Query 045895
Match_columns 194
No_of_seqs 214 out of 1338
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3abz_A Beta-glucosidase I; gly 100.0 5.6E-44 1.9E-48 344.6 16.7 138 31-169 568-732 (845)
2 3zyz_A Beta-D-glucoside glucoh 100.0 1.1E-43 3.6E-48 337.7 13.6 189 2-191 390-621 (713)
3 3rrx_A EXO-1,3/1,4-beta-glucan 100.0 5.4E-42 1.8E-46 329.0 15.7 161 2-166 448-619 (822)
4 1x38_A Beta-D-glucan exohydrol 100.0 6.7E-42 2.3E-46 320.2 16.0 159 3-161 443-601 (602)
5 2x41_A Beta-glucosidase; hydro 100.0 1.9E-41 6.4E-46 322.8 8.4 165 2-169 376-610 (721)
6 3bmx_A Uncharacterized lipopro 99.9 2.8E-28 9.5E-33 229.6 9.9 145 4-163 465-640 (642)
7 3sql_A Glycosyl hydrolase fami 74.8 2 6.7E-05 39.5 3.4 54 66-120 466-523 (535)
8 3vku_A L-LDH, L-lactate dehydr 61.2 7.8 0.00027 33.0 4.2 58 32-93 72-133 (326)
9 3ldh_A Lactate dehydrogenase; 60.5 4.3 0.00015 34.8 2.4 55 33-93 86-146 (330)
10 1oju_A MDH, malate dehydrogena 55.9 2.5 8.4E-05 35.6 0.1 58 32-93 65-126 (294)
11 2x0j_A Malate dehydrogenase; o 55.1 2.6 8.9E-05 35.6 0.1 56 32-93 65-126 (294)
12 3nep_X Malate dehydrogenase; h 52.8 3 0.0001 35.5 0.1 56 32-93 65-126 (314)
13 3pqe_A L-LDH, L-lactate dehydr 52.0 3 0.0001 35.6 -0.1 58 32-93 69-130 (326)
14 1eiw_A Hypothetical protein MT 50.6 9.3 0.00032 27.6 2.5 76 32-123 34-110 (111)
15 3gvi_A Malate dehydrogenase; N 50.5 4.8 0.00016 34.3 1.0 56 32-93 71-132 (324)
16 3tl2_A Malate dehydrogenase; c 50.2 3.5 0.00012 35.0 0.1 56 32-93 74-135 (315)
17 4aj2_A L-lactate dehydrogenase 49.4 4.7 0.00016 34.5 0.8 55 33-93 84-144 (331)
18 1ur5_A Malate dehydrogenase; o 46.1 5.5 0.00019 33.4 0.7 57 32-93 66-127 (309)
19 3lcm_A SMU.1420, putative oxid 45.4 14 0.00048 28.5 3.0 46 32-87 69-131 (196)
20 1ez4_A Lactate dehydrogenase; 44.2 8.4 0.00029 32.5 1.6 56 32-93 68-129 (318)
21 1t5b_A Acyl carrier protein ph 44.2 17 0.00058 27.3 3.2 47 32-88 82-145 (201)
22 3hhp_A Malate dehydrogenase; M 42.1 4.5 0.00015 34.3 -0.5 56 32-93 65-126 (312)
23 5mdh_A Malate dehydrogenase; o 41.2 13 0.00043 31.7 2.2 56 32-93 75-137 (333)
24 1x9t_B N-terminl peptide of fi 40.0 9.6 0.00033 20.6 0.8 10 146-155 10-19 (26)
25 2hjr_A Malate dehydrogenase; m 38.2 14 0.00047 31.2 2.0 54 32-91 78-137 (328)
26 4h08_A Putative hydrolase; GDS 38.2 48 0.0016 24.6 5.0 47 34-90 72-124 (200)
27 1mld_A Malate dehydrogenase; o 38.1 10 0.00035 31.8 1.2 54 33-91 65-123 (314)
28 3p7m_A Malate dehydrogenase; p 38.1 7 0.00024 33.1 0.1 56 32-93 69-130 (321)
29 1rtt_A Conserved hypothetical 38.0 55 0.0019 24.5 5.3 46 32-87 68-120 (193)
30 1ldn_A L-lactate dehydrogenase 36.8 14 0.00047 31.0 1.7 56 32-93 70-131 (316)
31 1ega_A Protein (GTP-binding pr 36.8 28 0.00095 28.6 3.6 39 33-83 85-124 (301)
32 2d4a_B Malate dehydrogenase; a 35.0 11 0.00038 31.6 0.8 56 32-93 63-124 (308)
33 3p0r_A Azoreductase; structura 34.5 24 0.00082 27.5 2.7 47 33-89 89-152 (211)
34 1y6j_A L-lactate dehydrogenase 34.4 36 0.0012 28.4 4.0 56 32-93 70-131 (318)
35 2hpv_A FMN-dependent NADH-azor 34.4 23 0.00079 27.0 2.6 46 33-88 91-153 (208)
36 4h7p_A Malate dehydrogenase; s 34.4 6.7 0.00023 33.8 -0.6 55 32-92 96-157 (345)
37 4hs4_A Chromate reductase; tri 34.2 34 0.0011 26.5 3.6 46 32-87 69-121 (199)
38 2ewd_A Lactate dehydrogenase,; 32.3 16 0.00055 30.3 1.5 56 32-91 68-127 (317)
39 2amj_A Modulator of drug activ 32.2 71 0.0024 24.6 5.2 32 31-72 65-96 (204)
40 3d0o_A L-LDH 1, L-lactate dehy 31.7 9.6 0.00033 32.0 -0.1 56 32-93 70-131 (317)
41 1rli_A Trp repressor binding p 31.6 35 0.0012 25.2 3.2 46 32-87 67-127 (184)
42 2xxj_A L-LDH, L-lactate dehydr 31.5 7.6 0.00026 32.6 -0.8 56 32-93 63-124 (310)
43 3r6w_A FMN-dependent NADH-azor 31.4 31 0.0011 26.5 2.9 45 33-87 84-149 (212)
44 3ha2_A NADPH-quinone reductase 31.2 49 0.0017 25.3 4.0 48 31-88 46-105 (177)
45 1jwy_B Dynamin A GTPase domain 30.7 49 0.0017 26.6 4.2 41 33-83 164-206 (315)
46 3fi9_A Malate dehydrogenase; s 30.6 4.9 0.00017 34.6 -2.1 58 32-93 72-134 (343)
47 1smk_A Malate dehydrogenase, g 30.1 16 0.00055 30.7 1.1 56 32-90 72-130 (326)
48 3q9b_A Acetylpolyamine amidohy 29.7 36 0.0012 29.3 3.2 62 36-101 273-336 (341)
49 1t2d_A LDH-P, L-lactate dehydr 29.4 48 0.0016 27.7 3.9 58 32-92 68-133 (322)
50 2v6b_A L-LDH, L-lactate dehydr 29.4 18 0.00063 29.9 1.3 54 32-91 63-122 (304)
51 2zqz_A L-LDH, L-lactate dehydr 28.6 8.3 0.00028 32.7 -1.0 58 32-93 72-133 (326)
52 1a5z_A L-lactate dehydrogenase 28.5 66 0.0023 26.6 4.7 54 33-91 64-122 (319)
53 1d4a_A DT-diaphorase, quinone 28.4 39 0.0013 27.5 3.1 45 33-87 90-151 (273)
54 1pzg_A LDH, lactate dehydrogen 28.4 30 0.001 29.1 2.5 58 33-93 75-140 (331)
55 4dhe_A Probable GTP-binding pr 27.9 59 0.002 24.3 3.9 39 34-83 113-152 (223)
56 1guz_A Malate dehydrogenase; o 27.4 71 0.0024 26.3 4.7 54 33-91 66-124 (310)
57 3ahu_A Protein HFQ; SM-like mo 27.4 54 0.0018 22.2 3.1 26 63-88 10-36 (78)
58 3nhm_A Response regulator; pro 27.3 1.4E+02 0.0047 19.8 7.0 100 8-121 17-124 (133)
59 2z1d_A Hydrogenase expression/ 25.6 40 0.0014 29.5 2.8 39 9-47 48-101 (372)
60 7mdh_A Protein (malate dehydro 25.5 14 0.00049 32.2 -0.1 57 31-93 103-166 (375)
61 1hye_A L-lactate/malate dehydr 25.4 14 0.00049 30.7 -0.1 57 32-93 70-130 (313)
62 2ark_A Flavodoxin; FMN, struct 25.4 78 0.0027 23.6 4.2 45 32-86 48-99 (188)
63 1u1s_A HFQ protein; SM-like ba 25.3 61 0.0021 22.2 3.1 25 64-88 7-32 (82)
64 2a5l_A Trp repressor binding p 25.0 92 0.0032 23.1 4.6 47 31-87 66-120 (200)
65 1hyh_A L-hicdh, L-2-hydroxyiso 24.8 27 0.00091 28.8 1.5 57 32-91 65-128 (309)
66 3t5d_A Septin-7; GTP-binding p 24.6 95 0.0032 24.7 4.8 38 36-83 115-152 (274)
67 3f2v_A General stress protein 24.5 46 0.0016 25.8 2.7 48 31-88 53-113 (192)
68 3kto_A Response regulator rece 24.5 1.6E+02 0.0056 19.7 5.8 59 65-123 67-130 (136)
69 1p2f_A Response regulator; DRR 24.4 2.1E+02 0.0071 21.1 6.6 101 7-121 14-119 (220)
70 3fvw_A Putative NAD(P)H-depend 24.0 65 0.0022 24.5 3.5 32 32-73 63-94 (192)
71 2ylb_A Protein HFQ; RNA-bindin 24.0 73 0.0025 21.2 3.3 26 64-89 9-35 (74)
72 3men_A Acetylpolyamine aminohy 23.4 32 0.0011 29.9 1.8 64 36-103 291-356 (362)
73 3lhi_A Putative 6-phosphogluco 22.6 1.6E+02 0.0054 23.3 5.7 40 95-139 184-225 (232)
74 3k1y_A Oxidoreductase; structu 22.2 40 0.0014 26.1 2.0 45 32-86 81-129 (191)
75 3sb2_A Protein HFQ; SM-like, R 21.7 79 0.0027 21.4 3.1 26 64-89 8-34 (79)
76 2lnd_A De novo designed protei 21.5 28 0.00097 24.1 0.8 29 66-94 41-70 (112)
77 1sqs_A Conserved hypothetical 21.0 47 0.0016 26.1 2.2 45 33-87 76-128 (242)
78 1lld_A L-lactate dehydrogenase 21.0 1.1E+02 0.0038 24.7 4.6 57 33-92 72-131 (319)
79 3tem_A Ribosyldihydronicotinam 20.9 68 0.0023 25.3 3.1 46 33-88 89-151 (228)
80 1kq1_A HFQ, HOST factor for Q 20.8 72 0.0025 21.5 2.8 25 64-88 7-32 (77)
81 2avu_E Flagellar transcription 20.5 37 0.0013 26.9 1.4 21 110-130 40-60 (192)
82 2dyk_A GTP-binding protein; GT 20.3 1.5E+02 0.005 20.4 4.6 40 33-83 76-116 (161)
83 3u7i_A FMN-dependent NADH-azor 20.0 66 0.0023 25.3 2.9 46 33-88 91-154 (223)
No 1
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=100.00 E-value=5.6e-44 Score=344.58 Aligned_cols=138 Identities=28% Similarity=0.475 Sum_probs=127.3
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGT 108 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~ 108 (194)
+++|++||+|||++|+++..|.|| ||.+|.||+.|++||++|++ ++|+|||+++|+|+.| +|.++++|||++|+||+
T Consensus 568 v~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~tVVVl~sG~pv~m-~w~~~v~AIL~aw~pGq 646 (845)
T 3abz_A 568 AELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEF-PWLEDANALVQAWYGGN 646 (845)
T ss_dssp HHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSCEEEEEECSSCCCC-TTGGGCSEEEECCCCCT
T ss_pred HHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCCEEEEEeCCCcccC-cchhccCeEEEcCCCcH
Confidence 355789999999999988777777 99999999999999999999 9999999999999999 78889999999999999
Q ss_pred h-HHHHHHHHcCCCCCCCCcceeecCCCCCCCccC-----------------CCCCC-----CccCCCcccCCCCccccc
Q 045895 109 E-GQGVTDVLFGDYGFSGKLPRSWFKTVDQLPMNV-----------------GDPHY-----DPLFPFDFGLKTESVPSI 165 (194)
Q Consensus 109 ~-g~AlAdvL~G~~nPsGkLPvT~p~~~~~~p~~~-----------------~~~~~-----~p~ypFG~GLsYt~f~~~ 165 (194)
+ |+||||||||++|||||||+|||++.+|+|.++ +|||| +|+||||||||||+|+|+
T Consensus 647 egG~AiAdVLfG~vNPSGkLP~T~p~~~~d~P~~~~~~~~~g~~~y~eg~~vgYR~y~~~~~~plfPFG~GLSYTtF~ys 726 (845)
T 3abz_A 647 ELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELD 726 (845)
T ss_dssp THHHHHHHHHTTSSCCCCCCSSCBCSSGGGSTTTTSCSCBTTEEECTTTTCCTHHHHHHHTCCCSBCTTCCBCSSCEEEE
T ss_pred HHHHHHHHHhcCCcCCCCCCceeeeCchhhCCccccCCCCCCceeccCCccCCCcchhcCCCceeecccCCCcceeEEEe
Confidence 9 999999999999999999999999999999753 35666 599999999999999999
Q ss_pred --cccc
Q 045895 166 --VARS 169 (194)
Q Consensus 166 --~~~~ 169 (194)
+++.
T Consensus 727 ~~~l~v 732 (845)
T 3abz_A 727 ISDFKV 732 (845)
T ss_dssp EEEEEE
T ss_pred cccccc
Confidence 8864
No 2
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=100.00 E-value=1.1e-43 Score=337.71 Aligned_cols=189 Identities=24% Similarity=0.315 Sum_probs=152.8
Q ss_pred CCccCHHHHHHhhcCC-CcEEEEecCCC--hhhhhcCCCCEEEEEecCCCcccc-------cCCCCCCCCCCChHHHHHH
Q 045895 2 ATGTTILGAIRSAVDS-STEVVYRDNPD--SDFVKSNNFDYAIVAVGEAPYAET-------AGDSMTLTMLDPDPSVITN 71 (194)
Q Consensus 2 ~~~~t~~~~l~~~~~~-~~~v~~~~~~~--~~~~~a~~aD~vIv~vg~~~~~e~-------~gdr~~l~l~~~q~~li~~ 71 (194)
++.+||++||++++.. +..+.|....+ +++.+++++|++||++|.... |. .|||.+|.||..|++||++
T Consensus 390 ~~~~t~~~~i~~~~~~~g~~v~~~~~~~~~~a~~~A~~aDv~Iv~vg~~~g-Eg~~~~~g~~gDR~~l~Lp~~Q~~Li~~ 468 (713)
T 3zyz_A 390 PYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIVFITADSG-EGYITVEGNAGDRNNLDPWHNGNALVQA 468 (713)
T ss_dssp SCCCCHHHHHHHHHHTTTCEEEEECSCCHHHHHHHHTTCSEEEEEEEECCB-CTTCCBTTBCSSCSCSSCSTTHHHHHHH
T ss_pred CCCCCHHHHHHHHhccCCeEEEEeCCccHHHHHHHhhcCCEEEEEecccCC-CCccccccCCCCcccccCChhHHHHHHH
Confidence 4568999999998753 45777765433 356678999999999986431 21 2499999999999999999
Q ss_pred Hhh-CCCEEEEEecCcceecccccc--ccceeEEccCCCch-HHHHHHHHcCCCCCCCCcceeecCCCCCCCcc------
Q 045895 72 VCE-AVKCVVIIISGRPIVIEPYIS--SVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFKTVDQLPMN------ 141 (194)
Q Consensus 72 l~~-~~~vVvVl~~g~P~~l~~~~~--~~~Ail~a~~pG~~-g~AlAdvL~G~~nPsGkLPvT~p~~~~~~p~~------ 141 (194)
+++ ++|+|||+++|+|+.|++|.+ +++|||++|+||++ |+|+||||||++|||||||+|||++.+|+|.+
T Consensus 469 v~~~~~~~VVVl~sG~p~~~~~w~~~~~v~Ail~aw~pGqegG~AiAdvL~G~~nPSGkLP~T~p~~~~d~p~~~~~~~~ 548 (713)
T 3zyz_A 469 VAGANSNVIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGS 548 (713)
T ss_dssp HHHHCSCEEEEEEESSCCCCHHHHTCTTEEEEEECCCCGGGHHHHHHHHHTTSSCCCCCCSSCBCSCGGGSSCCCCCSSE
T ss_pred HHHhCCCeEEEEecCCcccchhhhhccccCEEEEcCCCCchhhheehhhhcCCcCCCccCcceecCChhhCCCccccCCc
Confidence 998 999999999999999977864 79999999999999 99999999999999999999999999999953
Q ss_pred --------CCCCCC-----CccCCCcccCCCCcccccccccCc--c--------cCCCCccceEEEEEEEEEE
Q 045895 142 --------VGDPHY-----DPLFPFDFGLKTESVPSIVARSTS--A--------GVDGKPFVFLVMISLIFAL 191 (194)
Q Consensus 142 --------~~~~~~-----~p~ypFG~GLsYt~f~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~ 191 (194)
++|||| +|+||||||||||+|+|++++.+. . ..+|.+++++..++++..|
T Consensus 549 ~~y~eg~~vgYRy~d~~~~~plypFG~GLSYTtF~ys~l~~~~~~~~~~~~~~~~~gg~~~~~~~~~~vsv~V 621 (713)
T 3zyz_A 549 DSFSEGLFIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVATVTVDI 621 (713)
T ss_dssp ECCTTTTCCHHHHHHHTTCCCSBCTTCCBCSSCEEEEEEEEEECCCCEECCSCEETTEETTTTSEEEEEEEEE
T ss_pred cccCCCCccCceeccCCCCceeecCCCCCCcccEEEeeeEeccccccCcccccccccccccccCCeEEEEEEE
Confidence 235665 599999999999999999886322 1 1244455555556666554
No 3
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A
Probab=100.00 E-value=5.4e-42 Score=328.95 Aligned_cols=161 Identities=35% Similarity=0.636 Sum_probs=145.0
Q ss_pred CCccCHHHHHHhhcCC-CcEEEEecCCChhhhhcCCCCEEEEEecCCCcccccCCCCCCCCC---CChHHHHHHHhh-CC
Q 045895 2 ATGTTILGAIRSAVDS-STEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTML---DPDPSVITNVCE-AV 76 (194)
Q Consensus 2 ~~~~t~~~~l~~~~~~-~~~v~~~~~~~~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~---~~q~~li~~l~~-~~ 76 (194)
|+.+||++||+++++. +..+.|.... ..++++|++||++|+.++.|.+|||.+|.|| ..|.+||+++++ ++
T Consensus 448 ~~~~t~l~gi~~~~~~~~~~v~~~~~~----~~a~~aDv~Iv~~Ge~~~~e~~gDr~~L~lp~g~~~q~~Li~av~a~g~ 523 (822)
T 3rrx_A 448 PNATSIFSGLQSQVTKAGGKITLSESG----EYTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNI 523 (822)
T ss_dssp TTCBCHHHHHHHHHHHTTCEEEECTTC----CCSSCCSEEEEEEECCCCCGGGGCCSCCBTTTTTCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhcCCeEEEcccc----cccccCCeEEEEecCCcccccCCCcccccCCCCChHHHHHHHHHHHhCC
Confidence 4679999999998753 3577876332 3467899999999998877888899999999 579999999998 99
Q ss_pred CEEEEEecCcceeccccccccceeEEccCCCchHHHHHHHHcCCC------CCCCCcceeecCCCCCCCccCCCCCCCcc
Q 045895 77 KCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDY------GFSGKLPRSWFKTVDQLPMNVGDPHYDPL 150 (194)
Q Consensus 77 ~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~g~AlAdvL~G~~------nPsGkLPvT~p~~~~~~p~~~~~~~~~p~ 150 (194)
|||||+++|||+.|++|.++++|||++|+||++|.||||||||++ |||||||+|||++.+|+|.++++..|+|+
T Consensus 524 pvVvVl~sGrP~~l~~~~~~~~Ail~aw~pG~eGgAiAdVLfG~v~g~~~~nPSGkLP~T~P~~~~q~P~~~~~~~~~Pl 603 (822)
T 3rrx_A 524 PVVTVFLSGRPLWVNKELNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADYDPL 603 (822)
T ss_dssp CEEEEEECSSCCBCHHHHHTCSEEEEEECCCSBTHHHHHHHBBCTTSCBSCCCCCCCSSCBCSSTTCTTCCTTCSSCCCS
T ss_pred CEEEEEeCCcceeccchhhhCCeEEEcCCCCchhHHHHHHHhcccccccccCCCCCCceeccCCcccCCcccCCCCCccc
Confidence 999999999999999999999999999999999449999999987 99999999999999999999999999999
Q ss_pred CCCcccCCCCcccccc
Q 045895 151 FPFDFGLKTESVPSIV 166 (194)
Q Consensus 151 ypFG~GLsYt~f~~~~ 166 (194)
||||||||||+|+|..
T Consensus 604 ypFG~GLSYt~f~~~~ 619 (822)
T 3rrx_A 604 FAYGYGLTYQDNINVP 619 (822)
T ss_dssp BCTTCCBCTTCCCCCC
T ss_pred cCCCCCcCCCCCcccc
Confidence 9999999999999955
No 4
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A*
Probab=100.00 E-value=6.7e-42 Score=320.24 Aligned_cols=159 Identities=62% Similarity=1.170 Sum_probs=148.7
Q ss_pred CccCHHHHHHhhcCCCcEEEEecCCChhhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCCEEEEE
Q 045895 3 TGTTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVVII 82 (194)
Q Consensus 3 ~~~t~~~~l~~~~~~~~~v~~~~~~~~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~vVvVl 82 (194)
..+|++++|++.++...++.|..+++.+..+++++|+|||++|++++.|.+|||.+|.||..|.+||+++++++|+|||+
T Consensus 443 ~~~t~~~~l~~~~~~~~~v~~~~~~~~~~~~a~~aD~viv~~g~~~~~e~~gdr~~l~lp~~q~~li~~v~~~~~~VvVl 522 (602)
T 1x38_A 443 VGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVL 522 (602)
T ss_dssp SCBCHHHHHHHHSCTTCEEEEESSCCHHHHHHTTCSCEEEEEECCCCCGGGGCCSSCCCCSSSHHHHHHHHTTSCEEEEE
T ss_pred CcccHHHHHHHHhCCCeEEEEcCCCCHHHHHHhhCCEEEEEeccCcccccCCCcCCcCCChhHHHHHHHHHhCCCEEEEE
Confidence 46899999999887667899998887655568999999999998877778889999999999999999999899999999
Q ss_pred ecCcceeccccccccceeEEccCCCchHHHHHHHHcCCCCCCCCcceeecCCCCCCCccCCCCCCCccCCCcccCCCCc
Q 045895 83 ISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGFSGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGLKTES 161 (194)
Q Consensus 83 ~~g~P~~l~~~~~~~~Ail~a~~pG~~g~AlAdvL~G~~nPsGkLPvT~p~~~~~~p~~~~~~~~~p~ypFG~GLsYt~ 161 (194)
++|+|+.|++|.++++|||++|+||++++|+||+|||++|||||||+|||++.+|+|.+++||+|+|+||||||||||+
T Consensus 523 ~~g~P~~l~~~~~~~~Ail~a~~pG~~g~AiadvL~G~~nPsGkLP~t~p~~~~~~p~~~g~~~~~plypFG~GLSYt~ 601 (602)
T 1x38_A 523 ISGRPVVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTNA 601 (602)
T ss_dssp ECSSCCCCHHHHHHCSEEEEEECCCSBTHHHHHHHTTSSCCCCCCSSCBCSCGGGCSCCTTCSSCCCSBCTTCCBCCCC
T ss_pred eCCCceeccchhhccCeEEeccCCchHHHHHHHHHcCCCCCCccCcccccCccccCCccCCCCCCCccCcCCCCcCCCC
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999999999996
No 5
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=100.00 E-value=1.9e-41 Score=322.75 Aligned_cols=165 Identities=24% Similarity=0.415 Sum_probs=139.5
Q ss_pred CCccCHHHHHHhh-cCC--CcEEEEe-------------cC---C---------------ChhhhhcCCCCEEEEEecCC
Q 045895 2 ATGTTILGAIRSA-VDS--STEVVYR-------------DN---P---------------DSDFVKSNNFDYAIVAVGEA 47 (194)
Q Consensus 2 ~~~~t~~~~l~~~-~~~--~~~v~~~-------------~~---~---------------~~~~~~a~~aD~vIv~vg~~ 47 (194)
++.+||++||+++ ++. +.++.|. ++ + .+++.+++++|+|||++|++
T Consensus 376 ~~~vt~~~gl~~~G~~~~~~~~v~y~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~a~~~a~~aDvvIv~vg~~ 455 (721)
T 2x41_A 376 RYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVIVISRI 455 (721)
T ss_dssp SCCCCHHHHHHHTTCCBCHHHHHHHHHHHHHHHHSTTTSCBC-----CBCCCCCSCCSCHHHHHHHHHHCSEEEEEEECC
T ss_pred CCCCCHHHHHHHhccCCCCceEEEEeecccccccccccCCCccceeccccCCCchhhhcHHHHHHHHhcCCEEEEEEecc
Confidence 3568999999998 542 1234454 33 1 23455678999999999986
Q ss_pred CcccccC-CCC----CCCCCCChHHHHHHHh----h-CCCEEEEEecCcceeccccccccceeEEccCCCch-HHHHHHH
Q 045895 48 PYAETAG-DSM----TLTMLDPDPSVITNVC----E-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDV 116 (194)
Q Consensus 48 ~~~e~~g-dr~----~l~l~~~q~~li~~l~----~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~-g~AlAdv 116 (194)
+.|| ||. +|.||..|++||++++ + ++|+|||+++|+|++|++|.++++|||++|+||++ |+|+|||
T Consensus 456 ---~gEg~Dr~~~~~~l~Lp~~q~~LI~~v~~~~~~~~~~vVVVl~~g~P~~l~~~~~~v~AiL~a~~pG~egg~AlAdV 532 (721)
T 2x41_A 456 ---SGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSWRDLVDGILLVWQAGQETGRIVADV 532 (721)
T ss_dssp ---CBTTCCCCSSBTTTBCCHHHHHHHHHHHHHHHHTTCCEEEEEECSSCCCCTTTGGGCSEEEECCCCGGGHHHHHHHH
T ss_pred ---ccccccccCCCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCceEccchhhcCCEEEEcCCCchhHHHHHHHH
Confidence 3333 999 9999999999999999 7 89999999999999998899999999999999999 9999999
Q ss_pred HcCCCCCCCCcceeecCCCCCCCcc--------------------CCCCCC-----CccCCCcccCCCCccccccccc
Q 045895 117 LFGDYGFSGKLPRSWFKTVDQLPMN--------------------VGDPHY-----DPLFPFDFGLKTESVPSIVARS 169 (194)
Q Consensus 117 L~G~~nPsGkLPvT~p~~~~~~p~~--------------------~~~~~~-----~p~ypFG~GLsYt~f~~~~~~~ 169 (194)
|||++|||||||+|||++.+|+|.+ ++|||| +|+||||||||||+|+|++++.
T Consensus 533 L~G~vnPSGkLPvT~p~~~~~~p~~~~~~~~~~~~~~~~y~eg~~vgYry~d~~~~~plypFG~GLSYTtF~ys~~~~ 610 (721)
T 2x41_A 533 LTGRINPSGKLPTTFPRDYSDVPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFEYSDLNV 610 (721)
T ss_dssp HHTSSCCCCCCSSCEESSGGGCSCTTTTCBSTTSCSEEECTTTTCCTHHHHHHHTCCEEECTTCCBCSSCEEEEEEEE
T ss_pred HcCCCCCCCCCceeecCccccCccccCCCCCccccccccccCCcccccceeecCCCceeeccCCCCCcceeEeeceEe
Confidence 9999999999999999999998861 145666 5999999999999999999864
No 6
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=99.95 E-value=2.8e-28 Score=229.61 Aligned_cols=145 Identities=15% Similarity=0.177 Sum_probs=110.9
Q ss_pred ccCHHHHHHhhcCCC-cE----EEEecC----CChhhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCCh---------
Q 045895 4 GTTILGAIRSAVDSS-TE----VVYRDN----PDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPD--------- 65 (194)
Q Consensus 4 ~~t~~~~l~~~~~~~-~~----v~~~~~----~~~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q--------- 65 (194)
..|++++|+++.+.. .. ..+... .+.++.+++++|+||++++.... . ...++.+|..|
T Consensus 465 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~aDvvIv~~~~~~~--~--~~e~~~l~~~q~~~~~~~~~ 540 (642)
T 3bmx_A 465 TASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKN--D--PVVNDGVIDDTISDSSKWAT 540 (642)
T ss_dssp HHHHHHHHHHHHHTTSSCCCEEEEEECTTCCCCHHHHHHHHHCSEEEEEECCSSC--C--CCEETTEECCCCCSSTTHHH
T ss_pred hhhHHHHHHHhhCCCCeeEEeccCCCCcchhhHHHHHHHHhhCCEEEEEecCCCC--C--chhccCCccccccccccccc
Confidence 357899999886321 11 112211 12345678899999996654210 0 12245677788
Q ss_pred ---HHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCC--------Cch-HHHHHHHHcCCCCCCCCcceeec
Q 045895 66 ---PSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLP--------GTE-GQGVTDVLFGDYGFSGKLPRSWF 132 (194)
Q Consensus 66 ---~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~p--------G~~-g~AlAdvL~G~~nPsGkLPvT~p 132 (194)
.+||+++++ ++|+|+|.+ |+|+++. |.++++|||++|++ |++ |+|+||+|||++|||||||+|||
T Consensus 541 ~~~~~li~~~~~~~~pvVvv~~-g~P~~l~-~~~~~~Ail~a~~~~G~~~g~~g~~~g~AiadvLfG~~nPsGkLPvt~p 618 (642)
T 3bmx_A 541 VFPRAVMKAALQHNKPFVLMSL-RNPYDAA-NFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIP 618 (642)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEC-SCGGGGG-GCTTCSEEEECSCCCCEETTEESCSHHHHHHHHHTTSSCCCCCCSSCEE
T ss_pred hhHHHHHHHHHHcCCCEEEEec-CChhccc-cccccCeEEEEccCcccccccccchHHHHHHHHHcCCCCCCccCceeee
Confidence 999999987 889988875 9999995 45679999999999 788 99999999999999999999999
Q ss_pred CCCCCCCccCCCCCCCccCCCcccCCCCccc
Q 045895 133 KTVDQLPMNVGDPHYDPLFPFDFGLKTESVP 163 (194)
Q Consensus 133 ~~~~~~p~~~~~~~~~p~ypFG~GLsYt~f~ 163 (194)
++.. | .+|+||||||||||+|.
T Consensus 619 ~~~~--~-------~~plfpfG~GLsYt~~~ 640 (642)
T 3bmx_A 619 SVTK--P-------GNTLYPLGYGLNIKTGR 640 (642)
T ss_dssp CSSS--T-------TSEEECTTCCBCTTTCS
T ss_pred ccCC--C-------CCcccCCCCCccCCCCC
Confidence 9872 2 37999999999999985
No 7
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A*
Probab=74.83 E-value=2 Score=39.52 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCE-EEEEecCcceeccccccccceeEEccCCCch---HHHHHHHHcCC
Q 045895 66 PSVITNVCEAVKC-VVIIISGRPIVIEPYISSVDALVAAWLPGTE---GQGVTDVLFGD 120 (194)
Q Consensus 66 ~~li~~l~~~~~v-VvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~---g~AlAdvL~G~ 120 (194)
.++++++.+...+ -+|+. |+||.++++.+..+.|-++|.+||+ ++.+.+.|++.
T Consensus 466 ~~~~~~l~~~~~~~~~~~y-g~py~~~~~~~~~~~~p~~~~~gq~~~~q~~~~~~~~~~ 523 (535)
T 3sql_A 466 IDVLQKIAAQIPLQGVIFY-GSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEE 523 (535)
T ss_dssp HHHHHHHHHHSCEEEEEEE-ECCTTHHHHHHHCTTSCEEEESCCSHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhcCceeEEEEe-CChhHHHHHHHHhhcCCcccCCccCHHHHHHHHHHHhcc
Confidence 5688888874444 45555 9999997776555578899999997 56666777774
No 8
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=61.25 E-value=7.8 Score=33.05 Aligned_cols=58 Identities=14% Similarity=0.351 Sum_probs=32.2
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCC-CC-CChHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLT-ML-DPDPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~-l~-~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
...++||+||++.|... ..| +|.+|- -. .--+++.+++.+ +++.+++++ +||+++.-+
T Consensus 72 ~a~~~aDiVvi~ag~~~---kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvv-tNPvdi~t~ 133 (326)
T 3vku_A 72 SDAKDADLVVITAGAPQ---KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA-ANPVDILTY 133 (326)
T ss_dssp GGGTTCSEEEECCCCC-------------------CHHHHHHHHHTTTCCSEEEEC-SSSHHHHHH
T ss_pred HHhcCCCEEEECCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEc-cCchHHHHH
Confidence 45789999999988532 222 444431 11 123456677777 666666666 899987544
No 9
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=60.45 E-value=4.3 Score=34.82 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=34.1
Q ss_pred hcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+++||+||++.|... .+| +|.++ -..- +++++++.+ +.+.+++++ +||.++.-+
T Consensus 86 ~~~daDiVIitaG~p~---kpG~tR~dl--l~~N~~I~k~i~~~I~k~~P~a~ilvv-tNPvdi~t~ 146 (330)
T 3ldh_A 86 VSAGSKLVVITAGARQ---QEGESRLNL--VQRNVNIFKFIIPNIVKHSPDCLKELH-PELGTDKNK 146 (330)
T ss_dssp SCSSCSEEEECCSCCC---CSSCCTTGG--GHHHHHHHHHHHHHHHHHCTTCEEEEC-SSSHHHHHH
T ss_pred HhCCCCEEEEeCCCCC---CCCCCHHHH--HHhhHHHHHHHHHHHHhhCCCceEEeC-CCccHHHHH
Confidence 3789999999998643 222 44332 2222 234556666 667777666 899988543
No 10
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=55.94 E-value=2.5 Score=35.59 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=33.1
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCC--CChHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTML--DPDPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~--~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|... ..| +|.+|-.- .--+++.+++.+ +++.++++. +||+++.-+
T Consensus 65 ~a~~~aDiVViaag~~~---kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivv-sNPvd~~t~ 126 (294)
T 1oju_A 65 SLLKGSEIIVVTAGLAR---KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVV-TNPMDVMTY 126 (294)
T ss_dssp GGGTTCSEEEECCCCCC---CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-CCcchHHHH
Confidence 46789999999988642 111 23221000 001234455666 666777766 799998544
No 11
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=55.09 E-value=2.6 Score=35.57 Aligned_cols=56 Identities=16% Similarity=0.351 Sum_probs=33.4
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||+..|... ..| +|.+| -..- +++.+++++ +.+.++++. +||++..-+
T Consensus 65 ~~~~~aDvVvitAG~pr---kpGmtR~dL--l~~Na~I~~~i~~~i~~~~p~aivlvv-sNPvd~~t~ 126 (294)
T 2x0j_A 65 SLLKGSEIIVVTAGLAR---KPGMTRLDL--AHKNAGIIKDIAKKIVENAPESKILVV-TNPMDVMTY 126 (294)
T ss_dssp GGGTTCSEEEECCCCCC---CSSSCHHHH--HHHHHHHHHHHHHHHHTTSTTCEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEEecCCCC---CCCCchHHH--HHHHHHHHHHHHHHHHhcCCceEEEEe-cCcchhhHH
Confidence 45789999999998643 111 33322 1111 234556666 566666665 999987543
No 12
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=52.81 E-value=3 Score=35.45 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=31.4
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+.++||+||++.|... ..| +|.+| -.. -+++.+++.+ +++.+++++ +||+++.-+
T Consensus 65 ~a~~~aDvVii~ag~~~---kpG~~R~dl--~~~N~~i~~~i~~~i~~~~p~a~vivv-tNPvd~~t~ 126 (314)
T 3nep_X 65 GPTEDSDVCIITAGLPR---SPGMSRDDL--LAKNTEIVGGVTEQFVEGSPDSTIIVV-ANPLDVMTY 126 (314)
T ss_dssp GGGTTCSEEEECCCC----------CHHH--HHHHHHHHHHHHHHHHTTCTTCEEEEC-CSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHhhHHHHHHHHHHHHHhCCCcEEEec-CCchhHHHH
Confidence 45789999999988642 111 33221 111 1234455556 566666666 899988544
No 13
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=51.98 E-value=3 Score=35.65 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=32.9
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCC-CC-CChHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLT-ML-DPDPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~-l~-~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|... ..| +|.+|- .. .--+++++++.+ +++.+++++ +||+++.-+
T Consensus 69 ~a~~~aDvVvi~ag~p~---kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvv-tNPvd~~t~ 130 (326)
T 3pqe_A 69 EDCKDADIVCICAGANQ---KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA-TNPVDILTY 130 (326)
T ss_dssp GGGTTCSEEEECCSCCC---CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEEecccCC---CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc-CChHHHHHH
Confidence 35789999999998632 111 222210 00 011234556666 566666655 899988544
No 14
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=50.60 E-value=9.3 Score=27.59 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=41.5
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCchH
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEG 110 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~g 110 (194)
...+.+|++||-+|.... . ..-++.-|+...+ ++|+|.|-.-|. -.+.....+...-+..|. .
T Consensus 34 ~~I~~~~~vIvL~G~~t~--~---------s~wv~~EI~~A~~~gkpIigV~~~g~-~~~P~~l~~~a~~iV~Wn----~ 97 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGT--R---------RDEILGAVDLARKSSKPIITVRPYGL-ENVPPELEAVSSEVVGWN----P 97 (111)
T ss_dssp CCSSSCSEEEEEGGGTTT--S---------HHHHHHHHHHHTTTTCCEEEECCSSS-SCCCTTHHHHCSEEECSC----H
T ss_pred CccccCCEEEEEeCCCcC--C---------ChHHHHHHHHHHHcCCCEEEEEcCCC-CcCCHHHHhhCceeccCC----H
Confidence 457889999999986430 0 1122223444444 899988865343 233333333333455663 2
Q ss_pred HHHHHHHcCCCCC
Q 045895 111 QGVTDVLFGDYGF 123 (194)
Q Consensus 111 ~AlAdvL~G~~nP 123 (194)
+.+.+.|-|..+|
T Consensus 98 ~~I~~aI~~~~~~ 110 (111)
T 1eiw_A 98 HCIRDALEDALDV 110 (111)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHhccCC
Confidence 5566666555444
No 15
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=50.53 E-value=4.8 Score=34.30 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=32.4
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|... ..| .|.++ -... +++++++.+ +++.+++++ +||+++.-+
T Consensus 71 ~a~~~aDiVIiaag~p~---k~G~~R~dl--~~~N~~i~~~i~~~i~~~~p~a~iivv-tNPvd~~t~ 132 (324)
T 3gvi_A 71 AAIEGADVVIVTAGVPR---KPGMSRDDL--LGINLKVMEQVGAGIKKYAPEAFVICI-TNPLDAMVW 132 (324)
T ss_dssp GGGTTCSEEEECCSCCC---C-----CHH--HHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHH
T ss_pred HHHCCCCEEEEccCcCC---CCCCCHHHH--HHhhHHHHHHHHHHHHHHCCCeEEEec-CCCcHHHHH
Confidence 46789999999998542 112 33321 1111 234455556 666677666 899988544
No 16
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=50.18 E-value=3.5 Score=34.97 Aligned_cols=56 Identities=14% Similarity=0.376 Sum_probs=33.4
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
..+++||+||++.|... ..| +|.+| -.. -+++++++.+ +++.+++++ +||.++.-+
T Consensus 74 ~a~~~aDvVIiaag~p~---kpg~~R~dl--~~~N~~i~~~i~~~i~~~~p~a~vlvv-sNPvd~~t~ 135 (315)
T 3tl2_A 74 ADTADSDVVVITAGIAR---KPGMSRDDL--VATNSKIMKSITRDIAKHSPNAIIVVL-TNPVDAMTY 135 (315)
T ss_dssp GGGTTCSEEEECCSCCC---CTTCCHHHH--HHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHH
T ss_pred HHhCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCeEEEEC-CChHHHHHH
Confidence 45789999999998643 111 33221 111 1234555666 666666666 899988544
No 17
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=49.39 E-value=4.7 Score=34.49 Aligned_cols=55 Identities=22% Similarity=0.509 Sum_probs=33.2
Q ss_pred hcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+++||+||++.|... ..| +|.+ |-..- +++.+++.+ +++.+++++ +||+++.-+
T Consensus 84 ~~~~aDiVvi~aG~~~---kpG~tR~d--L~~~N~~I~~~i~~~i~~~~p~a~vlvv-tNPvdi~t~ 144 (331)
T 4aj2_A 84 VTANSKLVIITAGARQ---QEGESRLN--LVQRNVNIFKFIIPNVVKYSPQCKLLIV-SNPVDILTY 144 (331)
T ss_dssp GGTTEEEEEECCSCCC---CTTCCGGG--GHHHHHHHHHHHHHHHHHHCTTCEEEEC-SSSHHHHHH
T ss_pred HhCCCCEEEEccCCCC---CCCccHHH--HHHHHHHHHHHHHHHHHHHCCCeEEEEe-cChHHHHHH
Confidence 5789999999988643 122 3333 22211 234455555 666777666 899987543
No 18
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=46.14 E-value=5.5 Score=33.36 Aligned_cols=57 Identities=18% Similarity=0.343 Sum_probs=30.6
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||+++|... ....+|.++ -... +++.+++.+ +.+.++++. .||+++.-+
T Consensus 66 ~a~~~aD~Vi~a~g~p~--~~g~~r~dl--~~~n~~i~~~i~~~i~~~~p~a~vi~~-tNPv~~~t~ 127 (309)
T 1ur5_A 66 ADTANSDVIVVTSGAPR--KPGMSREDL--IKVNADITRACISQAAPLSPNAVIIMV-NNPLDAMTY 127 (309)
T ss_dssp GGGTTCSEEEECCCC----------CHH--HHHHHHHHHHHHHHHGGGCTTCEEEEC-CSSHHHHHH
T ss_pred HHHCCCCEEEEcCCCCC--CCCCCHHHH--HHHHHHHHHHHHHHHHhhCCCeEEEEc-CCchHHHHH
Confidence 45789999999998643 111133322 1111 134455555 656666555 899988543
No 19
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=45.43 E-value=14 Score=28.51 Aligned_cols=46 Identities=15% Similarity=-0.032 Sum_probs=32.9
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-----------------hCCCEEEEEecCcc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-----------------EAVKCVVIIISGRP 87 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-----------------~~~~vVvVl~~g~P 87 (194)
.++++||.+|++.=. -+..+|..-+.+|+.+. ++|+++++..+|+|
T Consensus 69 ~~l~~AD~iV~~~P~----------y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~ 131 (196)
T 3lcm_A 69 DLVTWADHLIFIFPI----------WWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTP 131 (196)
T ss_dssp HHHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSC
T ss_pred HHHHhCCEEEEECch----------hhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCc
Confidence 356789999998722 24666777777888772 26788888888887
No 20
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=44.20 E-value=8.4 Score=32.49 Aligned_cols=56 Identities=16% Similarity=0.447 Sum_probs=30.1
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|... ..| .|.++ -.... ++++++.+ +.+.++++. .||+++.-+
T Consensus 68 ~a~~~aDvVii~ag~~~---~~g~~R~dl--~~~n~~i~~~i~~~i~~~~p~a~iiv~-tNPv~~~t~ 129 (318)
T 1ez4_A 68 SDCKDADLVVITAGAPQ---KPGESRLDL--VNKNLNILSSIVKPVVDSGFDGIFLVA-ANPVDILTY 129 (318)
T ss_dssp GGGTTCSEEEECCCC-------------C--HHHHHHHHHHHHHHHHHTTCCSEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCeEEEEe-CCcHHHHHH
Confidence 45789999999998532 112 33332 11111 23444555 566666665 999988544
No 21
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=44.18 E-value=17 Score=27.34 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=32.1
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-----------------hCCCEEEEEecCcce
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-----------------EAVKCVVIIISGRPI 88 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-----------------~~~~vVvVl~~g~P~ 88 (194)
....+||.+|++.-. -...+|..-+.+|+.+. ++|+++++..+|+++
T Consensus 82 ~~l~~aD~iv~~~P~----------y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~ 145 (201)
T 1t5b_A 82 AELKAHDVIVIAAPM----------YNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIH 145 (201)
T ss_dssp HHHHHCSEEEEECCC----------BTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCC
T ss_pred HHHHhCCEEEEEeCc----------ccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCC
Confidence 346789999997621 24556777777888875 256777777767664
No 22
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=42.07 E-value=4.5 Score=34.27 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=32.1
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
...+++|+||++.|... ..| +|.+ |-.. -+++.+++.+ +++.+++++ +||+++.-+
T Consensus 65 ~~~~~aDivii~ag~~r---kpG~~R~d--ll~~N~~I~~~i~~~i~~~~p~a~vlvv-tNPvd~~t~ 126 (312)
T 3hhp_A 65 PALEGADVVLISAGVAR---KPGMDRSD--LFNVNAGIVKNLVQQVAKTCPKACIGII-TNPVNTTVA 126 (312)
T ss_dssp HHHTTCSEEEECCSCSC---CTTCCHHH--HHHHHHHHHHHHHHHHHHHCTTSEEEEC-SSCHHHHHH
T ss_pred HHhCCCCEEEEeCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCcEEEEe-cCcchhHHH
Confidence 45789999999988632 111 2222 1111 1234455555 666666666 899987543
No 23
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=41.15 E-value=13 Score=31.72 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=32.5
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCE-EEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKC-VVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~v-VvVl~~g~P~~l~~~ 93 (194)
...+++|+||++.|... ..| +|.+| -.. -+++++++.+ +.+- +++++ +||.++.-.
T Consensus 75 ~~~~daDvVvitAg~pr---kpG~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~~vivv-sNPvd~~t~ 137 (333)
T 5mdh_A 75 IAFKDLDVAILVGSMPR---RDGMERKDL--LKANVKIFKCQGAALDKYAKKSVKVIVV-GNPANTNCL 137 (333)
T ss_dssp HHTTTCSEEEECCSCCC---CTTCCTTTT--HHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCchHHHHH
Confidence 45789999999877532 222 34332 111 2245666666 6554 35555 899987543
No 24
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=39.97 E-value=9.6 Score=20.63 Aligned_cols=10 Identities=30% Similarity=1.221 Sum_probs=8.3
Q ss_pred CCCccCCCcc
Q 045895 146 HYDPLFPFDF 155 (194)
Q Consensus 146 ~~~p~ypFG~ 155 (194)
.|+|.|||++
T Consensus 10 dFnPVYPYd~ 19 (26)
T 1x9t_B 10 TFNPVYPYDT 19 (26)
T ss_pred cCcccccCCC
Confidence 4789999986
No 25
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=38.22 E-value=14 Score=31.20 Aligned_cols=54 Identities=26% Similarity=0.233 Sum_probs=31.9
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
.++++||+||+++|... ..| .|.++ -.. -+++.+++.+ +++.++++. .||.++.
T Consensus 78 ~al~~aD~VI~avg~p~---k~g~tr~dl--~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~~ 137 (328)
T 2hjr_A 78 EYLQNSDVVIITAGVPR---KPNMTRSDL--LTVNAKIVGSVAENVGKYCPNAFVICI-TNPLDAM 137 (328)
T ss_dssp GGGTTCSEEEECCSCCC---CTTCCSGGG--HHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHH
T ss_pred HHHCCCCEEEEcCCCCC---CCCCchhhH--HhhhHHHHHHHHHHHHHHCCCeEEEEe-cCchHHH
Confidence 45789999999998532 222 33322 111 1234555555 666666655 8899875
No 26
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=38.16 E-value=48 Score=24.56 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=27.9
Q ss_pred cCCCCEEEEEecCCCcccccCCCCCCCCCCCh-----HHHHHHHhh-CCCEEEEEecCcceec
Q 045895 34 SNNFDYAIVAVGEAPYAETAGDSMTLTMLDPD-----PSVITNVCE-AVKCVVIIISGRPIVI 90 (194)
Q Consensus 34 a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q-----~~li~~l~~-~~~vVvVl~~g~P~~l 90 (194)
..+.|+||+.+|.+ |. ..+.++ +++|+.+.+ +..+.+++.+..|+..
T Consensus 72 ~~~pd~Vvi~~G~N-------D~---~~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~ 124 (200)
T 4h08_A 72 NTKFDVIHFNNGLH-------GF---DYTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRT 124 (200)
T ss_dssp HSCCSEEEECCCSS-------CT---TSCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCEE
T ss_pred cCCCCeEEEEeeeC-------CC---CCCHHHHHHHHHHHHHHHhhhCCCccEEEeccCCCcc
Confidence 46789999999864 21 223222 357777766 5555555554556544
No 27
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=38.12 E-value=10 Score=31.79 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=30.7
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
+.+++|+||++.|.... ...+|.++ -.. -+++++++.+ +.+.++++. .||+++.
T Consensus 65 a~~~aDvVvi~ag~~~~--~g~~r~dl--~~~n~~i~~~i~~~i~~~~p~a~viv~-sNPv~~~ 123 (314)
T 1mld_A 65 CLKGCDVVVIPAGVPRK--PGMTRDDL--FNTNATIVATLTAACAQHCPDAMICII-SNPVNST 123 (314)
T ss_dssp HHTTCSEEEECCSCCCC--TTCCGGGG--HHHHHHHHHHHHHHHHHHCTTSEEEEC-SSCHHHH
T ss_pred HhCCCCEEEECCCcCCC--CCCcHHHH--HHHHHHHHHHHHHHHHhhCCCeEEEEE-CCCcchh
Confidence 57899999999986431 11133222 111 1234455555 555555555 9999975
No 28
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=38.06 E-value=7 Score=33.12 Aligned_cols=56 Identities=25% Similarity=0.230 Sum_probs=32.5
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|... ..| .|.++ -.. -+++++++.+ +++.++++. +||+++.-+
T Consensus 69 ~a~~~aDvVIi~ag~p~---k~G~~R~dl--~~~N~~i~~~i~~~i~~~~p~a~vivv-tNPvd~~t~ 130 (321)
T 3p7m_A 69 KDLENSDVVIVTAGVPR---KPGMSRDDL--LGINIKVMQTVGEGIKHNCPNAFVICI-TNPLDIMVN 130 (321)
T ss_dssp GGGTTCSEEEECCSCCC---CTTCCHHHH--HHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHH
T ss_pred HHHCCCCEEEEcCCcCC---CCCCCHHHH--HHHhHHHHHHHHHHHHHHCCCcEEEEe-cCchHHHHH
Confidence 46789999999988532 111 22211 111 1234455556 666666666 899988544
No 29
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=37.96 E-value=55 Score=24.53 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=29.2
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-------hCCCEEEEEecCcc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-------EAVKCVVIIISGRP 87 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-------~~~~vVvVl~~g~P 87 (194)
....+||.+|++.-. . ...+|+.=+.+|+.+. ++||++++..+|++
T Consensus 68 ~~l~~aD~ii~~sP~-----y-----~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~ 120 (193)
T 1rtt_A 68 EQIRAADALLFATPE-----Y-----NYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGR 120 (193)
T ss_dssp HHHHHCSEEEEECCE-----E-----TTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSST
T ss_pred HHHHhCCEEEEEccc-----c-----ccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCC
Confidence 356789999987621 1 3345666667888874 25677766665454
No 30
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=36.83 E-value=14 Score=30.97 Aligned_cols=56 Identities=16% Similarity=0.408 Sum_probs=31.6
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|-.. ..| +|.+ +-.... ++++++.+ +++.++++. ++|+++.-+
T Consensus 70 ~al~~aDvViia~~~~~---~~g~~r~d--l~~~n~~i~~~i~~~i~~~~p~a~~iv~-tNPv~~~~~ 131 (316)
T 1ldn_A 70 DDCRDADLVVICAGANQ---KPGETRLD--LVDKNIAIFRSIVESVMASGFQGLFLVA-TNPVDILTY 131 (316)
T ss_dssp GGTTTCSEEEECCSCCC---CTTTCSGG--GHHHHHHHHHHHHHHHHHHTCCSEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHH--HHHcChHHHHHHHHHHHHHCCCCEEEEe-CCchHHHHH
Confidence 35789999999997532 112 2322 111112 24445555 555555555 999988544
No 31
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=36.77 E-value=28 Score=28.65 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=26.4
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
.++.+|++++++-. .+ +...++.+++.+.+ +.|+|++++
T Consensus 85 ~l~~~D~vl~Vvd~----------~~--~~~~~~~i~~~l~~~~~P~ilvlN 124 (301)
T 1ega_A 85 SIGDVELVIFVVEG----------TR--WTPDDEMVLNKLREGKAPVILAVN 124 (301)
T ss_dssp CCCCEEEEEEEEET----------TC--CCHHHHHHHHHHHSSSSCEEEEEE
T ss_pred HHhcCCEEEEEEeC----------CC--CCHHHHHHHHHHHhcCCCEEEEEE
Confidence 35778998887732 22 44455566677766 789998886
No 32
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=35.02 E-value=11 Score=31.56 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=32.2
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|-.. ..| .|.++ -.. -+++++++.+ +++.++++. .||+++.-+
T Consensus 63 ~a~~~aD~Vi~~ag~~~---k~G~~r~dl--~~~n~~i~~~i~~~i~~~~p~a~iiv~-tNPv~~~t~ 124 (308)
T 2d4a_B 63 EDMRGSDIVLVTAGIGR---KPGMTREQL--LEANANTMADLAEKIKAYAKDAIVVIT-TNPVDAMTY 124 (308)
T ss_dssp GGGTTCSEEEECCSCCC---CSSCCTHHH--HHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHH
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHHCCCeEEEEe-CCchHHHHH
Confidence 35789999999987532 112 22221 111 1234555555 666666655 899987544
No 33
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=34.50 E-value=24 Score=27.52 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=32.0
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-----------------hCCCEEEEEecCccee
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-----------------EAVKCVVIIISGRPIV 89 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-----------------~~~~vVvVl~~g~P~~ 89 (194)
+.++||.+|++.=. -+..+|..-+.+|+.+. ++|+++++..+|+|+.
T Consensus 89 ~~~~aD~iv~~~P~----------y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~ 152 (211)
T 3p0r_A 89 QFLEADKVVFGFPL----------WNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYS 152 (211)
T ss_dssp HHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCS
T ss_pred HHHhCCEEEEEcCh----------hcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCC
Confidence 46789999998732 24556666666777662 2577888887788853
No 34
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=34.45 E-value=36 Score=28.41 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=31.3
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+.++||+||++.|... ..| .|.++ -.. -+++++++.+ +++.++++. .+|+++.-+
T Consensus 70 ~a~~~aDvVii~~g~p~---k~g~~r~dl--~~~n~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~~~ 131 (318)
T 1y6j_A 70 SDVKDCDVIVVTAGANR---KPGETRLDL--AKKNVMIAKEVTQNIMKYYNHGVILVV-SNPVDIITY 131 (318)
T ss_dssp GGGTTCSEEEECCCC---------CHHHH--HHHHHHHHHHHHHHHHHHCCSCEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEEcCCCCC---CCCcCHHHH--HHhhHHHHHHHHHHHHHhCCCcEEEEe-cCcHHHHHH
Confidence 45789999999998532 111 12111 011 1234555655 666666665 999988644
No 35
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=34.44 E-value=23 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=30.7
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-----------------hCCCEEEEEecCcce
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-----------------EAVKCVVIIISGRPI 88 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-----------------~~~~vVvVl~~g~P~ 88 (194)
+..+||.+|++.=. -...+|..=+.+|+.+. ++|+++++..+|+++
T Consensus 91 ~l~~aD~iv~~~P~----------y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~ 153 (208)
T 2hpv_A 91 QFLSADKVVIANPM----------WNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFY 153 (208)
T ss_dssp HHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCC
T ss_pred HHHhCCEEEEEecc----------ccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCC
Confidence 46789999998721 24566777777888874 246666666666654
No 36
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=34.43 E-value=6.7 Score=33.78 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=30.2
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChH----HHHHHHhh-CCC-EEEEEecCcceeccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDP----SVITNVCE-AVK-CVVIIISGRPIVIEP 92 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~----~li~~l~~-~~~-vVvVl~~g~P~~l~~ 92 (194)
.+++++|+||+.-|... ..| +|.+| -..-. ++.+++.+ +.| +++++. +||++..-
T Consensus 96 ~a~~~advVvi~aG~pr---kpGmtR~DL--l~~Na~I~~~~~~~i~~~a~~~~~vlvv-sNPvd~~~ 157 (345)
T 4h7p_A 96 VAFDGVAIAIMCGAFPR---KAGMERKDL--LEMNARIFKEQGEAIAAVAASDCRVVVV-GNPANTNA 157 (345)
T ss_dssp HHTTTCSEEEECCCCCC---CTTCCHHHH--HHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHH
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHHhHHHHHHHHHHHHhhccCceEEEEe-CCCcchHH
Confidence 45789999999887532 111 33322 11111 23445555 444 555554 89987643
No 37
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=34.19 E-value=34 Score=26.54 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=31.2
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-------CCCEEEEEecCcc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-------AVKCVVIIISGRP 87 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-------~~~vVvVl~~g~P 87 (194)
.+.++||.+|++.=+ -+.++|+.-+.+|+.+.. +||+.++..+|++
T Consensus 69 ~~i~~AD~iVi~tP~----------Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~ 121 (199)
T 4hs4_A 69 QQIATADAVVIVTPE----------YNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGM 121 (199)
T ss_dssp HHHHHSSEEEEEECC----------BTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSS
T ss_pred HHHHhCCEEEEEcCc----------cCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCC
Confidence 356789999998732 256677777778888742 4666666665554
No 38
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=32.29 E-value=16 Score=30.30 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=32.2
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCC---hHHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDP---DPSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~---q~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
.+++++|+||+++|.... .. ..|.++- +.+ -+++++++.+ .+..++++. .+|..+.
T Consensus 68 ~a~~~aDiVi~avg~p~~-~g-~~r~d~~-~~~~~i~~~i~~~i~~~~~~~iii~~-sNp~~~~ 127 (317)
T 2ewd_A 68 ADISGSDVVIITASIPGR-PK-DDRSELL-FGNARILDSVAEGVKKYCPNAFVICI-TNPLDVM 127 (317)
T ss_dssp GGGTTCSEEEECCCCSSC-CS-SCGGGGH-HHHHHHHHHHHHHHHHHCTTSEEEEC-CSSHHHH
T ss_pred HHhCCCCEEEEeCCCCCC-CC-CcHHHHH-HhhHHHHHHHHHHHHHHCCCcEEEEe-CChHHHH
Confidence 356799999999985321 11 1333321 111 2345566665 556666665 7898774
No 39
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=32.16 E-value=71 Score=24.58 Aligned_cols=32 Identities=13% Similarity=-0.143 Sum_probs=20.7
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHH
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNV 72 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l 72 (194)
.+++++||.+|++.=. -...+|..-+.+|+.+
T Consensus 65 ~~~l~~AD~iV~~~P~----------y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 65 VQNFLWADVVIWQMPG----------WWMGAPWTVKKYIDDV 96 (204)
T ss_dssp HHHHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHH
T ss_pred HHHHHhCCEEEEECCc----------cccCCCHHHHHHHHHH
Confidence 3567889999998722 2455566555666654
No 40
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=31.66 E-value=9.6 Score=32.00 Aligned_cols=56 Identities=18% Similarity=0.427 Sum_probs=30.8
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|... ..| +|.++ -... +++.+++.+ ++..++++. .+|+++.-+
T Consensus 70 ~a~~~aDvVvi~ag~~~---~~g~~r~dl--~~~n~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~ 131 (317)
T 3d0o_A 70 SDCHDADLVVICAGAAQ---KPGETRLDL--VSKNLKIFKSIVGEVMASKFDGIFLVA-TNPVDILAY 131 (317)
T ss_dssp GGGTTCSEEEECCCCCC---CTTCCHHHH--HHHHHHHHHHHHHHHHHTTCCSEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCcEEEEe-cCcHHHHHH
Confidence 45789999999998632 111 12111 0111 123444555 555666555 799988544
No 41
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=31.56 E-value=35 Score=25.15 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=29.4
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh---------------hCCCEEEEEecCcc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC---------------EAVKCVVIIISGRP 87 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~---------------~~~~vVvVl~~g~P 87 (194)
....+||.+|++.-. -...+|..=+.+|+.+. ++|+++++..+|.|
T Consensus 67 ~~l~~aD~ii~~~P~----------y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~ 127 (184)
T 1rli_A 67 ERILQCHILIFATPI----------YWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDN 127 (184)
T ss_dssp HHHHTCSEEEEEEEC----------BTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSC
T ss_pred HHHHhCCEEEEEeCc----------cccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCC
Confidence 456789999998732 13445555555666542 37788877776664
No 42
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=31.46 E-value=7.6 Score=32.61 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=31.8
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+.++||+||+..|... ..| .|.++ -.. -+++++++.+ +.+.++++. .||+++.-+
T Consensus 63 ~a~~~aD~Vii~ag~~~---~~g~~r~dl--~~~n~~i~~~i~~~i~~~~p~a~iiv~-tNPv~~~t~ 124 (310)
T 2xxj_A 63 GDLEGARAVVLAAGVAQ---RPGETRLQL--LDRNAQVFAQVVPRVLEAAPEAVLLVA-TNPVDVMTQ 124 (310)
T ss_dssp GGGTTEEEEEECCCCCC---CTTCCHHHH--HHHHHHHHHHHHHHHHHHCTTCEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCC---CCCcCHHHH--HHhhHHHHHHHHHHHHHHCCCcEEEEe-cCchHHHHH
Confidence 45789999999988532 111 22211 011 1123444555 666666665 999988644
No 43
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=31.40 E-value=31 Score=26.51 Aligned_cols=45 Identities=7% Similarity=0.140 Sum_probs=30.6
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh---------------------hCCCEEEEEecCcc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC---------------------EAVKCVVIIISGRP 87 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~---------------------~~~~vVvVl~~g~P 87 (194)
+.++||.+|++.=. -+..+|..=+.+|+.+. ++|+++++..+|.|
T Consensus 84 ~l~~AD~iV~~~P~----------y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~ 149 (212)
T 3r6w_A 84 ELFDSDLLVISTPM----------YNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGH 149 (212)
T ss_dssp HHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSS
T ss_pred HHHhCCEEEEEcCc----------ccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCC
Confidence 46789999998722 25666777777888772 15677777776754
No 44
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=31.16 E-value=49 Score=25.31 Aligned_cols=48 Identities=10% Similarity=-0.068 Sum_probs=33.6
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh------------hCCCEEEEEecCcce
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC------------EAVKCVVIIISGRPI 88 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~------------~~~~vVvVl~~g~P~ 88 (194)
..++++||.+|+..=. -..++|..-+.+|+++. ++|+++++..+|+|-
T Consensus 46 ~~~l~~aD~iV~~~P~----------y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~ 105 (177)
T 3ha2_A 46 QSLLLQNDRIILEFPL----------YWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNG 105 (177)
T ss_dssp HHHHHTCSEEEEEEEC----------BTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCG
T ss_pred HHHHHhCCEEEEECCh----------hhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCCh
Confidence 4567899999998621 24566766666777752 267888888878884
No 45
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=30.74 E-value=49 Score=26.59 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=25.3
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCCh-HHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPD-PSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q-~~li~~l~~-~~~vVvVl~ 83 (194)
.++.+|++|+++-.. +-.+...+ .++++.+.. +.|+|+|++
T Consensus 164 ~~~~~d~iilvvd~~----------~~~~~~~~~~~i~~~~~~~~~~~i~v~N 206 (315)
T 1jwy_B 164 YIKKQNAIIVAVTPA----------NTDLANSDALQLAKEVDPEGKRTIGVIT 206 (315)
T ss_dssp HHHSTTEEEEEEEES----------SSCSTTCSHHHHHHHHCSSCSSEEEEEE
T ss_pred HHcCCCeEEEEEEec----------CcchhhhHHHHHHHHhCCCCCcEEEEEc
Confidence 357889888887321 01122223 367777766 789998886
No 46
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=30.64 E-value=4.9 Score=34.60 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=29.5
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCC-CC-CChHHHHHHHhh-CCCEE-EEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLT-ML-DPDPSVITNVCE-AVKCV-VIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~-l~-~~q~~li~~l~~-~~~vV-vVl~~g~P~~l~~~ 93 (194)
.++++||+||++.|... ..| +|.+|- -. .--+++++++.+ +.+.+ ++++ +||+++.-+
T Consensus 72 ~al~dADvVvitaG~p~---kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvv-sNPvd~~t~ 134 (343)
T 3fi9_A 72 EALTDAKYIVSSGGAPR---KEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIII-FNPADITGL 134 (343)
T ss_dssp HHHTTEEEEEECCC----------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEEccCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEe-cCchHHHHH
Confidence 34689999999988632 112 232210 00 011234555666 66664 4444 899987543
No 47
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=30.05 E-value=16 Score=30.68 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=30.5
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCC--CChHHHHHHHhh-CCCEEEEEecCcceec
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTML--DPDPSVITNVCE-AVKCVVIIISGRPIVI 90 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~--~~q~~li~~l~~-~~~vVvVl~~g~P~~l 90 (194)
.+++++|+||++.|.... .. .+|.++..- ..-+++++++.+ +.+.++++. .+|+++
T Consensus 72 ~al~gaDvVi~~ag~~~~-~g-~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~-SNPv~~ 130 (326)
T 1smk_A 72 AALTGMDLIIVPAGVPRK-PG-MTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLI-SNPVNS 130 (326)
T ss_dssp HHHTTCSEEEECCCCCCC-SS-CCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEC-CSSHHH
T ss_pred HHcCCCCEEEEcCCcCCC-CC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE-CCchHH
Confidence 356899999999985321 11 122221000 112235555655 655555554 899988
No 48
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=29.69 E-value=36 Score=29.32 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCEEEEEecCCCcccccCCCCCCCCCCChH-HHHHHHhh-CCCEEEEEecCcceeccccccccceeE
Q 045895 36 NFDYAIVAVGEAPYAETAGDSMTLTMLDPDP-SVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALV 101 (194)
Q Consensus 36 ~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~-~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail 101 (194)
+-|+||+..|-+..... ....+.|+.+.- ++.+.+.+ +.|+++|+ ++-|.+..+...+.+++
T Consensus 273 ~Pd~ivvsaG~D~~~~D--plg~~~lt~~~~~~~~~~l~~~~~~~v~vl--eGGY~~~~l~~~~~~~l 336 (341)
T 3q9b_A 273 GAEAIVVSLGVDTFEQD--PISFFKLTSPDYITMGRTIAASGVPLLVVM--EGGYGVPEIGLNVANVL 336 (341)
T ss_dssp TCSCEEEEECCTTBTTC--TTCCCBBCTTHHHHHHHHHHTTSSCEEEEE--CCCCCCTTHHHHHHHHH
T ss_pred CCCEEEEeCCccccCCC--CCCCccCCHHHHHHHHHHHHHhCCCEEEEE--CCCCChHHHHHHHHHHH
Confidence 56999999997652221 345677776544 45666666 77887765 55588765544444433
No 49
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=29.40 E-value=48 Score=27.73 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=31.6
Q ss_pred hhcCCCCEEEEEecCCCcccc---cCCCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceeccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAET---AGDSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEP 92 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~---~gdr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~ 92 (194)
.++++||+||+++|....... |+.|.++ -.. -+++.+++.+ +++.++++. .||.++.-
T Consensus 68 ~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl--~~~n~~i~~~i~~~i~~~~p~a~iiv~-tNP~~~~t 133 (322)
T 1t2d_A 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDL--LPLNNKIMIEIGGHIKKNCPNAFIIVV-TNPVDVMV 133 (322)
T ss_dssp GGGTTCSEEEECCSCSSCTTCCSTTCCGGGG--HHHHHHHHHHHHHHHHHHCTTSEEEEC-SSSHHHHH
T ss_pred HHhCCCCEEEEeCCCCCCCCCCcccccHHHH--HHHHHHHHHHHHHHHHHHCCCeEEEEe-cCChHHHH
Confidence 457899999999985321010 0012221 111 1234455555 666666665 88998753
No 50
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=29.35 E-value=18 Score=29.92 Aligned_cols=54 Identities=15% Similarity=0.379 Sum_probs=27.6
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
.++++||+||+++|... ..| .|.++ -... +++++++.+ +++.++++. .||.++.
T Consensus 63 ~a~~~aDvVIi~~~~~~---~~g~~r~dl--~~~n~~i~~~i~~~i~~~~p~~~vi~~-tNP~~~~ 122 (304)
T 2v6b_A 63 SELADAQVVILTAGANQ---KPGESRLDL--LEKNADIFRELVPQITRAAPDAVLLVT-SNPVDLL 122 (304)
T ss_dssp GGGTTCSEEEECC---------------C--HHHHHHHHHHHHHHHHHHCSSSEEEEC-SSSHHHH
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHhHHHHHHHHHHHHHHhCCCeEEEEe-cCchHHH
Confidence 45789999999997532 111 33332 1111 234455555 666666554 8899874
No 51
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=28.56 E-value=8.3 Score=32.68 Aligned_cols=58 Identities=14% Similarity=0.352 Sum_probs=30.7
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCC--CChHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTML--DPDPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~--~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.++++||+||+..|... ..| +|.++-.- +--+++++++.+ +++.+++++ .||+++.-+
T Consensus 72 ~a~~~aDvVii~ag~~~---k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~-tNPv~~~t~ 133 (326)
T 2zqz_A 72 SDAKDADLVVITAGAPQ---KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA-ANPVDILTY 133 (326)
T ss_dssp GGGGGCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-CCcHHHHHH
Confidence 45789999999998532 111 22221000 001123444555 666666665 999988544
No 52
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=28.53 E-value=66 Score=26.62 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=30.2
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
.++++|+||++++... .+| +..+++-.. -+++++++.+ +++.++++. .||.++.
T Consensus 64 ~~~~aDvViiav~~~~---~~g-~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~-tNp~~~~ 122 (319)
T 1a5z_A 64 DLKGSDVVIVAAGVPQ---KPG-ETRLQLLGRNARVMKEIARNVSKYAPDSIVIVV-TNPVDVL 122 (319)
T ss_dssp GGTTCSEEEECCCCCC---CSS-CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC-SSSHHHH
T ss_pred HhCCCCEEEEccCCCC---CCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-CCcHHHH
Confidence 4678999999998632 111 111111110 1345555655 666666555 8898874
No 53
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=28.37 E-value=39 Score=27.46 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=31.2
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-----------------hCCCEEEEEecCcc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-----------------EAVKCVVIIISGRP 87 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-----------------~~~~vVvVl~~g~P 87 (194)
++.+||.+|++.=. -...+|..=+.+|+.+. ++|+++++..+|+|
T Consensus 90 ~l~~AD~IV~~~P~----------y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 90 KLEAADLVIFQFPL----------QWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp HHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred HHHhCCEEEEECch----------hhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 46789999998732 24555666666777652 26788888888887
No 54
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=28.37 E-value=30 Score=29.09 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=32.2
Q ss_pred hcCCCCEEEEEecCCCc--ccccC-CCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 33 KSNNFDYAIVAVGEAPY--AETAG-DSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~--~e~~g-dr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
++++||+||+++|.... .+..| .| +.+-.. -+++.+++.+ +++.++++. .+|.++.-.
T Consensus 75 a~~~aDiVi~a~g~p~~~g~~~~~~~r--~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~-tNP~~~~t~ 140 (331)
T 1pzg_A 75 ALTGADCVIVTAGLTKVPGKPDSEWSR--NDLLPFNSKIIREIGQNIKKYCPKTFIIVV-TNPLDCMVK 140 (331)
T ss_dssp HHTTCSEEEECCSCSSCTTCCGGGCCG--GGGHHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHH
T ss_pred HhCCCCEEEEccCCCCCCCcccCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCcEEEEE-cCchHHHHH
Confidence 56899999999975321 00000 12 222111 2235555666 666666655 999987533
No 55
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=27.88 E-value=59 Score=24.35 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=25.0
Q ss_pred cCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 34 SNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 34 a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
...+|++|+++-.. + .+...+.++++.+.. +.|+|+|++
T Consensus 113 ~~~~d~vi~v~d~~----------~-~~~~~~~~~~~~l~~~~~p~i~v~n 152 (223)
T 4dhe_A 113 RPQLCGMILMMDAR----------R-PLTELDRRMIEWFAPTGKPIHSLLT 152 (223)
T ss_dssp CTTEEEEEEEEETT----------S-CCCHHHHHHHHHHGGGCCCEEEEEE
T ss_pred CcCcCEEEEEEeCC----------C-CCCHHHHHHHHHHHhcCCCEEEEEe
Confidence 34578888887421 1 123345567777776 789888876
No 56
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=27.44 E-value=71 Score=26.29 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=29.2
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCC----hHHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDP----DPSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~----q~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
.++++|+||++++... ...+.|.+ |-.. -+++.+++.+ +++.++++. .+|.+..
T Consensus 66 ~l~~aDvViiav~~p~--~~g~~r~d--l~~~n~~i~~~i~~~i~~~~~~~~viv~-tNP~~~~ 124 (310)
T 1guz_A 66 DTANSDIVIITAGLPR--KPGMTRED--LLMKNAGIVKEVTDNIMKHSKNPIIIVV-SNPLDIM 124 (310)
T ss_dssp GGTTCSEEEECCSCCC--CTTCCHHH--HHHHHHHHHHHHHHHHHHHCSSCEEEEC-CSSHHHH
T ss_pred HHCCCCEEEEeCCCCC--CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCchHHH
Confidence 3689999999998532 11111211 1000 1234455555 556666555 8898774
No 57
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=27.38 E-value=54 Score=22.24 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=20.9
Q ss_pred CChHHHHHHHhh-CCCEEEEEecCcce
Q 045895 63 DPDPSVITNVCE-AVKCVVIIISGRPI 88 (194)
Q Consensus 63 ~~q~~li~~l~~-~~~vVvVl~~g~P~ 88 (194)
.-|+.+++.+.+ +.||.+.+.+|-.+
T Consensus 10 nlQd~fLn~lrk~~~~Vtv~L~nG~~l 36 (78)
T 3ahu_A 10 NIQDQFLNQIRKENTYVTVFLLNGFQL 36 (78)
T ss_dssp CHHHHHHHHHHHHTCCEEEEETTSCEE
T ss_pred ChHHHHHHHHHHcCCcEEEEEeCCeEE
Confidence 358889999988 88998888877554
No 58
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.27 E-value=1.4e+02 Score=19.80 Aligned_cols=100 Identities=8% Similarity=-0.062 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCcEEEEecCCChhhhh--cCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-----CCCEEE
Q 045895 8 LGAIRSAVDSSTEVVYRDNPDSDFVK--SNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-----AVKCVV 80 (194)
Q Consensus 8 ~~~l~~~~~~~~~v~~~~~~~~~~~~--a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-----~~~vVv 80 (194)
.+.++..+..+.++.......++... ....|++|+-..-. .....++++.+.+ +.|+|+
T Consensus 17 ~~~l~~~l~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~--------------~~~g~~~~~~l~~~~~~~~~pii~ 82 (133)
T 3nhm_A 17 RETLRLLLSGEFDCTTAADGASGLQQALAHPPDVLISDVNMD--------------GMDGYALCGHFRSEPTLKHIPVIF 82 (133)
T ss_dssp HHHHHHHHTTTSEEEEESSHHHHHHHHHHSCCSEEEECSSCS--------------SSCHHHHHHHHHHSTTTTTCCEEE
T ss_pred HHHHHHHHhCCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCC--------------CCCHHHHHHHHHhCCccCCCCEEE
Confidence 35555555444455544333333222 34678888754321 0124567888765 235555
Q ss_pred EEecCcceeccccccccceeEEccCCCch-HHHHHHHHcCCC
Q 045895 81 IIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDVLFGDY 121 (194)
Q Consensus 81 Vl~~g~P~~l~~~~~~~~Ail~a~~pG~~-g~AlAdvL~G~~ 121 (194)
+.-...+.........++.++.--..-.+ -.++-.+|.+..
T Consensus 83 ~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 83 VSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 54323333322223466777766555455 777777776654
No 59
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=25.61 E-value=40 Score=29.45 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.7
Q ss_pred HHHHhhcCCCcEEEEecCCCh----------hhhhcC---C--CCEEEEEecCC
Q 045895 9 GAIRSAVDSSTEVVYRDNPDS----------DFVKSN---N--FDYAIVAVGEA 47 (194)
Q Consensus 9 ~~l~~~~~~~~~v~~~~~~~~----------~~~~a~---~--aD~vIv~vg~~ 47 (194)
-||++.+.++.++..-+||.- +...++ + -|++|...|+.
T Consensus 48 ~Glr~LLP~~ieli~GPGCPVCVtp~~~ID~ai~LA~~~~~~~~~vi~~TfGDm 101 (372)
T 2z1d_A 48 HGIRSLLPENVKVVSGPGCPVCITPVEDIVAMQLIMRKAREEGEEIILTTFGDM 101 (372)
T ss_dssp TTHHHHSCTTEEEEECCCCTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECTTG
T ss_pred hCHHhhCCCCcEEecCCCCccEECcHHHHHHHHHHHhhhcccCCCeEEEecccc
Confidence 578888888778888888752 333333 3 69999999864
No 60
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=25.51 E-value=14 Score=32.16 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=30.7
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHH----HHHHHhh--CCCEEEEEecCcceecccc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPS----VITNVCE--AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~----li~~l~~--~~~vVvVl~~g~P~~l~~~ 93 (194)
....+++|+||++.|... ..| +|.+ |-..-.+ +.+++.+ +.+.++++. +||+++.-+
T Consensus 103 y~~~~daDvVVitag~pr---kpG~tR~D--Ll~~N~~I~k~i~~~i~~~a~p~~ivlVv-sNPvD~~t~ 166 (375)
T 7mdh_A 103 YEVFEDVDWALLIGAKPR---GPGMERAA--LLDINGQIFADQGKALNAVASKNVKVLVV-GNPCNTNAL 166 (375)
T ss_dssp HHHTTTCSEEEECCCCCC---CTTCCHHH--HHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHH
T ss_pred HHHhCCCCEEEEcCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCchhHHHH
Confidence 356789999999876432 111 2222 1111112 3334544 345666655 899987543
No 61
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Probab=25.44 E-value=14 Score=30.73 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=31.8
Q ss_pred hhcCCCCEEEEEecCCCcccccC-CCCCCCCC--CChHHHHHHHhh-CCCEEEEEecCcceecccc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAG-DSMTLTML--DPDPSVITNVCE-AVKCVVIIISGRPIVIEPY 93 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~--~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~ 93 (194)
.+++++|+||...|-.. ..| +|.++..- ..-+++++++.+ + +.++++. .||+++.-+
T Consensus 70 ~al~gaD~Vi~~Ag~~~---~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~-SNPv~~~t~ 130 (313)
T 1hye_A 70 RIIDESDVVIITSGVPR---KEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVI-TNPVDVMTY 130 (313)
T ss_dssp GGGTTCSEEEECCSCCC---CTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEC-SSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEe-cCcHHHHHH
Confidence 45789999999988532 111 22111000 011245666666 7 6666655 799987543
No 62
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=25.35 E-value=78 Score=23.64 Aligned_cols=45 Identities=11% Similarity=-0.136 Sum_probs=27.1
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-------hCCCEEEEEecCc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-------EAVKCVVIIISGR 86 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-------~~~~vVvVl~~g~ 86 (194)
..+.++|.+|++.-. + ...+|+.=+.+++.+. ++++++++...|+
T Consensus 48 ~~l~~aD~ii~gsP~--y--------~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 48 EDVLWADGLAVGSPT--N--------MGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp HHHHHCSEEEEEEEC--B--------TTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred HHHHhCCEEEEEeCc--c--------CCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 345678999998732 1 2345665666788764 2566666555343
No 63
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=25.32 E-value=61 Score=22.20 Aligned_cols=25 Identities=8% Similarity=0.250 Sum_probs=20.3
Q ss_pred ChHHHHHHHhh-CCCEEEEEecCcce
Q 045895 64 PDPSVITNVCE-AVKCVVIIISGRPI 88 (194)
Q Consensus 64 ~q~~li~~l~~-~~~vVvVl~~g~P~ 88 (194)
-|+.+++.+.+ +.||.+.+.+|-.+
T Consensus 7 lQd~fLn~lrk~~~~Vtv~L~NG~~l 32 (82)
T 1u1s_A 7 LQDPYLNTLRKERVPVSIYLVNGIKL 32 (82)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSCEE
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCcEE
Confidence 48889999988 78998888877554
No 64
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=25.02 E-value=92 Score=23.07 Aligned_cols=47 Identities=9% Similarity=-0.039 Sum_probs=28.3
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh--------hCCCEEEEEecCcc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC--------EAVKCVVIIISGRP 87 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~--------~~~~vVvVl~~g~P 87 (194)
...+.++|.+|++.-. + ...+|..=+.+|+.+. ++++++++...|.+
T Consensus 66 ~~~l~~aD~ii~gsP~--y--------~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~ 120 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPT--R--------FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASL 120 (200)
T ss_dssp HHHHHTCSEEEEEEEC--B--------TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCS
T ss_pred HHHHHHCCEEEEEcCh--h--------ccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCC
Confidence 3456789999998732 1 2344555556777652 35677666655544
No 65
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=24.84 E-value=27 Score=28.79 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=29.2
Q ss_pred hhcCCCCEEEEEecCCCcc-cccC-CCCCCCCCCCh----HHHHHHHhh-CCCEEEEEecCcceecc
Q 045895 32 VKSNNFDYAIVAVGEAPYA-ETAG-DSMTLTMLDPD----PSVITNVCE-AVKCVVIIISGRPIVIE 91 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~-e~~g-dr~~l~l~~~q----~~li~~l~~-~~~vVvVl~~g~P~~l~ 91 (194)
..++++|+||++++..... ...| .|.+ +-... +++++++.+ +++.++++. .+|.++.
T Consensus 65 ~~~~~aDvViiav~~~~~~~~~~g~~r~~--l~~~n~~i~~~i~~~i~~~~~~~~ii~~-tNp~~~~ 128 (309)
T 1hyh_A 65 AALADADVVISTLGNIKLQQDNPTGDRFA--ELKFTSSMVQSVGTNLKESGFHGVLVVI-SNPVDVI 128 (309)
T ss_dssp GGGTTCSEEEECCSCGGGTC-------CT--THHHHHHHHHHHHHHHHHTTCCSEEEEC-SSSHHHH
T ss_pred HHhCCCCEEEEecCCcccCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCcEEEEE-cCcHHHH
Confidence 3567899999999853200 0011 2222 11111 245555655 455555554 8898874
No 66
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=24.62 E-value=95 Score=24.66 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=24.9
Q ss_pred CCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCCEEEEEe
Q 045895 36 NFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVVIII 83 (194)
Q Consensus 36 ~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~vVvVl~ 83 (194)
.+|++++++-.. .-.+.....++++.+..+.|+|+|++
T Consensus 115 r~~~~l~~i~~~----------~~~~~~~d~~~l~~l~~~~pvi~V~n 152 (274)
T 3t5d_A 115 RVQCCLYFIAPS----------GHGLKPLDIEFMKRLHEKVNIIPLIA 152 (274)
T ss_dssp CCCEEEEEECSC----------CSSCCHHHHHHHHHHTTTSCEEEEES
T ss_pred ceeEEEEEecCC----------CCCCCHHHHHHHHHHhccCCEEEEEe
Confidence 367888888421 11234445667888877789988876
No 67
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=24.50 E-value=46 Score=25.82 Aligned_cols=48 Identities=10% Similarity=-0.019 Sum_probs=32.5
Q ss_pred hhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-------------hCCCEEEEEecCcce
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-------------EAVKCVVIIISGRPI 88 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-------------~~~~vVvVl~~g~P~ 88 (194)
..++++||.+|+..=. -..++|..-+.+|+++. ++|+++++..+|+|-
T Consensus 53 ~~~l~~AD~iv~~~P~----------y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~ 113 (192)
T 3f2v_A 53 QKLIETHDSLVWQFPI----------YWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPA 113 (192)
T ss_dssp HHHHHTSSSEEEEEEC----------BTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCG
T ss_pred HHHHHhCCEEEEEcCh----------hhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCCh
Confidence 3567899999998621 24556666666777762 257788777778773
No 68
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.50 E-value=1.6e+02 Score=19.72 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=32.7
Q ss_pred hHHHHHHHhh-C--CCEEEEEecCcceeccc-cccccceeEEccCCCch-HHHHHHHHcCCCCC
Q 045895 65 DPSVITNVCE-A--VKCVVIIISGRPIVIEP-YISSVDALVAAWLPGTE-GQGVTDVLFGDYGF 123 (194)
Q Consensus 65 q~~li~~l~~-~--~~vVvVl~~g~P~~l~~-~~~~~~Ail~a~~pG~~-g~AlAdvL~G~~nP 123 (194)
..++++.+.+ . .|+|++.-...+-.... +...++.+|.--..-.+ ..++-.++.|....
T Consensus 67 g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~~ 130 (136)
T 3kto_A 67 GIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKEG 130 (136)
T ss_dssp HHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCCC
Confidence 3568888876 3 46665543333322212 23467777776555555 77777777776433
No 69
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=24.40 E-value=2.1e+02 Score=21.13 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCCcEEEEecCCChhhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-C--CCEEEEEe
Q 045895 7 ILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-A--VKCVVIII 83 (194)
Q Consensus 7 ~~~~l~~~~~~~~~v~~~~~~~~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~--~~vVvVl~ 83 (194)
..+++++.+.....+.......++...+...|++|+-+.-. + ....++++.+.+ . .|+|++..
T Consensus 14 ~~~~l~~~L~~~~~v~~~~~~~~al~~~~~~dlvllD~~lp-------~-------~~g~~~~~~lr~~~~~~~ii~lt~ 79 (220)
T 1p2f_A 14 ILKKVSEKLQQLGRVKTFLTGEDFLNDEEAFHVVVLDVMLP-------D-------YSGYEICRMIKETRPETWVILLTL 79 (220)
T ss_dssp HHHHHHHHHTTTEEEEEESSHHHHHHCCSCCSEEEEESBCS-------S-------SBHHHHHHHHHHHCTTSEEEEEES
T ss_pred HHHHHHHHHHhCCCEEEECCHHHHHHhcCCCCEEEEeCCCC-------C-------CCHHHHHHHHHhcCCCCcEEEEEc
Confidence 34566665543224443333333333346678888765321 0 123467888765 3 45555443
Q ss_pred cCcceecccc-ccccceeEEccCCCch-HHHHHHHHcCCC
Q 045895 84 SGRPIVIEPY-ISSVDALVAAWLPGTE-GQGVTDVLFGDY 121 (194)
Q Consensus 84 ~g~P~~l~~~-~~~~~Ail~a~~pG~~-g~AlAdvL~G~~ 121 (194)
...+-..... ...++.++.--..-.+ ..++-.++.|..
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 119 (220)
T 1p2f_A 80 LSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (220)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 2322222111 2467777776555556 788888888864
No 70
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=24.03 E-value=65 Score=24.47 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=22.3
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC 73 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~ 73 (194)
.+.++||.+|++.=. -+..+|+.-+.+|+.+.
T Consensus 63 ~~i~~AD~iV~~sP~----------y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 63 EEVQEADAIWIFSPV----------YNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp HHHHHCSEEEEECCC----------BTTBCCHHHHHHHHHHT
T ss_pred HHHHhCCEEEEECcc----------cccCCCHHHHHHHHHhh
Confidence 456789999997621 24566777777777775
No 71
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=23.99 E-value=73 Score=21.24 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=21.1
Q ss_pred ChHHHHHHHhh-CCCEEEEEecCccee
Q 045895 64 PDPSVITNVCE-AVKCVVIIISGRPIV 89 (194)
Q Consensus 64 ~q~~li~~l~~-~~~vVvVl~~g~P~~ 89 (194)
-|+.+++.+.+ +.||.+.+.+|-++.
T Consensus 9 lQd~~L~~lrk~k~~Vti~L~nG~~l~ 35 (74)
T 2ylb_A 9 LQDPFLNALRRERVPVSIYLVNGIKLQ 35 (74)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTSCEEE
T ss_pred cHHHHHHHHHhcCCcEEEEEeCCCEEE
Confidence 58889999988 889988888776653
No 72
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=23.43 E-value=32 Score=29.88 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=40.2
Q ss_pred CCCEEEEEecCCCcccccCCCCCCCCCCChH-HHHHHHhh-CCCEEEEEecCcceeccccccccceeEEc
Q 045895 36 NFDYAIVAVGEAPYAETAGDSMTLTMLDPDP-SVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAA 103 (194)
Q Consensus 36 ~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~-~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a 103 (194)
+-|+||+..|-+..... ....+.|+.+.- ++.+.+.+ +.|+|+|+ ++-|.+..+...+.++|.+
T Consensus 291 ~PdlIvvsaG~Da~~~D--plg~l~lt~~~~~~~~~~l~~~~~~~v~vl--eGGY~~~~l~~~~~a~l~~ 356 (362)
T 3men_A 291 APDALVLSLGFDVYRDD--PQSQVAVTTDGFGRLGHLIGALRLPTVIVQ--EGGYHIESLEANARSFFGG 356 (362)
T ss_dssp CCSEEEEEECSTTBTTC--TTCCBCBCHHHHHHHHHHHHTTCCCEEEEE--CCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECcccCcCCC--CCCCccCCHHHHHHHHHHHHhhCCCEEEEE--CCCCCHHHHHHHHHHHHHH
Confidence 56999999997642221 345667765443 45666666 77888776 5568876555555544433
No 73
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=22.57 E-value=1.6e+02 Score=23.30 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=27.7
Q ss_pred cccce-eEEccCCCch-HHHHHHHHcCCCCCCCCcceeecCCCCCCC
Q 045895 95 SSVDA-LVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFKTVDQLP 139 (194)
Q Consensus 95 ~~~~A-il~a~~pG~~-g~AlAdvL~G~~nPsGkLPvT~p~~~~~~p 139 (194)
.+++- ++.+. |.. .+++.++|.| ++-.+|.++-..-.+.|
T Consensus 184 ~~A~~i~ll~~--G~~Ka~av~~~l~g---~~~~~Pas~l~~h~~~~ 225 (232)
T 3lhi_A 184 AHTGHVFLAIQ--GEEKKAVFDQAAQG---ENREYPISLVLNHQGVN 225 (232)
T ss_dssp HTCSEEEEEEE--SHHHHHHHHHHHTS---CCTTSTHHHHHTSTTCC
T ss_pred HhcCeEEEEEE--CHHHHHHHHHHHhC---CCccCcHHHHHhCCCCC
Confidence 35554 44455 888 9999999998 56679988765544333
No 74
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=22.18 E-value=40 Score=26.05 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=29.5
Q ss_pred hhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh----CCCEEEEEecCc
Q 045895 32 VKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE----AVKCVVIIISGR 86 (194)
Q Consensus 32 ~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~----~~~vVvVl~~g~ 86 (194)
.+.++||.+|++.=. -+..+|+.=+.+|+.+.. +||++++..+|.
T Consensus 81 ~~i~~AD~ivi~sP~----------Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~G~ 129 (191)
T 3k1y_A 81 SALSASDGLVVATPV----------FKASYTGLFKMFFDILDTDALTGMPTIIAATAGS 129 (191)
T ss_dssp HHHHHCSEEEEEEEC----------BTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEESS
T ss_pred HHHHHCCEEEEEcCc----------cCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeCCC
Confidence 456789999998732 245566666677877642 577776665443
No 75
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=21.75 E-value=79 Score=21.42 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=21.2
Q ss_pred ChHHHHHHHhh-CCCEEEEEecCccee
Q 045895 64 PDPSVITNVCE-AVKCVVIIISGRPIV 89 (194)
Q Consensus 64 ~q~~li~~l~~-~~~vVvVl~~g~P~~ 89 (194)
-|+.++..+.+ +.||.+.+.+|-.+.
T Consensus 8 lQd~fLn~lrk~k~~VtI~LvnG~~L~ 34 (79)
T 3sb2_A 8 LQDPFLNALRKEHVPVSIYLVNGIKLQ 34 (79)
T ss_dssp THHHHHHHHHHTTCCEEEEETTSCEEE
T ss_pred hHHHHHHHHHhcCCeEEEEEeCCCEEE
Confidence 48889999998 789999888886653
No 76
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.52 E-value=28 Score=24.14 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=22.3
Q ss_pred HHHHHHHhh-CCCEEEEEecCcceeccccc
Q 045895 66 PSVITNVCE-AVKCVVIIISGRPIVIEPYI 94 (194)
Q Consensus 66 ~~li~~l~~-~~~vVvVl~~g~P~~l~~~~ 94 (194)
+++|+.... ++|+||.++..+.-+++++.
T Consensus 41 rdiiksmkdngkplvvfvngasqndvnefq 70 (112)
T 2lnd_A 41 RDIIKSMKDNGKPLVVFVNGASQNDVNEFQ 70 (112)
T ss_dssp HHHHHHHTTCCSCEEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEecCcccccHHHHH
Confidence 356777777 78999998877777777775
No 77
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=21.04 E-value=47 Score=26.11 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=29.3
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh--------hCCCEEEEEecCcc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC--------EAVKCVVIIISGRP 87 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~--------~~~~vVvVl~~g~P 87 (194)
++.+||.+|++.-. -...+|+.=+.+|+.+. ++++++++..+|.+
T Consensus 76 ~l~~AD~iI~~sP~----------y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~ 128 (242)
T 1sqs_A 76 ELLESDIIIISSPV----------YLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN 128 (242)
T ss_dssp HHHHCSEEEEEEEE----------CSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC
T ss_pred HHHHCCEEEEEccc----------cccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC
Confidence 46789999998732 23455666666777762 26777777665654
No 78
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=20.97 E-value=1.1e+02 Score=24.69 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=28.8
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCC--CChHHHHHHHhh-CCCEEEEEecCcceeccc
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTML--DPDPSVITNVCE-AVKCVVIIISGRPIVIEP 92 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~--~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~ 92 (194)
.++++|+||++++.... .. .+|.++-.. ..-+++++.+.+ +.+.+++.. .+|+....
T Consensus 72 ~~~~aD~Vii~v~~~~~-~g-~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~-~Np~~~~~ 131 (319)
T 1lld_A 72 ICRDADMVVITAGPRQK-PG-QSRLELVGATVNILKAIMPNLVKVAPNAIYMLI-TNPVDIAT 131 (319)
T ss_dssp GGTTCSEEEECCCCCCC-TT-CCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEEC-CSSHHHHH
T ss_pred HhCCCCEEEECCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe-cCchHHHH
Confidence 46789999999975321 10 011110000 000134555555 555555554 78887754
No 79
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=20.86 E-value=68 Score=25.34 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=29.0
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh-----------------hCCCEEEEEecCcce
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC-----------------EAVKCVVIIISGRPI 88 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~-----------------~~~~vVvVl~~g~P~ 88 (194)
++++||.+|++.=. -...+|..-+.+|+.+. ++|+++++..+|.|-
T Consensus 89 ~l~~aD~iv~~~P~----------y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~ 151 (228)
T 3tem_A 89 KVREADLVIFQFPL----------YWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTA 151 (228)
T ss_dssp HHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCT
T ss_pred HHHhCCEEEEECCh----------hhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCH
Confidence 46789999998732 13445555555666542 367777777777663
No 80
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=20.82 E-value=72 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.2
Q ss_pred ChHHHHHHHhh-CCCEEEEEecCcce
Q 045895 64 PDPSVITNVCE-AVKCVVIIISGRPI 88 (194)
Q Consensus 64 ~q~~li~~l~~-~~~vVvVl~~g~P~ 88 (194)
-|+.+++.+.+ +.||.+.+.+|-.+
T Consensus 7 lQd~fLn~lrk~k~~VtI~L~nG~~l 32 (77)
T 1kq1_A 7 IQDKALENFKANQTEVTVFFLNGFQM 32 (77)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTSCEE
T ss_pred cHHHHHHHHHhcCCeEEEEEeCCCEE
Confidence 47889999988 78998888877654
No 81
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=20.50 E-value=37 Score=26.95 Aligned_cols=21 Identities=29% Similarity=0.104 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCCCCCCccee
Q 045895 110 GQGVTDVLFGDYGFSGKLPRS 130 (194)
Q Consensus 110 g~AlAdvL~G~~nPsGkLPvT 130 (194)
..-+=+-+.|...|.|+||+|
T Consensus 40 l~rLyke~~G~spPkG~lPfS 60 (192)
T 2avu_E 40 LIKLYKELRGSPPPKGMLPFS 60 (192)
T ss_dssp HHHHHHHHSSSCCCCSCCCCC
T ss_pred HHHHHHHHhCCCCCCCCCCCc
Confidence 445667889999999999975
No 82
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=20.31 E-value=1.5e+02 Score=20.40 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=24.0
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhh-CCCEEEEEe
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCE-AVKCVVIII 83 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~-~~~vVvVl~ 83 (194)
..+.+|++|+++.... . +...+..+.+.+.. +.|+++|.+
T Consensus 76 ~~~~~~~~i~v~d~~~-------~----~~~~~~~~~~~~~~~~~p~ilv~n 116 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRA-------E----LTQADYEVAEYLRRKGKPVILVAT 116 (161)
T ss_dssp HTTTCSEEEEEEESSS-------C----CCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHhCCEEEEEEECCC-------c----ccHhHHHHHHHHHhcCCCEEEEEE
Confidence 3578999999884321 0 22223345555555 788888776
No 83
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=20.00 E-value=66 Score=25.32 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=29.5
Q ss_pred hcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHh------------------hCCCEEEEEecCcce
Q 045895 33 KSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVC------------------EAVKCVVIIISGRPI 88 (194)
Q Consensus 33 ~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~------------------~~~~vVvVl~~g~P~ 88 (194)
+.+.||.+|++.=. -+..+|..-+.+|+.+. ++|+++++..+|+++
T Consensus 91 ~~~~aD~iv~~~P~----------y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~ 154 (223)
T 3u7i_A 91 QFKSANTYVIVLPL----------HNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIY 154 (223)
T ss_dssp HHHHCSEEEEEEEC----------BTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCC
T ss_pred HHHhCCEEEEEcCh----------hhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCC
Confidence 45789999998732 24555666666676653 246677776667764
Done!