Query 045892
Match_columns 130
No_of_seqs 100 out of 1034
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 3.7E-42 8.1E-47 238.2 15.5 129 1-129 10-140 (141)
2 cd00013 ADF Actin depolymerisa 100.0 3E-38 6.5E-43 215.7 14.8 128 1-129 3-132 (132)
3 PF00241 Cofilin_ADF: Cofilin/ 100.0 3.3E-38 7.1E-43 214.4 13.6 124 5-129 1-126 (127)
4 smart00102 ADF Actin depolymer 100.0 6.2E-37 1.4E-41 208.5 14.9 125 5-130 1-127 (127)
5 KOG1735 Actin depolymerizing f 100.0 8.8E-38 1.9E-42 214.1 10.5 129 1-129 5-140 (146)
6 PTZ00152 cofilin/actin-depolym 100.0 6.1E-34 1.3E-38 192.3 8.0 110 1-120 5-118 (122)
7 KOG1736 Glia maturation factor 99.9 4.3E-25 9.3E-30 146.6 11.9 128 2-130 9-141 (143)
8 KOG1747 Protein tyrosine kinas 99.9 3.7E-25 8E-30 166.4 9.9 121 1-128 7-134 (342)
9 KOG1747 Protein tyrosine kinas 99.9 2.5E-23 5.5E-28 156.6 11.7 127 1-130 177-311 (342)
10 KOG3655 Drebrins and related a 99.8 5.7E-19 1.2E-23 139.6 11.8 122 5-129 11-133 (484)
11 KOG2313 Stress-induced protein 49.2 27 0.00058 22.7 3.1 31 85-119 66-99 (100)
12 PF11341 DUF3143: Protein of u 46.6 21 0.00045 21.3 2.2 30 76-105 30-60 (63)
13 COG2209 NqrE Na+-transporting 34.1 13 0.00028 26.5 -0.1 17 86-102 158-174 (198)
14 PF11663 Toxin_YhaV: Toxin wit 33.9 57 0.0012 22.6 3.0 18 73-90 90-107 (140)
15 KOG0444 Cytoskeletal regulator 33.8 90 0.0019 27.8 4.7 49 55-106 527-575 (1255)
16 TIGR03853 matur_matur probable 32.4 77 0.0017 19.7 3.2 32 97-129 19-54 (77)
17 COG4075 Uncharacterized conser 31.9 92 0.002 20.3 3.6 32 3-34 74-107 (110)
18 PF12663 DUF3788: Protein of u 31.2 70 0.0015 21.7 3.2 28 2-29 91-118 (133)
19 PRK08053 sulfur carrier protei 27.7 1.2E+02 0.0026 17.6 3.4 32 24-59 2-33 (66)
20 COG4892 Predicted heme/steroid 26.7 69 0.0015 19.6 2.2 21 43-63 5-25 (81)
21 PF13645 YkuD_2: L,D-transpept 24.8 1.2E+02 0.0026 21.8 3.6 47 51-105 44-92 (176)
22 PF05292 MCD: Malonyl-CoA deca 24.6 57 0.0012 26.1 2.0 35 41-81 118-153 (354)
23 PF10678 DUF2492: Protein of u 23.6 1.9E+02 0.0042 17.9 3.9 32 97-129 21-56 (78)
24 PF02768 DNA_pol3_beta_3: DNA 22.6 64 0.0014 20.9 1.7 33 5-37 17-51 (121)
25 PF10747 DUF2522: Protein of u 21.9 1.4E+02 0.0031 20.7 3.3 36 28-65 93-129 (142)
26 PF03306 AAL_decarboxy: Alpha- 21.3 3.5E+02 0.0076 20.0 6.6 68 6-85 91-160 (220)
27 PF14234 DUF4336: Domain of un 20.5 1.2E+02 0.0027 23.5 3.1 26 1-26 38-64 (285)
28 PF14384 DUF4415: Domain of un 20.1 61 0.0013 18.9 1.1 15 1-15 33-47 (62)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=3.7e-42 Score=238.18 Aligned_cols=129 Identities=61% Similarity=1.149 Sum_probs=121.3
Q ss_pred CccCHHHHHHHHHhhcCCCceEEEEEEeC--cEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceEEE
Q 045892 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDN--QQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKIFF 78 (130)
Q Consensus 1 i~vs~e~~~a~~~~~~~~~~~~vi~~i~~--~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~vf 78 (130)
|+++++|.++|++|+.++..|||+|+|++ ++|+|++.+..+.+|++|++.||+++|||++|++++.+.+|+.+++++|
T Consensus 10 i~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvF 89 (141)
T PLN03216 10 MWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFF 89 (141)
T ss_pred CeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEE
Confidence 67999999999999988778999999987 5789988765567899999999999999999999998888999999999
Q ss_pred EEEcCCCCCchhhhhhhhhHHHHHhHcCCeeEEEEECCCCCCCHHHHHhhh
Q 045892 79 IAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIIKERA 129 (130)
Q Consensus 79 I~w~P~~a~v~~KMlyas~k~~l~~~l~g~~~~i~~~~~~dl~~~~~~~~~ 129 (130)
|+|||++|++|.||+|||+|.+|++.|+|++++|||+|.+||+++.+.+++
T Consensus 90 I~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~ 140 (141)
T PLN03216 90 IAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA 140 (141)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987
No 2
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=3e-38 Score=215.74 Aligned_cols=128 Identities=55% Similarity=0.949 Sum_probs=119.3
Q ss_pred CccCHHHHHHHHHhhcCCCceEEEEEEeC--cEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceEEE
Q 045892 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDN--QQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKIFF 78 (130)
Q Consensus 1 i~vs~e~~~a~~~~~~~~~~~~vi~~i~~--~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~vf 78 (130)
+++++++.++|++|+.+++++|++|+|++ ++|++++++....++++|.+.||+++|||++||+++.+. |+.+++++|
T Consensus 3 i~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~vf 81 (132)
T cd00013 3 IKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKIVF 81 (132)
T ss_pred ceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCEEE
Confidence 57899999999999987789999999998 899999887544589999999999999999999998766 778999999
Q ss_pred EEEcCCCCCchhhhhhhhhHHHHHhHcCCeeEEEEECCCCCCCHHHHHhhh
Q 045892 79 IAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIIKERA 129 (130)
Q Consensus 79 I~w~P~~a~v~~KMlyas~k~~l~~~l~g~~~~i~~~~~~dl~~~~~~~~~ 129 (130)
|+|||++||+|+||+|||++.+|++.++|+++++++++.+||+++.+.+|+
T Consensus 82 I~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 82 IYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999885
No 3
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=3.3e-38 Score=214.38 Aligned_cols=124 Identities=48% Similarity=0.879 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEeC--cEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceEEEEEEc
Q 045892 5 DDCKLKFMELKAKRNYRFIIFKIDN--QQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKIFFIAWS 82 (130)
Q Consensus 5 ~e~~~a~~~~~~~~~~~~vi~~i~~--~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~vfI~w~ 82 (130)
|||+++|++|+.+++++|++|+|++ ++|++++.|+...+|++|.+.|++++|||++|++.+.+. |+.+++++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 7899999999998789999999998 599999887667899999999999999999999998866 7789999999999
Q ss_pred CCCCCchhhhhhhhhHHHHHhHcCCeeEEEEECCCCCCCHHHHHhhh
Q 045892 83 PDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIIKERA 129 (130)
Q Consensus 83 P~~a~v~~KMlyas~k~~l~~~l~g~~~~i~~~~~~dl~~~~~~~~~ 129 (130)
|++||+|+||+|||++.+|++.++++++++++++++||+++.|.+|+
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl 126 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKL 126 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987
No 4
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=6.2e-37 Score=208.51 Aligned_cols=125 Identities=56% Similarity=0.931 Sum_probs=115.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEeC--cEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceEEEEEEc
Q 045892 5 DDCKLKFMELKAKRNYRFIIFKIDN--QQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKIFFIAWS 82 (130)
Q Consensus 5 ~e~~~a~~~~~~~~~~~~vi~~i~~--~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~vfI~w~ 82 (130)
++|.++|++|+++++.+|++|+|+. ++|+++++|..+++|++|++.|++++|||++||+++.++ ++.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 4799999999988779999999986 789998887666789999999999999999999998765 5578999999999
Q ss_pred CCCCCchhhhhhhhhHHHHHhHcCCeeEEEEECCCCCCCHHHHHhhhC
Q 045892 83 PDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIIKERAF 130 (130)
Q Consensus 83 P~~a~v~~KMlyas~k~~l~~~l~g~~~~i~~~~~~dl~~~~~~~~~~ 130 (130)
|++||+|.||+|||++.+|++.++|+++.|++++.+||+++.|.+++.
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999874
No 5
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=8.8e-38 Score=214.12 Aligned_cols=129 Identities=65% Similarity=1.090 Sum_probs=121.3
Q ss_pred CccCHHHHHHHHHhhcCCCceEEEEEEeC--cEEEEeecCCCCCChHHHhhcCC---CCCceEEEEeeeeec-CC-Cccc
Q 045892 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDN--QQVVVEKLGSPGDSYDDFTTSLP---ADECRYAVYDFDFIT-HE-NCQK 73 (130)
Q Consensus 1 i~vs~e~~~a~~~~~~~~~~~~vi~~i~~--~~i~v~~~~~~~~~~~el~~~L~---~~~p~y~ly~~~~~~-~~-~~~~ 73 (130)
|.|+++|+.+|++|+..+.+|+++|+|++ .+|++++.|+++.+|++|...|| .++|||++|++.|.+ .. ++.+
T Consensus 5 v~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g~~~~ 84 (146)
T KOG1735|consen 5 VAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESGNCKK 84 (146)
T ss_pred eEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeecccccee
Confidence 57999999999999998899999999987 68999988988999999999999 999999999999987 43 4578
Q ss_pred ceEEEEEEcCCCCCchhhhhhhhhHHHHHhHcCCeeEEEEECCCCCCCHHHHHhhh
Q 045892 74 SKIFFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIIKERA 129 (130)
Q Consensus 74 ~k~vfI~w~P~~a~v~~KMlyas~k~~l~~~l~g~~~~i~~~~~~dl~~~~~~~~~ 129 (130)
.|++||.|||++||+|+||+|||++++|+++|.|+++++||++++|+.++.++++|
T Consensus 85 ~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl 140 (146)
T KOG1735|consen 85 SKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKL 140 (146)
T ss_pred eeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999886
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=192.31 Aligned_cols=110 Identities=26% Similarity=0.610 Sum_probs=98.2
Q ss_pred CccCHHHHHHHHHhhcCCCceEEEEEEeCcEEEEeecCCCCCChHHHhhcCCCCC---ceEEEEeeeeecCCCcccceEE
Q 045892 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADE---CRYAVYDFDFITHENCQKSKIF 77 (130)
Q Consensus 1 i~vs~e~~~a~~~~~~~~~~~~vi~~i~~~~i~v~~~~~~~~~~~el~~~L~~~~---p~y~ly~~~~~~~~~~~~~k~v 77 (130)
|.++++|.++|++|+.++..|||+|+|++++|+|++.++ ..+|++|++.|++++ |||++|+++ ++++
T Consensus 5 i~v~de~~~~f~~lk~~k~~r~iifkI~~~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~---------~klv 74 (122)
T PTZ00152 5 IRVNDNCVTEFNNMKIRKTCRWIIFVIENCEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV---------NKIH 74 (122)
T ss_pred cCcCHHHHHHHHHHhcCCcceEEEEEEcCcEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC---------CCEE
Confidence 679999999999999888899999999989999988775 468999999999987 999999873 4799
Q ss_pred EEEEcCCCCCchhhhhhhhhHHHHHhHcCCeeE-EEEECCCCCC
Q 045892 78 FIAWSPDPSKVRSKMVYASSKDRFKRELDGIQF-ELQATDPSEM 120 (130)
Q Consensus 78 fI~w~P~~a~v~~KMlyas~k~~l~~~l~g~~~-~i~~~~~~dl 120 (130)
||+|||++|++|.||+|||||.+|++.+.|++. ..++++.+||
T Consensus 75 FI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 75 FFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred EEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 999999999999999999999999999999853 5566776665
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.93 E-value=4.3e-25 Score=146.60 Aligned_cols=128 Identities=19% Similarity=0.379 Sum_probs=113.2
Q ss_pred ccCHHHHHHHHHhhcC-C--CceEEEEEEeC--cEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceE
Q 045892 2 AVHDDCKLKFMELKAK-R--NYRFIIFKIDN--QQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKI 76 (130)
Q Consensus 2 ~vs~e~~~a~~~~~~~-~--~~~~vi~~i~~--~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~ 76 (130)
.|+++..+.++.++-. + +...++++|+. ..|+++..--...+.+|+.+.||+.+|||++|.+.+.++||+..+++
T Consensus 9 ~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stPL 88 (143)
T KOG1736|consen 9 KIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTPL 88 (143)
T ss_pred EeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCcccccE
Confidence 4789999999999854 2 67889999987 56777632113567889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCchhhhhhhhhHHHHHhHcCCeeEEEEECCCCCCCHHHHHhhhC
Q 045892 77 FFIAWSPDPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIIKERAF 130 (130)
Q Consensus 77 vfI~w~P~~a~v~~KMlyas~k~~l~~~l~g~~~~i~~~~~~dl~~~~~~~~~~ 130 (130)
+||+|.|.+++...+|+||+++.-+.+.. ++++.+++++-+|++.+++.++|+
T Consensus 89 ~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 89 CFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred EEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHhh
Confidence 99999999999999999999999999887 688899999999999999999874
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.92 E-value=3.7e-25 Score=166.44 Aligned_cols=121 Identities=31% Similarity=0.437 Sum_probs=101.4
Q ss_pred CccCHHHHHHHHHhhcCCCceEEEEEEeCcEEEEeecCC----CCCChHHHhhc-CCCCCceEEEEeeeeecCCCcccce
Q 045892 1 MAVHDDCKLKFMELKAKRNYRFIIFKIDNQQVVVEKLGS----PGDSYDDFTTS-LPADECRYAVYDFDFITHENCQKSK 75 (130)
Q Consensus 1 i~vs~e~~~a~~~~~~~~~~~~vi~~i~~~~i~v~~~~~----~~~~~~el~~~-L~~~~p~y~ly~~~~~~~~~~~~~k 75 (130)
|.-++++.+.|++-+.+ .+|.+.+.|+++++++..+.. +..+|+.++.. |.+.+|||+||+.+. +..+
T Consensus 7 I~A~e~l~~~l~~~~~~-k~R~ikIvI~nEql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds------~~~~ 79 (342)
T KOG1747|consen 7 IRATEALKKFLNEAKNG-KLRLIKIVIENEQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS------KNAE 79 (342)
T ss_pred cchHHHHHHHHHhcccC-ceEEEEEEEecccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC------CCcc
Confidence 34567888888888776 699999999999999876543 34567788876 567899999999973 3449
Q ss_pred EEEEEEcCCCCCchhhhhhhhhHHHHHhHcCCe--eEEEEECCCCCCCHHHHHhh
Q 045892 76 IFFIAWSPDPSKVRSKMVYASSKDRFKRELDGI--QFELQATDPSEMSLDIIKER 128 (130)
Q Consensus 76 ~vfI~w~P~~a~v~~KMlyas~k~~l~~~l~g~--~~~i~~~~~~dl~~~~~~~~ 128 (130)
|+||+|+||+||||+||||||||++|+++++|. ..+.++++++||++.++.+.
T Consensus 80 w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~ 134 (342)
T KOG1747|consen 80 WLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKS 134 (342)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHh
Confidence 999999999999999999999999999999874 45899999999999987654
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.90 E-value=2.5e-23 Score=156.56 Aligned_cols=127 Identities=21% Similarity=0.410 Sum_probs=110.8
Q ss_pred CccCHHHHHHHHHhhcCCCceEEEEEEe--CcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceEEE
Q 045892 1 MAVHDDCKLKFMELKAKRNYRFIIFKID--NQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKIFF 78 (130)
Q Consensus 1 i~vs~e~~~a~~~~~~~~~~~~vi~~i~--~~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~vf 78 (130)
.+|++++.+|+++++.++ ++||+|+|+ ++.|.+..+. ...+.++|-..+|.+.|||.+|+|.+++. |.....++|
T Consensus 177 ~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~-~~~e~sdL~s~vP~d~prY~ff~~~ht~e-GD~~es~~F 253 (342)
T KOG1747|consen 177 FPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTD-TCTEPSDLPSRVPRDGPRYHFFLFKHTHE-GDPLESIVF 253 (342)
T ss_pred ecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccC-CCCChHHhhhhcCCCCCceEEEecccccC-CCCceeEEE
Confidence 368999999999999885 999999999 4889998764 35678999999999999999999987654 445789999
Q ss_pred EEEcCC-CCCchhhhhhhhhHHHHHhHcC---C--eeEEEEECCCCCCCHHHHHhhhC
Q 045892 79 IAWSPD-PSKVRSKMVYASSKDRFKRELD---G--IQFELQATDPSEMSLDIIKERAF 130 (130)
Q Consensus 79 I~w~P~-~a~v~~KMlyas~k~~l~~~l~---g--~~~~i~~~~~~dl~~~~~~~~~~ 130 (130)
||.||. +|.||+||+|||||..|...+. | +..+|+++|.+||+++.+.+.+|
T Consensus 254 IYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 254 IYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred EEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 999999 9999999999999999987664 4 35699999999999999888765
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.80 E-value=5.7e-19 Score=139.59 Aligned_cols=122 Identities=16% Similarity=0.294 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhcCC-CceEEEEEEeCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceEEEEEEcC
Q 045892 5 DDCKLKFMELKAKR-NYRFIIFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKIFFIAWSP 83 (130)
Q Consensus 5 ~e~~~a~~~~~~~~-~~~~vi~~i~~~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~vfI~w~P 83 (130)
.+|.++|+++..++ .+.|++|+++++++.+...+...+++++|++.+......|++++.. +.++.+.|||||+||+
T Consensus 11 aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~KfvLI~W~G 87 (484)
T KOG3655|consen 11 AEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPKFVLINWIG 87 (484)
T ss_pred HHHHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEec---CcccCCcceEEEEecC
Confidence 57999999999776 7999999999977776665566788999999999999999999996 5577899999999999
Q ss_pred CCCCchhhhhhhhhHHHHHhHcCCeeEEEEECCCCCCCHHHHHhhh
Q 045892 84 DPSKVRSKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIIKERA 129 (130)
Q Consensus 84 ~~a~v~~KMlyas~k~~l~~~l~g~~~~i~~~~~~dl~~~~~~~~~ 129 (130)
+++++-+|-.+|+.+..++..|.|++++|+|++.+||+.+.|.++|
T Consensus 88 E~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~l 133 (484)
T KOG3655|consen 88 EGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKL 133 (484)
T ss_pred CccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887
No 11
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=49.19 E-value=27 Score=22.72 Aligned_cols=31 Identities=35% Similarity=0.642 Sum_probs=22.5
Q ss_pred CCCchhhhhhhhhHHHHHhHcCC--ee-EEEEECCCCC
Q 045892 85 PSKVRSKMVYASSKDRFKRELDG--IQ-FELQATDPSE 119 (130)
Q Consensus 85 ~a~v~~KMlyas~k~~l~~~l~g--~~-~~i~~~~~~d 119 (130)
+..-|.||.| ..|+.+|.+ ++ ..|.+..|++
T Consensus 66 s~v~RHRlVy----~~L~eEl~~~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVY----KALKEELAGTGVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHH----HHHHHHhhccceeEEEeeccCCCC
Confidence 4567999999 556666654 55 4888888876
No 12
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=46.65 E-value=21 Score=21.29 Aligned_cols=30 Identities=7% Similarity=0.269 Sum_probs=26.2
Q ss_pred EEEEEEcCCC-CCchhhhhhhhhHHHHHhHc
Q 045892 76 IFFIAWSPDP-SKVRSKMVYASSKDRFKREL 105 (130)
Q Consensus 76 ~vfI~w~P~~-a~v~~KMlyas~k~~l~~~l 105 (130)
=+.|.|.+.+ ..++...-|+-+|+.+.+++
T Consensus 30 ~L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 30 DLVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 3689999998 88999999999999998765
No 13
>COG2209 NqrE Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]
Probab=34.08 E-value=13 Score=26.46 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=13.4
Q ss_pred CCchhhhhhhhhHHHHH
Q 045892 86 SKVRSKMVYASSKDRFK 102 (130)
Q Consensus 86 a~v~~KMlyas~k~~l~ 102 (130)
|.+|+||.||---..++
T Consensus 158 AgirEKmkYsdvP~gL~ 174 (198)
T COG2209 158 AGIREKMKYSDVPKGLQ 174 (198)
T ss_pred HhHHHHhhcccCccccc
Confidence 58999999997665553
No 14
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.93 E-value=57 Score=22.57 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=15.1
Q ss_pred cceEEEEEEcCCCCCchh
Q 045892 73 KSKIFFIAWSPDPSKVRS 90 (130)
Q Consensus 73 ~~k~vfI~w~P~~a~v~~ 90 (130)
.+|+|++.|+-|..+.|.
T Consensus 90 ~skiIv~aWvNDe~tlR~ 107 (140)
T PF11663_consen 90 ESKIIVYAWVNDEQTLRA 107 (140)
T ss_pred ccCEEEEEEeCCCcchhh
Confidence 569999999999887663
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=33.80 E-value=90 Score=27.75 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=37.7
Q ss_pred CceEEEEeeeeecCCCcccceEEEEEEcCCCCCchhhhhhhhhHHHHHhHcC
Q 045892 55 ECRYAVYDFDFITHENCQKSKIFFIAWSPDPSKVRSKMVYASSKDRFKRELD 106 (130)
Q Consensus 55 ~p~y~ly~~~~~~~~~~~~~k~vfI~w~P~~a~v~~KMlyas~k~~l~~~l~ 106 (130)
.-||++..-... .+..-.|-..+|+++.|+.-.+|--|-+...|+..|+
T Consensus 527 aDcYiVLKT~~d---dsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 527 ADCYIVLKTTRD---DSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccEEEEEEeecc---cccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 457999877542 2235577888999999999999888888888887774
No 16
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=32.41 E-value=77 Score=19.66 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=24.6
Q ss_pred hHHHHHh----HcCCeeEEEEECCCCCCCHHHHHhhh
Q 045892 97 SKDRFKR----ELDGIQFELQATDPSEMSLDIIKERA 129 (130)
Q Consensus 97 ~k~~l~~----~l~g~~~~i~~~~~~dl~~~~~~~~~ 129 (130)
|+++|++ .+ |-...++..+.++++.+.+.+-+
T Consensus 19 t~~~L~~~i~~~F-G~~arFhTCSa~~m~a~~Li~FL 54 (77)
T TIGR03853 19 TRESLKAAIEQKF-GEDARFHTCSAEGMTADELLQFL 54 (77)
T ss_pred CHHHHHHHHHHHh-CCCceEeecccccCCHHHHHHHH
Confidence 5666654 45 66789999999999999987654
No 17
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=31.89 E-value=92 Score=20.35 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=14.2
Q ss_pred cCHHHHHHHHHhhcCC--CceEEEEEEeCcEEEE
Q 045892 3 VHDDCKLKFMELKAKR--NYRFIIFKIDNQQVVV 34 (130)
Q Consensus 3 vs~e~~~a~~~~~~~~--~~~~vi~~i~~~~i~v 34 (130)
+++++.+.+.++-..+ +.||-++.|.-+.|.|
T Consensus 74 V~Ee~vekie~~~~Ekla~eryTIi~ipI~~I~V 107 (110)
T COG4075 74 VKEEKVEKIEELLKEKLANERYTIIEIPIEKIIV 107 (110)
T ss_pred cCHHHHHHHHHHHHHHhcCCceEEEEeeeeeEEe
Confidence 3444444444443222 4455555544444433
No 18
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=31.25 E-value=70 Score=21.67 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHhhcCCCceEEEEEEeC
Q 045892 2 AVHDDCKLKFMELKAKRNYRFIIFKIDN 29 (130)
Q Consensus 2 ~vs~e~~~a~~~~~~~~~~~~vi~~i~~ 29 (130)
.+|+.+++.|.+-+..++-+|+.+.+.+
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~ 118 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRS 118 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCC
Confidence 4789999999998877778999998753
No 19
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=27.74 E-value=1.2e+02 Score=17.55 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=21.6
Q ss_pred EEEEeCcEEEEeecCCCCCChHHHhhcCCCCCceEE
Q 045892 24 IFKIDNQQVVVEKLGSPGDSYDDFTTSLPADECRYA 59 (130)
Q Consensus 24 i~~i~~~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ 59 (130)
.+.++++...+.. +.+..+|++.|.-+.++.+
T Consensus 2 ~i~vNg~~~~~~~----~~tl~~ll~~l~~~~~~va 33 (66)
T PRK08053 2 QILFNDQPMQCAA----GQTVHELLEQLNQLQPGAA 33 (66)
T ss_pred EEEECCeEEEcCC----CCCHHHHHHHcCCCCCcEE
Confidence 3567777777743 3468899998876655544
No 20
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=26.66 E-value=69 Score=19.64 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=16.9
Q ss_pred ChHHHhhcCCCCCceEEEEee
Q 045892 43 SYDDFTTSLPADECRYAVYDF 63 (130)
Q Consensus 43 ~~~el~~~L~~~~p~y~ly~~ 63 (130)
+++||.+.-..+.|.|+.|+=
T Consensus 5 TLEELs~ynG~nGpaYiA~~G 25 (81)
T COG4892 5 TLEELSKYNGENGPAYIAVNG 25 (81)
T ss_pred cHHHHHhhcCCCCCeEEEECC
Confidence 467888877889999998854
No 21
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=24.83 E-value=1.2e+02 Score=21.77 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCCCCceEEEEeeeeecCCCcccceEEEEEEcCCCCCchh--hhhhhhhHHHHHhHc
Q 045892 51 LPADECRYAVYDFDFITHENCQKSKIFFIAWSPDPSKVRS--KMVYASSKDRFKREL 105 (130)
Q Consensus 51 L~~~~p~y~ly~~~~~~~~~~~~~k~vfI~w~P~~a~v~~--KMlyas~k~~l~~~l 105 (130)
+|..++|+.++|+. ..++++-+||--+..--. ...+|....+.+..|
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~gsg~~~a~~FSN~~~S~~SSl 92 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGRGSGNLYATSFSNRPGSHQSSL 92 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeecccCCCCCccccCcCCCCCCCcCc
Confidence 67889999999996 557888888877654332 233444444444433
No 22
>PF05292 MCD: Malonyl-CoA decarboxylase (MCD); InterPro: IPR007956 This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidised. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK) [].; GO: 0050080 malonyl-CoA decarboxylase activity, 0006633 fatty acid biosynthetic process; PDB: 2YGW_B.
Probab=24.61 E-value=57 Score=26.08 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCChHHHhhcCCCC-CceEEEEeeeeecCCCcccceEEEEEE
Q 045892 41 GDSYDDFTTSLPAD-ECRYAVYDFDFITHENCQKSKIFFIAW 81 (130)
Q Consensus 41 ~~~~~el~~~L~~~-~p~y~ly~~~~~~~~~~~~~k~vfI~w 81 (130)
-.+|+||..-|.+. .-||++|+-... ..++||+.-
T Consensus 118 i~~w~DLkrRL~~~dRRcfaffHp~mP------~ePLIfveV 153 (354)
T PF05292_consen 118 IRSWDDLKRRLGPDDRRCFAFFHPAMP------DEPLIFVEV 153 (354)
T ss_dssp --SHHHHHHHCSTT-EEEEEEEETTCT------T--SEEEEE
T ss_pred ccCHHHHHHHhchhhhhhheeecCCCC------CCCeeeeHH
Confidence 45799999999876 889999977543 456677653
No 23
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=23.59 E-value=1.9e+02 Score=17.91 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=24.3
Q ss_pred hHHHH----HhHcCCeeEEEEECCCCCCCHHHHHhhh
Q 045892 97 SKDRF----KRELDGIQFELQATDPSEMSLDIIKERA 129 (130)
Q Consensus 97 ~k~~l----~~~l~g~~~~i~~~~~~dl~~~~~~~~~ 129 (130)
++++| .+.+ |....++..+.++++.+.+.+-+
T Consensus 21 t~~~L~~ai~~~F-G~~arFhTCSae~m~a~eLv~FL 56 (78)
T PF10678_consen 21 TKEELKAAIIEKF-GEDARFHTCSAEGMTADELVDFL 56 (78)
T ss_pred CHHHHHHHHHHHh-CCCceEEecCCCCCCHHHHHHHH
Confidence 55555 4455 67788999999999999987643
No 24
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=22.62 E-value=64 Score=20.86 Aligned_cols=33 Identities=3% Similarity=0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhc--CCCceEEEEEEeCcEEEEeec
Q 045892 5 DDCKLKFMELKA--KRNYRFIIFKIDNQQVVVEKL 37 (130)
Q Consensus 5 ~e~~~a~~~~~~--~~~~~~vi~~i~~~~i~v~~~ 37 (130)
.+++++++.+.. ..+.+.|.|.++++++.+...
T Consensus 17 ~~L~~al~Rv~~~~~~~~~~v~l~~~~~~l~l~~~ 51 (121)
T PF02768_consen 17 KELLDALKRVSIISSEKNNPVKLSFSDNQLTLSSQ 51 (121)
T ss_dssp HHHHHHHHHHHHHHTTTTGEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEEECCEEEEEEc
Confidence 466777777752 235678889999988887653
No 25
>PF10747 DUF2522: Protein of unknown function (DUF2522); InterPro: IPR019683 This entry represents the Sporulation inhibitor of replication (sirA) family of proteins from Bacillus sp. Induction of sporulation in rapidly growing cells inhibits replication; this is thought to be through the action of SirA protein and independent of phosphorylated Spo0A; however SirA protein synthesis is induced by Spo0A [].
Probab=21.95 E-value=1.4e+02 Score=20.66 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=24.3
Q ss_pred eCcEEEEeecCCCCCChH-HHhhcCCCCCceEEEEeeee
Q 045892 28 DNQQVVVEKLGSPGDSYD-DFTTSLPADECRYAVYDFDF 65 (130)
Q Consensus 28 ~~~~i~v~~~~~~~~~~~-el~~~L~~~~p~y~ly~~~~ 65 (130)
.+..|.+..+|+ .+.+ .|-+.|..-+|||...+++.
T Consensus 93 ~~~~i~l~~~Gs--~~aet~~FevLrk~~~~FlAvd~~~ 129 (142)
T PF10747_consen 93 KDRRIQLNCSGS--YDAETDFFEVLRKISPCFLAVDFEN 129 (142)
T ss_pred EccEEEEEecCC--HHHHHHHHHHHHhCCCceEEEecCC
Confidence 334455555443 2233 67788999999999999974
No 26
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=21.25 E-value=3.5e+02 Score=20.03 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCceEEEEEEeC--cEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeecCCCcccceEEEEEEcC
Q 045892 6 DCKLKFMELKAKRNYRFIIFKIDN--QQVVVEKLGSPGDSYDDFTTSLPADECRYAVYDFDFITHENCQKSKIFFIAWSP 83 (130)
Q Consensus 6 e~~~a~~~~~~~~~~~~vi~~i~~--~~i~v~~~~~~~~~~~el~~~L~~~~p~y~ly~~~~~~~~~~~~~k~vfI~w~P 83 (130)
++.+.+.+.-..++ .+..++|++ +.+.+.........|.-|.+.+. +++.|-+-+.. --+.=+|+|
T Consensus 91 ~l~~~l~~~~~~~N-~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~-~Q~~f~~~ni~----------GTlVGf~sP 158 (220)
T PF03306_consen 91 ELEAKLDELLPSKN-LFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAK-NQPEFTFENIE----------GTLVGFYSP 158 (220)
T ss_dssp HHHHHHHHHSS-TT-S-EEEEEEEEEEEEEEE------SS---THHHHT-T--EEEEEEEE----------EEEEEEEE-
T ss_pred HHHHHHHHhcCCCc-eEEEEEEEEEECeEEEEeccCccCCCCChhHHhc-cCceEEecCcE----------EEEEEEEcc
Confidence 45555666554444 467778988 77777554333334555555554 47777666553 346778999
Q ss_pred CC
Q 045892 84 DP 85 (130)
Q Consensus 84 ~~ 85 (130)
+-
T Consensus 159 ~~ 160 (220)
T PF03306_consen 159 EY 160 (220)
T ss_dssp GG
T ss_pred hh
Confidence 73
No 27
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=20.47 E-value=1.2e+02 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=20.7
Q ss_pred CccCHHHHHHHHHhh-cCCCceEEEEE
Q 045892 1 MAVHDDCKLKFMELK-AKRNYRFIIFK 26 (130)
Q Consensus 1 i~vs~e~~~a~~~~~-~~~~~~~vi~~ 26 (130)
|+.++||++++++|. .++.+++|+.=
T Consensus 38 vapT~el~~~l~~L~~~~G~VkyIVaP 64 (285)
T PF14234_consen 38 VAPTPELKAELDELEAQHGPVKYIVAP 64 (285)
T ss_pred CCCCHHHHHHHHHHhccCCceeEEEcC
Confidence 578999999999994 34479998873
No 28
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=20.06 E-value=61 Score=18.87 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=12.4
Q ss_pred CccCHHHHHHHHHhh
Q 045892 1 MAVHDDCKLKFMELK 15 (130)
Q Consensus 1 i~vs~e~~~a~~~~~ 15 (130)
|++++|+++.|+...
T Consensus 33 irld~dVl~~fka~G 47 (62)
T PF14384_consen 33 IRLDPDVLEWFKAQG 47 (62)
T ss_pred EEeCHHHHHHHHHHC
Confidence 578999999998853
Done!