BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045896
(520 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55DE7|ATX2_DICDI Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1
Length = 1103
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 130/243 (53%), Gaps = 31/243 (12%)
Query: 64 DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKD-----FGVILKMARLIKDGNFRG 118
++ ++++ L+G +V V +K G VY GI H TS +GV LKMAR KD N R
Sbjct: 83 ERTVFMSMSLVGQNVSVTLKNGDVYEGILHTTSTSTGSSGGGWGVALKMARK-KDTNNRV 141
Query: 119 QKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAV--TRDGFANELQSDKQRELMIDSLISQ 176
T+ P II + + +Q+ A V + RD F N D+Q + L
Sbjct: 142 ITTL-------PLPLVIIEAKDFLQITATGVVLDHYRDSFMNR---DQQSFITDTELSGF 191
Query: 177 TRHVEERELEPWIPDEDVPQLPELENIFDDPWNSK-----KWDQFETNETLFGVKTTFNE 231
+++EREL PW PD V E++ D NS+ WDQFETNE LFGV+TT+ E
Sbjct: 192 DGNLKERELTPWTPDPSV-----GESLDDFAANSEAKKPANWDQFETNEKLFGVRTTYEE 246
Query: 232 ELYTTKLLRGPQTEELEKEAA-RIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSS 290
E+YTT+L R + ++ + A + A+EI E + ++HL EERG E DEE R+SS
Sbjct: 247 EIYTTRLDRDSEFYKINQSVAEKKAQEIENEKSGNIHLLEERG--FVEGADYDEEERYSS 304
Query: 291 VYR 293
V R
Sbjct: 305 VVR 307
>sp|Q9USW1|YHZ3_SCHPO Uncharacterized protein C21B10.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21B10.03c PE=4 SV=1
Length = 791
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 87/136 (63%), Gaps = 12/136 (8%)
Query: 164 KQRELMIDSLISQTRHVE--ERELEPWIPDED---VPQLPELENIFDDPWNSKKWDQFET 218
+QR D IS + E +REL W+PD + VP L LE D+ +WDQF T
Sbjct: 97 QQRVWKTDVAISAEKRTETRQRELRRWMPDPEDAGVP-LAGLEESTDN----VEWDQFAT 151
Query: 219 NETLFGVKTTFNEELYTTKLLRG-PQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIH 277
NE LFGVK+ F+E+LYT+++ R P+ +E E+EA RIA+EI G T ++H+AEERG +
Sbjct: 152 NEKLFGVKSHFDEDLYTSRIDRSHPKYKEKEQEADRIAKEIEGTVTNNIHIAEERGLKV- 210
Query: 278 ENLGIDEETRFSSVYR 293
++ G+DEE +S V+R
Sbjct: 211 DDSGLDEEDLYSGVHR 226
>sp|P53297|PBP1_YEAST PAB1-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PBP1 PE=1 SV=1
Length = 722
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 129/259 (49%), Gaps = 40/259 (15%)
Query: 64 DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFG--VILKMARLIKDGNFRGQKT 121
D+ YL + IG V V V G Y G+ + + E G V+L+ R+ G
Sbjct: 50 DRQDYLLANSIGSDVTVTVTSGVKYTGLLVSCNLESTNGIDVVLRFPRVADSGVSDSVDD 109
Query: 122 VAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRD-----GFANEL--------------QS 162
+A+ + + +I ++ ++ K++ ++ D A E +S
Sbjct: 110 LAKTLGE----TLLIHGEDVAELELKNIDLSLDEKWENSKAQETTPARTNIEKERVNGES 165
Query: 163 DKQRELMIDSLISQT-RHVEERELEPWIPDE-----DVPQLPELENIFDDPWNSKKWDQF 216
++ + D IS + R ++ER+LE W P+E D+ + LE+ +S WDQF
Sbjct: 166 NEVTKFRTDVDISGSGREIKERKLEKWTPEEGAEHFDINKGKALED------DSASWDQF 219
Query: 217 ETNETLFGVKTTFNEELYTTKLLR-GPQTEELEKEAARIAREIAGEDTQ-DLHLAEERGS 274
NE FGVK+TF+E LYTTK+ + P + +EA RIA+EI + T ++H+AE+RG
Sbjct: 220 AVNEKKFGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQGTSGNIHIAEDRGI 279
Query: 275 SIHENLGIDEETRFSSVYR 293
I ++ G+DEE +S V R
Sbjct: 280 II-DDSGLDEEDLYSGVDR 297
>sp|Q29A33|ATX2_DROPS Ataxin-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Atx2
PE=3 SV=2
Length = 1121
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 37/186 (19%)
Query: 66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF 125
++ A+ L+G VEV ++ G++Y G+F S +F + L++ IK N + V
Sbjct: 72 FMHSATALVGSVVEVVLRSGNIYEGVFRTFSG--NFDIALELPACIKSKNLPEEGKVP-- 127
Query: 126 VSKPPSKNFIIPSSELVQVIAKDV---AVTRDGF-ANELQSDKQRELMIDSLISQTRHVE 181
K+ I P+ +V+++AKD T F +E SDK +D
Sbjct: 128 ------KHIIFPADTVVKIVAKDFDSQYATAGAFKTDEAISDKCNGARLD---------- 171
Query: 182 ERELEPWIP----DEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YT 235
E+ELEPW D D+ EL+ + W++ + F NE FGV +TF++ L YT
Sbjct: 172 EKELEPWDSGANGDIDI----ELDGAANG-WDANEM--FRKNENTFGVTSTFDDSLATYT 224
Query: 236 TKLLRG 241
L +G
Sbjct: 225 IPLDKG 230
>sp|Q8SWR8|ATX2_DROME Ataxin-2 homolog OS=Drosophila melanogaster GN=Atx2 PE=1 SV=1
Length = 1084
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 29/182 (15%)
Query: 66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF 125
++ A+ L+G VEV+++ G++Y G+F S +F + L++ IK N + V
Sbjct: 61 FMHSATALVGSVVEVRLRSGNIYEGVFRTFSG--NFDIALELPACIKSKNLPEEGKVP-- 116
Query: 126 VSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVEEREL 185
K+ I P+ +V ++AKD ++ A Q+D I + R +E+EL
Sbjct: 117 ------KHIIFPADTVVTIVAKDFD-SQYATAGAFQTDG----AISDKCNGAR-PDEKEL 164
Query: 186 EPWIP----DEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YTTKLL 239
EPW D D+ EL++ + W+ + F NE FGV +TF++ L YT L
Sbjct: 165 EPWDSGANGDIDI----ELDSAANG-WDPNEM--FRKNENTFGVTSTFDDSLASYTVPLD 217
Query: 240 RG 241
+G
Sbjct: 218 KG 219
>sp|O70305|ATX2_MOUSE Ataxin-2 OS=Mus musculus GN=Atxn2 PE=1 SV=1
Length = 1285
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 38/238 (15%)
Query: 65 KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAE 124
+++++ + ++G EVQVK G +Y G+F S + D + + + + ++ + E
Sbjct: 237 RMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIME 296
Query: 125 FVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE--E 182
V + S+ V V KD T +A +R+ DS +S + E E
Sbjct: 297 SV--------LFKCSDFVVVQFKD---TDSSYA-------RRDAFTDSALSAKVNGEHKE 338
Query: 183 RELEPW-----IPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YT 235
++LEPW E++ ELEN + W+ D F NE +GV +T++ L YT
Sbjct: 339 KDLEPWDAGELTASEEL----ELENDVSNGWDPN--DMFRYNEENYGVVSTYDSSLSSYT 392
Query: 236 TKLLRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYR 293
L R +EE K AR A ++A E A+ + EN EE ++++V R
Sbjct: 393 VPLERD-NSEEFLKREAR-ANQLAEEIESS---AQYKARVALENDDRSEEEKYTAVQR 445
>sp|Q99700|ATX2_HUMAN Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2
Length = 1313
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 38/258 (14%)
Query: 65 KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAE 124
+++++ + ++G EVQVK G +Y G+F S + D ++L A + G K E
Sbjct: 267 RMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCD--LVLDAAHEKSTESSSGPKR-EE 323
Query: 125 FVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE--E 182
+ ++ + S+ V V KD+ S +R+ DS IS + E E
Sbjct: 324 IM-----ESILFKCSDFVVVQFKDMD----------SSYAKRDAFTDSAISAKVNGEHKE 368
Query: 183 RELEPWIPDEDVP--QLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YTTKL 238
++LEPW E +L LEN + W+ D F NE +GV +T++ L YT L
Sbjct: 369 KDLEPWDAGELTANEELEALENDVSNGWDPN--DMFRYNEENYGVVSTYDSSLSSYTVPL 426
Query: 239 LRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFD 298
R +EE K AR A ++A E A+ + EN EE ++++V R +
Sbjct: 427 ERD-NSEEFLKREAR-ANQLAEEIESS---AQYKARVALENDDRSEEEKYTAVQRNS--- 478
Query: 299 DSGYEEDEDIVLNTHNNE 316
E E +NT N+
Sbjct: 479 ----SEREGHSINTRENK 492
>sp|Q7TQH0|ATX2L_MOUSE Ataxin-2-like protein OS=Mus musculus GN=Atxn2l PE=1 SV=1
Length = 1049
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 130/307 (42%), Gaps = 56/307 (18%)
Query: 12 STANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCA--------VSSH 63
+ A G G RRG + L + + GSV G +G V ++
Sbjct: 62 AAAAGSGLRRGAE---SILAASAPPQHQERPGAVAIGSVRGQTTGKGPPQSPVFEGVYNN 118
Query: 64 DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD-GNFRGQKTV 122
++L+ + ++G + +V+VK G+ Y GIF S + + V + + G R + V
Sbjct: 119 SRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIV 178
Query: 123 AEFVSKPPSKNFIIPSSELVQVIAKDV---AVTRDGFANELQSDKQRELMIDSLISQTRH 179
V KP S+++ V ++V T+D F DS I+
Sbjct: 179 DTMVFKP---------SDVLLVHFRNVDFNYATKDKF-------------TDSAIAMNSK 216
Query: 180 V----EERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL-- 233
V +E+ L+ W + +LE+ + W+ + F+ NE +GVKTT++ L
Sbjct: 217 VNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGWDPN--EMFKFNEENYGVKTTYDSSLSS 274
Query: 234 YTTKLLRGPQTEEL---EKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSS 290
YT L + +EE E AA++AREI L +A E + G EE + S+
Sbjct: 275 YTVPLEKD-NSEEFRQRELRAAQLAREIESSPQYRLRIAME------NDDGRTEEEKHSA 327
Query: 291 VYR-GTG 296
V R G+G
Sbjct: 328 VQRQGSG 334
>sp|Q8WWM7|ATX2L_HUMAN Ataxin-2-like protein OS=Homo sapiens GN=ATXN2L PE=1 SV=2
Length = 1075
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 45/251 (17%)
Query: 60 VSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD-GNFRG 118
V ++ ++L+ + ++G + +V+VK G+ Y GIF S + + V + + G R
Sbjct: 117 VYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRR 176
Query: 119 QKTVAEFVSKPPSKNFIIPSSELVQVIAKDV---AVTRDGFANELQSDKQRELMIDSLIS 175
+ V V KP S+++ V ++V T+D F DS I+
Sbjct: 177 EDIVDTMVFKP---------SDVMLVHFRNVDFNYATKDKF-------------TDSAIA 214
Query: 176 QTRHV----EERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNE 231
V +E+ L+ W + +LE+ + W+ + F+ NE +GVKTT++
Sbjct: 215 MNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGWDPN--EMFKFNEENYGVKTTYDS 272
Query: 232 EL--YTTKLLRGPQTEEL---EKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEET 286
L YT L + +EE E AA++AREI L +A E + G EE
Sbjct: 273 SLSSYTVPLEKD-NSEEFRQRELRAAQLAREIESSPQYRLRIAME------NDDGRTEEE 325
Query: 287 RFSSVYR-GTG 296
+ S+V R G+G
Sbjct: 326 KHSAVQRQGSG 336
>sp|Q6FE23|SYP_ACIAD Proline--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=proS
PE=3 SV=1
Length = 570
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 326 DQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQ 385
D+I F + +S + + SF VD+A ++ D YC R F+ L + R
Sbjct: 141 DEIRPRFGVMRSREFIMKDAYSFHVDQASLQETYDNMYDTYC-----RIFTRLGLDFRPV 195
Query: 386 ENLLGECGGNNDAKDFVEKQPLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYSTS 445
+ G GG+ + V +D S +S + N EKA + VG A P
Sbjct: 196 QADTGSIGGSGSHEFHVLADSGEDDIVF--STESDYAANVEKAEAVLVGE--RAAPAQAL 251
Query: 446 HVLSKGNEKT 455
++ N+KT
Sbjct: 252 SIVDTPNQKT 261
>sp|Q8YZI3|MURG_NOSS1 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=murG PE=3 SV=2
Length = 357
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 99 KDFGVILKMARLIKDGNFRGQKTVAEFVSKP 129
K G ILK+ RL+K GNF+G T +++ P
Sbjct: 76 KLIGSILKVRRLLKQGNFQGVVTTGGYIAGP 106
>sp|Q7N6B7|MUKB_PHOLL Chromosome partition protein MukB OS=Photorhabdus luminescens
subsp. laumondii (strain TT01) GN=mukB PE=3 SV=1
Length = 1482
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 241 GPQTEELEKEAARIAREIAGEDTQDLHLAEERG----SSIHENLGIDEETRFSSVY 292
Q ELEK+ R+++ ED++ + LAE G S I++++ ID+ FS++Y
Sbjct: 650 AAQKRELEKQIERLSQPSGAEDSRMIALAERFGGVLLSEIYDDITIDDAPYFSALY 705
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,391,593
Number of Sequences: 539616
Number of extensions: 8908550
Number of successful extensions: 22960
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 22467
Number of HSP's gapped (non-prelim): 475
length of query: 520
length of database: 191,569,459
effective HSP length: 122
effective length of query: 398
effective length of database: 125,736,307
effective search space: 50043050186
effective search space used: 50043050186
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)