BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045895
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 223 bits (567), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 128/158 (81%)
Query: 4 GTTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD 63
GTTIL A+++AVD ST VV+ +NPD++FVKS F YAIVAVGE PY ET GD++ LT+ +
Sbjct: 444 GTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPE 503
Query: 64 PDPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGF 123
P S + VC V+C ++ISGRP+V++P +++ DALVAAWLPG+EGQGVTD LFGD+GF
Sbjct: 504 PGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGF 563
Query: 124 SGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGLKTES 161
+G+LPR+WFK+VDQLPMNVGD HYDPLF +GL T +
Sbjct: 564 TGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTNA 601
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 223 bits (567), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 128/158 (81%)
Query: 4 GTTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD 63
GTTIL A+++AVD ST VV+ +NPD++FVKS F YAIVAVGE PY ET GD++ LT+ +
Sbjct: 444 GTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPE 503
Query: 64 PDPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGF 123
P S + VC V+C ++ISGRP+V++P +++ DALVAAWLPG+EGQGVTD LFGD+GF
Sbjct: 504 PGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGF 563
Query: 124 SGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGLKTES 161
+G+LPR+WFK+VDQLPMNVGD HYDPLF +GL T +
Sbjct: 564 TGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTNA 601
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 99.0 bits (245), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 38 DYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNV----CEAVKCVVIIISGRPIVIEPY 93
D AIV +GE PYAE GD L + + + + V + +SGRP+ +
Sbjct: 481 DVAIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKE 540
Query: 94 ISSVDALVAAWLPGTEGQGVTDVLFGD------YGFSGKLPRSWFKTVDQLPMNVGDPHY 147
+++ DA VAAWLPG+EG+GV DVL + + F+GKL SW K DQ +N+ D Y
Sbjct: 541 LNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADY 600
Query: 148 DPLFPFDFGLKTE---SVPSIVARST 170
DPLF + +GL + +VP + +++
Sbjct: 601 DPLFAYGYGLTYQDNINVPVLSEKTS 626
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 98.6 bits (244), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 38 DYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNV----CEAVKCVVIIISGRPIVIEPY 93
D AIV +GE PYAE GD L + + + + V + +SGRP+ +
Sbjct: 481 DVAIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKE 540
Query: 94 ISSVDALVAAWLPGTEGQGVTDVLFGD------YGFSGKLPRSWFKTVDQLPMNVGDPHY 147
+++ DA VAAWLPG+EG+GV DVL + + F+GKL SW K DQ +N+ D Y
Sbjct: 541 LNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADY 600
Query: 148 DPLFPFDFGLKTE---SVPSIVARST 170
DPLF + +GL + +VP + +++
Sbjct: 601 DPLFAYGYGLTYQDNINVPVLSEKTS 626
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 38 DYAIVAVGEAPYAETAG-DSMTLTMLDPDPSVITNVCEAVKCVVII-ISGRPIVIEPYIS 95
D A++ +G ET G D + + ++ V +A VI+ SG P+ P++
Sbjct: 575 DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEF-PWLE 633
Query: 96 SVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSW-FKTVDQ---------------- 137
+ALV AW G E G + DVL+GD +GKL SW FK D
Sbjct: 634 DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYG 693
Query: 138 LPMNVGDPHYDPL-----FPFDFGL 157
+ VG +Y+ L FPF +GL
Sbjct: 694 EDIFVGYRYYEKLQRKVAFPFGYGL 718
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 32/147 (21%)
Query: 55 DSMTLTMLDPDPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEG-QGV 113
D L++ +I+ V +A +++++ V+ P++S A++ W PG G +
Sbjct: 582 DRPNLSLPGTQDKLISAVADANPNTIVVLNTGSSVLMPWLSKTRAVLDMWYPGQAGAEAT 641
Query: 114 TDVLFGDYGFSGKLPRSWFKTVDQLPMNVGDP--------------------------HY 147
+L+GD SGKL +S F + GDP +
Sbjct: 642 AALLYGDVNPSGKLTQS-FPAAENQHAVAGDPTSYPGVDNQQTYREGIHVGYRWFDKENV 700
Query: 148 DPLFPFDFGLK----TESVPSIVARST 170
PLFPF GL T+S P++V ST
Sbjct: 701 KPLFPFGHGLSYTSFTQSAPTVVRTST 727
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 44.7 bits (104), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 24/102 (23%)
Query: 79 VVIIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSW-FKTVD 136
V++ SG P+ P++ +ALV AW G E G + DVL+GD +GKL SW FK D
Sbjct: 618 VIVNQSGTPVEF-PWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQD 676
Query: 137 QLP----------------MNVGDPHYDPL-----FPFDFGL 157
+ VG +Y+ L FPF +GL
Sbjct: 677 NPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGL 718
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 77 KCVVIIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFKTV 135
K +V++ G P+ + + VD ++ W G E G+ V DVL G SGKLP ++ +
Sbjct: 492 KVIVLLNIGSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDY 551
Query: 136 DQLPMNV--GDPHYDP 149
+P G+P +P
Sbjct: 552 SDVPSWTFPGEPKDNP 567
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 77 KCVVIIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFKTV 135
K +V++ G P+ + + VD ++ W G E G+ V DVL G SGKLP ++ +
Sbjct: 492 KVIVLLNIGSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDY 551
Query: 136 DQLPMNV--GDPHYDP 149
+P G+P +P
Sbjct: 552 SDVPSWTFPGEPKDNP 567
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 25 DNPDSDFVKSNNFDYAIVAV----GEAPYAETAGDSMTLTMLDP---DPSVITNVCEAVK 77
DN S + D AIV + GE Y G++ LDP +++ V A
Sbjct: 417 DNTSSGASAARGKDVAIVFITADSGEG-YITVEGNAGDRNNLDPWHNGNALVQAVAGANS 475
Query: 78 CVVIII-SGRPIVIEPYIS--SVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKL 127
V++++ S I++E ++ V A+V A LP E G + DVL+GD SGKL
Sbjct: 476 NVIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKL 529
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 25 DNPDSDFVKSNNFDYAIVAV----GEAPYAETAGDSMTLTMLDP---DPSVITNVCEAVK 77
DN S + D AIV + GE Y G++ LDP +++ V A
Sbjct: 416 DNTSSGASAARGKDVAIVFITADSGEG-YITVEGNAGDRNNLDPWHNGNALVQAVAGANS 474
Query: 78 CVVIII-SGRPIVIEPYIS--SVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKL 127
V++++ S I++E ++ V A+V A LP E G + DVL+GD SGKL
Sbjct: 475 NVIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKL 528
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 26.9 bits (58), Expect = 7.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 81 IIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGFSGKLPRSWFKTVDQLP 139
+I GR Y+ V A+ A + G G++ DYG K P + K+ DQLP
Sbjct: 265 LIEQGRTFNTNVYVPDVIAIAAFYRDWLYGGGLSATNVMDYGAYPKTP--YDKSTDQLP 321
>pdb|1OAH|A Chain A, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa).
pdb|1OAH|B Chain B, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa)
Length = 519
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 145 PHYDPLFPFDFGLKTESVPSIVARSTSAGVDGKPFVFL 182
P P+FP+D G E + + G DGKP F+
Sbjct: 246 PAAKPVFPWDNGFNPEDMYQYYKGHGAKGPDGKPGPFV 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,000,435
Number of Sequences: 62578
Number of extensions: 256409
Number of successful extensions: 462
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 14
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)