BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045892
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 209 bits (533), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 114/131 (87%), Gaps = 2/131 (1%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKID--NQQVVVEKLGSPGDSYDDFTTSLPADECRY 58
MAVHDDCKL+F+ELKAKR +RFI++KI+ +QVVVEK+G P +Y++F LPADECRY
Sbjct: 8 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67
Query: 59 AVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPS 118
A+YDFDF+T ENCQKSKIFFIAW PD +KVRSKM+YASSKDRFKRELDGIQ ELQATDP+
Sbjct: 68 AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127
Query: 119 EMSLDIIKERA 129
EM LD+ + RA
Sbjct: 128 EMDLDVFRSRA 138
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 93/131 (70%), Gaps = 3/131 (2%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKID--NQQVVVEKLGSPGDSYDDFTTSLPADECRY 58
+AV DDC KF ELK +R++ FK++ N +VVVE +G P +Y+DF + LP +CRY
Sbjct: 3 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62
Query: 59 AVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPS 118
A++D++F + Q++KI FI W+PD + ++SKM+Y S+KD K++L GIQ E+QATD +
Sbjct: 63 AIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 121
Query: 119 EMSLDIIKERA 129
E+S D + ERA
Sbjct: 122 EISEDAVSERA 132
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 93/131 (70%), Gaps = 3/131 (2%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKID--NQQVVVEKLGSPGDSYDDFTTSLPADECRY 58
+AV DDC KF ELK +R++ FK++ N +VVVE +G P +Y+DF + LP +CRY
Sbjct: 3 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62
Query: 59 AVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPS 118
A++D++F + Q++KI FI W+PD + ++SKM+Y S+KD K++L GIQ E+QATD +
Sbjct: 63 AIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 121
Query: 119 EMSLDIIKERA 129
E+S D + ERA
Sbjct: 122 EISEDAVSERA 132
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDNQQV-VVEKLGSPGDSYDDFTTSLPADECRYA 59
+AV D+ F +LK + Y+FI+F +++ + +V K S SYD F LP ++C YA
Sbjct: 6 VAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYA 65
Query: 60 VYDFDF-ITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPS 118
+YDF++ I ++SKI F WSPD + VRSKMVYASSKD +R L+G+ ++Q TD S
Sbjct: 66 IYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFS 125
Query: 119 EMSLDIIKER 128
E+S D + ER
Sbjct: 126 EVSYDSVLER 135
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 4/131 (3%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDNQ--QVVVEKLGSPGDSYDDFTTSLPADECRY 58
+ V +C F ELK ++ R+++FK+++ ++VVEK + D +D F LP +CRY
Sbjct: 6 VKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRY 64
Query: 59 AVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPS 118
A+YDF+F E ++KI FI+WSPD + ++SKMVY+SSKD +R GI ++QATD S
Sbjct: 65 AIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFS 123
Query: 119 EMSLDIIKERA 129
E++ + + E+
Sbjct: 124 EVAYETVLEKV 134
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 11/107 (10%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAV 60
M V ++C +F ELK ++ ++I+FKI+N ++VVEK G + D+F +LPA++CR+ V
Sbjct: 26 MGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGK--GNADEFRGALPANDCRFGV 83
Query: 61 YDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDG 107
YD +KI F+ W PD + V+ +M YASSKD ++LDG
Sbjct: 84 YDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDG 121
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 13 ELKAKRNYRFIIFKIDNQQVVVEK-----LGSPG----DSYDDFTTSLPADECRYAVYDF 63
E+K ++ D + ++VE+ +G G D + F LP +CRYA+YD
Sbjct: 37 EIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDA 96
Query: 64 DFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLD 123
F T E+ +K ++ F W+P+ + ++SKM+YASSKD K++ GI+ E QA P +++
Sbjct: 97 SFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRA 155
Query: 124 IIKER 128
I E+
Sbjct: 156 CIAEK 160
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 15/126 (11%)
Query: 13 ELKAKRNYRFIIFKIDNQQVVVEK-----LGSPGDSYDD----FTTSLPADECRYAVYDF 63
E+K ++ D +Q++VE+ +G GD+ +D F LP ++CRYA+YD
Sbjct: 28 EIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYALYDA 87
Query: 64 DFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLD 123
+ T E+ +K + FI W+P+ + ++SKM+YASSKD K++ GI+ E Q LD
Sbjct: 88 TYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLD 141
Query: 124 IIKERA 129
IK+R+
Sbjct: 142 DIKDRS 147
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 10/112 (8%)
Query: 13 ELKAKRNYRFIIFKIDNQQVVVEK-----LGSPGDSYDD----FTTSLPADECRYAVYDF 63
E+K ++ D + +++E+ +G G + DD F LP +CRYA+YD
Sbjct: 28 EVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDA 87
Query: 64 DFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQAT 115
+ T E+ +K + FI W+P+ + ++SKM+YASSKD K++L GI+ ELQA
Sbjct: 88 TYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQAN 138
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 3 VHDDCKLKFMELKAKRNYRFIIFKIDN-QQVVVE------KLGSPGDSYDDFTTSLPADE 55
V D+C +F LK K ++II+KI+N +++VV+ +L S + +L E
Sbjct: 12 VSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTE 71
Query: 56 CRYAVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQAT 115
CRY + D T E + +I+FI WSP SK + KM+YA+SK+ R+++GI L+ T
Sbjct: 72 CRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEIT 131
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAV 60
++V D+C +L+ K++ I+ +D + + V+ +G G ++D F ++ + YA
Sbjct: 14 VSVADECVTALNDLRHKKSRYVIMHIVDQKSIAVKTIGERGANFDQFIEAIDKNVPCYAA 73
Query: 61 YDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEM 120
+DF++ T++ + K+ I+W+PD R+KM+Y+SS+D G Q +QA D S +
Sbjct: 74 FDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQANDASGL 131
Query: 121 SLDIIKER 128
+ I +
Sbjct: 132 DFEEISRK 139
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 20 YRFIIFKIDNQQVVVEKLGSPGDS----YDDFTTSLPADECRYAVYDFDFITHENCQKSK 75
YR + I+N+Q+VV P DS YD F LP E + Y + +N Q +
Sbjct: 25 YRLLKISIENEQLVVGSCSPPSDSWEQDYDSFV--LPLLEDKQPCYVLFRLDSQNAQGYE 82
Query: 76 IFFIAWSPDPSKVRSKMVYASSKDRFKRELDG--IQFELQATDPSEMSL 122
FIAWSPD S VR KM+YA+++ K+E G I+ E+ T ++SL
Sbjct: 83 WIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSL 131
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 1 MAVHDDCKLKFMELKAKRN-YRFIIFKIDNQQVVVEKLGSPGDSYD-DFTTS-LPADECR 57
M +H +LK KA+ R I I+++Q+V+ P +D D+ + LP + +
Sbjct: 2 MGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQ 61
Query: 58 YAVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDG--IQFELQAT 115
Y + +N Q + F+AWSPD S VR KM+YA+++ K+E G I+ EL T
Sbjct: 62 QPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGT 121
Query: 116 DPSEMS 121
++S
Sbjct: 122 VKDDLS 127
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 3 VHDDCKLKFMELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPAD---ECRYA 59
V+D+C +F +K ++ +IIF I N ++++ G+ + + S+ + +C Y
Sbjct: 9 VNDNCVTEFNNMKIRKTCGWIIFVIQNCEIIIHSKGAS-TTLTELVQSIDKNNEIQCAYV 67
Query: 60 VYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSE 119
V+D SKI F ++ + S R +M YASSK ++++G+ + ++
Sbjct: 68 VFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQ 118
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 5 DDCKLKFMELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFD 64
DD ++K K Y + D +++ V ++G +Y D ++ Y +DF+
Sbjct: 17 DDLRMK------KSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFE 70
Query: 65 FITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEM 120
+ ++ K+ I W PD ++ R KM+Y++S+D +G +QA D S +
Sbjct: 71 Y-NDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGL 124
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 3 VHDDCKLKFMELKAKRN-YRFIIFKIDNQ-QVVVEKLGSPGDSYDDFTTSLPAD---ECR 57
V+D+C +F +K ++ +IIF I N ++++ G+ + + S+ + +C
Sbjct: 9 VNDNCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIHSKGAS-TTLTELVQSIDKNNEIQCA 67
Query: 58 YAVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDP 117
Y V+D SKI F ++ + S R +M YASSK ++++G+ +
Sbjct: 68 YVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIES 118
Query: 118 SE 119
++
Sbjct: 119 AQ 120
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 9 LKFMELKAKRNYRFIIFKID-NQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFIT 67
L+ + + N II K+D ++Q+VV + S ++ LP + R+ VY + ++
Sbjct: 24 LRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRFVVYSYKYVH 83
Query: 68 HENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKR--ELDGIQFELQATD 116
+ + FI SP K +M+YA SK+R + EL + FE++ TD
Sbjct: 84 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV-FEIRTTD 133
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 9 LKFMELKAKRNYRFIIFKID-NQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFIT 67
L+ + + N II K+D ++Q+VV + S ++ LP + R+ VY + ++
Sbjct: 30 LRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRFVVYSYKYVH 89
Query: 68 HENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKR--ELDGIQFELQATD 116
+ + FI SP K +M+YA SK+R + EL + FE++ TD
Sbjct: 90 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV-FEIRTTD 139
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 18 RNYRF--------IIFKID-NQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITH 68
R +RF II K+D ++Q+VV + S ++ LP + R+ VY + ++
Sbjct: 15 RKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKMELPERQPRFVVYSYKYVHD 74
Query: 69 ENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKR--ELDGIQFELQATD 116
+ + FI SP K +M+YA SK+R + EL + FE++ TD
Sbjct: 75 DGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV-FEIRTTD 123
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 8 KLKFMELKAKRNYRFIIFKID-NQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFI 66
KL+ + + + II KID ++++VV G S D+ LP + R+ VY + +
Sbjct: 23 KLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQ 82
Query: 67 THENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKR--ELDGIQFELQATD 116
+ + FI SP K +M+YA SK++ + EL + FE++ T+
Sbjct: 83 HDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV-FEIRNTE 133
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAV 60
M + + + +LK K +I K+D ++ +E + + + +P D RY
Sbjct: 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHF 60
Query: 61 YDFDFITHENCQKSKIFFIAWSPD-PSKVRSKMVYASSKDRFKRELDGIQ 109
+ + THE + FI P ++ +M+Y+S K R LD ++
Sbjct: 61 FLYKH-THEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRL---LDSVE 106
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 49 TSLPADECRYAVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGI 108
T++PADE F IT +S I F + ++ K+++A++KD F R L+G+
Sbjct: 120 TTMPADE-------FPEITP---AESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGV 169
Query: 109 QFELQ 113
+EL
Sbjct: 170 FWELH 174
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 12 MELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENC 71
+E +K+ ++ +ID + + + D +P D RY + + +HE
Sbjct: 16 LEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARYHFFLYKH-SHEGD 74
Query: 72 QKSKIFFIAWSPDPS-KVRSKMVYASSK 98
+ FI P + +R +M+Y+S K
Sbjct: 75 YLESVVFIYSMPGYTCSIRERMLYSSCK 102
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 12 MELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENC 71
+E +K+ ++ +ID + + + D +P D RY + + +HE
Sbjct: 32 LEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARYHFFLYKH-SHEGD 90
Query: 72 QKSKIFFIAWSPDPS-KVRSKMVYASSK 98
+ FI P + +R +M+Y+S K
Sbjct: 91 YLESVVFIYSMPGYTCSIRERMLYSSCK 118
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 12 MELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENC 71
+E +K+ ++ +ID + + + D +P D RY + + +HE
Sbjct: 37 LEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARYHFFLYKH-SHEGD 95
Query: 72 QKSKIFFIAWSPDPS-KVRSKMVYASSK 98
+ FI P + +R +M+Y+S K
Sbjct: 96 YLESVVFIYSMPGYTCSIRERMLYSSCK 123
>pdb|3B4N|A Chain A, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B4N|B Chain B, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B8Y|A Chain A, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
pdb|3B8Y|B Chain B, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
Length = 344
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 72 QKSKIFFIAWSPDPSKVRSKMVY 94
QKS + ++ WS D SKV + VY
Sbjct: 28 QKSDVNYLGWSTDESKVARQEVY 50
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 31 QVVVEKLGSPGDSYDDFTTSLPADECRYAV 60
++++EK+G P D+YD T D RYA+
Sbjct: 265 ELILEKMGQPKDAYDHVTDRAGHD-LRYAI 293
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 31 QVVVEKLGSPGDSYDDFTTSLPADE-CRYAVYDFDFITHENCQKSKIFFIAWSPDPSKVR 89
VV+EK P SLP DE + + DF I+ E Q + IAW + + V
Sbjct: 327 NVVIEKGIIPP--------SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVI 378
Query: 90 SK 91
K
Sbjct: 379 QK 380
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 31 QVVVEKLGSPGDSYDDFTTSLPADE-CRYAVYDFDFITHENCQKSKIFFIAWSPDPSKVR 89
VV+EK P SLP DE + + DF I+ E Q + IAW + + V
Sbjct: 327 NVVIEKGIIPP--------SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVI 378
Query: 90 SK 91
K
Sbjct: 379 QK 380
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 31 QVVVEKLGSPGDSYDDFTTSLPADE-CRYAVYDFDFITHENCQKSKIFFIAWSPDPSKVR 89
VV+EK P SLP DE + + DF I+ E Q + IAW + + V
Sbjct: 325 NVVIEKGIIPP--------SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVI 376
Query: 90 SK 91
K
Sbjct: 377 QK 378
>pdb|3G68|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(cd3275) From Clostridium Difficile 630 At 1.80 A
Resolution
pdb|3G68|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(cd3275) From Clostridium Difficile 630 At 1.80 A
Resolution
Length = 352
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 11 FMELKAKRNYRFII----FKIDNQQVVVEKLGSPGDSYDDFTTSLPADE----------C 56
+++ + Y F I FK DN+ +V + G SY + A++ C
Sbjct: 59 LLDIDVVKXYPFXITEDTFKFDNENTLVVGVSQGGSSYSTYNAXKLAEDKGCKIASXAGC 118
Query: 57 RYAVYD--FDFITHENCQKSK 75
+ A+ D D+I NC + K
Sbjct: 119 KNALIDEISDYILTVNCGEEK 139
>pdb|2X06|A Chain A, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|B Chain B, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|C Chain C, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|D Chain D, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|E Chain E, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|F Chain F, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|G Chain G, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|H Chain H, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
Length = 344
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 68 HENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSE 119
E C K +F IA +P+ + K+ FKR++D + E++ ++P+E
Sbjct: 255 EERCTKGDLF-IAINPE---------FFXGKEEFKRKVDELLDEIKNSEPAE 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,816,215
Number of Sequences: 62578
Number of extensions: 143565
Number of successful extensions: 255
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 33
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)