BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045896
         (520 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From
           Kribbella Flavida
 pdb|4H3V|B Chain B, Crystal Structure Of Oxidoreductase Domain Protein From
           Kribbella Flavida
          Length = 390

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 166 RELMIDSLISQTRHVEERELEPWIPDEDVP 195
           R+L+ D  I   RHV  + L+ WI D + P
Sbjct: 148 RKLVADGKIGTVRHVRAQYLQDWIADPEAP 177


>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
           Ammoniagenes
 pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
           Ammoniagenes
          Length = 338

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 110 LIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQ 165
           L +D +  G     EFV    +        +L++V+AKDV  TR   A ++Q+ K 
Sbjct: 272 LDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRTLLAQDVQAHKM 327


>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
           Corynebacterium Ammoniagenes
 pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
           Corynebacterium Ammoniagenes
          Length = 338

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 110 LIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQ 165
           L +D +  G     EFV    +        +L++V+AKDV  TR   A ++Q+ K 
Sbjct: 272 LDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRTLLAQDVQAHKM 327


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,092,163
Number of Sequences: 62578
Number of extensions: 574869
Number of successful extensions: 905
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 8
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)