Query 045895
Match_columns 194
No_of_seqs 214 out of 1338
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15098 beta-D-glucoside gluc 100.0 4E-42 8.6E-47 330.4 17.5 168 2-169 437-658 (765)
2 PLN03080 Probable beta-xylosid 100.0 3.9E-40 8.4E-45 316.8 14.7 163 3-168 446-642 (779)
3 PF01915 Glyco_hydro_3_C: Glyc 100.0 1.4E-36 3E-41 253.3 11.7 158 3-161 44-227 (227)
4 TIGR01772 MDH_euk_gproteo mala 67.1 6.8 0.00015 34.6 3.6 54 31-90 62-121 (312)
5 TIGR01759 MalateDH-SF1 malate 66.1 4.3 9.4E-05 36.0 2.2 56 32-93 75-137 (323)
6 cd00300 LDH_like L-lactate deh 65.9 3.5 7.5E-05 35.9 1.5 58 32-92 62-122 (300)
7 TIGR01763 MalateDH_bact malate 63.9 4.4 9.6E-05 35.4 1.8 56 33-93 66-126 (305)
8 TIGR01756 LDH_protist lactate 63.8 3.6 7.9E-05 36.3 1.3 56 32-93 56-118 (313)
9 cd05290 LDH_3 A subgroup of L- 62.9 6.1 0.00013 34.7 2.5 59 31-93 63-127 (307)
10 COG1160 Predicted GTPases [Gen 62.6 15 0.00031 34.3 5.0 41 32-83 79-120 (444)
11 cd01337 MDH_glyoxysomal_mitoch 61.2 6.2 0.00013 34.8 2.2 53 32-90 64-122 (310)
12 KOG1496 Malate dehydrogenase [ 60.7 7.5 0.00016 33.8 2.6 85 2-93 44-138 (332)
13 PF00056 Ldh_1_N: lactate/mala 60.4 2.8 6.2E-05 32.4 -0.0 54 32-91 65-124 (141)
14 TIGR01771 L-LDH-NAD L-lactate 59.7 5.1 0.00011 35.0 1.5 56 32-93 60-121 (299)
15 cd01338 MDH_choloroplast_like 58.9 7 0.00015 34.6 2.2 56 32-93 74-136 (322)
16 COG0039 Mdh Malate/lactate deh 58.4 8.9 0.00019 34.1 2.7 57 31-93 64-126 (313)
17 cd05294 LDH-like_MDH_nadp A la 58.0 9 0.0002 33.5 2.7 59 32-93 68-129 (309)
18 PRK05086 malate dehydrogenase; 57.9 7.1 0.00015 34.3 2.0 97 32-134 65-177 (312)
19 PLN02602 lactate dehydrogenase 57.7 6 0.00013 35.5 1.6 57 32-93 101-162 (350)
20 PLN00135 malate dehydrogenase 56.1 7.9 0.00017 34.1 2.0 57 31-93 53-116 (309)
21 cd00704 MDH Malate dehydrogena 55.4 8.9 0.00019 33.9 2.3 55 32-92 72-133 (323)
22 TIGR02836 spore_IV_A stage IV 55.0 27 0.00059 32.7 5.4 97 36-138 144-252 (492)
23 PRK15062 hydrogenase isoenzyme 54.1 33 0.00072 31.1 5.7 62 8-80 43-114 (364)
24 cd05291 HicDH_like L-2-hydroxy 53.0 8.2 0.00018 33.5 1.6 55 33-93 65-125 (306)
25 TIGR00075 hypD hydrogenase exp 52.0 35 0.00076 31.0 5.5 40 8-47 49-98 (369)
26 PF06675 DUF1177: Protein of u 51.3 10 0.00022 32.8 1.9 31 112-157 159-189 (276)
27 PRK00066 ldh L-lactate dehydro 51.1 9.6 0.00021 33.5 1.8 56 32-93 69-130 (315)
28 cd01336 MDH_cytoplasmic_cytoso 49.5 12 0.00026 33.1 2.1 57 32-93 74-136 (325)
29 cd05293 LDH_1 A subgroup of L- 48.0 9 0.0002 33.7 1.1 55 33-93 68-128 (312)
30 PRK05442 malate dehydrogenase; 47.6 12 0.00027 33.1 1.9 56 32-93 76-138 (326)
31 TIGR01758 MDH_euk_cyt malate d 47.6 12 0.00027 33.0 1.9 57 31-93 70-133 (324)
32 PTZ00325 malate dehydrogenase; 47.4 13 0.00027 33.1 1.9 58 31-92 71-132 (321)
33 PLN00112 malate dehydrogenase 46.5 11 0.00024 35.0 1.5 56 32-93 172-234 (444)
34 TIGR01757 Malate-DH_plant mala 44.3 12 0.00027 34.1 1.4 56 32-93 116-178 (387)
35 cd01339 LDH-like_MDH L-lactate 43.0 22 0.00049 30.6 2.8 57 32-92 62-122 (300)
36 PTZ00082 L-lactate dehydrogena 42.7 48 0.001 29.2 4.9 57 32-93 70-136 (321)
37 PF01926 MMR_HSR1: 50S ribosom 42.7 23 0.0005 25.4 2.4 40 33-83 76-115 (116)
38 PF09547 Spore_IV_A: Stage IV 41.5 25 0.00054 33.0 2.9 75 63-139 167-253 (492)
39 PTZ00117 malate dehydrogenase; 41.0 17 0.00036 32.0 1.7 56 33-93 70-130 (319)
40 PRK13556 azoreductase; Provisi 40.7 43 0.00093 27.2 4.0 47 32-88 85-148 (208)
41 PF01924 HypD: Hydrogenase for 40.6 42 0.00092 30.4 4.2 39 9-47 39-87 (355)
42 cd05292 LDH_2 A subgroup of L- 40.6 18 0.00038 31.6 1.8 57 32-93 63-124 (308)
43 cd00650 LDH_MDH_like NAD-depen 40.4 13 0.00029 31.4 0.9 56 32-92 66-126 (263)
44 cd01858 NGP_1 NGP-1. Autoanti 39.8 78 0.0017 24.1 5.2 14 32-45 4-17 (157)
45 PF02421 FeoB_N: Ferrous iron 38.4 29 0.00063 27.5 2.6 36 35-83 77-113 (156)
46 cd01840 SGNH_hydrolase_yrhL_li 38.1 42 0.00092 25.5 3.4 38 35-82 49-86 (150)
47 TIGR02383 Hfq RNA chaperone Hf 37.0 58 0.0013 22.0 3.4 25 64-88 3-28 (61)
48 COG0486 ThdF Predicted GTPase 37.0 38 0.00082 31.7 3.4 43 30-83 290-332 (454)
49 PLN00106 malate dehydrogenase 36.4 31 0.00066 30.6 2.6 84 31-118 81-180 (323)
50 PRK00170 azoreductase; Reviewe 36.4 47 0.001 26.4 3.5 46 32-87 82-144 (201)
51 PRK06223 malate dehydrogenase; 34.5 30 0.00066 29.7 2.3 57 32-93 66-127 (307)
52 TIGR03566 FMN_reduc_MsuE FMN r 34.3 52 0.0011 25.9 3.4 46 32-87 64-113 (174)
53 PF06858 NOG1: Nucleolar GTP-b 33.6 45 0.00097 22.3 2.5 21 63-83 32-55 (58)
54 PF00009 GTP_EFTU: Elongation 33.3 83 0.0018 24.7 4.5 41 32-83 89-130 (188)
55 PF06283 ThuA: Trehalose utili 31.6 97 0.0021 25.1 4.8 54 18-82 33-88 (217)
56 cd01859 MJ1464 MJ1464. This f 30.2 1.3E+02 0.0027 22.7 4.9 39 34-83 10-49 (156)
57 cd06533 Glyco_transf_WecG_TagA 30.1 79 0.0017 25.0 3.9 22 68-90 91-113 (171)
58 PF12641 Flavodoxin_3: Flavodo 30.0 2.5E+02 0.0055 22.1 6.7 66 7-87 14-79 (160)
59 PRK00395 hfq RNA-binding prote 28.8 89 0.0019 22.2 3.4 25 64-88 7-32 (79)
60 PF10087 DUF2325: Uncharacteri 28.0 1.4E+02 0.0029 21.2 4.5 37 32-82 44-82 (97)
61 PRK00089 era GTPase Era; Revie 27.9 1.4E+02 0.003 25.3 5.2 40 33-83 81-121 (292)
62 cd01894 EngA1 EngA1 subfamily. 27.8 1.4E+02 0.003 21.7 4.7 40 33-83 73-113 (157)
63 PTZ00346 histone deacetylase; 27.3 1.7E+02 0.0036 27.3 5.9 78 36-130 268-348 (429)
64 PF02358 Trehalose_PPase: Treh 27.1 22 0.00049 29.3 0.2 47 61-107 20-66 (235)
65 PRK13555 azoreductase; Provisi 26.9 84 0.0018 25.9 3.6 12 33-44 86-97 (208)
66 COG1056 NadR Nicotinamide mono 26.0 2E+02 0.0044 23.4 5.5 99 32-135 25-128 (172)
67 PF09587 PGA_cap: Bacterial ca 26.0 1.3E+02 0.0028 25.1 4.7 63 35-108 182-245 (250)
68 PF12724 Flavodoxin_5: Flavodo 25.9 2E+02 0.0044 21.7 5.4 45 32-86 39-86 (143)
69 PF09370 TIM-br_sig_trns: TIM- 25.4 77 0.0017 27.6 3.1 55 35-91 169-227 (268)
70 PRK09739 hypothetical protein; 25.0 81 0.0017 25.3 3.1 47 32-88 75-133 (199)
71 PRK15494 era GTPase Era; Provi 25.0 1.5E+02 0.0032 26.2 5.0 40 33-83 128-168 (339)
72 KOG1495 Lactate dehydrogenase 24.5 63 0.0014 28.7 2.5 55 34-93 86-145 (332)
73 PRK00443 nagB glucosamine-6-ph 24.4 1.8E+02 0.0038 24.2 5.2 35 95-133 194-230 (261)
74 PRK01355 azoreductase; Reviewe 24.1 1E+02 0.0022 24.8 3.6 31 32-72 73-103 (199)
75 smart00854 PGA_cap Bacterial c 24.0 2.1E+02 0.0046 23.6 5.5 63 35-108 171-234 (239)
76 TIGR03594 GTPase_EngA ribosome 23.9 1.3E+02 0.0029 26.9 4.6 40 33-83 75-115 (429)
77 TIGR00685 T6PP trehalose-phosp 23.9 1E+02 0.0023 25.5 3.7 28 61-88 26-53 (244)
78 TIGR00436 era GTP-binding prot 23.0 1.8E+02 0.0039 24.5 5.0 39 33-83 76-115 (270)
79 cd01857 HSR1_MMR1 HSR1/MMR1. 22.6 1.8E+02 0.004 21.6 4.6 13 32-44 7-19 (141)
80 KOG1145 Mitochondrial translat 22.3 4.8E+02 0.01 25.6 7.9 39 34-83 222-261 (683)
81 TIGR00696 wecB_tagA_cpsF bacte 22.1 1.5E+02 0.0032 23.9 4.1 26 64-90 88-114 (177)
82 cd01879 FeoB Ferrous iron tran 22.1 2.3E+02 0.005 20.6 5.0 36 35-83 73-109 (158)
83 COG2390 DeoR Transcriptional r 21.9 1.6E+02 0.0034 26.3 4.5 84 31-121 202-302 (321)
84 PF05953 Allatostatin: Allatos 21.7 48 0.001 14.9 0.7 8 149-156 4-11 (11)
85 COG1159 Era GTPase [General fu 21.3 2.6E+02 0.0057 24.8 5.7 42 31-83 80-122 (298)
86 PRK09518 bifunctional cytidyla 20.7 1.5E+02 0.0032 29.1 4.5 40 33-83 351-391 (712)
87 TIGR01696 deoB phosphopentomut 20.1 1.4E+02 0.003 27.4 3.9 39 43-81 194-233 (381)
88 cd01821 Rhamnogalacturan_acety 20.1 1.4E+02 0.003 23.4 3.5 14 35-48 64-77 (198)
89 COG0391 Uncharacterized conser 20.1 1.3E+02 0.0028 26.9 3.6 53 29-89 182-235 (323)
No 1
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=4e-42 Score=330.36 Aligned_cols=168 Identities=28% Similarity=0.540 Sum_probs=145.8
Q ss_pred CCccCHHHHHHhhcCCCcEEEEecCCC------------------------------hhhhhcCCCCEEEEEecCCCccc
Q 045895 2 ATGTTILGAIRSAVDSSTEVVYRDNPD------------------------------SDFVKSNNFDYAIVAVGEAPYAE 51 (194)
Q Consensus 2 ~~~~t~~~~l~~~~~~~~~v~~~~~~~------------------------------~~~~~a~~aD~vIv~vg~~~~~e 51 (194)
++.+||++||+++++++.++.|..||+ ++++++++||+|||++|+....+
T Consensus 437 ~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~ 516 (765)
T PRK15098 437 DQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMA 516 (765)
T ss_pred CCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCcc
Confidence 356899999999887666788877652 13456789999999999876445
Q ss_pred ccC-CCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCch-HHHHHHHHcCCCCCCCCcc
Q 045895 52 TAG-DSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLP 128 (194)
Q Consensus 52 ~~g-dr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~-g~AlAdvL~G~~nPsGkLP 128 (194)
.|+ ||.+|.||+.|.+||+++++ ++|+|+|+++|+|++|.++.++++|||++|+||++ |+|+||+|||++|||||||
T Consensus 517 ~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVvVl~~g~P~~l~~~~~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLP 596 (765)
T PRK15098 517 HEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLP 596 (765)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHhCcCEEEEEeCCceeeccchhhcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCc
Confidence 555 99999999999999999988 89999999999999996444599999999999999 9999999999999999999
Q ss_pred eeecCCCCCCCccC-----------------CCCCC----CccCCCcccCCCCccccccccc
Q 045895 129 RSWFKTVDQLPMNV-----------------GDPHY----DPLFPFDFGLKTESVPSIVARS 169 (194)
Q Consensus 129 vT~p~~~~~~p~~~-----------------~~~~~----~p~ypFG~GLsYt~f~~~~~~~ 169 (194)
+|||++.+|+|.++ +|||| +|+||||||||||+|+|+++..
T Consensus 597 vT~p~~~~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v 658 (765)
T PRK15098 597 MSFPRSVGQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKL 658 (765)
T ss_pred cceeCCCCcCccccccCCCCCccccCcccccccceeccCCCccccccCCCCCccEEeeccEe
Confidence 99999999999643 24666 5999999999999999999863
No 2
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=3.9e-40 Score=316.79 Aligned_cols=163 Identities=21% Similarity=0.438 Sum_probs=140.0
Q ss_pred CccCHHHHHHhhcCCCcEEEEecCCC-----------hhhhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHHHHH
Q 045895 3 TGTTILGAIRSAVDSSTEVVYRDNPD-----------SDFVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPSVIT 70 (194)
Q Consensus 3 ~~~t~~~~l~~~~~~~~~v~~~~~~~-----------~~~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~li~ 70 (194)
+.+|+++||++++. .+.|..+|+ ++++++++||+|||++|.+...+.|+ ||.+|.||..|++||+
T Consensus 446 ~~~t~~~gl~~~~~---~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~ 522 (779)
T PLN03080 446 QPTTLFKGLQAYVK---KTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLIS 522 (779)
T ss_pred CCCCHHHHHHHHhh---cceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHH
Confidence 45899999999874 356777653 23567899999999999877555555 9999999999999999
Q ss_pred HHhh-C-CCEEEEEecCcceeccccc--cccceeEEccCCCch-HHHHHHHHcCCCCCCCCcceee-cCCCCCCCcc-C-
Q 045895 71 NVCE-A-VKCVVIIISGRPIVIEPYI--SSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSW-FKTVDQLPMN-V- 142 (194)
Q Consensus 71 ~l~~-~-~~vVvVl~~g~P~~l~~~~--~~~~Ail~a~~pG~~-g~AlAdvL~G~~nPsGkLPvT~-p~~~~~~p~~-~- 142 (194)
++++ + +|||||+++|+|++|.++. ++++|||++|+||++ |+|+||||||++|||||||+|| |++.+|+|.+ +
T Consensus 523 ~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~~~~P~~~~~ 602 (779)
T PLN03080 523 SVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESFTAVPMTDMN 602 (779)
T ss_pred HHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeecccccccCCccccC
Confidence 9997 4 5899999999999995433 379999999999999 9999999999999999999999 8888899976 2
Q ss_pred ------------CCCCC--CccCCCcccCCCCcccccccc
Q 045895 143 ------------GDPHY--DPLFPFDFGLKTESVPSIVAR 168 (194)
Q Consensus 143 ------------~~~~~--~p~ypFG~GLsYt~f~~~~~~ 168 (194)
+|||| +|+||||||||||+|+|++++
T Consensus 603 ~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~ 642 (779)
T PLN03080 603 MRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILS 642 (779)
T ss_pred cccccccCCCCCCceeCCCCcceeccCCCccceeEecccc
Confidence 27777 599999999999999999874
No 3
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=1.4e-36 Score=253.29 Aligned_cols=158 Identities=33% Similarity=0.561 Sum_probs=118.2
Q ss_pred CccCHHHHHHhhcCCCcEEEEecC--------CChhhhhcCCCCEEEEEecCCCcccc-------cCCCCCCCCCCChHH
Q 045895 3 TGTTILGAIRSAVDSSTEVVYRDN--------PDSDFVKSNNFDYAIVAVGEAPYAET-------AGDSMTLTMLDPDPS 67 (194)
Q Consensus 3 ~~~t~~~~l~~~~~~~~~v~~~~~--------~~~~~~~a~~aD~vIv~vg~~~~~e~-------~gdr~~l~l~~~q~~ 67 (194)
...|++++|++++........... .+.+...++++|+|||++|... .|. +.|+.++.++..|++
T Consensus 44 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vIv~~~~~~-~e~~~~~~~~~~~~~~~~l~~~q~~ 122 (227)
T PF01915_consen 44 YGVTPLDALKQRFGNAGVVVPEGGDAVDDDEGIDEAVAAAKEADVVIVFVGRPS-GEGNDNNTEGESDRSDLALPANQQE 122 (227)
T ss_dssp THBHHHHHHHHHHHTTSEEEECCCCCCCCCSCHHHHHHHHHCSSEEEEEEETTS-BCCCSS-EETTGSCSSTBCCCHHHH
T ss_pred ccccHHhhhccccCCCceEEeeeccccccccchHHHHHHhhcCCEEEEeccccc-cccccccccccCCcccccchhhHHH
Confidence 357999999999875433322211 1123566789999999999322 222 258999999999999
Q ss_pred HHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCch-HHHHHHHHcCCCCCCCCcceeecCCCCCCCccCCC-
Q 045895 68 VITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFKTVDQLPMNVGD- 144 (194)
Q Consensus 68 li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~-g~AlAdvL~G~~nPsGkLPvT~p~~~~~~p~~~~~- 144 (194)
||+++++ ++|+|||+++|+||++.+|.++++|||++|++|++ ++|+||+|||++|||||||+|||++.+++|.++.+
T Consensus 123 li~~v~~~~~~~Ivvv~~~~P~~l~~~~~~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p~~~~~~p~~~~~~ 202 (227)
T PF01915_consen 123 LIKAVAAAGKKVIVVVNSGNPYDLDPWEDNVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIPKSMEDIPAYYNYG 202 (227)
T ss_dssp HHHHHHHHHSCEEEEEE-SSGGCGHCCHHC-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BESSGGGTTTTTTTS
T ss_pred HHHHHHHhcCCeEEEEecCCccccHHHHhhhceEeeccccchHHHHHHHHHHcCCCCCCCCcceeccCChhhCCCccccc
Confidence 9999998 79999999999999999898999999999999999 99999999999999999999999999999987643
Q ss_pred ---CCC-----CccCCCcccCCCCc
Q 045895 145 ---PHY-----DPLFPFDFGLKTES 161 (194)
Q Consensus 145 ---~~~-----~p~ypFG~GLsYt~ 161 (194)
++| .++||||||||||+
T Consensus 203 ~~~~~~~~~~~~~~~~fG~GLsyt~ 227 (227)
T PF01915_consen 203 MYGRTYDYDSGPPLYPFGYGLSYTY 227 (227)
T ss_dssp -THCCHHHHTTSESB-TT--B-TT-
T ss_pred ccCcccccCCCCccCcCCCCCEeeC
Confidence 332 69999999999984
No 4
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=67.05 E-value=6.8 Score=34.55 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=32.0
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceec
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVI 90 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l 90 (194)
....+++|+||++.|.... .| +|.+ +-..-. +..+++.+ +.+.++++. .||.++
T Consensus 62 ~~~~~daDivvitaG~~~~---~g~~R~d--ll~~N~~I~~~i~~~i~~~~p~~iiivv-sNPvDv 121 (312)
T TIGR01772 62 ENALKGADVVVIPAGVPRK---PGMTRDD--LFNVNAGIVKDLVAAVAESCPKAMILVI-TNPVNS 121 (312)
T ss_pred HHHcCCCCEEEEeCCCCCC---CCccHHH--HHHHhHHHHHHHHHHHHHhCCCeEEEEe-cCchhh
Confidence 3568899999999986431 12 3332 222222 23444555 566666655 999984
No 5
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=66.14 E-value=4.3 Score=35.96 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=33.3
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh-CC-CEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE-AV-KCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~-~~-~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||+..|... ..| +|.+ |-..- +++.+++.+ +. +.++++. +||+++.-+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~d--ll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 137 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERAD--LLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTNAL 137 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHH--HHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 56789999999998642 112 3322 11111 234555656 55 6777666 799987543
No 6
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=65.90 E-value=3.5 Score=35.91 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=33.0
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCC--ChHHHHHHHhh-CCCEEEEEecCcceeccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD--PDPSVITNVCE-AVKCVVIIISGRPIVIEP 92 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~--~q~~li~~l~~-~~~vVvVl~~g~P~~l~~ 92 (194)
..+++||+||++.|.... +. .+|.++-... --+++.+++.+ +++.++++. ++|.++.-
T Consensus 62 ~~l~~aDiVIitag~p~~-~~-~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~-sNP~d~~~ 122 (300)
T cd00300 62 ADAADADIVVITAGAPRK-PG-ETRLDLINRNAPILRSVITNLKKYGPDAIILVV-SNPVDILT 122 (300)
T ss_pred HHhCCCCEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc-cChHHHHH
Confidence 467899999999986431 11 1443221110 11234455555 556666655 89998754
No 7
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=63.92 E-value=4.4 Score=35.41 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=32.3
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHH----HHHHhh-CCCEEEEEecCcceecccc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSV----ITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~l----i~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++|+||+++|.... . +++|.+ +-....++ ++++.+ +.+.++++. .||.++.-.
T Consensus 66 ~~~~aDiVIitag~p~~-~-~~sR~~--l~~~N~~iv~~i~~~I~~~~p~~~iIv~-tNP~di~t~ 126 (305)
T TIGR01763 66 DTANSDIVVITAGLPRK-P-GMSRED--LLSMNAGIVREVTGRIMEHSPNPIIVVV-SNPLDAMTY 126 (305)
T ss_pred HhCCCCEEEEcCCCCCC-c-CCCHHH--HHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHH
Confidence 36899999999996431 1 113322 22223333 444555 556666555 899988543
No 8
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=63.82 E-value=3.6 Score=36.30 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=32.0
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-CCC-EEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-AVK-CVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~~~-vVvVl~~g~P~~l~~~ 93 (194)
..++++|+||+..|... ..| +|.+ +-..-. ++.+++.+ ++| .++++. +||+++.-+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~d--ll~~N~~I~~~i~~~i~~~a~~~~ivivv-tNPvDv~t~ 118 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRAD--LLTKNTPIFKATGEALSEYAKPTVKVLVI-GNPVNTNCL 118 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHH--HHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCchHHHHH
Confidence 46789999999998632 112 3322 111112 34455555 556 545555 899987543
No 9
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=62.94 E-value=6.1 Score=34.70 Aligned_cols=59 Identities=19% Similarity=0.437 Sum_probs=34.1
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHHH----HHHHhh-CCCEEEEEecCcceecccc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPSV----ITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~l----i~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
...+++||+||++.|... ..| +|..++|-..-.++ ++++.+ +.+.++++. .||.++.-+
T Consensus 63 y~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivv-sNPvDv~t~ 127 (307)
T cd05290 63 YDDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILI-TNPLDIAVY 127 (307)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe-cCcHHHHHH
Confidence 356789999999998643 112 22112222222334 444555 556666655 999988654
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=62.63 E-value=15 Score=34.29 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=29.6
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
.++++||++|+++-. .-++.+..+++.+.|.. ++|+|+|++
T Consensus 79 ~Ai~eADvilfvVD~-----------~~Git~~D~~ia~~Lr~~~kpviLvvN 120 (444)
T COG1160 79 IAIEEADVILFVVDG-----------REGITPADEEIAKILRRSKKPVILVVN 120 (444)
T ss_pred HHHHhCCEEEEEEeC-----------CCCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 457899999999932 12345555666666767 699999997
No 11
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=61.18 E-value=6.2 Score=34.83 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=31.8
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceec
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVI 90 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l 90 (194)
..++++|+||++.|... ..| +|.+ |-..-. ++++++.+ +...++++. .||.++
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~d--ll~~N~~i~~~i~~~i~~~~p~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDD--LFNINAGIVRDLATAVAKACPKALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCeEEEEc-cCchhh
Confidence 56889999999998643 111 3322 222222 23445555 566666666 999987
No 12
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=60.71 E-value=7.5 Score=33.84 Aligned_cols=85 Identities=14% Similarity=0.332 Sum_probs=45.6
Q ss_pred CCccCHHHHHHhhcCCCcEEEEec---CCChhhhhcCCCCEEEEEecCCCcccccC-CCCC-----CCCCCChHHHHHHH
Q 045895 2 ATGTTILGAIRSAVDSSTEVVYRD---NPDSDFVKSNNFDYAIVAVGEAPYAETAG-DSMT-----LTMLDPDPSVITNV 72 (194)
Q Consensus 2 ~~~~t~~~~l~~~~~~~~~v~~~~---~~~~~~~~a~~aD~vIv~vg~~~~~e~~g-dr~~-----l~l~~~q~~li~~l 72 (194)
|.+.+.|||.+-.+.+.. +..-. ....+..+.++-|++|++ |..| ..+| .|++ ..+-..|-+-+++-
T Consensus 44 ~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkdv~~ailv-Ga~P--R~eGMERkDll~~NvkIfk~Qg~AL~k~ 119 (332)
T KOG1496|consen 44 PPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKDVDVAILV-GAMP--RREGMERKDLLSANVKIFKSQGAALEKY 119 (332)
T ss_pred chHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhccCcEEEEe-cccc--CcccchhhhHHhhcceeehhhhHHHHHh
Confidence 445666676665544311 00000 011233456788988886 5455 3333 4443 44556777777777
Q ss_pred hh-CCCEEEEEecCcceecccc
Q 045895 73 CE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 73 ~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
++ +.+|+|| |+|-..+.+
T Consensus 120 A~~~~KVlVV---gNPaNTNal 138 (332)
T KOG1496|consen 120 AKPNVKVLVV---GNPANTNAL 138 (332)
T ss_pred cCCCceEEEe---cCccccchh
Confidence 66 5566655 667665544
No 13
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=60.39 E-value=2.8 Score=32.39 Aligned_cols=54 Identities=15% Similarity=0.423 Sum_probs=30.3
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHH----HHHHHhh-CCCEEEEEecCcceecc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPS----VITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~----li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
..++++|+||++.|... .+| +|.+ |-....+ +.+++.+ +.+.++++. ++|+++.
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~--ll~~N~~i~~~~~~~i~~~~p~~~vivv-tNPvd~~ 124 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLD--LLEANAKIVKEIAKKIAKYAPDAIVIVV-TNPVDVM 124 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHH--HHHHHHHHHHHHHHHHHHHSTTSEEEE--SSSHHHH
T ss_pred cccccccEEEEeccccc---cccccHHH--HHHHhHhHHHHHHHHHHHhCCccEEEEe-CCcHHHH
Confidence 45789999999988642 111 2222 1122222 3444555 655666555 8999864
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=59.65 E-value=5.1 Score=34.98 Aligned_cols=56 Identities=16% Similarity=0.424 Sum_probs=32.9
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||++.|... ..| +|.++ -..-. ++.+++.+ +.+.++++. +||.++.-+
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p~~~vivv-sNP~d~~t~ 121 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSGFDGIFLVA-TNPVDILTY 121 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCeEEEEe-CCHHHHHHH
Confidence 46789999999998643 112 33321 11112 23445555 566666665 899987543
No 15
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=58.90 E-value=7 Score=34.57 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=32.5
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHH----HHHHHhh-CC-CEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPS----VITNVCE-AV-KCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~----li~~l~~-~~-~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||++.|... ..| +|.++ -..-.+ +.+++.+ ++ ..++++. +||+++.-+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t~ 136 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTNAL 136 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHHHH
Confidence 46789999999998642 112 33322 222222 3445555 53 5666555 899987544
No 16
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=58.39 E-value=8.9 Score=34.06 Aligned_cols=57 Identities=18% Similarity=0.424 Sum_probs=36.1
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
...+++||+||++.|... ..| +|.+| -.. .+++.+++.+ +.+.++++. +||+++.-+
T Consensus 64 y~~~~~aDiVvitAG~pr---KpGmtR~DL--l~~Na~I~~~i~~~i~~~~~d~ivlVv-tNPvD~~ty 126 (313)
T COG0039 64 YEDLKGADIVVITAGVPR---KPGMTRLDL--LEKNAKIVKDIAKAIAKYAPDAIVLVV-TNPVDILTY 126 (313)
T ss_pred hhhhcCCCEEEEeCCCCC---CCCCCHHHH--HHhhHHHHHHHHHHHHhhCCCeEEEEe-cCcHHHHHH
Confidence 356789999999998643 222 44332 222 2234555666 566777766 999998755
No 17
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=58.00 E-value=9 Score=33.52 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=31.5
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCC--CChHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTML--DPDPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~--~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||++|++.|... ....+|.++--. .--++..+++.+ +...++++. ++|+++.-+
T Consensus 68 ~~l~~aDiViitag~p~--~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~-~npvd~~t~ 129 (309)
T cd05294 68 SDVAGSDIVIITAGVPR--KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVV-TNPVDVMTY 129 (309)
T ss_pred HHhCCCCEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-CCchHHHHH
Confidence 35789999999998643 111133221000 011123444444 455566555 799986544
No 18
>PRK05086 malate dehydrogenase; Provisional
Probab=57.93 E-value=7.1 Score=34.30 Aligned_cols=97 Identities=14% Similarity=0.034 Sum_probs=49.0
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCC---ChHHHHHHHhh-CCCEEEEEecCcceeccccc-----------cc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD---PDPSVITNVCE-AVKCVVIIISGRPIVIEPYI-----------SS 96 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~---~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~-----------~~ 96 (194)
..++++|+||++.|....... +|.++ +.. --+++++++.+ +.+-++++. .||.++.-+. +.
T Consensus 65 ~~l~~~DiVIitaG~~~~~~~--~R~dl-l~~N~~i~~~ii~~i~~~~~~~ivivv-sNP~D~~t~~~~~~~~~~sg~p~ 140 (312)
T PRK05086 65 PALEGADVVLISAGVARKPGM--DRSDL-FNVNAGIVKNLVEKVAKTCPKACIGII-TNPVNTTVAIAAEVLKKAGVYDK 140 (312)
T ss_pred HHcCCCCEEEEcCCCCCCCCC--CHHHH-HHHHHHHHHHHHHHHHHhCCCeEEEEc-cCchHHHHHHHHHHHHHhcCCCH
Confidence 456889999999997431111 22221 111 12345566666 555555554 9999643221 12
Q ss_pred cceeEEccCCCch-HHHHHHHHcCCCCCCCCcceeecCC
Q 045895 97 VDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFKT 134 (194)
Q Consensus 97 ~~Ail~a~~pG~~-g~AlAdvL~G~~nPsGkLPvT~p~~ 134 (194)
-..+=.+.++... -..+|+.| | ++|+---..-|..+
T Consensus 141 ~rvig~~~Lds~R~~~~ia~~l-~-~~~~~v~~~v~GeH 177 (312)
T PRK05086 141 NKLFGVTTLDVIRSETFVAELK-G-KQPGEVEVPVIGGH 177 (312)
T ss_pred HHEEeeecHHHHHHHHHHHHHh-C-CChhheEEEEEEec
Confidence 2223233333333 56666664 3 45554444444444
No 19
>PLN02602 lactate dehydrogenase
Probab=57.66 E-value=6 Score=35.50 Aligned_cols=57 Identities=18% Similarity=0.397 Sum_probs=32.8
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||++.|.... .. -+|.++ -..-. ++.+++.+ +.+.++++. .||.++.-.
T Consensus 101 ~~~~daDiVVitAG~~~k-~g-~tR~dl--l~~N~~I~~~i~~~I~~~~p~~ivivv-tNPvdv~t~ 162 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQI-PG-ESRLNL--LQRNVALFRKIIPELAKYSPDTILLIV-SNPVDVLTY 162 (350)
T ss_pred HHhCCCCEEEECCCCCCC-cC-CCHHHH--HHHHHHHHHHHHHHHHHHCCCeEEEEe-cCchHHHHH
Confidence 347899999999986431 11 133222 22222 23444555 567777666 799987543
No 20
>PLN00135 malate dehydrogenase
Probab=56.06 E-value=7.9 Score=34.12 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=33.6
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh--CCCEEEEEecCcceecccc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE--AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~--~~~vVvVl~~g~P~~l~~~ 93 (194)
...+++||+||+..|... ..| +|.+ +-..- +++++++.+ ++..++++. +||+++.-+
T Consensus 53 y~~~~daDiVVitAG~~~---k~g~sR~d--ll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv~t~ 116 (309)
T PLN00135 53 VEACKGVNIAVMVGGFPR---KEGMERKD--VMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANTNAL 116 (309)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHH--HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHHHHH
Confidence 356789999999998643 111 3322 11111 234555655 356666665 799987654
No 21
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=55.36 E-value=8.9 Score=33.92 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=31.9
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-C-CCEEEEEecCcceeccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-A-VKCVVIIISGRPIVIEP 92 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~-~~vVvVl~~g~P~~l~~ 92 (194)
..++++|+||+..|... ..| +|.+ +-..-. ++.+++.+ + +..++++. +||+++.-
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~d--ll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t 133 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERAD--LLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTNA 133 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHH--HHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHHH
Confidence 56789999999988632 111 3322 122222 34445555 4 56666665 89998654
No 22
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=54.96 E-value=27 Score=32.74 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=54.7
Q ss_pred CCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccc------ccc--ccceeEEcc-C
Q 045895 36 NFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEP------YIS--SVDALVAAW-L 105 (194)
Q Consensus 36 ~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~------~~~--~~~Ail~a~-~ 105 (194)
.+|+.||+..... -++=+|.+ .-..++++|+++.+ ++|.|+|+++..|+.-.. +.+ +++.+.+.. +
T Consensus 144 hstIgivVtTDgs--i~dI~Re~--y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 144 HSTIGVVVTTDGT--ITDIPRED--YVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred cCcEEEEEEcCCC--cccccccc--chHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH
Confidence 7899998874321 11003333 44567789999998 999999999999984221 111 234333332 3
Q ss_pred CCch--HHHHHHHHcCCCCCCCCcceeecCCCCCC
Q 045895 106 PGTE--GQGVTDVLFGDYGFSGKLPRSWFKTVDQL 138 (194)
Q Consensus 106 pG~~--g~AlAdvL~G~~nPsGkLPvT~p~~~~~~ 138 (194)
-.++ .+-+-++|+- =|=-.+-+.+|+=.+-+
T Consensus 220 l~~~DI~~il~~vL~E--FPv~Ei~~~~P~Wve~L 252 (492)
T TIGR02836 220 MRESDILSVLEEVLYE--FPILEINIDLPSWVEVL 252 (492)
T ss_pred cCHHHHHHHHHHHHhc--CCceEEEeeCchHHHhc
Confidence 3333 5666777764 23333334445443333
No 23
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=54.07 E-value=33 Score=31.14 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCcEEEEecCCC----------hhhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCC
Q 045895 8 LGAIRSAVDSSTEVVYRDNPD----------SDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVK 77 (194)
Q Consensus 8 ~~~l~~~~~~~~~v~~~~~~~----------~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~ 77 (194)
.-||++.+.++.++..-+||. .+...+.+-+++|...|+. +..|+.+..|.++-+++..
T Consensus 43 r~Gir~lLP~~ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDm-----------lRVPGs~~SL~~ara~Gad 111 (364)
T PRK15062 43 RYGLRSLLPENIELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDM-----------LRVPGSKGSLLEAKAEGAD 111 (364)
T ss_pred HhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecccc-----------ccCCCCcCCHHHHHhCCCC
Confidence 357888888777777777874 2445566779999999863 3344444445554444444
Q ss_pred EEE
Q 045895 78 CVV 80 (194)
Q Consensus 78 vVv 80 (194)
|=+
T Consensus 112 Vri 114 (364)
T PRK15062 112 VRI 114 (364)
T ss_pred EEE
Confidence 433
No 24
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=53.03 E-value=8.2 Score=33.53 Aligned_cols=55 Identities=11% Similarity=0.436 Sum_probs=31.3
Q ss_pred hcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHHH----HHHHhh-CCCEEEEEecCcceecccc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPSV----ITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~l----i~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++|++|++.|... ..| +|.+ +-..-.++ .+++.+ +...++++. +||.++.-.
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~d--ll~~N~~i~~~~~~~i~~~~~~~~vivv-sNP~d~~~~ 125 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLD--LLEKNAKIMKSIVPKIKASGFDGIFLVA-SNPVDVITY 125 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCeEEEEe-cChHHHHHH
Confidence 4689999999998643 112 3322 11112223 344445 556666555 899987543
No 25
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=51.98 E-value=35 Score=31.04 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=29.5
Q ss_pred HHHHHhhcCCCcEEEEecCCC----------hhhhhcCCCCEEEEEecCC
Q 045895 8 LGAIRSAVDSSTEVVYRDNPD----------SDFVKSNNFDYAIVAVGEA 47 (194)
Q Consensus 8 ~~~l~~~~~~~~~v~~~~~~~----------~~~~~a~~aD~vIv~vg~~ 47 (194)
.-||++.+.++.++...+||. .+...+.+-|++|...|+.
T Consensus 49 r~Gir~LLp~~IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDm 98 (369)
T TIGR00075 49 KYGLRDLLPENLELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDM 98 (369)
T ss_pred HhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchh
Confidence 357888888777777778874 2345566789999999864
No 26
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=51.31 E-value=10 Score=32.83 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=23.3
Q ss_pred HHHHHHcCCCCCCCCcceeecCCCCCCCccCCCCCCCccCCCcccC
Q 045895 112 GVTDVLFGDYGFSGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGL 157 (194)
Q Consensus 112 AlAdvL~G~~nPsGkLPvT~p~~~~~~p~~~~~~~~~p~ypFG~GL 157 (194)
-+.+++- .-+||+|+++|-+.+|+- |+|.||
T Consensus 159 dLl~im~---~~TG~~~~~~PlT~qDIT------------PygNgv 189 (276)
T PF06675_consen 159 DLLDIME---RVTGKLPVTFPLTTQDIT------------PYGNGV 189 (276)
T ss_pred HHHHHHH---hhcCCCceEEeccccccc------------cCCCCc
Confidence 3444443 368999999999999985 777776
No 27
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=51.11 E-value=9.6 Score=33.51 Aligned_cols=56 Identities=13% Similarity=0.409 Sum_probs=31.8
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHHH----HHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPSV----ITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~l----i~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||+..|... ..| +|.+ +-..-..+ ++++.+ +.+.++++. ++|.++.-+
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~d--ll~~N~~i~~~i~~~i~~~~~~~~vivv-sNP~d~~~~ 130 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLD--LVEKNLKIFKSIVGEVMASGFDGIFLVA-SNPVDILTY 130 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCeEEEEc-cCcHHHHHH
Confidence 45789999999998642 111 3322 11112223 444555 556666555 899987543
No 28
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=49.46 E-value=12 Score=33.05 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=31.6
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCCh----HHHHHHHhh-C-CCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPD----PSVITNVCE-A-VKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q----~~li~~l~~-~-~~vVvVl~~g~P~~l~~~ 93 (194)
..++++|+||++.|... ....+|.+ +-..- +++.+++.+ + +..++++. +||+++...
T Consensus 74 ~~l~~aDiVI~tAG~~~--~~~~~R~~--l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t~ 136 (325)
T cd01336 74 EAFKDVDVAILVGAMPR--KEGMERKD--LLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANTNAL 136 (325)
T ss_pred HHhCCCCEEEEeCCcCC--CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHHHHH
Confidence 45789999999988632 11112222 12222 233445555 3 46666666 799977543
No 29
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.05 E-value=9 Score=33.69 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=32.4
Q ss_pred hcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+++||+||++.|..+. .| +|.+ |-.. -+++.+++.+ +.+-++++. +||.++.-+
T Consensus 68 ~~~~adivvitaG~~~k---~g~~R~d--ll~~N~~i~~~~~~~i~~~~p~~~vivv-sNP~d~~t~ 128 (312)
T cd05293 68 VTANSKVVIVTAGARQN---EGESRLD--LVQRNVDIFKGIIPKLVKYSPNAILLVV-SNPVDIMTY 128 (312)
T ss_pred HhCCCCEEEECCCCCCC---CCCCHHH--HHHHHHHHHHHHHHHHHHhCCCcEEEEc-cChHHHHHH
Confidence 47899999999986431 12 3322 1111 1234455555 566666665 899987543
No 30
>PRK05442 malate dehydrogenase; Provisional
Probab=47.62 E-value=12 Score=33.11 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=31.8
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHH----HHHHHhh-C-CCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPS----VITNVCE-A-VKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~----li~~l~~-~-~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||++.|... .+| +|.+ |-..-.+ +.+++.+ . +..++++. +||+++.-.
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~d--ll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 138 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKD--LLEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTNAL 138 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHH--HHHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHHHH
Confidence 45789999999988532 112 3322 2222222 3445555 4 35566555 799987544
No 31
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=47.60 E-value=12 Score=33.01 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=32.7
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-C-CCEEEEEecCcceecccc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-A-VKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~-~~vVvVl~~g~P~~l~~~ 93 (194)
...++++|+||+..|... . ++ +|.+ +-..-. ++.+++.+ + +..++++. +||+++.-+
T Consensus 70 ~~~~~~aDiVVitAG~~~--~-~~~tr~~--ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 133 (324)
T TIGR01758 70 AVAFTDVDVAILVGAFPR--K-EGMERRD--LLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTNAL 133 (324)
T ss_pred HHHhCCCCEEEEcCCCCC--C-CCCcHHH--HHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 356789999999988642 1 11 2322 112222 23445555 3 45777666 799987543
No 32
>PTZ00325 malate dehydrogenase; Provisional
Probab=47.40 E-value=13 Score=33.05 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=33.2
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCC---ChHHHHHHHhh-CCCEEEEEecCcceeccc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD---PDPSVITNVCE-AVKCVVIIISGRPIVIEP 92 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~---~q~~li~~l~~-~~~vVvVl~~g~P~~l~~ 92 (194)
...++++|+||++.|... ....+|.++ +.. .-+++++++.+ +.+-++++. .+|++..-
T Consensus 71 ~~~l~gaDvVVitaG~~~--~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~~iviv~-SNPvdv~~ 132 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR--KPGMTRDDL-FNTNAPIVRDLVAAVASSAPKAIVGIV-SNPVNSTV 132 (321)
T ss_pred HHHhCCCCEEEECCCCCC--CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHH
Confidence 356789999999998642 111123222 122 22345666666 655555554 88988754
No 33
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=46.48 E-value=11 Score=34.99 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=31.9
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHH----HHHHHhh--CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPS----VITNVCE--AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~----li~~l~~--~~~vVvVl~~g~P~~l~~~ 93 (194)
...++||+||+..|... ..| +|.+ |-..-.+ +.+++.+ +++.++++. +||+++.-+
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~d--Ll~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~t~ 234 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERAD--LLDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTNAL 234 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHHHH
Confidence 45789999999988632 112 3332 1122222 3444544 345666555 899988654
No 34
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=44.32 E-value=12 Score=34.08 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=31.5
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHHHH----HHHhh-C-CCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPSVI----TNVCE-A-VKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~li----~~l~~-~-~~vVvVl~~g~P~~l~~~ 93 (194)
..++++|+||+..|... ..| +|.+ +-..-.+++ +++.+ . +..++++. +||+++.-+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~d--ll~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~t~ 178 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERAD--LLDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTNAL 178 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHHHH
Confidence 45789999999988632 111 3322 222222333 44444 3 45555555 899987654
No 35
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=43.04 E-value=22 Score=30.62 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=32.2
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCC---hHHHHHHHhh-CCCEEEEEecCcceeccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDP---DPSVITNVCE-AVKCVVIIISGRPIVIEP 92 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~---q~~li~~l~~-~~~vVvVl~~g~P~~l~~ 92 (194)
..+++||+||+++|.... ...+|.+ .++.+ -+++++++.+ +.+-++++. +||.++.-
T Consensus 62 ~~l~dADiVIit~g~p~~--~~~~r~e-~~~~n~~i~~~i~~~i~~~~p~~~iIv~-sNP~di~t 122 (300)
T cd01339 62 EDIAGSDVVVITAGIPRK--PGMSRDD-LLGTNAKIVKEVAENIKKYAPNAIVIVV-TNPLDVMT 122 (300)
T ss_pred HHhCCCCEEEEecCCCCC--cCCCHHH-HHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHH
Confidence 357899999999986431 1112221 01111 1234555555 666666666 79998754
No 36
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=42.75 E-value=48 Score=29.20 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=31.8
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCC-----C----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD-----P----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~-----~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||++.|... .. .+.+++++. . -+++.+++.+ +.+-++++. .||.++.-+
T Consensus 70 ~~l~~aDiVI~tag~~~---~~-~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~-sNP~di~t~ 136 (321)
T PTZ00082 70 EDIAGSDVVIVTAGLTK---RP-GKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVI-TNPLDVMVK 136 (321)
T ss_pred HHhCCCCEEEECCCCCC---CC-CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHH
Confidence 45789999999987532 11 111222221 1 2234455555 666666655 799976543
No 37
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=42.66 E-value=23 Score=25.42 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=26.2
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~vVvVl~ 83 (194)
..+.+|++|+++-.. + .+.....++++.+..++|+++|++
T Consensus 76 ~~~~~d~ii~vv~~~----------~-~~~~~~~~~~~~l~~~~~~i~v~N 115 (116)
T PF01926_consen 76 QISKSDLIIYVVDAS----------N-PITEDDKNILRELKNKKPIILVLN 115 (116)
T ss_dssp HHCTESEEEEEEETT----------S-HSHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHCCEEEEEEECC----------C-CCCHHHHHHHHHHhcCCCEEEEEc
Confidence 347889999988421 1 112344567788865788888875
No 38
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=41.47 E-value=25 Score=32.99 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=47.5
Q ss_pred CChHHHHHHHhh-CCCEEEEEecCcceeccccc------c--ccceeEEcc-CCCch--HHHHHHHHcCCCCCCCCccee
Q 045895 63 DPDPSVITNVCE-AVKCVVIIISGRPIVIEPYI------S--SVDALVAAW-LPGTE--GQGVTDVLFGDYGFSGKLPRS 130 (194)
Q Consensus 63 ~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~------~--~~~Ail~a~-~pG~~--g~AlAdvL~G~~nPsGkLPvT 130 (194)
.++++.|++|.+ +||.|+++++.+|+.-.-.. + +++.+-+.. .-.++ .+-+-++|+- =|=-.+-+.
T Consensus 167 eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyE--FPV~Ei~~~ 244 (492)
T PF09547_consen 167 EAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYE--FPVSEININ 244 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhc--CCceEEEee
Confidence 466778999999 99999999999999764321 1 455554443 22333 5667777775 244444455
Q ss_pred ecCCCCCCC
Q 045895 131 WFKTVDQLP 139 (194)
Q Consensus 131 ~p~~~~~~p 139 (194)
+|+=.+-++
T Consensus 245 lP~Wve~L~ 253 (492)
T PF09547_consen 245 LPKWVEMLE 253 (492)
T ss_pred cchHHhhcC
Confidence 555444444
No 39
>PTZ00117 malate dehydrogenase; Provisional
Probab=40.96 E-value=17 Score=31.99 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=32.7
Q ss_pred hcCCCCEEEEEecCCCcccccC-CCCCCCCCC---ChHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAG-DSMTLTMLD---PDPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~---~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+++||+||++.|... ..| +|.++ ++. --+++.+++.+ +.+-++++. .||.++.-+
T Consensus 70 ~l~~ADiVVitag~~~---~~g~~r~dl-l~~n~~i~~~i~~~i~~~~p~a~vivv-sNP~di~t~ 130 (319)
T PTZ00117 70 DIKDSDVVVITAGVQR---KEEMTREDL-LTINGKIMKSVAESVKKYCPNAFVICV-TNPLDCMVK 130 (319)
T ss_pred HhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCeEEEEe-cChHHHHHH
Confidence 5689999999997532 111 23221 111 12245555666 667766666 899977543
No 40
>PRK13556 azoreductase; Provisional
Probab=40.68 E-value=43 Score=27.21 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=29.5
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-----------------CCCEEEEEecCcce
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-----------------AVKCVVIIISGRPI 88 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-----------------~~~vVvVl~~g~P~ 88 (194)
...++||.+|++.= .-++++|..=+.+|+.+.. ++|++++..+|+++
T Consensus 85 ~~l~~AD~iVi~~P----------~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~ 148 (208)
T PRK13556 85 NQFLEADKVVFAFP----------LWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVY 148 (208)
T ss_pred HHHHHCCEEEEecc----------ccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCC
Confidence 34678999999872 2356666666666666542 35666666666654
No 41
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=40.58 E-value=42 Score=30.37 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=23.6
Q ss_pred HHHHhhcCCCcEEEEecCCC----------hhhhhcCCCCEEEEEecCC
Q 045895 9 GAIRSAVDSSTEVVYRDNPD----------SDFVKSNNFDYAIVAVGEA 47 (194)
Q Consensus 9 ~~l~~~~~~~~~v~~~~~~~----------~~~~~a~~aD~vIv~vg~~ 47 (194)
-||++.+.++.++..-+||. .+...+++-|++|...|+.
T Consensus 39 ~Glr~lLp~~I~lisGPGCPVCVtp~~~ID~ai~LA~~~~vil~TfGDm 87 (355)
T PF01924_consen 39 YGLRSLLPENIELISGPGCPVCVTPQGDIDAAIELAKRPGVILATFGDM 87 (355)
T ss_dssp TTHHHHS-TTEEEEE-S--TTTTS-HHHHHHHHHHHTT--EEEEE-TTG
T ss_pred cCHHhhCCCCcEEecCCCCccEECcHHHHHHHHHHhCCCCeEEEeCccc
Confidence 57888888777777777874 2455677889999999863
No 42
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.57 E-value=18 Score=31.60 Aligned_cols=57 Identities=12% Similarity=0.369 Sum_probs=32.6
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||++|++.|.... +. .+|. ++-..-. ++++++.+ +.+.++++. .+|.++.-+
T Consensus 63 ~~l~~aDiViita~~~~~-~~-~~r~--dl~~~n~~i~~~~~~~l~~~~~~giiiv~-tNP~d~~~~ 124 (308)
T cd05292 63 ADCKGADVVVITAGANQK-PG-ETRL--DLLKRNVAIFKEIIPQILKYAPDAILLVV-TNPVDVLTY 124 (308)
T ss_pred HHhCCCCEEEEccCCCCC-CC-CCHH--HHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHH
Confidence 347899999999986431 11 1232 2222222 34455555 566666666 789987544
No 43
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=40.42 E-value=13 Score=31.38 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=31.7
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceeccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVIEP 92 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l~~ 92 (194)
.++++||.||+..|.... +.. +|.+ +-.... ++.+++.+ +++.++++. ++|.++.-
T Consensus 66 ~~~~~aDiVv~t~~~~~~-~g~-~r~~--~~~~n~~i~~~i~~~i~~~~p~a~~i~~-tNP~d~~t 126 (263)
T cd00650 66 EAFKDADVVIITAGVGRK-PGM-GRLD--LLKRNVPIVKEIGDNIEKYSPDAWIIVV-SNPVDIIT 126 (263)
T ss_pred HHhCCCCEEEECCCCCCC-cCC-CHHH--HHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHH
Confidence 456899999999876431 111 1211 111122 34455555 667776666 89997753
No 44
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=39.83 E-value=78 Score=24.12 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=10.7
Q ss_pred hhcCCCCEEEEEec
Q 045895 32 VKSNNFDYAIVAVG 45 (194)
Q Consensus 32 ~~a~~aD~vIv~vg 45 (194)
.+++++|+++.++-
T Consensus 4 ~~l~~aD~il~VvD 17 (157)
T cd01858 4 KVIDSSDVVIQVLD 17 (157)
T ss_pred HhhhhCCEEEEEEE
Confidence 35678999988883
No 45
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=38.43 E-value=29 Score=27.51 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=25.8
Q ss_pred CCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 35 NNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 35 ~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
.+.|++|+++-. .++ .....|+.++.+ +.|+|++++
T Consensus 77 ~~~D~ii~VvDa----------~~l---~r~l~l~~ql~e~g~P~vvvlN 113 (156)
T PF02421_consen 77 EKPDLIIVVVDA----------TNL---ERNLYLTLQLLELGIPVVVVLN 113 (156)
T ss_dssp TSSSEEEEEEEG----------GGH---HHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCCEEEEECCC----------CCH---HHHHHHHHHHHHcCCCEEEEEe
Confidence 678999999842 221 233457777877 999999998
No 46
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=38.05 E-value=42 Score=25.51 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=22.4
Q ss_pred CCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCCEEEEE
Q 045895 35 NNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVVII 82 (194)
Q Consensus 35 ~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~vVvVl 82 (194)
+..|+||+++|.+. . ....+.+++++.+..+.+++++.
T Consensus 49 ~~~d~vvi~lGtNd-------~---~~~~nl~~ii~~~~~~~~ivlv~ 86 (150)
T cd01840 49 KLRKTVVIGLGTNG-------P---FTKDQLDELLDALGPDRQVYLVN 86 (150)
T ss_pred CCCCeEEEEecCCC-------C---CCHHHHHHHHHHcCCCCEEEEEE
Confidence 35799999999753 1 12334445666664345555543
No 47
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=36.96 E-value=58 Score=22.00 Aligned_cols=25 Identities=8% Similarity=0.309 Sum_probs=20.2
Q ss_pred ChHHHHHHHhh-CCCEEEEEecCcce
Q 045895 64 PDPSVITNVCE-AVKCVVIIISGRPI 88 (194)
Q Consensus 64 ~q~~li~~l~~-~~~vVvVl~~g~P~ 88 (194)
-|+.+++++.+ +.||.+.+.+|-.+
T Consensus 3 lQd~fln~~r~~~~~Vti~L~nG~~l 28 (61)
T TIGR02383 3 LQDQFLNTLRKERIPVTVFLVNGVQL 28 (61)
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCcEE
Confidence 37889999988 78998888877554
No 48
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=36.95 E-value=38 Score=31.70 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=29.4
Q ss_pred hhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCCEEEEEe
Q 045895 30 DFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVVIII 83 (194)
Q Consensus 30 ~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~vVvVl~ 83 (194)
+..++++||.|++++-.+. .++....+++..+..++|+++|++
T Consensus 290 s~~~i~~ADlvL~v~D~~~-----------~~~~~d~~~~~~~~~~~~~i~v~N 332 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQ-----------PLDKEDLALIELLPKKKPIIVVLN 332 (454)
T ss_pred HHHHHHhCCEEEEEEeCCC-----------CCchhhHHHHHhcccCCCEEEEEe
Confidence 3456889999999994321 145555567774444789999987
No 49
>PLN00106 malate dehydrogenase
Probab=36.43 E-value=31 Score=30.63 Aligned_cols=84 Identities=13% Similarity=0.037 Sum_probs=43.9
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCCC---hHHHHHHHhh-CCCEEEEEecCccee-----ccccc------c
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDP---DPSVITNVCE-AVKCVVIIISGRPIV-----IEPYI------S 95 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~---q~~li~~l~~-~~~vVvVl~~g~P~~-----l~~~~------~ 95 (194)
...++++|+||+..|... ....+|.++ ++.+ -+++++++.+ +.+-++++. .||.+ +.... +
T Consensus 81 ~~~l~~aDiVVitAG~~~--~~g~~R~dl-l~~N~~i~~~i~~~i~~~~p~aivivv-SNPvD~~~~i~t~~~~~~s~~p 156 (323)
T PLN00106 81 GDALKGADLVIIPAGVPR--KPGMTRDDL-FNINAGIVKTLCEAVAKHCPNALVNII-SNPVNSTVPIAAEVLKKAGVYD 156 (323)
T ss_pred HHHcCCCCEEEEeCCCCC--CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCeEEEEe-CCCccccHHHHHHHHHHcCCCC
Confidence 356889999999988643 111123221 1111 2234556666 666666655 99997 33211 1
Q ss_pred ccceeEEccCCCch-HHHHHHHHc
Q 045895 96 SVDALVAAWLPGTE-GQGVTDVLF 118 (194)
Q Consensus 96 ~~~Ail~a~~pG~~-g~AlAdvL~ 118 (194)
.-..+=.+...... ...+|+.+-
T Consensus 157 ~~~viG~~~LDs~Rl~~~lA~~lg 180 (323)
T PLN00106 157 PKKLFGVTTLDVVRANTFVAEKKG 180 (323)
T ss_pred cceEEEEecchHHHHHHHHHHHhC
Confidence 12222233444444 667776653
No 50
>PRK00170 azoreductase; Reviewed
Probab=36.37 E-value=47 Score=26.42 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=27.8
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-----------------hCCCEEEEEecCcc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-----------------EAVKCVVIIISGRP 87 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-----------------~~~~vVvVl~~g~P 87 (194)
.+.++||.+|++.=. -+.++|..-+.+|+.+. ++++++++..+|++
T Consensus 82 ~~i~~AD~iV~~sP~----------y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~ 144 (201)
T PRK00170 82 EEFLAADKIVIAAPM----------YNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGI 144 (201)
T ss_pred HHHHHCCEEEEeecc----------cccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCC
Confidence 346789999998722 24555555555666653 24566666655654
No 51
>PRK06223 malate dehydrogenase; Reviewed
Probab=34.53 E-value=30 Score=29.72 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=31.3
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||+++|.... +. .+|.+ +-.... ++++++.+ +.+-++++. .||.++.-+
T Consensus 66 ~~~~~aDiVii~~~~p~~-~~-~~r~~--~~~~n~~i~~~i~~~i~~~~~~~~viv~-tNP~d~~~~ 127 (307)
T PRK06223 66 EDIAGSDVVVITAGVPRK-PG-MSRDD--LLGINAKIMKDVAEGIKKYAPDAIVIVV-TNPVDAMTY 127 (307)
T ss_pred HHHCCCCEEEECCCCCCC-cC-CCHHH--HHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHH
Confidence 346899999999985431 11 12211 111222 34444555 556566555 899987644
No 52
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=34.29 E-value=52 Score=25.88 Aligned_cols=46 Identities=9% Similarity=-0.050 Sum_probs=28.3
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh----hCCCEEEEEecCcc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC----EAVKCVVIIISGRP 87 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~----~~~~vVvVl~~g~P 87 (194)
.+.++||.+|++.=+ -+..+|+.=+.+|+.+. ++||++++..+|++
T Consensus 64 ~~i~~AD~iIi~tP~----------Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~~ 113 (174)
T TIGR03566 64 QAIESADLLVVGSPV----------YRGSYTGLFKHLFDLVDPNALIGKPVLLAATGGSE 113 (174)
T ss_pred HHHHHCCEEEEECCc----------CcCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCCc
Confidence 456789999987632 13445555555666553 26787777665543
No 53
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=33.56 E-value=45 Score=22.32 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=15.4
Q ss_pred CChHHHHHHHhh---CCCEEEEEe
Q 045895 63 DPDPSVITNVCE---AVKCVVIII 83 (194)
Q Consensus 63 ~~q~~li~~l~~---~~~vVvVl~ 83 (194)
..|.+|.+.+.. ++|+++|++
T Consensus 32 e~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 32 EEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 468889888876 689988875
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=33.33 E-value=83 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=26.7
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
..++.+|.+|+++-... ++.....+.++.+.. +.|+|++++
T Consensus 89 ~~~~~~D~ailvVda~~-----------g~~~~~~~~l~~~~~~~~p~ivvlN 130 (188)
T PF00009_consen 89 RGLRQADIAILVVDAND-----------GIQPQTEEHLKILRELGIPIIVVLN 130 (188)
T ss_dssp HHHTTSSEEEEEEETTT-----------BSTHHHHHHHHHHHHTT-SEEEEEE
T ss_pred ceecccccceeeeeccc-----------ccccccccccccccccccceEEeee
Confidence 44688999999994321 123344556777766 889888876
No 55
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=31.61 E-value=97 Score=25.14 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=30.0
Q ss_pred CcEEEEecCCCh-hhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-hCCCEEEEE
Q 045895 18 STEVVYRDNPDS-DFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-EAVKCVVII 82 (194)
Q Consensus 18 ~~~v~~~~~~~~-~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-~~~~vVvVl 82 (194)
+.+|.+....+. ....++++|++|+..... + .++.+|++-|++.. +|+++|.+-
T Consensus 33 ~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~-------~----~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 33 GFEVTVTEDPDDLTPENLKGYDVVVFYNTGG-------D----ELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp CEEEEECCSGGCTSHHCHCT-SEEEEE-SSC-------C----GS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred CEEEEEEeCcccCChhHhcCCCEEEEECCCC-------C----cCCHHHHHHHHHHHHcCCCEEEEc
Confidence 456776544221 124578999999876420 1 15777777665554 488888765
No 56
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=30.16 E-value=1.3e+02 Score=22.73 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=21.9
Q ss_pred cCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 34 SNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 34 a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
.+++|++|+++-... . . ...+.++.+.+.. ++|+|+|++
T Consensus 10 ~~~aD~vl~V~D~~~---~--~------~~~~~~l~~~~~~~~~p~iiv~N 49 (156)
T cd01859 10 IKESDVVLEVLDARD---P--E------LTRSRKLERYVLELGKKLLIVLN 49 (156)
T ss_pred HhhCCEEEEEeeCCC---C--c------ccCCHHHHHHHHhCCCcEEEEEE
Confidence 456899998884211 0 0 1112345444444 788888876
No 57
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.12 E-value=79 Score=25.04 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=11.5
Q ss_pred HHHHHhh-CCCEEEEEecCcceec
Q 045895 68 VITNVCE-AVKCVVIIISGRPIVI 90 (194)
Q Consensus 68 li~~l~~-~~~vVvVl~~g~P~~l 90 (194)
+++.+.+ +..+|+|.+ |.|-.=
T Consensus 91 i~~~I~~~~pdiv~vgl-G~PkQE 113 (171)
T cd06533 91 IIERINASGADILFVGL-GAPKQE 113 (171)
T ss_pred HHHHHHHcCCCEEEEEC-CCCHHH
Confidence 5566655 444444444 666543
No 58
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=29.97 E-value=2.5e+02 Score=22.15 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCCcEEEEecCCChhhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCCEEEEEecCc
Q 045895 7 ILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVVIIISGR 86 (194)
Q Consensus 7 ~~~~l~~~~~~~~~v~~~~~~~~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~vVvVl~~g~ 86 (194)
+.++|.+.++. ..+........ .+.++|+++++.+- |+. ..+..-+++|+.+. +++|.+....|.
T Consensus 14 vA~aI~~~l~~-~~~~~~~~~~~---~~~~yD~i~lG~w~--------d~G--~~d~~~~~fl~~l~-~KkV~lF~T~G~ 78 (160)
T PF12641_consen 14 VAEAIAEALGA-KDIVSVEEPPE---DLEDYDLIFLGFWI--------DKG--TPDKDMKEFLKKLK-GKKVALFGTAGA 78 (160)
T ss_pred HHHHHHHHCCC-ceeEecccccc---CCCCCCEEEEEcCc--------cCC--CCCHHHHHHHHHcc-CCeEEEEEecCC
Confidence 56788888765 23333222211 16789999998764 222 23444556777753 567766655554
Q ss_pred c
Q 045895 87 P 87 (194)
Q Consensus 87 P 87 (194)
+
T Consensus 79 ~ 79 (160)
T PF12641_consen 79 G 79 (160)
T ss_pred C
Confidence 3
No 59
>PRK00395 hfq RNA-binding protein Hfq; Provisional
Probab=28.77 E-value=89 Score=22.22 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=20.3
Q ss_pred ChHHHHHHHhh-CCCEEEEEecCcce
Q 045895 64 PDPSVITNVCE-AVKCVVIIISGRPI 88 (194)
Q Consensus 64 ~q~~li~~l~~-~~~vVvVl~~g~P~ 88 (194)
-|+.++..+.+ +.||.+.+.+|-.+
T Consensus 7 lQd~fLn~lr~~~~~VtifL~NG~~l 32 (79)
T PRK00395 7 LQDPFLNALRKERVPVTIYLVNGIKL 32 (79)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCcEE
Confidence 48889999988 78998888877654
No 60
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.99 E-value=1.4e+02 Score=21.22 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=24.5
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh--CCCEEEEE
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE--AVKCVVII 82 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~--~~~vVvVl 82 (194)
...+++|+||+.++-.+ ..--..+++.++ ++|++.+-
T Consensus 44 ~~i~~aD~VIv~t~~vs--------------H~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVS--------------HNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEeCCcC--------------hHHHHHHHHHHHHcCCcEEEEC
Confidence 45789999999986432 222335667766 67887764
No 61
>PRK00089 era GTPase Era; Reviewed
Probab=27.92 E-value=1.4e+02 Score=25.29 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=26.0
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
.+.++|++++++... + .+......+++.+.. +.|+++|++
T Consensus 81 ~~~~~D~il~vvd~~----------~-~~~~~~~~i~~~l~~~~~pvilVlN 121 (292)
T PRK00089 81 SLKDVDLVLFVVDAD----------E-KIGPGDEFILEKLKKVKTPVILVLN 121 (292)
T ss_pred HHhcCCEEEEEEeCC----------C-CCChhHHHHHHHHhhcCCCEEEEEE
Confidence 457899999988431 1 223344556666666 679998876
No 62
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=27.79 E-value=1.4e+02 Score=21.71 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=24.6
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
..+++|++|+++.... .....+.++++.+.. +.|+|+|++
T Consensus 73 ~~~~~d~ii~v~d~~~-----------~~~~~~~~~~~~~~~~~~piiiv~n 113 (157)
T cd01894 73 AIEEADVILFVVDGRE-----------GLTPADEEIAKYLRKSKKPVILVVN 113 (157)
T ss_pred HHHhCCEEEEEEeccc-----------cCCccHHHHHHHHHhcCCCEEEEEE
Confidence 3567899998884311 112233456666655 788888876
No 63
>PTZ00346 histone deacetylase; Provisional
Probab=27.33 E-value=1.7e+02 Score=27.28 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCCEEEEEecCCCcccccCCCCCCCCCCChH-HHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCchHHHH
Q 045895 36 NFDYAIVAVGEAPYAETAGDSMTLTMLDPDP-SVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGV 113 (194)
Q Consensus 36 ~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~-~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~g~Al 113 (194)
+-|+||+..|-+..... ....+.|..+-- ++++.+.+ +.|+++++ ++-|.+..+. -+| .++
T Consensus 268 ~PdlIvvsaG~Da~~~D--pLg~l~LT~~g~~~~~~~l~~~~~plv~vl--eGGY~~~~la-------r~w------~~~ 330 (429)
T PTZ00346 268 SPDAIVLQCGADSLAGD--RLGLLNLSSFGHGQCVQAVRDLGIPMLALG--GGGYTIRNVA-------KLW------AYE 330 (429)
T ss_pred CCCEEEEECCccCCCCC--CCCCceeCHHHHHHHHHHHHhcCCCEEEEe--CCcCCccHHH-------HHH------HHH
Confidence 45999999997653222 345566665433 45666766 77887765 5557664322 334 556
Q ss_pred HHHHcCCCCCCC-Cccee
Q 045895 114 TDVLFGDYGFSG-KLPRS 130 (194)
Q Consensus 114 AdvL~G~~nPsG-kLPvT 130 (194)
..+|.|+--|.. .||..
T Consensus 331 t~~l~g~~i~~~~~lp~~ 348 (429)
T PTZ00346 331 TSILTGHPLPPNTVLPVA 348 (429)
T ss_pred HHHHcCCCCCCCCCCCCC
Confidence 677888744433 46643
No 64
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=27.05 E-value=22 Score=29.29 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHhhCCCEEEEEecCcceeccccccccceeEEccCCC
Q 045895 61 MLDPDPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPG 107 (194)
Q Consensus 61 l~~~q~~li~~l~~~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG 107 (194)
.++.-.++|++|++..+..|+++|||+..-.........+.++...|
T Consensus 20 ~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i~l~gehG 66 (235)
T PF02358_consen 20 PPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNIGLAGEHG 66 (235)
T ss_dssp --HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-EEEEGGG
T ss_pred CCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCceEEEEee
Confidence 34455578888988555555566799887643433445554444444
No 65
>PRK13555 azoreductase; Provisional
Probab=26.86 E-value=84 Score=25.90 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=9.8
Q ss_pred hcCCCCEEEEEe
Q 045895 33 KSNNFDYAIVAV 44 (194)
Q Consensus 33 ~a~~aD~vIv~v 44 (194)
..+.||.+|++.
T Consensus 86 ~~~~AD~lvi~~ 97 (208)
T PRK13555 86 QFLEADKVVFAF 97 (208)
T ss_pred HHHHcCEEEEEc
Confidence 457899999987
No 66
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=26.03 E-value=2e+02 Score=23.35 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=53.1
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHH-HHhh-CCC--EEEEEecCcceecc-ccccccceeEEccCC
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVIT-NVCE-AVK--CVVIIISGRPIVIE-PYISSVDALVAAWLP 106 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~-~l~~-~~~--vVvVl~~g~P~~l~-~~~~~~~Ail~a~~p 106 (194)
.+++++|-+||++|......+ -++.+. .+++..+|+ .+.. +.+ +.++-. ..+.-+ -|...+...+-.|..
T Consensus 25 ~al~~vDeliI~iGSa~~~~t--~~nPfT-agER~~mi~~~L~~~~~~~r~~~~~v--~d~~~n~i~v~~v~~~~p~~~~ 99 (172)
T COG1056 25 RALSKVDELIIVIGSAQESHT--LKNPFT-AGERIPMIRDRLREAGLDLRVYLRPV--FDIEYNDIWVAYVEDLVPPFDV 99 (172)
T ss_pred HHHHhCCEEEEEEccCccccc--ccCCCC-ccchhHHHHHHHHhcCCCceEEEEec--CccccchhhHHHHhhcCCCccc
Confidence 356789999999997542111 111111 234445666 4554 433 233222 112221 111223333333333
Q ss_pred CchHHHHHHHHcCCCCCCCCcceeecCCC
Q 045895 107 GTEGQGVTDVLFGDYGFSGKLPRSWFKTV 135 (194)
Q Consensus 107 G~~g~AlAdvL~G~~nPsGkLPvT~p~~~ 135 (194)
+-.++..+..||.+..-+.+=|-.++++.
T Consensus 100 ~~~~n~~v~~lf~~~~~~~~~p~~f~~~e 128 (172)
T COG1056 100 VYTWNPWVARLFHEKGEKVYYPPMFPRWE 128 (172)
T ss_pred cCCCCHHHHHHHhhcCceeecCCcccccc
Confidence 33368888899999888888887777654
No 67
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=26.00 E-value=1.3e+02 Score=25.06 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=40.8
Q ss_pred CCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCc
Q 045895 35 NNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGT 108 (194)
Q Consensus 35 ~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~ 108 (194)
+++|++||.++-.. |. .....+.|+++-+++.. +.-+|+ .+.|-.+.+++ ..+.-+.+|.-|.
T Consensus 182 ~~~D~vIv~~HwG~--e~-----~~~p~~~q~~~a~~lidaGaDiIi---G~HpHv~q~~E-~y~~~~I~YSLGN 245 (250)
T PF09587_consen 182 KKADVVIVSLHWGI--EY-----ENYPTPEQRELARALIDAGADIII---GHHPHVIQPVE-IYKGKPIFYSLGN 245 (250)
T ss_pred cCCCEEEEEeccCC--CC-----CCCCCHHHHHHHHHHHHcCCCEEE---eCCCCcccceE-EECCEEEEEeCcc
Confidence 56999999997421 22 23346788999999887 655554 46688887664 3344455565554
No 68
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=25.86 E-value=2e+02 Score=21.68 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=28.3
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh---CCCEEEEEecCc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE---AVKCVVIIISGR 86 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~---~~~vVvVl~~g~ 86 (194)
..+.++|.||++.+-. .-.++..=.++|++..+ +++++++..++.
T Consensus 39 ~~~~~yD~vi~gspiy----------~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 39 PDLSDYDAVIFGSPIY----------AGRIPGEMREFIKKNKDNLKNKKVALFSVGGS 86 (143)
T ss_pred cccccCCEEEEEEEEE----------CCcCCHHHHHHHHHHHHHHcCCcEEEEEEeCC
Confidence 3567899999876431 12244545678887653 678877766444
No 69
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.43 E-value=77 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCCEEEEEecCCCcccccCCCCCCCCCCC---hHHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 35 NNFDYAIVAVGEAPYAETAGDSMTLTMLDP---DPSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 35 ~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~---q~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
..+|++++-+|.... ..-|-.+.+.|.+. .+++.++..+ ++.+|++++ |+|+.-.
T Consensus 169 AGaDiiv~H~GlT~g-G~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h-GGPI~~p 227 (268)
T PF09370_consen 169 AGADIIVAHMGLTTG-GSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH-GGPIATP 227 (268)
T ss_dssp HT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE-CTTB-SH
T ss_pred cCCCEEEecCCccCC-CCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe-CCCCCCH
Confidence 479999999986431 11122222333222 1223333444 677777777 8898653
No 70
>PRK09739 hypothetical protein; Provisional
Probab=25.01 E-value=81 Score=25.33 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=29.0
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh------------hCCCEEEEEecCcce
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC------------EAVKCVVIIISGRPI 88 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~------------~~~~vVvVl~~g~P~ 88 (194)
.++++||.+|++.= .-+.++|..=+.+|+.+. .+++++++..+|++.
T Consensus 75 ~~l~~AD~iV~~~P----------~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 75 SELLEHDALVFVFP----------LWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred HHHHhCCEEEEECc----------hhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 45678999999762 124555666566666653 245666666556554
No 71
>PRK15494 era GTPase Era; Provisional
Probab=24.96 E-value=1.5e+02 Score=26.20 Aligned_cols=40 Identities=5% Similarity=0.158 Sum_probs=24.1
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
.++++|++|+++-.. . .+......+++.+.. +.|+|+|++
T Consensus 128 ~l~~aDvil~VvD~~---------~--s~~~~~~~il~~l~~~~~p~IlViN 168 (339)
T PRK15494 128 SLHSADLVLLIIDSL---------K--SFDDITHNILDKLRSLNIVPIFLLN 168 (339)
T ss_pred HhhhCCEEEEEEECC---------C--CCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 357899999988321 1 122233456777766 667776554
No 72
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=24.52 E-value=63 Score=28.66 Aligned_cols=55 Identities=18% Similarity=0.466 Sum_probs=33.7
Q ss_pred cCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHH----Hhh-CCCEEEEEecCcceecccc
Q 045895 34 SNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITN----VCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 34 a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~----l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
-+.+++||+..|..+. + ++..|.|-+.-.++++. +.+ .+..++++. .+|+++.-+
T Consensus 86 sa~S~lvIiTAGarq~-~---gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvv-SNPVDilTY 145 (332)
T KOG1495|consen 86 SANSKLVIITAGARQS-E---GESRLDLVQRNVDIFKAIIPALVKYSPDCILLVV-SNPVDILTY 145 (332)
T ss_pred cCCCcEEEEecCCCCC-C---CcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe-cCchHHHHH
Confidence 4578999999997652 1 22334444333344444 445 567777776 889988544
No 73
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=24.40 E-value=1.8e+02 Score=24.24 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=25.5
Q ss_pred cccc-eeEEccCCCch-HHHHHHHHcCCCCCCCCcceeecC
Q 045895 95 SSVD-ALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFK 133 (194)
Q Consensus 95 ~~~~-Ail~a~~pG~~-g~AlAdvL~G~~nPsGkLPvT~p~ 133 (194)
.+++ .|+++. |.+ .+++..+|.|..+ -.+|.++-.
T Consensus 194 ~~a~~vi~~a~--G~~K~~ai~~al~~~~~--~~~Pa~~l~ 230 (261)
T PRK00443 194 LDAKEIMLLAP--GHNKAEAVKAAVEGPVN--HMWPASILQ 230 (261)
T ss_pred HhcCeEEEEec--ChHHHHHHHHHHhCCCC--CCcchHHHh
Confidence 4555 555665 999 9999999998654 477877654
No 74
>PRK01355 azoreductase; Reviewed
Probab=24.13 E-value=1e+02 Score=24.82 Aligned_cols=31 Identities=3% Similarity=0.101 Sum_probs=19.9
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHH
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNV 72 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l 72 (194)
.+..+||.+|++.=. -++++|..-+.+|+.+
T Consensus 73 ~~l~~AD~iV~~sP~----------y~~~ipa~LK~~iDrv 103 (199)
T PRK01355 73 NQLKSVDKVVISCPM----------TNFNVPATLKNYLDHI 103 (199)
T ss_pred HHHHhCCEEEEEcCc----------cccCChHHHHHHHHHH
Confidence 456789999998621 2455566555566665
No 75
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=23.99 E-value=2.1e+02 Score=23.59 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCc
Q 045895 35 NNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGT 108 (194)
Q Consensus 35 ~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~ 108 (194)
+++|+||+..|-.. |. + -...+.|+++.+++.. +.-+|+ ++.|-.+.++. ..+.-+.+|.-|.
T Consensus 171 ~~~D~vIv~~H~G~--e~--~---~~p~~~~~~~A~~l~~~G~DvIi---G~H~H~~~~~e-~~~~~~I~YslGN 234 (239)
T smart00854 171 KKADVVIVSLHWGV--EY--Q---YEPTDEQRELAHALIDAGADVVI---GHHPHVLQPIE-IYKGKLIAYSLGN 234 (239)
T ss_pred ccCCEEEEEecCcc--cc--C---CCCCHHHHHHHHHHHHcCCCEEE---cCCCCcCCceE-EECCEEEEEcccc
Confidence 36999999997532 22 1 1224577888888876 644443 57787776553 3334456776664
No 76
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=23.88 E-value=1.3e+02 Score=26.85 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=25.3
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
..+++|++|+++-.. + .+.....++.+.+.+ ++|+++|++
T Consensus 75 ~~~~ad~vl~vvD~~----------~-~~~~~d~~i~~~l~~~~~piilVvN 115 (429)
T TIGR03594 75 AIEEADVILFVVDGR----------E-GLTPEDEEIAKWLRKSGKPVILVAN 115 (429)
T ss_pred HHhhCCEEEEEEeCC----------C-CCCHHHHHHHHHHHHhCCCEEEEEE
Confidence 457899999988321 1 123333445666666 789888876
No 77
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=23.87 E-value=1e+02 Score=25.49 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=18.8
Q ss_pred CCCChHHHHHHHhhCCCEEEEEecCcce
Q 045895 61 MLDPDPSVITNVCEAVKCVVIIISGRPI 88 (194)
Q Consensus 61 l~~~q~~li~~l~~~~~vVvVl~~g~P~ 88 (194)
+++.-.++|++|++..+++|++.|||++
T Consensus 26 ~~~~~~~~L~~L~~~~~~~v~ivSGR~~ 53 (244)
T TIGR00685 26 VSDRLLTILQKLAARPHNAIWIISGRKF 53 (244)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence 3455556788888765666666678865
No 78
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=22.99 E-value=1.8e+02 Score=24.47 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=24.5
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
.++++|++++++-.+. . ...+..+++.+.. +.|+|+|++
T Consensus 76 ~l~~aDvvl~VvD~~~-------~-----~~~~~~i~~~l~~~~~p~ilV~N 115 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQ-------W-----NGDGEFVLTKLQNLKRPVVLTRN 115 (270)
T ss_pred HHhhCCEEEEEEECCC-------C-----CchHHHHHHHHHhcCCCEEEEEE
Confidence 4578999999884211 0 1112445666666 789988876
No 79
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=22.64 E-value=1.8e+02 Score=21.63 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=9.2
Q ss_pred hhcCCCCEEEEEe
Q 045895 32 VKSNNFDYAIVAV 44 (194)
Q Consensus 32 ~~a~~aD~vIv~v 44 (194)
..++++|++++++
T Consensus 7 ~~i~~aD~vl~Vi 19 (141)
T cd01857 7 RVVERSDIVVQIV 19 (141)
T ss_pred HHHhhCCEEEEEE
Confidence 4566788877776
No 80
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=22.26 E-value=4.8e+02 Score=25.60 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=22.1
Q ss_pred cCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 34 SNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 34 a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
|.-.|.||+++..+. ++-+...+-|+-... +.|+|+-++
T Consensus 222 A~vtDIvVLVVAadD-----------GVmpQT~EaIkhAk~A~VpiVvAin 261 (683)
T KOG1145|consen 222 ANVTDIVVLVVAADD-----------GVMPQTLEAIKHAKSANVPIVVAIN 261 (683)
T ss_pred CccccEEEEEEEccC-----------CccHhHHHHHHHHHhcCCCEEEEEe
Confidence 455788888885321 112223344554444 788888776
No 81
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.12 E-value=1.5e+02 Score=23.86 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=17.4
Q ss_pred ChHHHHHHHhh-CCCEEEEEecCcceec
Q 045895 64 PDPSVITNVCE-AVKCVVIIISGRPIVI 90 (194)
Q Consensus 64 ~q~~li~~l~~-~~~vVvVl~~g~P~~l 90 (194)
+++++++.+.+ +..+|+|-+ |.|-.=
T Consensus 88 ~~~~i~~~I~~s~~dil~Vgl-G~PkQE 114 (177)
T TIGR00696 88 ERKAALAKIARSGAGIVFVGL-GCPKQE 114 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEc-CCcHhH
Confidence 34567888877 556666665 888753
No 82
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=22.11 E-value=2.3e+02 Score=20.62 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 35 NNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 35 ~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
+.+|.+|+++... + +.....+++.+.+ ++|+|+|++
T Consensus 73 ~~~d~vi~v~d~~----------~---~~~~~~~~~~~~~~~~~~iiv~N 109 (158)
T cd01879 73 EKPDLIVNVVDAT----------N---LERNLYLTLQLLELGLPVVVALN 109 (158)
T ss_pred CCCcEEEEEeeCC----------c---chhHHHHHHHHHHcCCCEEEEEe
Confidence 4789999888431 1 1112234555555 788888776
No 83
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=21.92 E-value=1.6e+02 Score=26.28 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=43.5
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCC--ChHHHHHH--Hh--------h-CCCEEEEEecCcceecccc--cc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD--PDPSVITN--VC--------E-AVKCVVIIISGRPIVIEPY--IS 95 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~--~q~~li~~--l~--------~-~~~vVvVl~~g~P~~l~~~--~~ 95 (194)
...++++|++||++|+..... .....+... ...++.++ +. + +.++-..++ .+-+.++ + .+
T Consensus 202 l~~~~~ad~alvGIG~~~~~~---~~~~~g~~~~~~~~~l~~~gaVGdi~g~ffD~~G~~~~~~ln-~r~igl~-L~~l~ 276 (321)
T COG2390 202 LDLARSADLALVGIGSLSANS---TLVRSGFIYEEELEALLAKGAVGDILGRFFDANGQPVDTPLN-DRVIGLS-LDDLR 276 (321)
T ss_pred HHHHHhCCEEEEecCCCcccc---hhhhhcCCCHHHHHHHHhCCcceecccceecCCCCCcccccc-CceecCC-HHHHh
Confidence 356789999999999753111 111112122 22222221 10 1 223333332 3333331 2 24
Q ss_pred ccc-eeEEccCCCch-HHHHHHHHcCCC
Q 045895 96 SVD-ALVAAWLPGTE-GQGVTDVLFGDY 121 (194)
Q Consensus 96 ~~~-Ail~a~~pG~~-g~AlAdvL~G~~ 121 (194)
+++ .|..|. |.. .+|+.-.|-|..
T Consensus 277 ~ip~vI~vAg--G~~K~~AI~aaL~gg~ 302 (321)
T COG2390 277 QIPKVIAVAG--GESKAEAILAALRGGY 302 (321)
T ss_pred cCCcEEEEeC--CcccHHHHHHHHhCCC
Confidence 555 666776 778 899999998864
No 84
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=21.72 E-value=48 Score=14.89 Aligned_cols=8 Identities=38% Similarity=1.315 Sum_probs=3.9
Q ss_pred ccCCCccc
Q 045895 149 PLFPFDFG 156 (194)
Q Consensus 149 p~ypFG~G 156 (194)
+.|-||-|
T Consensus 4 ~~Y~FGLG 11 (11)
T PF05953_consen 4 PMYSFGLG 11 (11)
T ss_pred CccccCcC
Confidence 34555543
No 85
>COG1159 Era GTPase [General function prediction only]
Probab=21.26 E-value=2.6e+02 Score=24.76 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=28.2
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
...++++|++++++-.+. + +....+.+++.+.. +.|+|++++
T Consensus 80 ~~sl~dvDlilfvvd~~~--~---------~~~~d~~il~~lk~~~~pvil~iN 122 (298)
T COG1159 80 RSALKDVDLILFVVDADE--G---------WGPGDEFILEQLKKTKTPVILVVN 122 (298)
T ss_pred HHHhccCcEEEEEEeccc--c---------CCccHHHHHHHHhhcCCCeEEEEE
Confidence 456789999999984321 1 12234446677777 679999887
No 86
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=20.70 E-value=1.5e+02 Score=29.08 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=26.6
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
..+.+|++|+++-.. + ++.....++++.+.. ++|+|+|++
T Consensus 351 ~~~~aD~iL~VvDa~----------~-~~~~~d~~i~~~Lr~~~~pvIlV~N 391 (712)
T PRK09518 351 AVSLADAVVFVVDGQ----------V-GLTSTDERIVRMLRRAGKPVVLAVN 391 (712)
T ss_pred HHHhCCEEEEEEECC----------C-CCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 357899999998421 1 123334456666766 789999876
No 87
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=20.10 E-value=1.4e+02 Score=27.35 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=28.9
Q ss_pred EecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEE
Q 045895 43 AVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVI 81 (194)
Q Consensus 43 ~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvV 81 (194)
++|+.......+.|.++.+++.+..+++.+++ +.+|+.|
T Consensus 194 f~G~~~~f~rt~~r~dy~~~p~~pTvld~l~~aG~~V~~V 233 (381)
T TIGR01696 194 FVGEPGNFQRTGNRHDYALKPFAPTVLQKLKDEGHDVISI 233 (381)
T ss_pred cccCCCCeeeCCCcCCCCCCCCCCCHHHHHHHCCCeEEEE
Confidence 44653222334478899999988889999988 7899887
No 88
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=20.09 E-value=1.4e+02 Score=23.43 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.5
Q ss_pred CCCCEEEEEecCCC
Q 045895 35 NNFDYAIVAVGEAP 48 (194)
Q Consensus 35 ~~aD~vIv~vg~~~ 48 (194)
++.|+||+.+|.+-
T Consensus 64 ~~pdlVii~~G~ND 77 (198)
T cd01821 64 KPGDYVLIQFGHND 77 (198)
T ss_pred CCCCEEEEECCCCC
Confidence 37899999999753
No 89
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=20.05 E-value=1.3e+02 Score=26.93 Aligned_cols=53 Identities=9% Similarity=-0.054 Sum_probs=32.0
Q ss_pred hhhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEecCccee
Q 045895 29 SDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIV 89 (194)
Q Consensus 29 ~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~ 89 (194)
+++++.++||+||++-|..- .+ =..+|.+|+- -+++.+ ..|+|.+.+...|..
T Consensus 182 eaveAI~~AD~IviGPgSl~--TS--IlP~Lllp~I----~eaLr~~~ap~i~v~n~~~~~g 235 (323)
T COG0391 182 EAVEAIKEADLIVIGPGSLF--TS--ILPILLLPGI----AEALRETVAPIVYVCNLMTQAG 235 (323)
T ss_pred HHHHHHHhCCEEEEcCCccH--hh--hchhhchhHH----HHHHHhCCCCEEEeccCCCCCC
Confidence 46778899999999877521 11 1234555543 334444 568888776555544
Done!