Query 045889
Match_columns 145
No_of_seqs 118 out of 1713
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 7E-14 2.4E-18 102.4 8.4 108 8-119 181-288 (328)
2 4fcg_A Uncharacterized protein 99.5 1.8E-13 6.1E-18 100.3 9.1 111 3-116 199-309 (328)
3 3rgz_A Protein brassinosteroid 99.4 1.6E-14 5.4E-19 116.3 1.9 138 2-144 624-765 (768)
4 3e6j_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 90.7 9.1 113 3-119 57-170 (229)
5 2v70_A SLIT-2, SLIT homolog 2 99.4 1.6E-12 5.3E-17 90.2 7.7 112 5-119 52-164 (220)
6 2v9t_B SLIT homolog 2 protein 99.3 3.5E-12 1.2E-16 88.5 8.4 111 5-119 51-163 (220)
7 1ogq_A PGIP-2, polygalacturona 99.3 6.9E-13 2.4E-17 96.5 4.6 115 2-118 68-184 (313)
8 3m19_A Variable lymphocyte rec 99.3 9.4E-12 3.2E-16 87.7 9.5 109 7-119 80-190 (251)
9 4ezg_A Putative uncharacterize 99.3 2.1E-12 7.1E-17 88.0 5.7 110 5-119 61-170 (197)
10 3rfs_A Internalin B, repeat mo 99.3 1E-11 3.5E-16 88.5 9.4 112 5-119 104-216 (272)
11 1w8a_A SLIT protein; signaling 99.3 7.5E-12 2.6E-16 85.0 8.2 107 10-119 29-137 (192)
12 2o6s_A Variable lymphocyte rec 99.3 1.4E-11 4.9E-16 84.3 9.7 111 5-119 47-159 (208)
13 3rgz_A Protein brassinosteroid 99.3 2E-12 7E-17 104.0 5.9 112 5-118 437-548 (768)
14 1ogq_A PGIP-2, polygalacturona 99.3 1.2E-12 4.2E-17 95.2 4.2 114 2-118 93-207 (313)
15 1p9a_G Platelet glycoprotein I 99.3 1.3E-11 4.5E-16 88.9 9.5 114 2-119 92-206 (290)
16 3m19_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 86.4 9.2 111 5-119 54-166 (251)
17 4ezg_A Putative uncharacterize 99.3 9E-12 3.1E-16 84.8 7.5 103 10-118 44-146 (197)
18 3e6j_A Variable lymphocyte rec 99.3 1.8E-11 6.1E-16 85.3 8.9 107 9-119 39-146 (229)
19 2ell_A Acidic leucine-rich nuc 99.3 2.3E-12 7.8E-17 85.5 4.1 107 8-119 22-131 (168)
20 3v47_A TOLL-like receptor 5B a 99.3 8.9E-12 3.1E-16 94.2 7.8 114 2-119 291-406 (455)
21 1ozn_A Reticulon 4 receptor; N 99.3 2.1E-11 7.1E-16 87.2 9.0 40 6-45 101-140 (285)
22 2v9t_B SLIT homolog 2 protein 99.3 2.3E-11 7.8E-16 84.3 8.4 107 10-119 32-139 (220)
23 2z62_A TOLL-like receptor 4, v 99.3 1.3E-11 4.3E-16 88.0 7.3 113 5-119 47-160 (276)
24 1ozn_A Reticulon 4 receptor; N 99.3 1.4E-11 4.7E-16 88.1 7.4 113 3-119 122-236 (285)
25 3vq2_A TLR4, TOLL-like recepto 99.2 1.5E-11 5.2E-16 96.1 7.5 112 5-118 419-531 (606)
26 2z7x_B TOLL-like receptor 1, v 99.2 3.7E-11 1.3E-15 92.4 9.5 111 2-119 15-126 (520)
27 3vq2_A TLR4, TOLL-like recepto 99.2 1.6E-11 5.6E-16 95.9 7.6 113 4-119 50-164 (606)
28 3rfs_A Internalin B, repeat mo 99.2 3.5E-11 1.2E-15 85.7 8.4 109 7-119 82-192 (272)
29 2je0_A Acidic leucine-rich nuc 99.2 2E-12 6.8E-17 84.2 1.7 107 8-119 15-124 (149)
30 4g8a_A TOLL-like receptor 4; l 99.2 1.8E-11 6E-16 95.5 7.2 111 5-118 71-183 (635)
31 2o6q_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 84.4 9.3 108 8-119 107-216 (270)
32 4eco_A Uncharacterized protein 99.2 3.9E-12 1.3E-16 100.6 3.3 115 2-119 198-341 (636)
33 2o6r_A Variable lymphocyte rec 99.2 8.8E-11 3E-15 78.5 9.4 108 8-119 26-135 (177)
34 2z66_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 86.5 8.1 113 6-119 122-259 (306)
35 2z63_A TOLL-like receptor 4, v 99.2 4.1E-11 1.4E-15 92.8 8.5 113 5-119 416-529 (570)
36 2z81_A CD282 antigen, TOLL-lik 99.2 1.7E-11 5.9E-16 94.6 6.0 114 4-118 68-182 (549)
37 4g8a_A TOLL-like receptor 4; l 99.2 4.1E-11 1.4E-15 93.5 8.1 107 9-119 51-159 (635)
38 2o6q_A Variable lymphocyte rec 99.2 9.2E-11 3.1E-15 83.4 9.2 42 5-46 56-97 (270)
39 2wfh_A SLIT homolog 2 protein 99.2 1.1E-10 3.7E-15 79.5 9.1 106 9-119 30-137 (193)
40 2ell_A Acidic leucine-rich nuc 99.2 2.7E-11 9.2E-16 80.3 5.9 112 2-119 41-158 (168)
41 3zyi_A Leucine-rich repeat-con 99.2 3.8E-11 1.3E-15 91.1 7.0 42 5-46 94-135 (452)
42 2o6s_A Variable lymphocyte rec 99.2 1.7E-10 5.7E-15 78.9 9.4 108 8-119 26-135 (208)
43 2z63_A TOLL-like receptor 4, v 99.2 4.4E-11 1.5E-15 92.6 7.2 112 5-119 47-160 (570)
44 2z80_A TOLL-like receptor 2, v 99.2 3.2E-11 1.1E-15 88.7 6.0 115 4-119 94-209 (353)
45 3t6q_A CD180 antigen; protein- 99.2 6.4E-11 2.2E-15 92.5 8.0 114 2-117 293-409 (606)
46 2z66_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 86.1 6.7 94 2-97 167-261 (306)
47 3zyj_A Leucine-rich repeat-con 99.2 5.7E-11 2E-15 89.9 7.4 43 5-47 83-125 (440)
48 3v47_A TOLL-like receptor 5B a 99.2 3.7E-11 1.3E-15 90.8 6.3 113 5-119 49-165 (455)
49 2id5_A Lingo-1, leucine rich r 99.2 6E-11 2E-15 90.4 7.2 112 5-118 51-162 (477)
50 4b8c_D Glucose-repressible alc 99.2 2.4E-11 8.4E-16 97.5 5.0 111 3-119 217-327 (727)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.5E-10 5.3E-15 89.9 9.3 111 2-119 46-157 (562)
52 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-10 3.8E-15 80.9 7.6 108 9-119 31-140 (220)
53 2xot_A Amphoterin-induced prot 99.2 8.8E-11 3E-15 86.9 7.5 107 8-118 62-173 (361)
54 2je0_A Acidic leucine-rich nuc 99.1 1.3E-11 4.5E-16 80.2 2.7 110 2-117 34-149 (149)
55 4eco_A Uncharacterized protein 99.1 6.4E-12 2.2E-16 99.3 1.4 114 2-118 239-363 (636)
56 3j0a_A TOLL-like receptor 5; m 99.1 1.5E-10 5.1E-15 94.1 9.3 111 6-118 44-158 (844)
57 3oja_B Anopheles plasmodium-re 99.1 3.3E-11 1.1E-15 94.5 5.2 111 6-119 71-182 (597)
58 2z81_A CD282 antigen, TOLL-lik 99.1 2.7E-11 9.2E-16 93.6 4.5 112 5-118 45-158 (549)
59 1p9a_G Platelet glycoprotein I 99.1 2.2E-10 7.7E-15 82.4 8.1 103 10-118 31-134 (290)
60 2z62_A TOLL-like receptor 4, v 99.1 2E-10 6.7E-15 81.7 7.7 108 9-119 27-135 (276)
61 3o6n_A APL1; leucine-rich repe 99.1 2E-10 6.7E-15 85.5 7.6 110 7-119 66-176 (390)
62 3zyi_A Leucine-rich repeat-con 99.1 3.9E-10 1.3E-14 85.6 9.3 112 3-118 116-228 (452)
63 2z80_A TOLL-like receptor 2, v 99.1 5.9E-11 2E-15 87.3 4.7 110 6-118 72-184 (353)
64 2id5_A Lingo-1, leucine rich r 99.1 1.6E-10 5.5E-15 88.0 6.9 111 3-117 73-185 (477)
65 3zyj_A Leucine-rich repeat-con 99.1 3.8E-10 1.3E-14 85.4 8.8 44 4-47 106-149 (440)
66 4ecn_A Leucine-rich repeat pro 99.1 1.9E-11 6.5E-16 99.8 1.6 56 60-118 548-605 (876)
67 3oja_A Leucine-rich immune mol 99.1 8.7E-11 3E-15 90.3 5.2 109 5-119 139-248 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.1 6.8E-11 2.3E-15 85.9 4.4 109 5-119 139-248 (317)
69 1ziw_A TOLL-like receptor 3; i 99.1 1.9E-10 6.5E-15 91.0 7.1 110 6-118 45-155 (680)
70 2xwt_C Thyrotropin receptor; s 99.1 2.1E-10 7.1E-15 80.0 6.5 38 6-43 51-89 (239)
71 3t6q_A CD180 antigen; protein- 99.1 2.4E-10 8.1E-15 89.3 7.5 111 6-118 421-533 (606)
72 4ecn_A Leucine-rich repeat pro 99.1 4.1E-11 1.4E-15 97.8 3.2 114 2-119 481-630 (876)
73 2z7x_B TOLL-like receptor 1, v 99.1 2E-10 6.7E-15 88.3 6.9 115 2-119 340-479 (520)
74 3o6n_A APL1; leucine-rich repe 99.1 1.3E-10 4.4E-15 86.5 5.2 107 6-119 244-350 (390)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 6.9E-10 2.4E-14 86.3 9.3 115 2-119 369-508 (562)
76 1a9n_A U2A', U2A'; complex (nu 99.1 3.1E-11 1.1E-15 80.7 1.4 105 7-119 16-124 (176)
77 3j0a_A TOLL-like receptor 5; m 99.0 6.3E-10 2.2E-14 90.4 8.1 110 8-119 22-134 (844)
78 2ft3_A Biglycan; proteoglycan, 99.0 1.1E-09 3.8E-14 79.8 8.5 105 9-119 53-158 (332)
79 1a9n_A U2A', U2A'; complex (nu 99.0 4.2E-10 1.4E-14 75.2 5.8 109 7-121 39-153 (176)
80 2xot_A Amphoterin-induced prot 99.0 6.2E-10 2.1E-14 82.3 7.3 108 9-119 38-147 (361)
81 1xku_A Decorin; proteoglycan, 99.0 1E-09 3.6E-14 79.9 8.3 42 5-46 71-112 (330)
82 2xwt_C Thyrotropin receptor; s 99.0 7.5E-10 2.6E-14 77.2 7.0 107 8-118 29-140 (239)
83 1dce_A Protein (RAB geranylger 99.0 4.8E-10 1.6E-14 87.8 6.5 102 11-119 442-544 (567)
84 4glp_A Monocyte differentiatio 99.0 1.9E-10 6.6E-15 83.2 3.8 110 8-119 143-262 (310)
85 1ziw_A TOLL-like receptor 3; i 99.0 2.8E-09 9.4E-14 84.4 9.8 115 2-119 472-595 (680)
86 1xku_A Decorin; proteoglycan, 99.0 1.4E-09 4.8E-14 79.2 7.5 104 9-118 51-155 (330)
87 1wwl_A Monocyte differentiatio 99.0 3.7E-10 1.3E-14 81.9 4.3 110 8-118 93-211 (312)
88 3oja_B Anopheles plasmodium-re 99.0 1.9E-09 6.4E-14 84.6 8.4 110 3-118 92-202 (597)
89 1xeu_A Internalin C; cellular 99.0 2.7E-09 9.3E-14 75.7 8.3 103 5-118 58-160 (263)
90 1dce_A Protein (RAB geranylger 98.9 1.1E-09 3.9E-14 85.6 6.5 106 2-115 456-567 (567)
91 4fmz_A Internalin; leucine ric 98.9 3E-09 1E-13 77.7 8.2 104 6-118 62-165 (347)
92 1wwl_A Monocyte differentiatio 98.9 4.1E-10 1.4E-14 81.6 3.5 62 7-71 118-184 (312)
93 4fmz_A Internalin; leucine ric 98.9 8.7E-10 3E-14 80.6 5.3 106 6-119 217-322 (347)
94 1h6u_A Internalin H; cell adhe 98.9 2.3E-09 7.7E-14 77.7 7.4 80 6-93 59-138 (308)
95 3oja_A Leucine-rich immune mol 98.9 6.4E-10 2.2E-14 85.4 4.6 105 9-118 33-154 (487)
96 3o53_A Protein LRIM1, AGAP0063 98.9 8.4E-10 2.9E-14 80.1 4.8 107 9-119 119-225 (317)
97 1h6t_A Internalin B; cell adhe 98.9 3.2E-09 1.1E-13 76.4 7.6 38 7-46 65-102 (291)
98 1h6u_A Internalin H; cell adhe 98.9 3.1E-09 1E-13 77.0 7.4 103 6-118 81-183 (308)
99 1w8a_A SLIT protein; signaling 98.9 1.8E-09 6.2E-14 73.1 5.8 91 5-98 49-140 (192)
100 2ft3_A Biglycan; proteoglycan, 98.9 4.2E-09 1.4E-13 76.7 8.1 108 3-117 71-181 (332)
101 3g39_A Variable lymphocyte rec 98.9 4.3E-09 1.5E-13 70.0 7.4 101 12-119 11-113 (170)
102 2r9u_A Variable lymphocyte rec 98.9 3E-09 1E-13 71.1 6.7 100 13-119 15-116 (174)
103 1h6t_A Internalin B; cell adhe 98.9 3.7E-09 1.3E-13 76.0 7.4 104 6-119 86-189 (291)
104 2r9u_A Variable lymphocyte rec 98.9 7.8E-09 2.7E-13 69.1 7.7 91 2-97 27-118 (174)
105 2ast_B S-phase kinase-associat 98.9 7.3E-12 2.5E-16 91.2 -7.9 36 83-118 221-257 (336)
106 1m9s_A Internalin B; cell inva 98.9 3.5E-09 1.2E-13 83.5 6.4 36 8-45 63-98 (605)
107 3bz5_A Internalin-J, INLJ; leu 98.9 1.9E-08 6.5E-13 76.7 10.3 57 6-70 60-116 (457)
108 2wfh_A SLIT homolog 2 protein 98.9 3.2E-09 1.1E-13 72.1 5.3 92 2-96 46-138 (193)
109 1m9s_A Internalin B; cell inva 98.8 8.1E-09 2.8E-13 81.4 8.2 103 6-118 105-207 (605)
110 2o6r_A Variable lymphocyte rec 98.8 4.9E-09 1.7E-13 69.8 6.0 91 5-98 47-138 (177)
111 3bz5_A Internalin-J, INLJ; leu 98.8 2.8E-08 9.5E-13 75.8 10.6 56 6-69 81-136 (457)
112 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.6E-13 68.1 6.9 91 2-97 24-115 (170)
113 1o6v_A Internalin A; bacterial 98.8 7E-09 2.4E-13 78.9 6.5 106 6-118 261-385 (466)
114 1xeu_A Internalin C; cellular 98.8 1.1E-08 3.6E-13 72.7 6.9 103 6-119 81-183 (263)
115 2ast_B S-phase kinase-associat 98.8 1.4E-10 4.8E-15 84.4 -3.5 111 6-118 89-205 (336)
116 2ifg_A High affinity nerve gro 98.8 7.8E-09 2.7E-13 75.7 5.7 98 15-118 13-113 (347)
117 1ds9_A Outer arm dynein; leuci 98.8 1.6E-11 5.4E-16 83.7 -8.9 107 5-119 43-151 (198)
118 4glp_A Monocyte differentiatio 98.7 4.3E-09 1.5E-13 76.1 3.3 110 7-119 114-235 (310)
119 4ay9_X Follicle-stimulating ho 98.7 4.7E-08 1.6E-12 71.9 8.6 90 2-94 24-114 (350)
120 1o6v_A Internalin A; bacterial 98.7 2.5E-08 8.5E-13 75.9 7.3 104 5-118 238-341 (466)
121 4ay9_X Follicle-stimulating ho 98.7 5.4E-08 1.8E-12 71.5 8.6 113 6-119 75-213 (350)
122 4b8c_D Glucose-repressible alc 98.6 3.7E-09 1.3E-13 84.9 0.3 95 2-101 239-333 (727)
123 3g06_A SSPH2 (leucine-rich rep 98.6 1.6E-07 5.6E-12 74.2 9.0 75 34-119 221-295 (622)
124 3cvr_A Invasion plasmid antige 98.6 2.1E-07 7.3E-12 72.9 8.9 96 9-119 139-241 (571)
125 1jl5_A Outer protein YOPM; leu 98.6 5.4E-07 1.8E-11 68.6 10.2 99 10-118 131-247 (454)
126 3cvr_A Invasion plasmid antige 98.6 4.6E-07 1.6E-11 71.0 9.9 52 59-118 139-190 (571)
127 2ifg_A High affinity nerve gro 98.5 1.8E-07 6E-12 68.5 7.0 91 2-96 24-115 (347)
128 2ca6_A RAN GTPase-activating p 98.5 4.8E-10 1.6E-14 83.3 -8.4 40 7-46 91-134 (386)
129 1jl5_A Outer protein YOPM; leu 98.5 2.3E-07 7.9E-12 70.7 6.1 57 59-119 336-407 (454)
130 3g06_A SSPH2 (leucine-rich rep 98.5 1.5E-06 5.1E-11 68.8 10.6 51 10-70 61-111 (622)
131 1ds9_A Outer arm dynein; leuci 98.4 7.6E-10 2.6E-14 75.2 -7.5 104 5-114 65-180 (198)
132 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.5E-12 63.0 2.3 36 10-45 61-96 (176)
133 2ca6_A RAN GTPase-activating p 98.3 7.2E-08 2.4E-12 71.6 0.5 36 83-118 273-313 (386)
134 3goz_A Leucine-rich repeat-con 98.3 8.1E-09 2.8E-13 76.2 -5.3 66 6-71 18-91 (362)
135 2ra8_A Uncharacterized protein 98.2 1.3E-07 4.4E-12 70.2 0.1 110 9-119 192-318 (362)
136 3goz_A Leucine-rich repeat-con 98.0 4.8E-07 1.6E-11 66.7 -0.6 36 11-46 52-92 (362)
137 1z7x_W Ribonuclease inhibitor; 98.0 9.3E-08 3.2E-12 72.2 -4.9 86 9-95 27-124 (461)
138 3ogk_B Coronatine-insensitive 98.0 6.2E-07 2.1E-11 69.7 -1.0 61 59-119 462-524 (592)
139 2p1m_B Transport inhibitor res 98.0 5.5E-07 1.9E-11 69.9 -1.5 107 8-118 103-221 (594)
140 1z7x_W Ribonuclease inhibitor; 97.9 2.5E-07 8.5E-12 69.8 -4.2 110 8-119 54-181 (461)
141 2p1m_B Transport inhibitor res 97.9 4.3E-07 1.5E-11 70.6 -3.1 38 9-46 129-168 (594)
142 3ogk_B Coronatine-insensitive 97.8 5.5E-06 1.9E-10 64.3 1.4 40 8-47 162-205 (592)
143 2ra8_A Uncharacterized protein 97.6 3.9E-06 1.3E-10 62.3 -1.7 109 8-119 170-290 (362)
144 3sb4_A Hypothetical leucine ri 97.6 0.00021 7.3E-09 51.7 7.4 101 9-115 225-328 (329)
145 3rw6_A Nuclear RNA export fact 97.6 9.2E-06 3.2E-10 57.9 -0.2 30 85-114 221-257 (267)
146 3un9_A NLR family member X1; l 97.5 4.6E-07 1.6E-11 67.4 -8.4 109 10-119 101-222 (372)
147 3un9_A NLR family member X1; l 97.4 2.9E-06 9.8E-11 63.1 -5.1 110 9-119 125-250 (372)
148 3e4g_A ATP synthase subunit S, 97.4 2.7E-05 9.2E-10 52.1 0.1 67 6-74 81-153 (176)
149 1io0_A Tropomodulin; LRR prote 96.9 1.8E-05 6E-10 53.1 -4.5 114 6-119 32-162 (185)
150 3sb4_A Hypothetical leucine ri 96.8 0.0038 1.3E-07 45.1 7.2 36 9-45 100-135 (329)
151 3rw6_A Nuclear RNA export fact 96.8 0.00067 2.3E-08 48.3 2.6 11 109-119 221-231 (267)
152 3rfe_A Platelet glycoprotein I 96.4 0.0026 8.8E-08 40.2 3.4 38 9-46 30-67 (130)
153 4fdw_A Leucine rich hypothetic 95.9 0.086 3E-06 39.3 10.0 35 10-45 248-282 (401)
154 4fdw_A Leucine rich hypothetic 95.9 0.037 1.3E-06 41.3 7.8 35 6-41 176-210 (401)
155 1io0_A Tropomodulin; LRR prote 94.6 0.00054 1.8E-08 45.8 -5.2 89 6-95 61-162 (185)
156 4gt6_A Cell surface protein; l 90.5 2.1 7.3E-05 31.3 8.9 109 6-122 261-371 (394)
157 3rfe_A Platelet glycoprotein I 84.5 1.2 4.2E-05 27.5 3.8 35 84-119 31-66 (130)
158 4fs7_A Uncharacterized protein 83.9 2.4 8.1E-05 31.1 5.7 104 6-119 272-377 (394)
159 4h09_A Hypothetical leucine ri 81.3 3.2 0.00011 30.0 5.6 55 59-116 285-341 (379)
160 4fs7_A Uncharacterized protein 79.1 5.6 0.00019 29.0 6.3 103 6-118 249-353 (394)
161 4gt6_A Cell surface protein; l 74.5 7.6 0.00026 28.3 5.9 103 6-117 284-387 (394)
162 4h09_A Hypothetical leucine ri 60.1 11 0.00039 27.0 4.3 82 6-92 259-341 (379)
163 1pgv_A TMD-1, tropomodulin TMD 47.1 2.4 8.2E-05 28.5 -1.1 111 8-119 39-168 (197)
164 2lz0_A Uncharacterized protein 24.6 1.1E+02 0.0037 17.7 4.3 15 28-42 14-28 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=7e-14 Score=102.43 Aligned_cols=108 Identities=23% Similarity=0.234 Sum_probs=84.1
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCc
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLE 87 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 87 (145)
.+++|++|++++|.++.. +..++++++|++|++++|.+.+- +.. ...+++|+.|+++++...+.++...+.+++|+
T Consensus 181 ~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l--~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSAL--GPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp ESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCC--CGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred cCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcC--chh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 478888888888888743 35688888888888888877642 112 34678888888888776777776777888888
Q ss_pred eeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.|.+.+|...+.+|..++++++|++|++++|+
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 88888888888888888888888888888874
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.47 E-value=1.8e-13 Score=100.25 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=49.4
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGA 82 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 82 (145)
|.++..+++|++|++++|.+.+.+ ..++++++|++|++++|...+. ++.. ...+++|+.|++.+|...+.++...+.
T Consensus 199 p~~l~~l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 199 PASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRN-YPPI-FGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp CGGGGGCTTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCB-CCCC-TTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred hHhhcCCCCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhh-hHHH-hcCCCCCCEEECCCCCchhhcchhhhc
Confidence 334444444555555544444332 2344444455555544444332 1111 233444445554444444444433444
Q ss_pred CCCCceeeeccCcccCCCCccCCCCCCCCEEEec
Q 045889 83 MPKLESLIANPCAYLRKLPKELWCVKSLCKLDLH 116 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 116 (145)
+++|+.|.+.+|+.++.+|.+++++++++.+.+.
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 4445555554444444444444444444444443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.45 E-value=1.6e-14 Score=116.29 Aligned_cols=138 Identities=13% Similarity=0.049 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|..+..+++|++|++++|.+++..+..++++++|+.|++++|.+.|. ++.. .+.+++|+.|+++++.-.+.+|...+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~-l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDE-VGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC-CCGG-GGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC-CChH-HhCCCCCCEEECCCCcccCcCChHHh
Confidence 466677889999999999999998888999999999999999998873 3333 56789999999998876667777778
Q ss_pred CCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc----HHHHHhccccccCccccceeeccCC
Q 045889 82 AMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ----TELRQGLRTFEDMEWRYDIQLYPYG 144 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ 144 (145)
.++.|+.|++++|...+.+|.+ +.+.++....+.+|+ .-+ ..|.. ..+++|++|+|+|++
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l-~~C~~-~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPL-PRCDP-SNADGYAHHQRSHHH 765 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTS-CCCCS-CC-------------
T ss_pred CCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCC-cCCCC-CccCCCCCCCCcccc
Confidence 8999999999999888888874 334455555555553 112 25665 778899999999975
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=1.6e-12 Score=90.69 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=75.7
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGA 82 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 82 (145)
|..+..+++|++|+|++|.+...+...+..+++|++|++++|.+.+- .... ...+++|+.|++.++. +..++...+.
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 133 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAV-FDRLVHLKELFMCCNK-LTELPRGIER 133 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CCSCCTTGGG
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhH-hCcchhhCeEeccCCc-ccccCccccc
Confidence 44566677777777777777666555567777777777777766531 1111 2457788888887654 5566655567
Q ss_pred CCCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 83 MPKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+++|+.|.+.+|. +..+|. .+..+++|+.|++.+++
T Consensus 134 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 134 LTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 7888888887754 445554 56778888888888765
No 5
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=90.24 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=84.4
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccE-EEcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEW-TMGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 83 (145)
.+..+++|++|++++|.+++.+...++.+++|++|++++|.+.+.. ... ...+++|++|+++++. +..+ +...+.+
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 128 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKM-FKGLESLKTLMLRSNR-ITCVGNDSFIGL 128 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGG-GTTCSSCCEEECTTSC-CCCBCTTSSTTC
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhH-hcCCcCCCEEECCCCc-CCeECHhHcCCC
Confidence 3567788888999888887766667888889999999888775522 211 3468899999998765 4443 3345678
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|...+..|..+..+++|+.|++++++
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 899999998876554447788999999999999885
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=3.5e-12 Score=88.46 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE-EcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT-MGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 83 (145)
.+..+++|++|+|++|.+.+..+..+..+++|++|++++|.+..- +......+++|+.|++.++. +..++ ...+.+
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l 127 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL--PKSLFEGLFSLQLLLLNANK-INCLRVDAFQDL 127 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc--CHhHccCCCCCCEEECCCCC-CCEeCHHHcCCC
Confidence 566677888888888877766556777888888888877766531 11102457788888888764 43332 234567
Q ss_pred CCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|. +..++. .+..+++|+.|++++++
T Consensus 128 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 128 HNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 888888887765 444544 57888899999998875
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=6.9e-13 Score=96.46 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCcEEEEec-ccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC
Q 045889 2 VRSVYQFPPILTDLSLSN-TELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 80 (145)
+|..+..+++|++|++++ |.+.+..+..++++++|++|++++|.+.+ ..+.. ...+++|++|+++++.-.+.++...
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDF-LSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGG-GGGCTTCCEEECCSSEEESCCCGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHH-HhCCCCCCEEeCCCCccCCcCChHH
Confidence 345556666666666663 55555555556666666666666665543 11111 2345566666665543222333334
Q ss_pred CCCCCCceeeeccCcccCCCCccCCCCC-CCCEEEecCC
Q 045889 81 GAMPKLESLIANPCAYLRKLPKELWCVK-SLCKLDLHWP 118 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~lp~~l~~l~-~L~~L~l~~~ 118 (145)
+.+++|+.|.+.+|...+.+|..++.++ +|+.|+++++
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 4556666666655554445555555555 5566665554
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=9.4e-12 Score=87.65 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-cCCCCCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-GAGAMPK 85 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 85 (145)
..+++|++|++++|.+.+.+...+..+++|++|++++|.+.+-. ... ...+++|+.|++.++. +..++. ..+.+++
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-SGV-FDRLTKLKELRLNTNQ-LQSIPAGAFDKLTN 156 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-hhH-hccCCcccEEECcCCc-CCccCHHHcCcCcC
Confidence 33344444444444444333333444444444444444333210 000 1335666666666553 444433 2345677
Q ss_pred CceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|... .+|. .+.++++|+.|++++++
T Consensus 157 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCc
Confidence 777777765433 4443 56777788888887764
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=2.1e-12 Score=88.00 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=76.5
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMP 84 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (145)
.+..+++|++|++++|.+.. ++.+..+++|++|++++|.+.+.... . ...+++|+.|+++++.-....+...+.++
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-N-LSGLTSLTLLDISHSAHDDSILTKINTLP 136 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-C-CTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-h-hcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence 45667888888888885543 34678888888888888776542211 2 34678888888887643332333445778
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+|+.|.+.+|...+.+| .+.++++|+.|++++|.
T Consensus 137 ~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 88888888776566666 57778888888888775
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.31 E-value=1e-11 Score=88.49 Aligned_cols=112 Identities=21% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 83 (145)
.+..+++|++|++++|.+.+.+...++.+++|++|++++|.+.+-. ... ...+++|+.|++.++. +..++.. .+.+
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 180 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGV-FDKLTNLTELDLSYNQ-LQSLPEGVFDKL 180 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHH-hccCccCCEEECCCCC-cCccCHHHhcCC
Confidence 3456666777777776666555555666677777777666554311 111 2356777777777664 4444333 2567
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|...+..+..++++++|+.|++++|+
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 788888887765444333456778888888887764
No 11
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=7.5e-12 Score=85.02 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=86.4
Q ss_pred CCCcEEEEecccCCCCCch-hccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCCc
Q 045889 10 PILTDLSLSNTELMEDPMP-MMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKLE 87 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~ 87 (145)
.+|++|++++|.+.+.+.. .++.+++|++|++++|.+.+. .+.. ...+++|++|+++++. +..++.. .+.+++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNA-FEGASHIQELQLGENK-IKEISNKMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTT-TTTCTTCCEEECCSCC-CCEECSSSSTTCTTCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhH-cCCcccCCEEECCCCc-CCccCHHHhcCCCCCC
Confidence 4999999999999877653 488999999999999988662 2222 4568999999999875 5555543 46789999
Q ss_pred eeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.|.+.++...+..|..+..+++|++|++++++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999887666668889999999999999885
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=1.4e-11 Score=84.27 Aligned_cols=111 Identities=24% Similarity=0.226 Sum_probs=72.9
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 83 (145)
.+..+++|++|++++|.+...+...+..+++|++|++++|.+.+- .... ...+++|+.|++.++. +..++.. .+.+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 123 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGV-FDKLTQLKELALNTNQ-LQSLPDGVFDKL 123 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhH-hcCccCCCEEEcCCCc-CcccCHhHhccC
Confidence 356677777777777777666555567777777777777765531 1111 2457788888887653 4444433 3567
Q ss_pred CCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|. +..++. .+.++++|++|++++++
T Consensus 124 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 124 TQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 888888887764 445555 46778888888888763
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.30 E-value=2e-12 Score=104.05 Aligned_cols=112 Identities=21% Similarity=0.143 Sum_probs=60.6
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMP 84 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (145)
.+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+.. ...+++|+.|++.++.-.+.++...+.++
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-CCHH-HhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 333444444444444444443334444444444444444444331 1111 23456666666666554444554555666
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+|+.|.+.+|...+.+|..++++++|+.|++++|
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 7777777776666667777777777777777665
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=1.2e-12 Score=95.16 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|..+..+++|++|++++|.+.+..+..++++++|++|++++|.+.+.. +.. ...+++|++|++.++.-.+.++...+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPS-ISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-CGG-GGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-ChH-HhcCCCCCeEECcCCcccCcCCHHHh
Confidence 5667788888999999988887666677888888999998888776522 222 34577888888876653334444445
Q ss_pred CCC-CCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 82 AMP-KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 82 ~~~-~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.++ +|+.|.+.+|...+.+|..+..++ |+.|+++++
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 555 667777766554444454444443 445544443
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=1.3e-11 Score=88.93 Aligned_cols=114 Identities=25% Similarity=0.241 Sum_probs=88.2
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA- 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 80 (145)
+|..+..+++|++|++++|.+++.++..+..+++|++|++++|.+..-. ... ...+++|+.|++.++. +..++...
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~ 168 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGL-LTPTPKLEKLSLANNN-LTELPAGLL 168 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTT-TTTCTTCCEEECTTSC-CSCCCTTTT
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhh-cccccCCCEEECCCCc-CCccCHHHh
Confidence 5666778889999999999888877777888999999999888765421 111 2457899999998764 55665443
Q ss_pred CCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 81 GAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
..+++|+.|.+.+|. +..+|.++....+|+.+++++++
T Consensus 169 ~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 NGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 468899999998754 66899999889999999999875
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=1.6e-11 Score=86.43 Aligned_cols=111 Identities=23% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 83 (145)
.+..+++|++|++++|.+.+.+...+..+++|++|++++|.+.+-. ... ...+++|++|++.++. +..++.. .+.+
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 130 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGV-FDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhH-hcccCCCCEEEcCCCc-CCCcChhHhccC
Confidence 4666777888888888777766666777788888888777665311 111 3457788888888763 4555443 2567
Q ss_pred CCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|. +..+|. .++++++|+.|+++++.
T Consensus 131 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 131 TKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence 888888887764 555665 57888889999988874
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=9e-12 Score=84.81 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=43.7
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCcee
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESL 89 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 89 (145)
++|++|++++|.+...+ .+..+++|++|++++|.... +. . ...+++|++|++.++.-....+...+.+++|+.|
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--ch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34455555555444222 34445555555554442211 10 1 2234555555554433211122233344555555
Q ss_pred eeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 90 IANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 90 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.+.+|......|..++++++|++|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 55444333333444444555555555444
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=1.8e-11 Score=85.33 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=87.1
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCCc
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKLE 87 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~ 87 (145)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.. +.......+++|+.|+++++. +..++.. .+.+++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhC
Confidence 4899999999999998877889999999999999888744 221113568999999999874 5555544 35789999
Q ss_pred eeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.|.+.+|. +..+|..+.++++|+.|+++++.
T Consensus 116 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp EEECCSSC-CCSCCTTGGGCTTCSEEECCSSC
T ss_pred eEeccCCc-ccccCcccccCCCCCEEECCCCc
Confidence 99998764 66899999999999999999874
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=2.3e-12 Score=85.51 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCCCcEEEEecccCC-CCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCC
Q 045889 8 FPPILTDLSLSNTELM-EDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 86 (145)
.+++|+.|++++|.+. +..+..+..+++|++|++++|.+.+. .. ...+++|+.|+++++.-...++...+.+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 4567788888887776 33334567777888888877766543 22 4567778888877664222233333347777
Q ss_pred ceeeeccCcccCCCC--ccCCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLP--KELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~ 119 (145)
+.|.+.+|. +..+| ..+.++++|+.|++++|+
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc
Confidence 888777653 44554 466777778888877764
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.28 E-value=8.9e-12 Score=94.22 Aligned_cols=114 Identities=22% Similarity=0.193 Sum_probs=87.8
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccE-EEcC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEW-TMGA 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~ 80 (145)
+|.++..+++|++|++++|.+.+.++..++.+++|++|++++|.+.+ ..... ...+++|+.|+++++. +..+ +...
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~ 367 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRM-FENLDKLEVLDLSYNH-IRALGDQSF 367 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGG-GTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhH-hcCcccCCEEECCCCc-ccccChhhc
Confidence 35678888999999999998887776788899999999998887643 22222 4568999999999875 4444 3445
Q ss_pred CCCCCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 81 GAMPKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+.+++|+.|.+.+|. +..+|. .+.++++|++|++++++
T Consensus 368 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 368 LGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 678999999998865 555666 45889999999999874
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.27 E-value=2.1e-11 Score=87.20 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=17.0
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS 45 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 45 (145)
+..+++|++|++++|.+.+.++..+.++++|++|++++|.
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc
Confidence 3334444444444444443333334444444444444443
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=2.3e-11 Score=84.33 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=85.3
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCCCCce
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMPKLES 88 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~ 88 (145)
++|+.|++++|.+...+...+..+++|++|++++|.+.+ ..+.. ...+++|++|+++++. +..++... +.+++|+.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDA-FQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTT-TTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHH-hhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence 689999999999987776788999999999999887754 21222 4578999999999764 55665443 56899999
Q ss_pred eeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 89 LIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 89 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|.+.+|...+..|..+.++++|+.|+++++.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 9998876554446688999999999999885
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=1.3e-11 Score=87.96 Aligned_cols=113 Identities=20% Similarity=0.131 Sum_probs=69.3
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMP 84 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (145)
.+..+++|++|++++|.+...+...++++++|++|++++|.+.+ ..... ...+++|++|++.++.-....+...+.++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGA-FSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTT-TTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhh-hcCCccccEEECCCCCccccCchhcccCC
Confidence 45556666666666666655544456666677777776665432 11111 34567777777765542221122345677
Q ss_pred CCceeeeccCcccC-CCCccCCCCCCCCEEEecCCc
Q 045889 85 KLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 85 ~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+|+.|.+.+|.... .+|..++++++|++|++++|.
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 88888887765433 367788888888888888773
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=1.4e-11 Score=88.14 Aligned_cols=113 Identities=19% Similarity=0.110 Sum_probs=88.9
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccE-EEcCC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEW-TMGAG 81 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~ 81 (145)
|..+..+++|++|++++|.+...+...++++++|++|++++|.+.+ ..... ...+++|+.|++.++. +..+ +...+
T Consensus 122 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~ 198 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERA-FRGLHSLDRLLLHQNR-VAHVHPHAFR 198 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTT-TTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHH-hcCccccCEEECCCCc-ccccCHhHcc
Confidence 5567889999999999999988776778999999999999887653 21111 4468999999999875 4444 34456
Q ss_pred CCCCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 82 AMPKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
.+++|+.|.+.+|.. ..+|. .+.++++|+.|++++++
T Consensus 199 ~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccEeeCCCCcC-CcCCHHHcccCcccCEEeccCCC
Confidence 789999999988754 45554 58899999999999885
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.24 E-value=1.5e-11 Score=96.09 Aligned_cols=112 Identities=21% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE-EcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT-MGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 83 (145)
.+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+...+.. ...+++|+.|+++++. +..++ ...+.+
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 496 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQ-LEQISWGVFDTL 496 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCCc-CCccChhhhccc
Confidence 34455555555555555554444445555566666665555443222222 2344555555554442 22221 122334
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
++|+.|.+.+|...+..|..++++++|+.|++++|
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 44444444444333222334444444444444433
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.24 E-value=3.7e-11 Score=92.37 Aligned_cols=111 Identities=20% Similarity=0.046 Sum_probs=90.0
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|..+. ++|++|++++|.+.+.++..+.++++|++|++++|.+.+ ..+.. ...+++|++|+++++. +..++..
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~-- 87 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISV-FKFNQELEYLDLSHNK-LVKISCH-- 87 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGG-GTTCTTCCEEECCSSC-CCEEECC--
T ss_pred cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC-cChHH-hhcccCCCEEecCCCc-eeecCcc--
Confidence 555444 899999999999988887889999999999999887754 22222 5678999999999874 6677655
Q ss_pred CCCCCceeeeccCcccC-CCCccCCCCCCCCEEEecCCc
Q 045889 82 AMPKLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.+++|+.|.+.+|...+ .+|..++++++|++|+++++.
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 78999999999877554 578899999999999998875
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.24 E-value=1.6e-11 Score=95.89 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=82.0
Q ss_pred CCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE-EcCCC
Q 045889 4 SVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT-MGAGA 82 (145)
Q Consensus 4 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 82 (145)
..+..+++|++|++++|.+.+.++..++++++|++|++++|.+.+. .+.. ...+++|++|++.++. +..++ ...+.
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 126 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGS-FSGLTSLENLVAVETK-LASLESFPIGQ 126 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTS-STTCTTCCEEECTTSC-CCCSSSSCCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-Chhh-cCCcccCCEEEccCCc-cccccccccCC
Confidence 3567778888888888877766666778888888888877766542 1222 4568888888888765 33322 44567
Q ss_pred CCCCceeeeccCcccC-CCCccCCCCCCCCEEEecCCc
Q 045889 83 MPKLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+++|+.|.+.+|...+ .+|..++++++|++|+++++.
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 8889999998876543 578889999999999998873
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.23 E-value=3.5e-11 Score=85.69 Aligned_cols=109 Identities=24% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPK 85 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~ 85 (145)
..+++|++|++++|.+++.+...++++++|++|++++|.+.+.. ... ...+++|++|++.++. +..++.. .+.+++
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGV-FDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTN 158 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHH-hccCCCCCEEECCCCc-cCccCHHHhccCcc
Confidence 34455555555555554444344455555555555544443211 100 2345566666666542 3333322 245566
Q ss_pred CceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|... .++. .++++++|+.|++++|.
T Consensus 159 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 159 LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc
Confidence 666666665433 3333 34666666777666653
No 29
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=2e-12 Score=84.18 Aligned_cols=107 Identities=18% Similarity=0.133 Sum_probs=79.2
Q ss_pred CCCCCcEEEEecccCC-CCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCC
Q 045889 8 FPPILTDLSLSNTELM-EDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 86 (145)
.+++|+.|++++|.+. +..+..++.+++|++|++++|.+.+. .. ...+++|++|+++++.-...++...+.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 4578899999999887 44445678899999999988877653 22 4568899999998775332244334458899
Q ss_pred ceeeeccCcccCCCC--ccCCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLP--KELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~ 119 (145)
+.|.+++|. +..+| ..++++++|++|++++|+
T Consensus 91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 999998765 44444 678889999999998885
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.22 E-value=1.8e-11 Score=95.53 Aligned_cols=111 Identities=23% Similarity=0.176 Sum_probs=52.2
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-cCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-GAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 83 (145)
.+..+++|++|+|++|.+++.++..+.++++|++|+|++|.+.+ ++.....++++|++|++.++. +..++. ..+.+
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L 147 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETN-LASLENFPIGHL 147 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcC
Confidence 34445555555555555544444445555555555555444322 111102345555555555442 222221 23445
Q ss_pred CCCceeeeccCcccC-CCCccCCCCCCCCEEEecCC
Q 045889 84 PKLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~ 118 (145)
++|+.|.+..|.... .+|..++++++|++|+++++
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 556666655543221 23445555666666666554
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.22 E-value=5.9e-11 Score=84.39 Aligned_cols=108 Identities=21% Similarity=0.230 Sum_probs=56.5
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L 86 (145)
.+++|++|++++|.+...+...++.+++|++|++++|.+.+.. ... ...+++|+.|++.++. +..++.. ...+++|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGV-FDKLTSLKELRLYNNQ-LKRVPEGAFDKLTEL 183 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTC
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhH-ccCCcccceeEecCCc-CcEeChhHhccCCCc
Confidence 3444444444444444433333444455555555444433210 000 2345666777766543 3333322 3456777
Q ss_pred ceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+.|.+.+|. +..+|. .+..+++|+.|++++++
T Consensus 184 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 184 KTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 788777654 445555 46777888888887764
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.22 E-value=3.9e-12 Score=100.59 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCcEEEEecccCCCC-----------------Cchhcc--CCCCCCEEEeecccccCcEEEEecCCCCccc
Q 045889 2 VRSVYQFPPILTDLSLSNTELMED-----------------PMPMME--KLPRPQVLKLKQNSYLGRKLACVGSGGFPEL 62 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 62 (145)
+|.+++.+++|++|++++|.+++. .+..++ ++++|++|++++|.+.+.. +.. ...+++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-PTF-LKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC-CTT-TTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC-hHH-HhcCCCC
Confidence 466677777777777777777763 345666 7777777777777665532 222 4556777
Q ss_pred cEEeccCCCCCc--cEEEcCCCC------CCCceeeeccCcccCCCCc--cCCCCCCCCEEEecCCc
Q 045889 63 KVLNLKSMYWLD--EWTMGAGAM------PKLESLIANPCAYLRKLPK--ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 63 ~~L~l~~~~~~~--~~~~~~~~~------~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~ 119 (145)
++|++.++..+. .+|...+.+ ++|+.|.+.+|... .+|. .++++++|+.|+++++.
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 777777664222 344333333 66666666665433 6666 66666666666666653
No 33
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=8.8e-11 Score=78.46 Aligned_cols=108 Identities=25% Similarity=0.297 Sum_probs=84.7
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L 86 (145)
.+++|+.|++++|.+.+.+...++.+++|++|++++|.+.+-. ... ...+++|+.|++.++. +..++.. .+.+++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGV-FDKLTKLTILYLHENK-LQSLPNGVFDKLTQL 102 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhH-ccCCCccCEEECCCCC-ccccCHHHhhCCccc
Confidence 3479999999999998877677899999999999988776421 111 3468999999999764 5555443 3578999
Q ss_pred ceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
+.|.+.++. +..+|.. +.++++|++|++++++
T Consensus 103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 999998864 5577775 5789999999999885
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.21 E-value=3.9e-11 Score=86.53 Aligned_cols=113 Identities=20% Similarity=0.148 Sum_probs=55.9
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEe-----------------------cCCCCccc
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACV-----------------------GSGGFPEL 62 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----------------------~~~~~~~L 62 (145)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+...+.. ....+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 4445555555555555444433444555555555555444433111111 02234455
Q ss_pred cEEeccCCCCCccEEE-cCCCCCCCceeeeccCcccCCCCccCCCCC-CCCEEEecCCc
Q 045889 63 KVLNLKSMYWLDEWTM-GAGAMPKLESLIANPCAYLRKLPKELWCVK-SLCKLDLHWPQ 119 (145)
Q Consensus 63 ~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~-~L~~L~l~~~~ 119 (145)
+.|++.++. +..++. ..+.+++|+.|.+.+|...+..|..+.+++ +|+.|++++++
T Consensus 202 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 202 QVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 555555443 222211 223456666666666655555555666663 77777777664
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=4.1e-11 Score=92.76 Aligned_cols=113 Identities=20% Similarity=0.142 Sum_probs=86.3
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccE-EEcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEW-TMGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 83 (145)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..++.. ...+++|+.|+++++. +..+ +...+.+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 493 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSL 493 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcc
Confidence 46778888888888888777666778888999999998887764344444 5678999999999875 4444 4455678
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|...+..|..++++++|+.|++++++
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 899999998876544444568899999999999864
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=1.7e-11 Score=94.64 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-cCCC
Q 045889 4 SVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-GAGA 82 (145)
Q Consensus 4 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~ 82 (145)
..+..+++|++|++++|.+.+.++..++++++|++|++++|.+.+...+.. ...+++|++|++.++...+.++. ..+.
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhc
Confidence 345555566666666665555554445666666666665555443111112 34566666666665543444432 3445
Q ss_pred CCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 83 MPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+++|+.|.+.+|...+.+|..++++++|++|+++.+
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 666777777666555555666666666666665544
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.20 E-value=4.1e-11 Score=93.46 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=85.8
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCCc
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKLE 87 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~ 87 (145)
++++++|+|++|.+++.+...+.++++|++|+|++|.+.+ +.......+++|++|+++++. +..++.. .+.+++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 127 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCC
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCC
Confidence 4689999999999998877789999999999999887653 221114568999999999874 6666644 36789999
Q ss_pred eeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
.|.+.+|. +..+|. .++++++|++|+++++.
T Consensus 128 ~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 128 KLVAVETN-LASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCc-CCCCChhhhhcCcccCeeccccCc
Confidence 99998875 555665 58999999999999874
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.20 E-value=9.2e-11 Score=83.39 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=22.6
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccc
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 46 (145)
.+..+++|++|++++|.+...+...+..+++|++|++++|.+
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 344555566666665555544434445555555555555544
No 39
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=1.1e-10 Score=79.46 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=83.7
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-cCCCCCCCc
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-GAGAMPKLE 87 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 87 (145)
+++|++|++++|.++..+ ..+..+++|++|++++|.+.+-. ... ...+++|++|+++++. +..++. ..+.+++|+
T Consensus 30 ~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~-~~~-f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLS-NQS-FSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeC-HhH-ccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCC
Confidence 468999999999998655 78899999999999988876521 112 4568999999999875 555543 356789999
Q ss_pred eeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
.|.+.+|. +..+|. .+.++++|+.|++.+++
T Consensus 106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 99998865 556776 47889999999999875
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=2.7e-11 Score=80.28 Aligned_cols=112 Identities=25% Similarity=0.240 Sum_probs=89.1
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE--Ec
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT--MG 79 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~ 79 (145)
+|..+..+++|++|++++|.+... ..++.+++|++|++++|.+.+. ++.. ...+++|+.|++.++. +..++ ..
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~ 115 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDML-AEKLPNLTHLNLSGNK-LKDISTLEP 115 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHH-HHHCTTCCEEECBSSS-CCSSGGGGG
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHH-HhhCCCCCEEeccCCc-cCcchhHHH
Confidence 566778889999999999998766 6788999999999999988763 2222 2348999999999874 55443 34
Q ss_pred CCCCCCCceeeeccCcccCCCCc----cCCCCCCCCEEEecCCc
Q 045889 80 AGAMPKLESLIANPCAYLRKLPK----ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~~~ 119 (145)
.+.+++|+.|.+.+|.. ..+|. .+.++++|++|++++|.
T Consensus 116 l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 116 LKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCC
Confidence 56789999999988764 45665 78899999999999886
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=3.8e-11 Score=91.13 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccc
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 46 (145)
.+..+++|++|+|++|.+.+.++..+..+++|++|++++|.+
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 344555555555555555544444455555555555555443
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=1.7e-10 Score=78.95 Aligned_cols=108 Identities=25% Similarity=0.242 Sum_probs=83.9
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L 86 (145)
.+++|++|++++|.+++.+...++.+++|++|++++|.+.+- .... ...+++|++|++.++. +..++.. .+.+++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGV-FNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-Chhh-cCCCCCcCEEECCCCc-CCccCHhHhcCccCC
Confidence 356899999999999887767789999999999998877642 1111 2468999999999764 5555443 3678999
Q ss_pred ceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+.|.+.++. +..+|. .+.++++|+.|+++++.
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 999998865 455665 47889999999999874
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.17 E-value=4.4e-11 Score=92.58 Aligned_cols=112 Identities=21% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE-EcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT-MGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 83 (145)
.+..+++|++|++++|.+.+.++..++++++|++|++++|...+ ..... ...+++|++|++.++. +..++ ...+.+
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-~~~l~~L~~L~L~~n~-l~~l~~~~~~~l 123 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGA-FSGLSSLQKLVAVETN-LASLENFPIGHL 123 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTT-TTTCTTCCEEECTTSC-CCCSTTCSCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhh-hcCccccccccccccc-cccCCCcccccc
Confidence 45667777777777777766555567777777777777665433 11112 4467788888887653 33332 235678
Q ss_pred CCCceeeeccCcccC-CCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|.... .+|..++++++|++|+++++.
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 889999988765444 478888899999999998773
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.17 E-value=3.2e-11 Score=88.72 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-cCCC
Q 045889 4 SVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-GAGA 82 (145)
Q Consensus 4 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~ 82 (145)
..+..+++|++|++++|.+++.+...++++++|++|++++|.+..-..... ...+++|++|++.++.....++. ..+.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh-hccCCCCcEEECCCCccccccCHHHccC
Confidence 345555666666666666655554445666666666666555443111011 33566777777766543444432 3345
Q ss_pred CCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 83 MPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+++|+.|.+.+|...+..|..++++++|++|+++++.
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 6677777777665444456677777777777777664
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.17 E-value=6.4e-11 Score=92.52 Aligned_cols=114 Identities=18% Similarity=0.071 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE---E
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT---M 78 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~ 78 (145)
+|.++..+++|++|++++|.+.+.++..++++++|++|++++|...+...... ...+++|++|++.++. +..+. .
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~ 370 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-LENLENLRELDLSHDD-IETSDCCNL 370 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST-TTTCTTCCEEECCSSC-CCEEEESTT
T ss_pred CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh-hhccCcCCEEECCCCc-cccccCcch
Confidence 45555566666666666666554444445555566666655554432211111 2335555555555443 22221 1
Q ss_pred cCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecC
Q 045889 79 GAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHW 117 (145)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~ 117 (145)
..+.+++|+.|.+.+|...+..|..++++++|++|++++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 233444555555544433222233344444444444443
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.17 E-value=4.8e-11 Score=86.06 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|.++..+++|++|++++|.+.+.++..+..+++|++|++++|.+.+.. ... ...+++|+.|+++++.-....+...+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFP-YKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGG-GTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhh-ccCcccCCEeECCCCCCcccCHHHHH
Confidence 4667788889999999999888776677888999999999888765421 212 34689999999998764333344455
Q ss_pred CCC-CCceeeeccCccc
Q 045889 82 AMP-KLESLIANPCAYL 97 (145)
Q Consensus 82 ~~~-~L~~L~l~~~~~l 97 (145)
.++ +|+.|.+.+|+..
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 664 8999999887654
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.17 E-value=5.7e-11 Score=89.86 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=24.8
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccccc
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYL 47 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 47 (145)
.+..+++|++|+|++|.+...+...+..+++|++|++++|.+.
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 4455566666666666655544455556666666666555443
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.17 E-value=3.7e-11 Score=90.82 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=54.2
Q ss_pred CCCCCCCCcEEEEecccCCCC-CchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc--CC
Q 045889 5 VYQFPPILTDLSLSNTELMED-PMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG--AG 81 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~ 81 (145)
.+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+ ..+.. ...+++|++|++.++.-.+.++.. .+
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhh-ccCcccCCEEeCCCCCCCccccCccccc
Confidence 344455555555555544322 12334455555555554444322 11111 334556666666554322222222 34
Q ss_pred CCCCCceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 82 AMPKLESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
.+++|+.|.+.+|...+..|.. ++++++|++|+++++.
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 5566666666665543333443 5666777777776653
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.16 E-value=6e-11 Score=90.39 Aligned_cols=112 Identities=17% Similarity=0.075 Sum_probs=57.3
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMP 84 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (145)
.+..+++|++|+|++|.+.+..+..++++++|++|++++|.+..-. ... ...+++|++|++.++.-....+...+.++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-LGV-FTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-TTS-STTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-ccc-ccCCCCCCEEECCCCccccCChhHccccc
Confidence 4555566666666666555544455566666666666555543211 001 23456666666665432111122234455
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+|+.|.+.++......+..+.++++|++|++++|
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 6666666554433333445556666666666555
No 50
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=2.4e-11 Score=97.48 Aligned_cols=111 Identities=20% Similarity=0.137 Sum_probs=89.2
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGA 82 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 82 (145)
|..+..++.|+.|+|++|.+...+ ..+.++++|++|+|++|.+. .++.. ...+++|+.|+++++. +..+|...+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~--~lp~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT--ELPAE-IKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS--CCCGG-GGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred hhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc--ccChh-hhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 455778899999999999987544 56679999999999988876 23333 4578999999999875 5577777788
Q ss_pred CCCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 83 MPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+++|+.|.+.+|. ++.+|.+++++++|+.|++++|.
T Consensus 292 l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 9999999998864 67899999999999999999984
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.15 E-value=1.5e-10 Score=89.94 Aligned_cols=111 Identities=24% Similarity=0.172 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|..+ +++|++|++++|.+.+.++..++++++|++|++++|.+.+ ..+.. ...+++|++|+++++. +..++..
T Consensus 46 ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~-- 118 (562)
T 3a79_B 46 VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHV-FLFNQDLEYLDVSHNR-LQNISCC-- 118 (562)
T ss_dssp CCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTT-TTTCTTCCEEECTTSC-CCEECSC--
T ss_pred CCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHH-hCCCCCCCEEECCCCc-CCccCcc--
Confidence 45433 3799999999999988887889999999999999887654 21222 4568999999999875 5666554
Q ss_pred CCCCCceeeeccCcccC-CCCccCCCCCCCCEEEecCCc
Q 045889 82 AMPKLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.+++|+.|.+.+|...+ .+|..++++++|++|+++++.
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 78999999998876443 345789999999999999875
No 52
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=80.87 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCCCcEEEEecccCCCCCc-hhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCC
Q 045889 9 PPILTDLSLSNTELMEDPM-PMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKL 86 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L 86 (145)
...+++|++++|.+++.++ ..+..+++|++|++++|.+.+ ..... ...+++|++|+++++. +..++.. .+.+++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGA-FEGASGVNEILLTSNR-LENVQHKMFKGLESL 107 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTT-TTTCTTCCEEECCSSC-CCCCCGGGGTTCSSC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHH-hCCCCCCCEEECCCCc-cCccCHhHhcCCcCC
Confidence 4567899999999987643 457899999999999887654 21212 4578999999999875 4444433 4678999
Q ss_pred ceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+.|.+.+|...+..|..+.++++|+.|+++++.
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 999999876555557789999999999999874
No 53
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.15 E-value=8.8e-11 Score=86.89 Aligned_cols=107 Identities=21% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE-EcCCCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT-MGAGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 86 (145)
.+++|++|+|++|.+...+...+..+++|++|++++|.+.. ..... ...+++|+.|++.++. +..+. ...+.+++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFL-FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTT-TTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHH-hCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence 67777888887777776665667777888888887776543 11111 3456788888887654 33332 234567788
Q ss_pred ceeeeccCcccCCCCccC----CCCCCCCEEEecCC
Q 045889 87 ESLIANPCAYLRKLPKEL----WCVKSLCKLDLHWP 118 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~~l----~~l~~L~~L~l~~~ 118 (145)
+.|.+.+| .+..+|..+ .++++|+.|+++++
T Consensus 139 ~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 139 QKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 88888765 355676654 56788888888776
No 54
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=1.3e-11 Score=80.23 Aligned_cols=110 Identities=23% Similarity=0.181 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE--Ec
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT--MG 79 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~ 79 (145)
+|..+..+++|++|++++|.+.+. ..++++++|++|++++|.+.+. ++.. ...+++|+.|+++++. +..++ ..
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~-~~~l~~L~~L~ls~N~-i~~~~~~~~ 108 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVL-AEKCPNLTHLNLSGNK-IKDLSTIEP 108 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHH-HHHCTTCCEEECTTSC-CCSHHHHGG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHH-hhhCCCCCEEECCCCc-CCChHHHHH
Confidence 577788899999999999998776 6789999999999998887663 2211 2348999999999875 44433 45
Q ss_pred CCCCCCCceeeeccCcccCCCCc----cCCCCCCCCEEEecC
Q 045889 80 AGAMPKLESLIANPCAYLRKLPK----ELWCVKSLCKLDLHW 117 (145)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~ 117 (145)
.+.+++|+.|.+.+|.. ..+|. .+..+++|+.|++++
T Consensus 109 ~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 109 LKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCCC
Confidence 56889999999998754 44554 678899999998763
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.15 E-value=6.4e-12 Score=99.33 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCCCCC--CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc-ccCcEEEEecC------CCCccccEEeccCCCC
Q 045889 2 VRSVYQ--FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS-YLGRKLACVGS------GGFPELKVLNLKSMYW 72 (145)
Q Consensus 2 lP~~~~--~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~------~~~~~L~~L~l~~~~~ 72 (145)
+|..++ .+++|++|++++|.+.+..+..++++++|++|++++|. +.+..++.. . ..+++|+.|++.++.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~- 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNN- 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSC-
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCc-
Confidence 788888 99999999999999888877889999999999999887 654111111 1 112556666665543
Q ss_pred CccEEE--cCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 73 LDEWTM--GAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 73 ~~~~~~--~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+..++. ..+.+++|+.|.+.+|...+.+| .++++++|++|+++++
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 224443 34455555555555444333444 4444444444444443
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=94.13 Aligned_cols=111 Identities=16% Similarity=0.033 Sum_probs=50.7
Q ss_pred CCCCCCCcEEEEecccCCCC-CchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc--CCC
Q 045889 6 YQFPPILTDLSLSNTELMED-PMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG--AGA 82 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~ 82 (145)
+..+++|++|++++|...+. ++..++++++|++|++++|.+.+ ..+.. ...+++|++|+++++.-.+.++.. .+.
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDA-FQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTS-SCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhH-ccCCcccCEeeCcCCCCCcccccCccccc
Confidence 34444444444444422211 12334444555555554444322 11111 234555666666554322222221 345
Q ss_pred CCCCceeeeccCcccCCCC-ccCCCCCCCCEEEecCC
Q 045889 83 MPKLESLIANPCAYLRKLP-KELWCVKSLCKLDLHWP 118 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~ 118 (145)
+++|+.|.+..|...+..+ ..++++++|++|+++++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 5666666666554333222 35666667777776665
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=3.3e-11 Score=94.52 Aligned_cols=111 Identities=21% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 84 (145)
+..+++|++|++++|.+.+.++..++.+++|++|++++|.+.+. .+.. ...+++|++|++.++. +..++... +.++
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~ 147 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHV-FQNVPLLTVLVLERND-LSSLPRGIFHNTP 147 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHH-HcCCCCCCEEEeeCCC-CCCCCHHHhccCC
Confidence 34567788888888877766656777888888888877766552 1111 3467788888887663 45555443 5677
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+|+.|.+.+|...+..|..++++++|+.|++++|.
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 88888887776555455567788888888887764
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.14 E-value=2.7e-11 Score=93.57 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCc-cEEEcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLD-EWTMGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 83 (145)
.+..+++|++|++++|.+.+.++..++++++|++|++++|.+.+.. ... ...+++|++|+++++.-.. ..+...+.+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSW-FGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHH-HTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHH-hccCCCCcEEECCCCcccccchhhhhhcc
Confidence 3445555555555555554444444555555555555555443311 111 2245556666665543111 122233455
Q ss_pred CCCceeeeccCcccCCCCc-cCCCCCCCCEEEecCC
Q 045889 84 PKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWP 118 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 118 (145)
++|+.|.+.+|...+.+|. .++++++|++|+++++
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 5666666655554444543 4566666666666554
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.11 E-value=2.2e-10 Score=82.44 Aligned_cols=103 Identities=24% Similarity=0.229 Sum_probs=57.2
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCcee
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESL 89 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 89 (145)
++++.|++++|.+.+..+..+..+++|++|++++|.+.+ +.. ...+++|++|+++++. +..++...+.+++|+.|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~--~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV--DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC--CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--ccC--CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEE
Confidence 577777777777766555667777777777777666543 111 2345666666666542 33444444455555555
Q ss_pred eeccCcccCCCC-ccCCCCCCCCEEEecCC
Q 045889 90 IANPCAYLRKLP-KELWCVKSLCKLDLHWP 118 (145)
Q Consensus 90 ~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~ 118 (145)
.+.+|. +..+| ..+.++++|++|+++++
T Consensus 106 ~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 106 DVSFNR-LTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp ECCSSC-CCCCCSSTTTTCTTCCEEECTTS
T ss_pred ECCCCc-CcccCHHHHcCCCCCCEEECCCC
Confidence 555433 22333 23445555555555544
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.11 E-value=2e-10 Score=81.73 Aligned_cols=108 Identities=18% Similarity=0.114 Sum_probs=83.1
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-cCCCCCCCc
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-GAGAMPKLE 87 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 87 (145)
.++|++|++++|.+++.+...++++++|++|++++|.+.+ ..... ...+++|++|+++++. +..++. ..+.+++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGA-YQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 103 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-ECTTT-TTTCTTCCEEECTTCC-CCEECTTTTTTCTTCC
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-cCHHH-ccCCcCCCEEECCCCc-cCccChhhhcCCcccc
Confidence 3689999999999987776688999999999998886643 21112 4568999999999765 444442 346789999
Q ss_pred eeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 88 SLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 88 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.|.+.+|...+..+..++++++|++|+++++.
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence 99998876444334478999999999999874
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.10 E-value=2e-10 Score=85.51 Aligned_cols=110 Identities=21% Similarity=0.095 Sum_probs=63.6
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMPK 85 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 85 (145)
..+++|++|++++|.+...+...++.+++|++|++++|.+.+.. +.. ...+++|++|++.++. +..++... +.+++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHV-FQNVPLLTVLVLERND-LSSLPRGIFHNTPK 142 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHH-hcCCCCCCEEECCCCc-cCcCCHHHhcCCCC
Confidence 34566666666666665555455666666677766666554311 111 2356667777776553 44444332 45667
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|...+..|..++++++|++|+++++.
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 7777776655433334456667777777776653
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.10 E-value=3.9e-10 Score=85.57 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AG 81 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~ 81 (145)
|..+..+++|++|+|++|.++..+...+..+++|++|++++|.+.. ..... ...+++|+.|++.++..++.++.. .+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYA-FNRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTT-TTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhH-HhcCCcccEEeCCCCCCccccChhhcc
Confidence 3567788899999999998887776778889999999998877642 11111 345667777777665555544332 23
Q ss_pred CCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 82 AMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.+++|+.|.+.+|. +..+| .+..+++|+.|+++++
T Consensus 194 ~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 194 GLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp TCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTS
T ss_pred CCCCCCEEECCCCc-ccccc-cccccccccEEECcCC
Confidence 44555555554432 22232 2333444444444433
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.10 E-value=5.9e-11 Score=87.29 Aligned_cols=110 Identities=17% Similarity=0.073 Sum_probs=48.3
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE--cCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM--GAGAM 83 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~ 83 (145)
+..+++|++|++++|.+.+.++..++++++|++|++++|.+.+-. ... ...+++|++|++.++. +..++. ..+.+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l 148 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSW-FKPLSSLTFLNLLGNP-YKTLGETSLFSHL 148 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHH-HTTCTTCSEEECTTCC-CSSSCSSCSCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhH-hCCCccCCEEECCCCC-CcccCchhhhccC
Confidence 344444555555444444433334444455555555444433211 000 1234555555555432 223322 22345
Q ss_pred CCCceeeeccCcccCCCC-ccCCCCCCCCEEEecCC
Q 045889 84 PKLESLIANPCAYLRKLP-KELWCVKSLCKLDLHWP 118 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~ 118 (145)
++|+.|.+.+|...+.++ ..++++++|++|+++++
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 555555555543333332 24455555555555544
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.09 E-value=1.6e-10 Score=88.02 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE-EcCC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT-MGAG 81 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 81 (145)
|..+..+++|++|+|++|.+...+...+.++++|++|++++|.+.+ ..... ...+++|+.|++.++. +..+. ...+
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~ 149 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYM-FQDLYNLKSLEVGDND-LVYISHRAFS 149 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTT-TTTCTTCCEEEECCTT-CCEECTTSST
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhH-ccccccCCEEECCCCc-cceeChhhcc
Confidence 5667888999999999998887776678888999999998776643 11112 3456777777777653 22222 1234
Q ss_pred CCCCCceeeeccCcccCCCCc-cCCCCCCCCEEEecC
Q 045889 82 AMPKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHW 117 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~ 117 (145)
.+++|+.|.+.+|. +..+|. .+.++++|+.|++++
T Consensus 150 ~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 150 GLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp TCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEES
T ss_pred CCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCC
Confidence 55666666665543 223332 244444444444444
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.09 E-value=3.8e-10 Score=85.36 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccccc
Q 045889 4 SVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYL 47 (145)
Q Consensus 4 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 47 (145)
..+..+++|++|+|++|.++..+...+..+++|++|++++|.+.
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 34566777777777777777666556777777777777766543
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=1.9e-11 Score=99.80 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=27.6
Q ss_pred ccccEEeccCCCCCccEEE--cCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 60 PELKVLNLKSMYWLDEWTM--GAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
++|+.|++.++. +..+|. ..+.+++|+.|.+.+|... .+| .++++++|+.|++++|
T Consensus 548 ~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 548 PKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred CCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 345555554433 223433 3445555555555554322 555 5555555555555554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.09 E-value=8.7e-11 Score=90.25 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=78.7
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhcc-CCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMME-KLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 83 (145)
.++.+++|++|++++|.+.+.++..+. .+++|++|++++|.+.+. . . ...+++|+.|+++++. +..++...+.+
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 213 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSSNK-LAFMGPEFQSA 213 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--E-C-CCCCTTCCEEECCSSC-CCEECGGGGGG
T ss_pred hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--c-c-cccCCCCCEEECCCCC-CCCCCHhHcCC
Confidence 455667777777777777665555554 677788888877766542 1 1 2357888888888764 55666666678
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|. +..+|..++.+++|+.|++++|+
T Consensus 214 ~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 214 AGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 889999998765 45688888888999999998875
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.09 E-value=6.8e-11 Score=85.94 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=79.8
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhc-cCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMM-EKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 83 (145)
.+..+++|++|++++|.+.+.++..+ ..+++|++|++++|.+.+. . . ...+++|+.|+++++. +..++...+.+
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~-~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l 213 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSSNK-LAFMGPEFQSA 213 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--E-C-CCCCTTCCEEECCSSC-CCEECGGGGGG
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--c-c-ccccccCCEEECCCCc-CCcchhhhccc
Confidence 44556777788887777766554444 3678888888877765432 1 1 2358889999998764 56666666678
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
++|+.|.+.+|. +..+|..+..+++|+.|++++++
T Consensus 214 ~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 214 AGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 899999998764 55788889999999999999885
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.08 E-value=1.9e-10 Score=91.04 Aligned_cols=110 Identities=17% Similarity=0.042 Sum_probs=69.3
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEE-EcCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWT-MGAGAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 84 (145)
+..+++|++|++++|.+.+..+..++++++|++|++++|.+.. ..... ...+++|++|++.++. +..++ ...+.++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKT-FAFCTNLTELHLMSNS-IQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTT-TTTCTTCSEEECCSSC-CCCCCSCTTTTCT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhh-hccCCCCCEEECCCCc-cCccChhHccccC
Confidence 4455566666666666655555555666666666666555433 11111 3456788888887664 33433 3345678
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+|+.|.+.+|...+..|..++++++|++|+++++
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 8888888877665555667788888888888776
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.08 E-value=2.1e-10 Score=80.04 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=18.6
Q ss_pred CCCCCCCcEEEEeccc-CCCCCchhccCCCCCCEEEeec
Q 045889 6 YQFPPILTDLSLSNTE-LMEDPMPMMEKLPRPQVLKLKQ 43 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~~ 43 (145)
+..+++|++|++++|. ++..+...+..+++|++|++++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 4445555555555553 4433333444555555555544
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.08 E-value=2.4e-10 Score=89.33 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEE-ecCCCCccccEEeccCCCCCccE-EEcCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLAC-VGSGGFPELKVLNLKSMYWLDEW-TMGAGAM 83 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 83 (145)
+..+++|++|++++|.+.+.++..++.+++|++|++++|.+.+..+.. .....+++|+.|+++++. +..+ +...+.+
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 499 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSL 499 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccc
Confidence 555666666666666665555555666666666666666654422211 002345666666666553 3332 2233455
Q ss_pred CCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 84 PKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
++|+.|.+.+|...+..|..+.++++| .|++++|
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 666666666655444444455555555 5555444
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=4.1e-11 Score=97.83 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=91.6
Q ss_pred CCCCCC--CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc-ccC--------------------cEE-------
Q 045889 2 VRSVYQ--FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS-YLG--------------------RKL------- 51 (145)
Q Consensus 2 lP~~~~--~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~--------------------~~~------- 51 (145)
+|..++ .+++|++|+|++|.+.+..+..++++++|++|++++|. +.+ ..+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 677777 89999999999998888777788899999999998886 443 011
Q ss_pred ---EE--ecCCCCccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCC-CCEEEecCCc
Q 045889 52 ---AC--VGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKS-LCKLDLHWPQ 119 (145)
Q Consensus 52 ---~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~-L~~L~l~~~~ 119 (145)
+. . ...+++|+.|+++++. +..++ ..+.+++|+.|.+.+|... .+|..+.++++ |+.|++++|.
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred CccCChhh-hhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 11 1 3467899999999875 44777 7788999999999887644 89999999999 9999999985
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.08 E-value=2e-10 Score=88.32 Aligned_cols=115 Identities=23% Similarity=0.160 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCcEEEEecccCCCC--CchhccCCCCCCEEEeecccccCcEEEEecCCCC--------------------
Q 045889 2 VRSVYQFPPILTDLSLSNTELMED--PMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGF-------------------- 59 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-------------------- 59 (145)
+|.++..+++|++|++++|.+.+. .+..++++++|++|++++|.+.+...... ...+
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccCccCCEEECcCCCCCcchhhh
Confidence 455666677777777777766542 22346677777777777666554110000 1122
Q ss_pred --ccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 60 --PELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 60 --~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
++|+.|+++++. +..++.....+++|+.|.+.+|. +..+|.. +.++++|++|++++++
T Consensus 419 l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 419 LPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 455666665542 34455445567788888887754 4567775 7778888888888764
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.07 E-value=1.3e-10 Score=86.52 Aligned_cols=107 Identities=24% Similarity=0.225 Sum_probs=61.7
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+ +... ...+++|+.|+++++. +..++...+.+++
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECS-SSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcc-cCCCCCCCEEECCCCc-ceecCccccccCc
Confidence 4445566666666666555444556666666666666555433 2222 3346666666666553 4444444445666
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|. +..++ ++.+++|+.|++++++
T Consensus 320 L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 320 LENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 7777766654 33343 5667778888888775
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.06 E-value=6.9e-10 Score=86.26 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=71.6
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCc--hhccCCCCCCEEEeecccccCcEEEEecCCC---------------------
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPM--PMMEKLPRPQVLKLKQNSYLGRKLACVGSGG--------------------- 58 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------------------- 58 (145)
+|.++..+++|++|++++|.+++.+. ..++++++|++|++++|.+.+...... ...
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCCCTTCCEEECCSSCCCGGGGSS
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcCcccCCEEECCCCCCCcchhhh
Confidence 35566667777777777776665432 346677777777776666544110000 111
Q ss_pred C-ccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 59 F-PELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 59 ~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
+ ++|+.|+++++ .+..++.....+++|+.|.+.+|. +..+|.. +..+++|+.|++++++
T Consensus 448 l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 448 LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 2 46666666655 345566555677788888887654 4567776 7788888888888765
No 76
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=3.1e-11 Score=80.71 Aligned_cols=105 Identities=18% Similarity=0.079 Sum_probs=61.0
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCC-CCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKL-PRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMP 84 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 84 (145)
..+.+|+.|++++|.++.. +.+..+ ++|++|++++|.+.+ . .. ...+++|++|+++++. +..++... +.++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~-~--~~-l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRK-L--DG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALP 88 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCE-E--CC-CCCCSSCCEEECCSSC-CCEECSCHHHHCT
T ss_pred CCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCc-c--cc-cccCCCCCEEECCCCc-ccccCcchhhcCC
Confidence 3456677777777766543 234433 377777776666543 1 12 4456677777776553 44444332 4566
Q ss_pred CCceeeeccCcccCCCCc--cCCCCCCCCEEEecCCc
Q 045889 85 KLESLIANPCAYLRKLPK--ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~ 119 (145)
+|+.|.+.+|. ++.+|. .+.++++|+.|++++|+
T Consensus 89 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 89 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence 77777776543 455555 56666667777776664
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.02 E-value=6.3e-10 Score=90.44 Aligned_cols=110 Identities=20% Similarity=0.106 Sum_probs=84.8
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccE-EEcCCCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEW-TMGAGAMPKL 86 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 86 (145)
.+++|++|+|++|.+++..+..++++++|++|++++|...+...+.. ...+++|++|+++++. +..+ +...+.+++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSK-IYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCC-CCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCc-CcccCHhHccCCccc
Confidence 56889999999999887777788999999999998775544221222 4578899999998775 4444 3445678899
Q ss_pred ceeeeccCcccCCCCcc--CCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLPKE--LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~~--l~~l~~L~~L~l~~~~ 119 (145)
+.|.+..|...+.+|.. ++++++|++|++++|.
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence 99999888766666664 8899999999998874
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.02 E-value=1.1e-09 Score=79.84 Aligned_cols=105 Identities=19% Similarity=0.125 Sum_probs=71.3
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCce
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLES 88 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 88 (145)
.++|++|++++|.+.+.++..++++++|++|++++|.+.+ ..+.. ...+++|++|+++++. +..++.. .+++|+.
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-~~~l~~L~~L~L~~n~-l~~l~~~--~~~~L~~ 127 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKA-FSPLRKLQKLYISKNH-LVEIPPN--LPSSLVE 127 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGG-STTCTTCCEEECCSSC-CCSCCSS--CCTTCCE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhH-hhCcCCCCEEECCCCc-CCccCcc--ccccCCE
Confidence 3678888888888776665678888888888887776543 21222 4567888888887653 4444433 2377888
Q ss_pred eeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 89 LIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 89 L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
|.+.+|. +..+|. .+.++++|+.|+++++.
T Consensus 128 L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 128 LRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp EECCSSC-CCCCCSGGGSSCSSCCEEECCSCC
T ss_pred EECCCCc-cCccCHhHhCCCccCCEEECCCCc
Confidence 8887654 445554 46778888888887764
No 79
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=4.2e-10 Score=75.15 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE--cCCCCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM--GAGAMP 84 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~ 84 (145)
...++|++|++++|.+++. ..++.+++|++|++++|.+.+ ++......+++|+.|+++++. +..++. ..+.++
T Consensus 39 ~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 39 ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLK 113 (176)
T ss_dssp GGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCT
T ss_pred hcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCC
Confidence 3445999999999998764 578899999999999888754 221101358999999999874 455543 456789
Q ss_pred CCceeeeccCcccCCCCcc----CCCCCCCCEEEecCCcHH
Q 045889 85 KLESLIANPCAYLRKLPKE----LWCVKSLCKLDLHWPQTE 121 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~----l~~l~~L~~L~l~~~~~~ 121 (145)
+|+.|.+.+|.. ..+|.. +..+++|+.|+++.+...
T Consensus 114 ~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 114 SLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998764 467775 889999999999999743
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=6.2e-10 Score=82.30 Aligned_cols=108 Identities=21% Similarity=0.091 Sum_probs=84.4
Q ss_pred CCCCcEEEEecccCCCCCchhcc-CCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCC
Q 045889 9 PPILTDLSLSNTELMEDPMPMME-KLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKL 86 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L 86 (145)
.+.++.|+|++|.+++.+...+. ++++|++|++++|.+.+ ..... ...+++|+.|+++++. +..++.. .+.+++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEA-FVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTT-TTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhh-ccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 45789999999999887766777 99999999999887754 21112 4568999999999875 5655442 4578999
Q ss_pred ceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 87 ESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+.|.+.+|......|..+.++++|+.|+++++.
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 999998876544446688999999999999874
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.02 E-value=1e-09 Score=79.86 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=22.1
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccc
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 46 (145)
.+..+++|++|++++|.+.+..+..++++++|++|++++|.+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 344555555555555555544444455555555555555443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.01 E-value=7.5e-10 Score=77.19 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=73.3
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc-ccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS-YLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPK 85 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~ 85 (145)
..++|++|++++|.+++.+...++.+++|++|++++|. ... ..... ...+++|+.|++.++..+..++.. .+.+++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTT-EESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhH-cCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 34589999999999988776788999999999999886 432 11111 235788999999863345555422 235677
Q ss_pred CceeeeccCcccCCCCccCCCCCCCC---EEEecCC
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLC---KLDLHWP 118 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~---~L~l~~~ 118 (145)
|+.|.+.+|. +..+|. ++++++|+ .|+++++
T Consensus 107 L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 107 LKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred CCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 8888887654 344665 55566665 6666665
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=4.8e-10 Score=87.77 Aligned_cols=102 Identities=21% Similarity=0.200 Sum_probs=82.9
Q ss_pred CCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCceee
Q 045889 11 ILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESLI 90 (145)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 90 (145)
.|+.|++++|.+++.+ .++.+++|++|++++|.+.. ++.. ...+++|+.|+++++. +..++ ..+.+++|+.|.
T Consensus 442 ~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA--LPPA-LAALRCLEVLQASDNA-LENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC--CCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCCCc--CccccccCcEeecCcccccc--cchh-hhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEE
Confidence 5889999999998754 38999999999999888763 2333 5578999999999774 55566 778899999999
Q ss_pred eccCcccCCC-CccCCCCCCCCEEEecCCc
Q 045889 91 ANPCAYLRKL-PKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 91 l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~ 119 (145)
+.+|...+.. |..++++++|+.|++++|+
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9887544433 8899999999999999986
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=83.23 Aligned_cols=110 Identities=22% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcE-E--EEecCCCCccccEEeccCCCCCccEEEc----C
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRK-L--ACVGSGGFPELKVLNLKSMYWLDEWTMG----A 80 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~ 80 (145)
.+++|++|++++|.+.+.++..++.+++|++|++++|.+.+.. . ... ...+++|++|+++++. +..++.. .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC-PHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC-TTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh-hhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 3556666666666665555556666677777777666543210 0 000 1245556666665543 2211110 1
Q ss_pred CCCCCCceeeeccCcccCCCCccCCCC---CCCCEEEecCCc
Q 045889 81 GAMPKLESLIANPCAYLRKLPKELWCV---KSLCKLDLHWPQ 119 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~lp~~l~~l---~~L~~L~l~~~~ 119 (145)
+.+++|+.|.+++|...+..|..++.+ ++|++|++++|.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence 234566666665554433345555444 466666666553
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.97 E-value=2.8e-09 Score=84.39 Aligned_cols=115 Identities=26% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcE-------EEEecCCCCccccEEeccCCCCCc
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRK-------LACVGSGGFPELKVLNLKSMYWLD 74 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~ 74 (145)
+|.++..+++|++|++++|.+++.+...++.+++|++|++++|.+.+-. .... ...+++|+.|+++++. +.
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~N~-l~ 549 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILNLESNG-FD 549 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT-TTTCTTCCEEECCSSC-CC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh-hcCCCCCCEEECCCCC-CC
Confidence 4667788899999999999988877677889999999999888765310 0111 3467899999998764 55
Q ss_pred cEEEc-CCCCCCCceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 75 EWTMG-AGAMPKLESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 75 ~~~~~-~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
.++.. .+.+++|+.|.+.++. +..+|.+ +.++++|+.|++++|.
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCc
Confidence 55543 4578899999997654 5567775 5788999999998873
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.97 E-value=1.4e-09 Score=79.17 Aligned_cols=104 Identities=19% Similarity=0.116 Sum_probs=69.4
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCce
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLES 88 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 88 (145)
.++|++|++++|.+++.+...++++++|++|++++|.+.+. .+.. ...+++|++|+++++. +..++.. .+++|+.
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~--~~~~L~~ 125 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGA-FAPLVKLERLYLSKNQ-LKELPEK--MPKTLQE 125 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTT-TTTCTTCCEEECCSSC-CSBCCSS--CCTTCCE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHH-hcCCCCCCEEECCCCc-CCccChh--hcccccE
Confidence 46899999999999887767899999999999998877652 1222 4567889999998764 4444322 2356666
Q ss_pred eeeccCcccCCCCc-cCCCCCCCCEEEecCC
Q 045889 89 LIANPCAYLRKLPK-ELWCVKSLCKLDLHWP 118 (145)
Q Consensus 89 L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 118 (145)
|.+.+|... .++. .+.++++|+.|+++++
T Consensus 126 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 126 LRVHENEIT-KVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp EECCSSCCC-BBCHHHHTTCTTCCEEECCSS
T ss_pred EECCCCccc-ccCHhHhcCCccccEEECCCC
Confidence 666654322 2322 3455555555555554
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.97 E-value=3.7e-10 Score=81.88 Aligned_cols=110 Identities=23% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCCCCcEEEEecccCCCCCchhc--cCCCCCCEEEeecccccCcEEEEec--CCCCccccEEeccCCCCCccEE-EcCCC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMM--EKLPRPQVLKLKQNSYLGRKLACVG--SGGFPELKVLNLKSMYWLDEWT-MGAGA 82 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 82 (145)
.+++|++|++++|.+.+..+..+ +.+++|++|++++|.+.+....+.. ...+++|++|+++++. +..++ ...+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 35667777777776665444433 6667777777766665542100000 0012566666666543 22222 23345
Q ss_pred CCCCceeeeccCcccCC--CCccC--CCCCCCCEEEecCC
Q 045889 83 MPKLESLIANPCAYLRK--LPKEL--WCVKSLCKLDLHWP 118 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~--lp~~l--~~l~~L~~L~l~~~ 118 (145)
+++|+.|.+++|...+. +|..+ +++++|++|++++|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 56666666655543322 22222 55566666666555
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.97 E-value=1.9e-09 Score=84.58 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=77.7
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE-cCC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM-GAG 81 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~ 81 (145)
|..+..+++|++|+|++|.+.+.++..++++++|++|++++|.+.+ ++......+++|++|+++++. +..++. ..+
T Consensus 92 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 168 (597)
T 3oja_B 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ 168 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTT
T ss_pred hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCEEEeeCCc-CCCCChhhhh
Confidence 3467889999999999999988887788999999999999887764 121102468899999998775 444333 356
Q ss_pred CCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 82 AMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.+++|+.|.+.+|.. ..++ ++.+++|+.|+++++
T Consensus 169 ~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 169 ATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp TCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSS
T ss_pred cCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccC
Confidence 788999999987653 3333 344555555555444
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.96 E-value=2.7e-09 Score=75.74 Aligned_cols=103 Identities=22% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMP 84 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (145)
.+..+++|++|++++|.+.+.+. ++++++|++|++++|.+.+- ... .. ++|+.|+++++. +..++ ..+.++
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~~---~~-~~L~~L~L~~N~-l~~~~-~l~~l~ 128 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NGI---PS-ACLSRLFLDNNE-LRDTD-SLIHLK 128 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TTC---CC-SSCCEEECCSSC-CSBSG-GGTTCT
T ss_pred HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Ccc---cc-CcccEEEccCCc-cCCCh-hhcCcc
Confidence 35566778888888887766543 77778888888877766541 011 11 555555555442 22221 233455
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+|+.|.+.+|. ++.++ .++.+++|+.|++++|
T Consensus 129 ~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 129 NLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp TCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS
T ss_pred cccEEECCCCc-CCCCh-HHccCCCCCEEECCCC
Confidence 55555554433 22332 3444455555555444
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=1.1e-09 Score=85.64 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccE--EEc
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEW--TMG 79 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~ 79 (145)
+|. ++.+++|+.|++++|.++.. +..++++++|++|++++|.+.+ ++ . ...+++|+.|+++++. +..+ +..
T Consensus 456 lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~--lp-~-l~~l~~L~~L~Ls~N~-l~~~~~p~~ 528 (567)
T 1dce_A 456 LCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN--VD-G-VANLPRLQELLLCNNR-LQQSAAIQP 528 (567)
T ss_dssp CCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC--CG-G-GTTCSSCCEEECCSSC-CCSSSTTGG
T ss_pred CcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC--Cc-c-cCCCCCCcEEECCCCC-CCCCCCcHH
Confidence 565 78889999999999999854 4689999999999999998876 23 4 6689999999999875 5555 566
Q ss_pred CCCCCCCceeeeccCcccCCCCccC----CCCCCCCEEEe
Q 045889 80 AGAMPKLESLIANPCAYLRKLPKEL----WCVKSLCKLDL 115 (145)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~lp~~l----~~l~~L~~L~l 115 (145)
.+.+++|+.|.+.+|.. ..+|+.+ ..+++|+.|++
T Consensus 529 l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred HhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 77899999999998764 4455543 33788888864
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.94 E-value=3e-09 Score=77.73 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|++|++++|.+...+. +..+++|++|++++|.+..- . . ...+++|++|++.++. +..++. ...+++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~-~-~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--S-A-LQNLTNLRELYLNEDN-ISDISP-LANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G-G-GTTCTTCSEEECTTSC-CCCCGG-GTTCTT
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--h-H-HcCCCcCCEEECcCCc-ccCchh-hccCCc
Confidence 4556777777777777665432 67777777777776655431 1 1 3456677777776543 322222 345566
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
|+.|.+.+|.....++. +.++++|++|+++++
T Consensus 134 L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165 (347)
T ss_dssp CCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS
T ss_pred eeEEECCCCCCcccccc-hhhCCCCcEEEecCC
Confidence 66666665544433322 444555555555444
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.94 E-value=4.1e-10 Score=81.62 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=32.3
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCC-----CCCCEEEeecccccCcEEEEecCCCCccccEEeccCCC
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKL-----PRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMY 71 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 71 (145)
..+++|++|++++|.+.+. +..++.+ ++|++|++++|.+.+.. ... ...+++|+.|+++++.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQ-VRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTT-CCCCSSCCEEECCSCT
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch-HHH-hccCCCCCEEECCCCC
Confidence 5666777777777766655 2334433 56666666655543311 111 2345555555555443
No 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.94 E-value=8.7e-10 Score=80.61 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|++|++++|.+...+. +..+++|++|++++|.+.+- .. ...+++|+.|+++++. +..++ ..+.+++
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~ 288 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---NA-VKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQ 288 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTT
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---hh-HhcCCCcCEEEccCCc-cCCCh-hhcCCCC
Confidence 4567889999999998876543 78889999999988876552 12 4568888888888764 44442 3456788
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|...+..|..++++++|+.|++++|+
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 8888888876555555667788888888888875
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=2.3e-09 Score=77.72 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=41.6
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|++|++++|.+.+.+. +..+++|++|++++|.+.+-. . ...+++|+.|+++++. +..++ ..+.+++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~ 130 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---A-IAGLQSIKTLDLTSTQ-ITDVT-PLAGLSN 130 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---G-GTTCTTCCEEECTTSC-CCCCG-GGTTCTT
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch---h-hcCCCCCCEEECCCCC-CCCch-hhcCCCC
Confidence 4456677777777776655432 666667777777666554311 1 2345555555555443 22221 1334444
Q ss_pred Cceeeecc
Q 045889 86 LESLIANP 93 (145)
Q Consensus 86 L~~L~l~~ 93 (145)
|+.|.+.+
T Consensus 131 L~~L~l~~ 138 (308)
T 1h6u_A 131 LQVLYLDL 138 (308)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 44444444
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.93 E-value=6.4e-10 Score=85.44 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=57.2
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE----------
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM---------- 78 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 78 (145)
+++|++|+|++|.+.+.++..++.+++|++|++++|.+.+. .+ ...+++|+.|+++++. +..++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~---l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD---LESLSTLRTLDLNNNY-VQELLVGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE---CTTCTTCCEEECCSSE-EEEEEECTTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc---cccCCCCCEEEecCCc-CCCCCCCCCcCEEECc
Confidence 34677777777777666656677777777777766665431 11 2345555555555432 222111
Q ss_pred -------cCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 79 -------GAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 79 -------~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
....+++|+.|.+.+|...+..|..++++++|+.|++++|
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 0123555666666555443333445555666666666655
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.93 E-value=8.4e-10 Score=80.14 Aligned_cols=107 Identities=19% Similarity=0.113 Sum_probs=77.1
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCce
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLES 88 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 88 (145)
+++|++|++++|.+++.+...++.+++|++|++++|.+.+.....- ...+++|+.|+++++. +..++ ....+++|+.
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~-~~~~l~~L~~ 195 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNF-IYDVK-GQVVFAKLKT 195 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSC-CCEEE-CCCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-hhccCcCCEEECCCCc-Ccccc-cccccccCCE
Confidence 4667778888887776655567778888888888777654221111 1246889999998764 55553 3345889999
Q ss_pred eeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 89 LIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 89 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|.+.+|. +..+|..+..+++|+.|++++|.
T Consensus 196 L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 196 LDLSSNK-LAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECCSSC-CCEECGGGGGGTTCSEEECTTSC
T ss_pred EECCCCc-CCcchhhhcccCcccEEECcCCc
Confidence 9998764 55677888889999999999885
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.92 E-value=3.2e-09 Score=76.38 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=17.5
Q ss_pred CCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccc
Q 045889 7 QFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 46 (145)
..+++|++|++++|.+.+.+. ++++++|++|++++|.+
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 334455555555555443321 44444444444444443
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.91 E-value=3.1e-09 Score=77.02 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=50.0
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|++|++++|.+.+. +.+..+++|++|++++|.+.+-. . ...+++|+.|++.++. +..++. .+.+++
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~ 152 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT---P-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTN 152 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG---G-GTTCTTCCEEECCSSC-CCCCGG-GGGCTT
T ss_pred HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch---h-hcCCCCCCEEECCCCc-cCcCcc-ccCCCC
Confidence 45666777777777766543 35666667777777666554311 1 2345555555555442 222211 233444
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
|+.|.+.+|. +..++. +.++++|+.|++++|
T Consensus 153 L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 153 LQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred ccEEEccCCc-CCCChh-hcCCCCCCEEECCCC
Confidence 4444444432 222222 334444444444433
No 99
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=1.8e-09 Score=73.14 Aligned_cols=91 Identities=21% Similarity=0.130 Sum_probs=71.9
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccE-EEcCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEW-TMGAGAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 83 (145)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .... ...+++|++|++.++. +..+ +...+.+
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 125 (192)
T 1w8a_A 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKM-FLGLHQLKTLNLYDNQ-ISCVMPGSFEHL 125 (192)
T ss_dssp SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSS-STTCTTCCEEECCSSC-CCEECTTSSTTC
T ss_pred ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHH-hcCCCCCCEEECCCCc-CCeeCHHHhhcC
Confidence 377889999999999999988778899999999999999887652 2222 4568999999999875 4433 3445678
Q ss_pred CCCceeeeccCcccC
Q 045889 84 PKLESLIANPCAYLR 98 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~ 98 (145)
++|+.|.+.+++..+
T Consensus 126 ~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 126 NSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCCEEECTTCCBCC
T ss_pred CCCCEEEeCCCCccC
Confidence 999999998876543
No 100
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.91 E-value=4.2e-09 Score=76.74 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=72.2
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CC
Q 045889 3 RSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AG 81 (145)
Q Consensus 3 P~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~ 81 (145)
|..+..+++|++|++++|.+.+..+..++++++|++|++++|.+.. + + ...+++|++|++.++. +..++.. .+
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l--~-~~~~~~L~~L~l~~n~-i~~~~~~~~~ 144 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--I--P-PNLPSSLVELRIHDNR-IRKVPKGVFS 144 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--C--C-SSCCTTCCEEECCSSC-CCCCCSGGGS
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--c--C-ccccccCCEEECCCCc-cCccCHhHhC
Confidence 4467889999999999999988777889999999999998887653 1 1 2234788888887654 3444332 35
Q ss_pred CCCCCceeeeccCccc--CCCCccCCCCCCCCEEEecC
Q 045889 82 AMPKLESLIANPCAYL--RKLPKELWCVKSLCKLDLHW 117 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l--~~lp~~l~~l~~L~~L~l~~ 117 (145)
.+++|+.|.+.++... +..|..+..+ +|++|++++
T Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 145 GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 6777777777765432 2334444444 444444443
No 101
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=4.3e-09 Score=70.01 Aligned_cols=101 Identities=24% Similarity=0.224 Sum_probs=70.5
Q ss_pred CcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCCCCceee
Q 045889 12 LTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMPKLESLI 90 (145)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ 90 (145)
.+.++++++.++..+. .+ .++|++|++++|.+.+-. ... ...+++|++|+++++. +..++... +.+++|+.|.
T Consensus 11 ~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~-~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLE-PGV-FDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCC-TTT-TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccC-hhh-hcCcccCCEEECCCCC-cCccChhhccCCCCCCEEE
Confidence 4677888887776542 22 377888888888776521 111 3467888888888764 55555443 5788899999
Q ss_pred eccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 91 ANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 91 l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+.++. +..+|. .+.++++|+.|++++++
T Consensus 85 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 97754 556666 47889999999998874
No 102
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=3e-09 Score=71.10 Aligned_cols=100 Identities=23% Similarity=0.182 Sum_probs=68.3
Q ss_pred cEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCCCCceeee
Q 045889 13 TDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMPKLESLIA 91 (145)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l 91 (145)
+.++++++.+...+. .+ .++|++|++++|.+.+- .+.. ...+++|++|+++++. +..++... +.+++|+.|.+
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKL-EPGV-FDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCcccc-CHHH-hcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEEC
Confidence 567778877765442 23 27788888887776552 1212 3467888888888763 55555443 56788888888
Q ss_pred ccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 92 NPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 92 ~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
.+|. +..+|.. +.++++|+.|++++++
T Consensus 89 ~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 89 NDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 7754 5567664 7888999999998875
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.90 E-value=3.7e-09 Score=76.03 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|++|++++|.+.+. +.++.+++|++|++++|.+.+- .. ...+++|+.|+++++. +..+ ...+.+++
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~---~~-l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~ 157 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI---NG-LVHLPQLESLYLGNNK-ITDI-TVLSRLTK 157 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC---GG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTT
T ss_pred cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC---hh-hcCCCCCCEEEccCCc-CCcc-hhhccCCC
Confidence 56778888999988887653 4588888899999888876552 12 3467888888888764 4433 34457788
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|. +..++. +.++++|+.|++++|.
T Consensus 158 L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 158 LDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCEEEccCCc-cccchh-hcCCCccCEEECCCCc
Confidence 9999888764 444544 7888899999998874
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=7.8e-09 Score=69.09 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-C
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-A 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 80 (145)
+|..+ .++|++|++++|.+.+.++..++++++|++|++++|.+.+- +......+++|+.|++.++. +..++.. .
T Consensus 27 iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 101 (174)
T 2r9u_A 27 VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI--PTGVFDKLTQLTQLDLNDNH-LKSIPRGAF 101 (174)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc--ChhHhCCcchhhEEECCCCc-cceeCHHHh
Confidence 45544 38999999999999988878899999999999999987652 21102468999999999764 5566554 5
Q ss_pred CCCCCCceeeeccCccc
Q 045889 81 GAMPKLESLIANPCAYL 97 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l 97 (145)
+.+++|+.|.+.+++..
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 67899999999887643
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.87 E-value=7.3e-12 Score=91.25 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=14.8
Q ss_pred CCCCceeeeccCcc-cCCCCccCCCCCCCCEEEecCC
Q 045889 83 MPKLESLIANPCAY-LRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 83 ~~~L~~L~l~~~~~-l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+++|+.|.+.+|.. ....+..+.++++|++|++++|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 34444444444331 1223333444444444444444
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.86 E-value=3.5e-09 Score=83.50 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=15.2
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS 45 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 45 (145)
.+++|+.|+|++|.+.+.++ +..+++|+.|+|++|.
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 34444444444444433221 3344444444444333
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.86 E-value=1.9e-08 Score=76.70 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=29.9
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSM 70 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 70 (145)
+..+++|++|++++|.+++.+ ++.+++|++|++++|.+.+. + ...+++|++|+++++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~----~-~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL----D-VTPLTKLTYLNCDTN 116 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC----C-CTTCTTCCEEECCSS
T ss_pred hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee----e-cCCCCcCCEEECCCC
Confidence 445566666666666655532 45556666666655554442 1 234455555555443
No 108
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=3.2e-09 Score=72.11 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-C
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-A 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 80 (145)
+|..+..+++|++|++++|.++..+...+..+++|++|++++|.+.+-. ... ...+++|+.|++.++. +..++.. .
T Consensus 46 ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~-f~~l~~L~~L~L~~N~-l~~~~~~~~ 122 (193)
T 2wfh_A 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRT-FDGLKSLRLLSLHGND-ISVVPEGAF 122 (193)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTT-TTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHH-hCCCCCCCEEECCCCC-CCeeChhhh
Confidence 5667788899999999999999888778999999999999988876521 112 4568999999999764 5555543 4
Q ss_pred CCCCCCceeeeccCcc
Q 045889 81 GAMPKLESLIANPCAY 96 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~ 96 (145)
..+++|+.|.+.+++.
T Consensus 123 ~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 123 NDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hcCccccEEEeCCCCe
Confidence 5688999999987764
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=8.1e-09 Score=81.39 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+.+. .. ...+++|+.|+++++. +..++. .+.+++
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~ 176 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TV-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTK 176 (605)
T ss_dssp STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---GG-GGSCTTCSEEECCSSC-CCCCGG-GTTCTT
T ss_pred hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---hh-hcccCCCCEEECcCCc-CCCchh-hccCCC
Confidence 33444444444444444332 2344445555555544444331 11 2345556666655443 222211 445566
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
|+.|.+.+|. +..+ ..+.++++|+.|++++|
T Consensus 177 L~~L~Ls~N~-i~~l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 177 LQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CCEEECCSSC-CCBC-GGGTTCTTCSEEECCSE
T ss_pred CCEEECcCCC-CCCC-hHHccCCCCCEEEccCC
Confidence 6666665543 2333 24556666666666655
No 110
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=4.9e-09 Score=69.84 Aligned_cols=91 Identities=23% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAM 83 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 83 (145)
.+..+++|++|++++|.+++.+...++.+++|++|++++|.+.+.. ... ...+++|++|++.++. +..++... ..+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~l 123 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGV-FDKLTQLKELALDTNQ-LKSVPDGIFDRL 123 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHH-hhCCcccCEEECcCCc-ceEeCHHHhcCC
Confidence 4678899999999999998877677899999999999988876521 111 3468999999999774 55665543 568
Q ss_pred CCCceeeeccCcccC
Q 045889 84 PKLESLIANPCAYLR 98 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~ 98 (145)
++|+.|.+.+|+..+
T Consensus 124 ~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 124 TSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cccCEEEecCCCeec
Confidence 999999999876543
No 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.84 E-value=2.8e-08 Score=75.79 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=29.8
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKS 69 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 69 (145)
++.+++|++|++++|.+++.+ ++++++|++|++++|.+.+- . ...+++|++|++.+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l----~-~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL----D-VSQNPLLTYLNCAR 136 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC----C-CTTCTTCCEEECTT
T ss_pred cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee----c-CCCCCcCCEEECCC
Confidence 445566666666666665532 55566666666665554431 1 22344455554443
No 112
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=1.1e-08 Score=68.10 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-C
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-A 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 80 (145)
+|..+ .++|++|++++|.+++.++..+..+++|++|++++|.+.+-. ... ...+++|+.|++.++. +..++.. .
T Consensus 24 ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~-f~~l~~L~~L~L~~N~-l~~~~~~~~ 98 (170)
T 3g39_A 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGV-FDKLTQLTQLSLNDNQ-LKSIPRGAF 98 (170)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhh-ccCCCCCCEEECCCCc-cCEeCHHHh
Confidence 45443 489999999999999888788999999999999999876521 111 3468999999999774 5566543 5
Q ss_pred CCCCCCceeeeccCccc
Q 045889 81 GAMPKLESLIANPCAYL 97 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l 97 (145)
+.+++|+.|.+.+++..
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 67899999999887643
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.81 E-value=7e-09 Score=78.94 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=48.7
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEe-------------------cCCCCccccEEe
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACV-------------------GSGGFPELKVLN 66 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------------~~~~~~~L~~L~ 66 (145)
+..+++|++|++++|.+.+.+. +..+++|++|++++|.+.+.. .+. ....+++|+.|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 337 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 337 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEE
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch-hhcCCCCCCEEECcCCcCCCchhhccCccCCEeE
Confidence 3445555666665555544332 445555555555544443311 011 012344555555
Q ss_pred ccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 67 LKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+.++. +..+ ...+.+++|+.|.+.+|...+..| +.++++|+.|++++|
T Consensus 338 l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 338 FYNNK-VSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CCSSC-CCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CCCCc-cCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 54442 2222 123345555555555544333222 555566666666554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.81 E-value=1.1e-08 Score=72.65 Aligned_cols=103 Identities=18% Similarity=0.112 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPK 85 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 85 (145)
+..+++|++|++++|.+++.+ .+.. ++|++|++++|.+.+- . . ...+++|+.|+++++. +..++ ..+.+++
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~-~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~ 151 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--D-S-LIHLKNLEILSIRNNK-LKSIV-MLGFLSK 151 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--G-G-GTTCTTCCEEECTTSC-CCBCG-GGGGCTT
T ss_pred hccCCCCCEEECCCCccCCcC--cccc-CcccEEEccCCccCCC--h-h-hcCcccccEEECCCCc-CCCCh-HHccCCC
Confidence 678899999999999987754 2334 8999999998887652 1 2 4578999999999765 55553 4567899
Q ss_pred CceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 86 LESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 86 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
|+.|.+.+|.. ..+ ..+..+++|+.|++++++
T Consensus 152 L~~L~L~~N~i-~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 152 LEVLDLHGNEI-TNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCEEECTTSCC-CBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCEEECCCCcC-cch-HHhccCCCCCEEeCCCCc
Confidence 99999988754 344 678889999999998874
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.79 E-value=1.4e-10 Score=84.42 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=60.1
Q ss_pred CCCCCCCcEEEEecccCCCC-CchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCcc--EEEcCCC
Q 045889 6 YQFPPILTDLSLSNTELMED-PMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDE--WTMGAGA 82 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~ 82 (145)
+..+++|++|++++|.+... .+..+.++++|++|++++|.+.+.... . ...+++|++|++.++..+.. ++...+.
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-T-LAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-H-HTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-H-HhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 34456777777777766543 224456677777777766654332111 1 23466677777766533331 2222334
Q ss_pred CCCCceeeeccCcccCC--CCccCCCCC-CCCEEEecCC
Q 045889 83 MPKLESLIANPCAYLRK--LPKELWCVK-SLCKLDLHWP 118 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~--lp~~l~~l~-~L~~L~l~~~ 118 (145)
+++|+.|.+.+|..+.. ++..+.+++ +|++|++++|
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 56666666666522321 344455566 6666666665
No 116
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=7.8e-09 Score=75.70 Aligned_cols=98 Identities=18% Similarity=0.005 Sum_probs=42.0
Q ss_pred EEEecc-cCCCCCchhccCCCCCCEEEeec-ccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCCCCceeee
Q 045889 15 LSLSNT-ELMEDPMPMMEKLPRPQVLKLKQ-NSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMPKLESLIA 91 (145)
Q Consensus 15 L~L~~~-~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 91 (145)
++.+++ .++..| . +..+++|+.|+|++ |.+.+ ..... ...+++|+.|+++++. +..++.. .+.+++|+.|.+
T Consensus 13 v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~-~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQH-LELRD-LRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCE-ECGGG-SCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCC-cChhH-hccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence 344444 444433 2 55555555555543 43322 11111 2345555555555442 3333322 234555555555
Q ss_pred ccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 92 NPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 92 ~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
.+|. +..+|..+....+|+.|++.++
T Consensus 88 ~~N~-l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 88 SFNA-LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred CCCc-cceeCHHHcccCCceEEEeeCC
Confidence 4432 3344443322222555555544
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=1.6e-11 Score=83.66 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=80.9
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMP 84 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (145)
.+..+++|++|++++|.+.+.+ .+..+++|++|++++|.+.. ++.. ...+++|+.|++.++. +..++ ..+.++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~--l~~~-~~~~~~L~~L~L~~N~-l~~l~-~~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK--IENL-DAVADTLEELWISYNQ-IASLS-GIEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS--CSSH-HHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc--ccch-hhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence 5667889999999999988754 77889999999999887653 1111 2235899999998763 44444 445678
Q ss_pred CCceeeeccCcccCCCCc--cCCCCCCCCEEEecCCc
Q 045889 85 KLESLIANPCAYLRKLPK--ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~ 119 (145)
+|+.|.+.+|. +..++. .+.++++|++|++++|+
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 99999998764 444544 67889999999999986
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.74 E-value=4.3e-09 Score=76.13 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=48.3
Q ss_pred CCCCCCcEEEEecccCCCCCc----hhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCcc--EE--E
Q 045889 7 QFPPILTDLSLSNTELMEDPM----PMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDE--WT--M 78 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~--~ 78 (145)
..+++|++|++++|.+.+... ..+..+++|++|++++|.+.+. .... ...+++|++|+++++.-.+. ++ .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQ-VRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTS-CCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHH-hccCCCCCEEECCCCCCccchhhhHHH
Confidence 444555555555555443221 1223455555555555544321 1111 22455566666655432111 11 1
Q ss_pred cCCCCCCCceeeeccCcccCCCCcc----CCCCCCCCEEEecCCc
Q 045889 79 GAGAMPKLESLIANPCAYLRKLPKE----LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~l~~lp~~----l~~l~~L~~L~l~~~~ 119 (145)
..+.+++|+.|.+.+|. ++.++.. ++++++|++|++++|.
T Consensus 192 ~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp CTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred hhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 11345556666665543 2222221 2445666666666553
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=4.7e-08 Score=71.88 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-C
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-A 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 80 (145)
+|..+ ++++++|+|++|.++..+...+.++++|++|+|++|...+ .++......++++..+.+.++..+..++.. .
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 45443 4689999999999987776678999999999999887644 221110123444444433333334444322 2
Q ss_pred CCCCCCceeeeccC
Q 045889 81 GAMPKLESLIANPC 94 (145)
Q Consensus 81 ~~~~~L~~L~l~~~ 94 (145)
+.+++|+.|.+.++
T Consensus 101 ~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 101 QNLPNLQYLLISNT 114 (350)
T ss_dssp CCCTTCCEEEEEEE
T ss_pred hhcccccccccccc
Confidence 34566666666543
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.73 E-value=2.5e-08 Score=75.89 Aligned_cols=104 Identities=19% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMP 84 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (145)
.+..+++|++|++++|.+.+.+ .+..+++|++|++++|.+.+.. . ...+++|+.|++.++. +..++. .+.++
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~-~---~~~l~~L~~L~L~~n~-l~~~~~-~~~l~ 309 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS-P---LAGLTALTNLELNENQ-LEDISP-ISNLK 309 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-G---GTTCTTCSEEECCSSC-CSCCGG-GGGCT
T ss_pred hhhcCCCCCEEECCCCccccch--hhhcCCCCCEEECCCCccCccc-c---ccCCCccCeEEcCCCc-ccCchh-hcCCC
Confidence 3567899999999999987765 3889999999999988876522 1 2357777777777654 222221 34555
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+|+.|.+.+|...+ ++. ++.+++|+.|++++|
T Consensus 310 ~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 310 NLTYLTLYFNNISD-ISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp TCSEEECCSSCCSC-CGG-GGGCTTCCEEECCSS
T ss_pred CCCEEECcCCcCCC-chh-hccCccCCEeECCCC
Confidence 66666665553222 211 334444444444443
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.72 E-value=5.4e-08 Score=71.53 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCCCCCcE-EEEecccCCCCCchhccCCCCCCEEEeecccccCcE------------EE---------Ee--cCCCC-c
Q 045889 6 YQFPPILTD-LSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRK------------LA---------CV--GSGGF-P 60 (145)
Q Consensus 6 ~~~l~~L~~-L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~------------~~---------~~--~~~~~-~ 60 (145)
+..++++.. +.+.+|.+...++..+..+++|++|++++|.+.... +. .. ....+ .
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 444555443 344445555555455666666666666665543210 00 01 00112 2
Q ss_pred cccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 61 ELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 61 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
.++.|++.++ .+..++.......+|+.+.+.+++.++.+|.+ ++++++|+.|+++++.
T Consensus 155 ~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 155 ESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp SCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred hhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 4666777765 35666655556678888888888888888875 5888999999998874
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.64 E-value=3.7e-09 Score=84.92 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCC
Q 045889 2 VRSVYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAG 81 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (145)
+|..+..+++|++|+|++|.++.. +..++++++|++|+|++|.+.. ++.. ...+++|++|++.++. +..+|...+
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~L~~N~-l~~lp~~~~ 313 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTS--LPAE-LGSCFQLKYFYFFDNM-VTTLPWEFG 313 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSS--CCSS-GGGGTTCSEEECCSSC-CCCCCSSTT
T ss_pred CChhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCc--cChh-hcCCCCCCEEECCCCC-CCccChhhh
Confidence 566666889999999999999844 4678999999999999998763 3333 4568999999999874 677887788
Q ss_pred CCCCCceeeeccCcccCCCC
Q 045889 82 AMPKLESLIANPCAYLRKLP 101 (145)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~lp 101 (145)
.+++|+.|.+.+|...+.+|
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHH
T ss_pred cCCCccEEeCCCCccCCCCh
Confidence 99999999999876554433
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.61 E-value=1.6e-07 Score=74.25 Aligned_cols=75 Identities=24% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEE
Q 045889 34 PRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKL 113 (145)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 113 (145)
++|++|++++|.+.+ ++ ..+++|+.|+++++. +..++. .+++|+.|.+.+|. +..+|..++++++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~--lp----~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTS--LP----VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSC--CC----CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCCccCc--CC----CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEE
Confidence 556666666555443 11 246778888887763 555543 56889999998764 55899999999999999
Q ss_pred EecCCc
Q 045889 114 DLHWPQ 119 (145)
Q Consensus 114 ~l~~~~ 119 (145)
++++|+
T Consensus 290 ~L~~N~ 295 (622)
T 3g06_A 290 NLEGNP 295 (622)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 999986
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.59 E-value=2.1e-07 Score=72.89 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=57.5
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcCCCCCCC--
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGAGAMPKL-- 86 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-- 86 (145)
+++|+.|++++|.+++.+. .+++|++|++++|.+.+ ++ . ..++|+.|+++++. +..++. ... +|
T Consensus 139 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~----lp-~-l~~~L~~L~Ls~N~-L~~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF----LP-E-LPESLEALDVSTNL-LESLPA-VPV--RNHH 204 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC----CC-C-CCTTCCEEECCSSC-CSSCCC-CC-------
T ss_pred CccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC----cc-h-hhCCCCEEECcCCC-CCchhh-HHH--hhhc
Confidence 3455555555555544221 34556666665555443 11 1 11577777777653 444443 221 56
Q ss_pred -----ceeeeccCcccCCCCccCCCCCCCCEEEecCCc
Q 045889 87 -----ESLIANPCAYLRKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 87 -----~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+.|.+.+| .+..+|.++.++++|+.|++++|+
T Consensus 205 ~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 205 SEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred ccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 88888775 466799989889999999999985
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.56 E-value=5.4e-07 Score=68.63 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=48.7
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcE------------------EEEecCCCCccccEEeccCCC
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRK------------------LACVGSGGFPELKVLNLKSMY 71 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~------------------~~~~~~~~~~~L~~L~l~~~~ 71 (145)
++|++|++++|.+++.+ .++++++|++|++++|.+.+-. ++ . ...+++|+.|++.++.
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCCc
Confidence 46666666666665533 4666666666666665544300 00 1 2234444444444332
Q ss_pred CCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 72 WLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 72 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+..++ ...++|+.|.+.+|. +..+|. ++++++|++|+++++
T Consensus 207 -l~~l~---~~~~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 207 -LKKLP---DLPLSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp -CSSCC---CCCTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSS
T ss_pred -CCcCC---CCcCcccEEECcCCc-CCcccc-cCCCCCCCEEECCCC
Confidence 11111 112345555555442 335553 566666677776665
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.55 E-value=4.6e-07 Score=71.04 Aligned_cols=52 Identities=27% Similarity=0.164 Sum_probs=24.4
Q ss_pred CccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccCCCCccCCCCCCCCEEEecCC
Q 045889 59 FPELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLRKLPKELWCVKSLCKLDLHWP 118 (145)
Q Consensus 59 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 118 (145)
+++|+.|+++++. +..++. .+++|+.|.+.+|. ++.+|. +. ++|+.|++++|
T Consensus 139 l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 139 PALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSS
T ss_pred CccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCC
Confidence 4445555555432 222221 34455555555443 333555 33 55566665555
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.8e-07 Score=68.46 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCcEEEEec-ccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC
Q 045889 2 VRSVYQFPPILTDLSLSN-TELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA 80 (145)
Q Consensus 2 lP~~~~~l~~L~~L~L~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 80 (145)
+|. +..+++|+.|+|++ |.+.+.+...++.+++|++|+|++|.+.+ ..+.. ...+++|+.|+|+++. +..++...
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~ 99 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDA-FHFTPRLSRLNLSFNA-LESLSWKT 99 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTG-GGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHH-hcCCcCCCEEeCCCCc-cceeCHHH
Confidence 688 88899999999996 99988887889999999999999998765 22212 3568999999999864 56666544
Q ss_pred CCCCCCceeeeccCcc
Q 045889 81 GAMPKLESLIANPCAY 96 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~ 96 (145)
.....|+.|.+.++..
T Consensus 100 ~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 100 VQGLSLQELVLSGNPL 115 (347)
T ss_dssp TCSCCCCEEECCSSCC
T ss_pred cccCCceEEEeeCCCc
Confidence 3334499999987653
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.47 E-value=4.8e-10 Score=83.34 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=24.4
Q ss_pred CCCCCCcEEEEecccCCCCC----chhccCCCCCCEEEeecccc
Q 045889 7 QFPPILTDLSLSNTELMEDP----MPMMEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 7 ~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~ 46 (145)
..+++|++|+|++|.+.... +..+.++++|++|++++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 45667777777777665532 23455666666666666554
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.47 E-value=2.3e-07 Score=70.67 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=30.9
Q ss_pred CccccEEeccCCCCCccEEEcCCCCCCCceeeeccCcccC--CCCccCCCC-------------CCCCEEEecCCc
Q 045889 59 FPELKVLNLKSMYWLDEWTMGAGAMPKLESLIANPCAYLR--KLPKELWCV-------------KSLCKLDLHWPQ 119 (145)
Q Consensus 59 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l-------------~~L~~L~l~~~~ 119 (145)
+++|+.|+++++. +..++. .+++|+.|.+.+|...+ .+|.+++++ ++|+.|++++++
T Consensus 336 ~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 336 PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 5677777777653 444443 46788888888776655 677788777 778888888775
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.46 E-value=1.5e-06 Score=68.79 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCC
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSM 70 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 70 (145)
++|++|++++|.++..+. .+++|++|++++|.+.. ++ ..+++|++|+++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~----lp--~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS----LP--VLPPGLLELSIFSN 111 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC----CC--CCCTTCCEEEECSC
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc----CC--CCCCCCCEEECcCC
Confidence 567777777776654332 45667777776665442 11 13455555555443
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.44 E-value=7.6e-10 Score=75.22 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=78.3
Q ss_pred CCCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEE--cCCC
Q 045889 5 VYQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTM--GAGA 82 (145)
Q Consensus 5 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~ 82 (145)
.+..+++|++|++++|.+...+ ..+..+++|++|++++|.+.+-. . ...+++|+.|++.++. +..++. ..+.
T Consensus 65 ~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l~---~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~ 138 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS---G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAA 138 (198)
T ss_dssp CHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCHH---H-HHHHHHSSEEEESEEE-CCCHHHHHHHTT
T ss_pred ccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcCC---c-cccCCCCCEEECCCCc-CCchhHHHHHhc
Confidence 5566789999999999988544 45667899999999999876621 2 3468899999998764 443332 3467
Q ss_pred CCCCceeeeccCcccCCCCcc----------CCCCCCCCEEE
Q 045889 83 MPKLESLIANPCAYLRKLPKE----------LWCVKSLCKLD 114 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~~lp~~----------l~~l~~L~~L~ 114 (145)
+++|+.|.+.+|...+..|.. +.++++|+.|+
T Consensus 139 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 899999999988765544432 67889999987
No 132
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=1.6e-07 Score=62.96 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=25.6
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS 45 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 45 (145)
-.|++|++++|.++...+..+..+++|+.|+|+++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 367777887777666556666777777777777664
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.34 E-value=7.2e-08 Score=71.57 Aligned_cols=36 Identities=17% Similarity=-0.026 Sum_probs=17.3
Q ss_pred CCCCceeeeccCcccC----CCCccC-CCCCCCCEEEecCC
Q 045889 83 MPKLESLIANPCAYLR----KLPKEL-WCVKSLCKLDLHWP 118 (145)
Q Consensus 83 ~~~L~~L~l~~~~~l~----~lp~~l-~~l~~L~~L~l~~~ 118 (145)
+++|+.|.+.+|.... .+|..+ .++++|+.|++++|
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 4555555555443322 244444 33555555555554
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.31 E-value=8.1e-09 Score=76.23 Aligned_cols=66 Identities=23% Similarity=0.172 Sum_probs=38.5
Q ss_pred CCCCCCCcEEEEecccCCCCCc----hhccCCC-CCCEEEeecccccCcEEE-Eec-C-CCCccccEEeccCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPM----PMMEKLP-RPQVLKLKQNSYLGRKLA-CVG-S-GGFPELKVLNLKSMY 71 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~-~~~-~-~~~~~L~~L~l~~~~ 71 (145)
+...++|++|++++|.+...+. ..+.+++ +|++|++++|.+.+.... +.. . ..+++|++|+++++.
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 4455667888888877776665 5566777 788888877766542111 000 0 012566666666554
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=1.3e-07 Score=70.23 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=67.0
Q ss_pred CCCCcEEEEecccCCCCCchhcc--CCCCCCEEEeec--ccccCcE-E-----EEecCCCCccccEEeccCCCCCcc---
Q 045889 9 PPILTDLSLSNTELMEDPMPMME--KLPRPQVLKLKQ--NSYLGRK-L-----ACVGSGGFPELKVLNLKSMYWLDE--- 75 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~--~~~~~~~-~-----~~~~~~~~~~L~~L~l~~~~~~~~--- 75 (145)
+++|+.|++..|.+.......++ .+|+|++|+|+. +...++. + ... ...||+|+.|++.+|.....
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHH
Confidence 45666666666655443333443 688888888853 2222211 1 122 24589999999987653221
Q ss_pred EEEcCCCCCCCceeeeccCcccC----CCCccCCCCCCCCEEEecCCc
Q 045889 76 WTMGAGAMPKLESLIANPCAYLR----KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 76 ~~~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.-+..+.+|+|+.|.++.|.... .++.++.++++|+.|+++.|.
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11233568899999997654222 255566778999999998875
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.04 E-value=4.8e-07 Score=66.70 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=15.5
Q ss_pred CCcEEEEecccCCCCCchhccCC-----CCCCEEEeecccc
Q 045889 11 ILTDLSLSNTELMEDPMPMMEKL-----PRPQVLKLKQNSY 46 (145)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~~ 46 (145)
+|++|++++|.+....+..+..+ ++|++|++++|.+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 44455555544444333333322 4444444444443
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.01 E-value=9.3e-08 Score=72.17 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCCCcEEEEecccCCCCC----chhccCCCCCCEEEeecccccCcEEEEecCCCCc----cccEEeccCCCCCc----cE
Q 045889 9 PPILTDLSLSNTELMEDP----MPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFP----ELKVLNLKSMYWLD----EW 76 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~ 76 (145)
+++|++|++++|.+.... ...+..+++|++|++++|.+.+.....- ...++ +|++|++.++.-.. .+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV-LQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH-HHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH-HHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 445555555555544221 1234445556666665554332111000 01122 46666665543110 22
Q ss_pred EEcCCCCCCCceeeeccCc
Q 045889 77 TMGAGAMPKLESLIANPCA 95 (145)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~ 95 (145)
+.....+++|+.|.+.+|.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHTTSCTTCCEEECCSSB
T ss_pred HHHHccCCceeEEECCCCc
Confidence 2233455566666665544
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.98 E-value=6.2e-07 Score=69.66 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=28.7
Q ss_pred CccccEEeccCCCCCc-cEEEcCCCCCCCceeeeccCcccC-CCCccCCCCCCCCEEEecCCc
Q 045889 59 FPELKVLNLKSMYWLD-EWTMGAGAMPKLESLIANPCAYLR-KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 59 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+++|+.|++.++.-.. .++.....+++|+.|.+.+|.... .++..+.++++|++|++++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 4455555555443111 111112345666666666665221 123333455666666666664
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.96 E-value=5.5e-07 Score=69.95 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCCCcEEEEecccCCCCCchhcc-CCCCCCEEEeecccccCc-EEEEecCCCCccccEEeccCCCCCcc-----EEEcC
Q 045889 8 FPPILTDLSLSNTELMEDPMPMME-KLPRPQVLKLKQNSYLGR-KLACVGSGGFPELKVLNLKSMYWLDE-----WTMGA 80 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~ 80 (145)
.+++|++|++++|.++...+..+. .+++|++|++++|...+. .+..- ...+++|++|++.++. +.. +....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH-HHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH-HHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 356777777777766554444444 577777777765532111 11111 1236677777776553 111 11112
Q ss_pred CCCCCCceeeeccCcccCCCCc-----cCCCCCCCCEEEecCC
Q 045889 81 GAMPKLESLIANPCAYLRKLPK-----ELWCVKSLCKLDLHWP 118 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~lp~-----~l~~l~~L~~L~l~~~ 118 (145)
..+++|+.|.+..|. ..+.. -+.++++|++|++++|
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 245567777666554 11211 1233466666666665
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.91 E-value=2.5e-07 Score=69.84 Aligned_cols=110 Identities=23% Similarity=0.295 Sum_probs=48.1
Q ss_pred CCCCCcEEEEecccCCCCCchhc-cCCC----CCCEEEeecccccCc---EEEEecCCCCccccEEeccCCCCCccEEE-
Q 045889 8 FPPILTDLSLSNTELMEDPMPMM-EKLP----RPQVLKLKQNSYLGR---KLACVGSGGFPELKVLNLKSMYWLDEWTM- 78 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l-~~l~----~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 78 (145)
.+++|++|++++|.+....+..+ ..++ +|++|++++|.+... .+... ...+++|++|+++++. +.....
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~ 131 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQ 131 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCc-CchHHHH
Confidence 44556666666655443222222 1233 466666655544321 11111 2345566666665543 211000
Q ss_pred ----c-CCCCCCCceeeeccCcccC----CCCccCCCCCCCCEEEecCCc
Q 045889 79 ----G-AGAMPKLESLIANPCAYLR----KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 79 ----~-~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~ 119 (145)
. ....++|+.|.+.+|.... .++..+..+++|++|+++++.
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 0 1123356666665553222 123334445566666666553
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.90 E-value=4.3e-07 Score=70.55 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=20.0
Q ss_pred CCCCcEEEEecc-cCCCCCchh-ccCCCCCCEEEeecccc
Q 045889 9 PPILTDLSLSNT-ELMEDPMPM-MEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 9 l~~L~~L~L~~~-~l~~~~~~~-l~~l~~L~~L~l~~~~~ 46 (145)
+++|++|++++| .+....+.. ..++++|++|++++|.+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i 168 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV 168 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEE
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCcc
Confidence 456666666666 333221222 23566666666655543
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.79 E-value=5.5e-06 Score=64.33 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecccCCCCCch----hccCCCCCCEEEeeccccc
Q 045889 8 FPPILTDLSLSNTELMEDPMP----MMEKLPRPQVLKLKQNSYL 47 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~ 47 (145)
.+++|++|+|++|.+.+.... .+..+++|++|++++|.+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence 457777777777766544321 2345667777777666554
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=3.9e-06 Score=62.29 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=49.9
Q ss_pred CCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCC-------CccE--EE
Q 045889 8 FPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYW-------LDEW--TM 78 (145)
Q Consensus 8 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~--~~ 78 (145)
.+++|+.|.+++|.-.. +..+ .+++|+.|++..+....+....-....+|+|+.|+++...+ ...+ ..
T Consensus 170 ~~P~L~~L~L~g~~~l~--l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS--IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTCB--CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCce--eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 34566666665552001 1112 25566666665444322111000012467777777642100 1011 01
Q ss_pred cCCCCCCCceeeeccCcccCCCCcc---CCCCCCCCEEEecCCc
Q 045889 79 GAGAMPKLESLIANPCAYLRKLPKE---LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~l~~lp~~---l~~l~~L~~L~l~~~~ 119 (145)
..+.+|+|+.|.+.+|......+.. ...+++|+.|+++.+.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 2235777888877665432211111 1346778888887663
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=0.00021 Score=51.75 Aligned_cols=101 Identities=16% Similarity=0.058 Sum_probs=64.8
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCcccc-EEeccCCCCCccEEEc-CCCCCCC
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELK-VLNLKSMYWLDEWTMG-AGAMPKL 86 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~-~~~~~~L 86 (145)
+++|+.+++.+|.++..+...+..+++|+.+++..| . ..+......++++|+ .+.+.+ .+..+... ...+++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i--~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L--KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c--ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 678888888888777666667888888888888655 2 122211134566777 777765 34444322 2245678
Q ss_pred ceeeeccCcccCCCCc-cCCCCCCCCEEEe
Q 045889 87 ESLIANPCAYLRKLPK-ELWCVKSLCKLDL 115 (145)
Q Consensus 87 ~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l 115 (145)
+.+.+..+ .+..++. .+.++++|+.++.
T Consensus 300 ~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 88877543 3555655 5677888887763
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=9.2e-06 Score=57.88 Aligned_cols=30 Identities=23% Similarity=0.157 Sum_probs=15.0
Q ss_pred CCceeeeccCcccCCCCc-------cCCCCCCCCEEE
Q 045889 85 KLESLIANPCAYLRKLPK-------ELWCVKSLCKLD 114 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~-------~l~~l~~L~~L~ 114 (145)
+|+.|.+.+|+..+.+|. .+..+++|+.|+
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 555555555554443432 134455666555
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.47 E-value=4.6e-07 Score=67.44 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=57.5
Q ss_pred CCCcEEEEecccCCCCCchhcc-CCCCCCEEEeecccccCcEEEE-e-cC-CCCccccEEeccCCCCCcc-----EEEcC
Q 045889 10 PILTDLSLSNTELMEDPMPMME-KLPRPQVLKLKQNSYLGRKLAC-V-GS-GGFPELKVLNLKSMYWLDE-----WTMGA 80 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~-~-~~-~~~~~L~~L~l~~~~~~~~-----~~~~~ 80 (145)
.+|++|+|++|.+.......+. .+++|++|++++|.+.+..... . .. ...++|+.|++++|. +.. +....
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHH
Confidence 4666666666655433222222 3455666666665543321100 0 00 124667778877664 221 11111
Q ss_pred CCCCCCceeeeccCccc----CCCCccCCCCCCCCEEEecCCc
Q 045889 81 GAMPKLESLIANPCAYL----RKLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 81 ~~~~~L~~L~l~~~~~l----~~lp~~l~~l~~L~~L~l~~~~ 119 (145)
...++|+.|.+++|... ..+...+.+.++|+.|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 34677888888776532 1234455666788888888874
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.37 E-value=2.9e-06 Score=63.12 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=66.9
Q ss_pred CCCCcEEEEecccCCCCCchhc-----cCCCCCCEEEeecccccCcEEE-Ee-cCCCCccccEEeccCCCCCcc-----E
Q 045889 9 PPILTDLSLSNTELMEDPMPMM-----EKLPRPQVLKLKQNSYLGRKLA-CV-GSGGFPELKVLNLKSMYWLDE-----W 76 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~-----~ 76 (145)
+.+|++|+|++|.++......+ ...++|++|++++|.+.+.... +. .....++|++|+++++. +.. +
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L 203 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL 203 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH
Confidence 3568888998888765443333 2467889999987766432110 00 01246788888888764 321 1
Q ss_pred EEcCCCCCCCceeeeccCcccC----CCCccCCCCCCCCEEEecCCc
Q 045889 77 TMGAGAMPKLESLIANPCAYLR----KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~ 119 (145)
.......++|+.|.+.+|.... .+...+...++|++|++++|+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 1122345688888888775321 233344556788888888875
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=2.7e-05 Score=52.11 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=46.1
Q ss_pred CCCCCCCcEEEEeccc-CCCCCchhccCC----CCCCEEEeeccc-ccCcEEEEecCCCCccccEEeccCCCCCc
Q 045889 6 YQFPPILTDLSLSNTE-LMEDPMPMMEKL----PRPQVLKLKQNS-YLGRKLACVGSGGFPELKVLNLKSMYWLD 74 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~-l~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 74 (145)
+..+++|++|+|++|. ++...+..++.+ ++|++|++++|. .++..+.. ...+++|+.|++++|..+.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH--GGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH--HhcCCCCCEEECCCCCCCC
Confidence 4678999999999994 665556667765 479999998775 33322211 2347788888887776543
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.91 E-value=1.8e-05 Score=53.14 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=72.1
Q ss_pred CCCCCCCcEEEEecc-cCCCCCc----hhccCCCCCCEEEeecccccCcEEE-E-ecCCCCccccEEeccCCCCCcc---
Q 045889 6 YQFPPILTDLSLSNT-ELMEDPM----PMMEKLPRPQVLKLKQNSYLGRKLA-C-VGSGGFPELKVLNLKSMYWLDE--- 75 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~-~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~--- 75 (145)
+...++|++|+|++| .+..... ..+...++|++|+|++|.+.++... + ......++|++|+++++.-...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345688999999998 8764332 3456778999999988876542111 0 0011246899999997752211
Q ss_pred -EEEcCCCCCCCceeee--ccCcccC----CCCccCCCCCCCCEEEecCCc
Q 045889 76 -WTMGAGAMPKLESLIA--NPCAYLR----KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 76 -~~~~~~~~~~L~~L~l--~~~~~l~----~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+.......+.|+.|.+ .+|.... .+...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1222334568999999 5554221 133345556889999999886
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.84 E-value=0.0038 Score=45.06 Aligned_cols=36 Identities=8% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS 45 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 45 (145)
+++|+.|+|.+ .++..+...+..+++|+.+++..|.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC
Confidence 66667666666 4544444456666777777765553
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.77 E-value=0.00067 Score=48.25 Aligned_cols=11 Identities=27% Similarity=0.027 Sum_probs=6.4
Q ss_pred CCCEEEecCCc
Q 045889 109 SLCKLDLHWPQ 119 (145)
Q Consensus 109 ~L~~L~l~~~~ 119 (145)
+|++|++++++
T Consensus 221 ~L~~L~L~~Np 231 (267)
T 3rw6_A 221 KLEELWLDGNS 231 (267)
T ss_dssp CCSEEECTTST
T ss_pred CcceEEccCCc
Confidence 55666665554
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0026 Score=40.17 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=23.9
Q ss_pred CCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccc
Q 045889 9 PPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSY 46 (145)
Q Consensus 9 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 46 (145)
+++|++|+|++|.++..+...+..+++|+.|+|.+|.+
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34566666666666665555566666666666666654
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.92 E-value=0.086 Score=39.34 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=17.4
Q ss_pred CCCcEEEEecccCCCCCchhccCCCCCCEEEeeccc
Q 045889 10 PILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNS 45 (145)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 45 (145)
.+|+.+++.++ +.......+..+++|+.+.+.++.
T Consensus 248 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 248 SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSC
T ss_pred CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCcc
Confidence 45566666332 332233445556666666665443
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.86 E-value=0.037 Score=41.34 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=16.2
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEe
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKL 41 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l 41 (145)
+..+.+|+.+++..|.++..+...+. .++|+.+.+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 44455566666655544433222222 244555544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.62 E-value=0.00054 Score=45.77 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=56.4
Q ss_pred CCCCCCCcEEEEecccCCCCCc----hhccCCCCCCEEEeecccccCcEEE--EecCCCCccccEEec--cCCCCCcc--
Q 045889 6 YQFPPILTDLSLSNTELMEDPM----PMMEKLPRPQVLKLKQNSYLGRKLA--CVGSGGFPELKVLNL--KSMYWLDE-- 75 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l--~~~~~~~~-- 75 (145)
+...++|++|+|++|.+..... ..+...++|++|+|++|.+.+.... .......++|+.|++ .++. ++.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g 139 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNV 139 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHH
Confidence 3456899999999998865433 2345568999999998877553211 000223568999999 5553 221
Q ss_pred ---EEEcCCCCCCCceeeeccCc
Q 045889 76 ---WTMGAGAMPKLESLIANPCA 95 (145)
Q Consensus 76 ---~~~~~~~~~~L~~L~l~~~~ 95 (145)
+.......+.|+.|.+..|.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCcCEEeccCCC
Confidence 11111234789999997764
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.54 E-value=2.1 Score=31.31 Aligned_cols=109 Identities=12% Similarity=0.166 Sum_probs=65.1
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 84 (145)
+..+..|+.+++.++. .......+.++++|+.+.+. +... .+......++.+|+.+.+.. .+..+.... ..+.
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~--~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRIT--ELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE 334 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCC--EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-Cccc--ccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence 4566777877775542 22222456677888888884 2211 11111133467888888863 244432211 2346
Q ss_pred CCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCcHHH
Q 045889 85 KLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQTEL 122 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 122 (145)
+|+.+.+.. .+..+.. .+.++++|+.+++.++...+
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeeh
Confidence 789988853 2556655 57889999999999876443
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.45 E-value=1.2 Score=27.55 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=23.8
Q ss_pred CCCceeeeccCcccCCCCcc-CCCCCCCCEEEecCCc
Q 045889 84 PKLESLIANPCAYLRKLPKE-LWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 84 ~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 119 (145)
++++.|.+.++ .+..+|.+ +..+++|+.|+|.++|
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 35777777654 35566664 4667788888888775
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=83.87 E-value=2.4 Score=31.08 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=61.9
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 84 (145)
+..+..++.+......+.. ..+....+|+.+.+..+ .. .+.......+.+|+.+.+.+ .+..+.... ..+.
T Consensus 272 F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCT 343 (394)
T ss_dssp TTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCT
T ss_pred cccccccceeccCceeecc---ccccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC--cccEEhHHhccCCC
Confidence 4566777777776554322 34667888999988533 11 11111123457888888853 244432211 2346
Q ss_pred CCceeeeccCcccCCCCc-cCCCCCCCCEEEecCCc
Q 045889 85 KLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 119 (145)
+|+.+.+... +..+.. .+.++.+|+.+++...-
T Consensus 344 ~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 344 SLSNINFPLS--LRKIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp TCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGG
T ss_pred CCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCC
Confidence 7888888543 445554 56788999999986653
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.35 E-value=3.2 Score=30.02 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=25.5
Q ss_pred CccccEEeccCCCCCccEEEcC-CCCCCCceeeeccCcccCCCCc-cCCCCCCCCEEEec
Q 045889 59 FPELKVLNLKSMYWLDEWTMGA-GAMPKLESLIANPCAYLRKLPK-ELWCVKSLCKLDLH 116 (145)
Q Consensus 59 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~ 116 (145)
+.+|+.+.+.+. .+..+.... ..+.+|+.+.+.. .++.|.. .+.++.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 456666666432 122222111 1234566666642 2334433 34556666666654
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.12 E-value=5.6 Score=29.03 Aligned_cols=103 Identities=13% Similarity=0.023 Sum_probs=58.2
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 84 (145)
+..+..|+.+.+..+.. ......+.....++.+......... .. ...+.+|+.+.+.+ .+..+.... ..+.
T Consensus 249 f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~----~~-F~~~~~L~~i~l~~--~i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE----KT-FYGCSSLTEVKLLD--SVKFIGEEAFESCT 320 (394)
T ss_dssp TTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT----TT-TTTCTTCCEEEECT--TCCEECTTTTTTCT
T ss_pred ccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc----cc-cccccccccccccc--ccceechhhhcCCC
Confidence 45667888888866532 2222456677778877764332111 01 23467788887753 244332111 2345
Q ss_pred CCceeeeccCcccCCCCc-cCCCCCCCCEEEecCC
Q 045889 85 KLESLIANPCAYLRKLPK-ELWCVKSLCKLDLHWP 118 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 118 (145)
+|+.+.+.. .+..+.. .+.++.+|+.+.+..+
T Consensus 321 ~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 321 SLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred CCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc
Confidence 788877753 2445544 4677788888887543
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.45 E-value=7.6 Score=28.32 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=56.2
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEc-CCCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMG-AGAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 84 (145)
+..+..|+.+.+.. .+...+...+..+++|+.+.+..+ . ..+......++.+|+.+.+.. .+..+... ...+.
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v--~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I--TQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCT 357 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCT
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c--cEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCC
Confidence 55678999998864 344444456788999999999533 1 111111133567899998853 23333211 12457
Q ss_pred CCceeeeccCcccCCCCccCCCCCCCCEEEecC
Q 045889 85 KLESLIANPCAYLRKLPKELWCVKSLCKLDLHW 117 (145)
Q Consensus 85 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~ 117 (145)
+|+.+.+.+.... + ..+....+|+.+.+..
T Consensus 358 ~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEESSCHHH--H-HTCBCCCCC-------
T ss_pred CCCEEEECCceee--h-hhhhccCCCCEEEeCC
Confidence 8888888654321 1 2344556777776654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=60.08 E-value=11 Score=27.05 Aligned_cols=82 Identities=12% Similarity=0.017 Sum_probs=45.1
Q ss_pred CCCCCCCcEEEEecccCCCCCchhccCCCCCCEEEeecccccCcEEEEecCCCCccccEEeccCCCCCccEEEcC-CCCC
Q 045889 6 YQFPPILTDLSLSNTELMEDPMPMMEKLPRPQVLKLKQNSYLGRKLACVGSGGFPELKVLNLKSMYWLDEWTMGA-GAMP 84 (145)
Q Consensus 6 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 84 (145)
+..+.+|+.+.+..+ +...+...+..+++|+.+.+..+... .+.......+.+|+.+.+.. .+..+.... ..+.
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 333 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCK 333 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC--EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccc--eehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCC
Confidence 456778888888654 33333345778889999988644321 11111123457788888853 233332111 1234
Q ss_pred CCceeeec
Q 045889 85 KLESLIAN 92 (145)
Q Consensus 85 ~L~~L~l~ 92 (145)
+|+.+.+.
T Consensus 334 ~L~~i~ip 341 (379)
T 4h09_A 334 ALSTISYP 341 (379)
T ss_dssp TCCCCCCC
T ss_pred CCCEEEEC
Confidence 56666553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=47.12 E-value=2.4 Score=28.48 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=63.1
Q ss_pred CCCCCcEEEEecc-cCCCCCc----hhccCCCCCCEEEeecccccCcEEEEe--cCCCCccccEEeccCCCCCcc-----
Q 045889 8 FPPILTDLSLSNT-ELMEDPM----PMMEKLPRPQVLKLKQNSYLGRKLACV--GSGGFPELKVLNLKSMYWLDE----- 75 (145)
Q Consensus 8 ~l~~L~~L~L~~~-~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~----- 75 (145)
.-+.|+.|+|+++ .+..... ..+..=+.|+.|+|++|.+.+.....- ....=..|+.|++.++. ++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence 4478999999885 6643222 345556889999998887654210000 00012579999998764 221
Q ss_pred EEEcCCCCCCCceeeeccCc--ccC-----CCCccCCCCCCCCEEEecCCc
Q 045889 76 WTMGAGAMPKLESLIANPCA--YLR-----KLPKELWCVKSLCKLDLHWPQ 119 (145)
Q Consensus 76 ~~~~~~~~~~L~~L~l~~~~--~l~-----~lp~~l~~l~~L~~L~l~~~~ 119 (145)
+.-....-..|+.|.+.++. ..+ ++-..+..=++|++|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 11111223468999887542 222 122223344689999998765
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.60 E-value=1.1e+02 Score=17.66 Aligned_cols=15 Identities=0% Similarity=0.047 Sum_probs=9.9
Q ss_pred hhccCCCCCCEEEee
Q 045889 28 PMMEKLPRPQVLKLK 42 (145)
Q Consensus 28 ~~l~~l~~L~~L~l~ 42 (145)
..+..+++|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ 28 (100)
T ss_dssp CTTTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC
Confidence 345567777777774
Done!