensus 107 l~~L~~L~l~~~ 118 (145)
.+.|++|++++|
T Consensus 297 k~dL~kLnLngN 308 (382)
T KOG1909|consen 297 KPDLEKLNLNGN 308 (382)
T ss_pred chhhHHhcCCcc
Confidence 445555555555
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.28 E-value=0.0079 Score=45.01 Aligned_cols=13 Identities=38% Similarity=0.651 Sum_probs=6.5
Q ss_pred CCCcEEEEecccC
Q 045889 10 PILTDLSLSNTEL 22 (145)
Q Consensus 10 ~~L~~L~L~~~~l 22 (145)
+.|++|+|++|-+
T Consensus 92 ~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 92 PKLQKLDLSDNAF 104 (382)
T ss_pred CceeEeecccccc
Confidence 3555555555544
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.88 E-value=0.21 Score=22.48 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=12.3
Q ss_pred CCCCcEEEEecccCCCCCch
Q 045889 9 PPILTDLSLSNTELMEDPMP 28 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~ 28 (145)
+++|+.|+|.+|.+...+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777766655433
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.88 E-value=0.21 Score=22.48 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=12.3
Q ss_pred CCCCcEEEEecccCCCCCch
Q 045889 9 PPILTDLSLSNTELMEDPMP 28 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~ 28 (145)
+++|+.|+|.+|.+...+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777766655433
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.24 Score=36.95 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCCCCCCcEEEEecccCCCCCchhc-cCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMM-EKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSM 70 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 70 (145)
+.+++.|+.|.|+.|.+...+ ..+ ..+.+|+.|.|.+-.+.-...... ...+|.++.|.++.+
T Consensus 93 le~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhh-hhcchhhhhhhhccc
Confidence 457899999999999887544 333 355678888884332222222222 334666666655543
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.42 E-value=0.078 Score=35.06 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY 71 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 71 (145)
..+|+..+|++|.+...+...-.++|..+.+++.+|....-. .. ...+|.|+.+.+..+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP--eE-~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP--EE-LAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch--HH-HhhhHHhhhcccccCc
Confidence 457788899999998877555557788999999888776522 22 3468999999998664
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.03 E-value=0.035 Score=24.68 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=6.6
Q ss_pred CCCcEEEEecccCC
Q 045889 10 PILTDLSLSNTELM 23 (145)
Q Consensus 10 ~~L~~L~L~~~~l~ 23 (145)
++|+.|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666665543
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.88 E-value=0.23 Score=38.44 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCCcEEEEecccC-CCCCchhcc-CCCCCCEEEeecccc-cCcEEEEecCCCCccccEEeccCCCCCc--cEEEcCCCC
Q 045889 9 PPILTDLSLSNTEL-MEDPMPMME-KLPRPQVLKLKQNSY-LGRKLACVGSGGFPELKVLNLKSMYWLD--EWTMGAGAM 83 (145)
Q Consensus 9 l~~L~~L~L~~~~l-~~~~~~~l~-~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 83 (145)
+..|++|+.++|.. +......++ +.++|+++.+..+.. +...+..- ..+.+.|+.+++..+...- .+..-.-..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45677788877743 222334454 668888888876653 22222222 3457888888887664321 121222356
Q ss_pred CCCceeeeccCcccCC-----CCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRK-----LPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~-----lp~~l~~l~~L~~L~l~~~~ 119 (145)
+.|+.+.+..|..... +...-.++..++.+.+.+||
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 7888888876654321 12223445678899999998
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.29 E-value=5.6 Score=24.75 Aligned_cols=104 Identities=8% Similarity=0.083 Sum_probs=48.1
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 83 (145)
.+..+.+|+.+.+.. .+.......+...++|+.+.+..+ ... +........++++.+.+.+ ....+.... ...
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc--cceeeeecccccccccccc--ccccccccccccc
Confidence 356677889888865 344434456778888999988643 221 1111023455778888854 333333222 235
Q ss_pred CCCceeeeccCcccCCCCc-cCCCCCCCCEEEecC
Q 045889 84 PKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHW 117 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~ 117 (145)
++++.+.+... +..++. .+.+. .++.+.+.+
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 67888887542 333434 34555 777777764
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.50 E-value=0.089 Score=40.58 Aligned_cols=110 Identities=26% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCCCcEEEEeccc-CCCCCc-hhccCCCCCCEEEeeccc-ccCcE---EEEecCCCCccccEEeccCCCCCccEE--EcC
Q 045889 9 PPILTDLSLSNTE-LMEDPM-PMMEKLPRPQVLKLKQNS-YLGRK---LACVGSGGFPELKVLNLKSMYWLDEWT--MGA 80 (145)
Q Consensus 9 l~~L~~L~L~~~~-l~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~ 80 (145)
.+.|+.+.+..+. +..... ......++|+.|+++.+. ..... .... ...+++|+.|++..+..+.... .-.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCchhHHHHH
Confidence 5677777777773 332222 344567888888876421 11100 0111 2345677777777554332221 111
Q ss_pred CCCCCCceeeeccCcccC--CCCccCCCCCCCCEEEecCCc
Q 045889 81 GAMPKLESLIANPCAYLR--KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~ 119 (145)
...++|+.|.+..|..+. .+-.....++.|++|+++.|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 235677777766665421 111123445667777777765
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.59 E-value=0.59 Score=36.05 Aligned_cols=9 Identities=56% Similarity=0.818 Sum_probs=3.7
Q ss_pred CCCcEEEEe
Q 045889 10 PILTDLSLS 18 (145)
Q Consensus 10 ~~L~~L~L~ 18 (145)
++|+.|+++
T Consensus 214 ~~L~~L~l~ 222 (482)
T KOG1947|consen 214 PNLEELDLS 222 (482)
T ss_pred chhheeccc
Confidence 344444443
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.42 E-value=2.1 Score=19.57 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=10.5
Q ss_pred CCCcEEEEecccCCCC
Q 045889 10 PILTDLSLSNTELMED 25 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~ 25 (145)
++|+.|..++|+++..
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4667777777766543
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=70.32 E-value=3.8 Score=18.23 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=5.0
Q ss_pred CCceeeeccCc
Q 045889 85 KLESLIANPCA 95 (145)
Q Consensus 85 ~L~~L~l~~~~ 95 (145)
+|+.|.+..|.
T Consensus 3 ~L~~L~l~~C~ 13 (26)
T smart00367 3 NLRELDLSGCT 13 (26)
T ss_pred CCCEeCCCCCC
Confidence 44444444443
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.41 E-value=3.5 Score=18.85 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=8.7
Q ss_pred CCCcEEEEecccCC
Q 045889 10 PILTDLSLSNTELM 23 (145)
Q Consensus 10 ~~L~~L~L~~~~l~ 23 (145)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666654
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.39 E-value=5 Score=18.23 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=7.4
Q ss_pred CCCcEEEEecccC
Q 045889 10 PILTDLSLSNTEL 22 (145)
Q Consensus 10 ~~L~~L~L~~~~l 22 (145)
.+|+.|++++|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666666554
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.59 E-value=3.2 Score=33.40 Aligned_cols=62 Identities=23% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCCCCcEEEEecccCCCCC-chhcc-CCCCCCEEEeecc--cccCcEEEEecCCCCccccEEeccCCC
Q 045889 8 FPPILTDLSLSNTELMEDP-MPMME-KLPRPQVLKLKQN--SYLGRKLACVGSGGFPELKVLNLKSMY 71 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~-~~~l~-~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~ 71 (145)
+.+.+..+.|++|+|.... +.++. .-|+|..|+|++| .... ..... .-+...|++|.+.+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~-K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELD-KLKGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhh-hhcCCCHHHeeecCCc
Confidence 4566777778888765432 23333 5578888888766 2211 11122 2234557777776654
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=48.70 E-value=16 Score=27.33 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=20.3
Q ss_pred CCCCCceeeeccCcccCCCCc----cCCCCCCCCEEEecCC
Q 045889 82 AMPKLESLIANPCAYLRKLPK----ELWCVKSLCKLDLHWP 118 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~~ 118 (145)
.+|+|+...++++.+....|. .|.+.+.|++|.+++|
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 345566666655554433333 3455566666666666
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.37 E-value=20 Score=34.64 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=17.6
Q ss_pred EecccCCCCCchhccCCCCCCEEEeecccc
Q 045889 17 LSNTELMEDPMPMMEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 17 L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 46 (145)
|++|+|...+...+..+++|+.|+|++|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 455555555555555666666666666554
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=39.73 E-value=20 Score=26.86 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCCCCCcEEEEecccCCCCCc----hhccCCCCCCEEEeeccc
Q 045889 6 YQFPPILTDLSLSNTELMEDPM----PMMEKLPRPQVLKLKQNS 45 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~l~~~~ 45 (145)
+..|++|+.++|++|.+....+ +.+++-+.|.+|.+.+|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4568899999999997754433 235667889999996554
No 83
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=31.30 E-value=17 Score=16.59 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=8.9
Q ss_pred hccCCCCCCEEEe
Q 045889 29 MMEKLPRPQVLKL 41 (145)
Q Consensus 29 ~l~~l~~L~~L~l 41 (145)
.+..+|+|++||.
T Consensus 8 Vi~~LPqL~~LD~ 20 (26)
T smart00446 8 VIRLLPQLRKLDX 20 (26)
T ss_pred HHHHCCccceecc
Confidence 3556777777765
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.65 E-value=24 Score=28.62 Aligned_cols=64 Identities=23% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCCCCEEEeecccccC-cEEEEecCCCCccccEEeccCCCCCc--cEEEcCCCCCCCceeeeccCcc
Q 045889 32 KLPRPQVLKLKQNSYLG-RKLACVGSGGFPELKVLNLKSMYWLD--EWTMGAGAMPKLESLIANPCAY 96 (145)
Q Consensus 32 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 96 (145)
+.|.+..+.++.|..-. +.+..- ...+|+|+.|+|+++.... ......-....|++|.+.+++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssl-sq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSL-SQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHH-HHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 56777777777665432 111111 2357888888887652111 1111122345667777766553
No 85
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=25.59 E-value=1e+02 Score=15.43 Aligned_cols=6 Identities=50% Similarity=0.523 Sum_probs=2.2
Q ss_pred ccEEec
Q 045889 62 LKVLNL 67 (145)
Q Consensus 62 L~~L~l 67 (145)
++.|.+
T Consensus 14 l~~L~~ 19 (44)
T PF05725_consen 14 LKSLIF 19 (44)
T ss_pred CeEEEE
Confidence 333333
Done!