Your job contains 1 sequence.
>045898
MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045898
(49 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025732 - symbol:RAE1 "AT1G80670" species:3702... 178 3.3e-13 1
TAIR|locus:2036159 - symbol:AT1G15850 "AT1G15850" species... 150 9.4e-11 1
DICTYBASE|DDB_G0283835 - symbol:rae1 "putative mRNA expor... 124 2.8e-07 1
POMBASE|SPBC16A3.05c - symbol:rae1 "RNA export factor, nu... 124 2.9e-07 1
UNIPROTKB|E1BVV3 - symbol:Gga.22300 "Uncharacterized prot... 114 1.1e-06 1
UNIPROTKB|Q7ZZY7 - symbol:Rae1/Gle2 "Rae1/Gle2" species:8... 115 3.1e-06 1
UNIPROTKB|E1C7F8 - symbol:Gga.22300 "Uncharacterized prot... 114 3.9e-06 1
UNIPROTKB|B0QZ36 - symbol:RAE1 "mRNA export factor" speci... 101 1.5e-05 1
UNIPROTKB|B0QZ37 - symbol:RAE1 "mRNA export factor" speci... 101 1.5e-05 1
UNIPROTKB|P78406 - symbol:RAE1 "mRNA export factor" speci... 101 0.00010 1
ZFIN|ZDB-GENE-040426-1029 - symbol:rae1 "RAE1 RNA export ... 100 0.00013 1
UNIPROTKB|E2RSV2 - symbol:RAE1 "Uncharacterized protein" ... 98 0.00021 1
UNIPROTKB|Q5E9A4 - symbol:RAE1 "mRNA export factor" speci... 97 0.00027 1
UNIPROTKB|A5GFN6 - symbol:RAE1 "mRNA export factor" speci... 97 0.00027 1
MGI|MGI:1913929 - symbol:Rae1 "RAE1 RNA export 1 homolog ... 97 0.00027 1
RGD|1311540 - symbol:Rae1 "RAE1 RNA export 1 homolog (S. ... 97 0.00027 1
>TAIR|locus:2025732 [details] [associations]
symbol:RAE1 "AT1G80670" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005635
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 EMBL:AC011713 EMBL:U53501
GO:GO:0080008 HOGENOM:HOG000208823 KO:K14298 OMA:RVAIQYV
EMBL:AY087683 IPI:IPI00547787 PIR:A96839 PIR:S71241
RefSeq:NP_178182.1 UniGene:At.24472 ProteinModelPortal:Q38942
SMR:Q38942 IntAct:Q38942 STRING:Q38942 PaxDb:Q38942 PRIDE:Q38942
EnsemblPlants:AT1G80670.1 GeneID:844406 KEGG:ath:AT1G80670
GeneFarm:2856 TAIR:At1g80670 InParanoid:Q38942 PhylomeDB:Q38942
ProtClustDB:CLSN2681924 Genevestigator:Q38942 GermOnline:AT1G80670
Uniprot:Q38942
Length = 349
Score = 178 (67.7 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 36/49 (73%), Positives = 41/49 (83%)
Query: 1 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
MATFGA A A N NPNKS EV+ P+DS+SSL FSP+A+ILVATSWDNQ
Sbjct: 1 MATFGAPATA-NSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQ 48
>TAIR|locus:2036159 [details] [associations]
symbol:AT1G15850 "AT1G15850" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 eggNOG:COG2319 EMBL:AC034256
KO:K14298 IPI:IPI00536865 PIR:H86292 RefSeq:NP_173037.1
UniGene:At.51625 ProteinModelPortal:Q9LMQ0 SMR:Q9LMQ0 STRING:Q9LMQ0
PRIDE:Q9LMQ0 EnsemblPlants:AT1G15850.1 GeneID:838155
KEGG:ath:AT1G15850 TAIR:At1g15850 InParanoid:Q9LMQ0 OMA:QSTTETM
PhylomeDB:Q9LMQ0 Genevestigator:Q9LMQ0 Uniprot:Q9LMQ0
Length = 140
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 1 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
M+T G A ++ NPN S E++ P +DS+SSL FSPKA+ILVATSWD Q
Sbjct: 1 MSTSGDKATSSTNNPNNSYEITPPATDSISSLSFSPKADILVATSWDCQ 49
>DICTYBASE|DDB_G0283835 [details] [associations]
symbol:rae1 "putative mRNA export protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 dictyBase:DDB_G0283835 GO:GO:0005634
GO:GO:0045335 GenomeReviews:CM000153_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0003723 EMBL:AAFI02000057 GO:GO:0016973 KO:K14298 OMA:RVAIQYV
RefSeq:XP_638901.1 ProteinModelPortal:Q54QH0 STRING:Q54QH0
PRIDE:Q54QH0 EnsemblProtists:DDB0237902 GeneID:8624298
KEGG:ddi:DDB_G0283835 Uniprot:Q54QH0
Length = 342
Score = 124 (48.7 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 8 AVATNQNPNKSIEVSQPPSDSVSSLCFSPKAN-ILVATSWDNQ 49
+ +T NPN IE+S PPSD VS L FSPKAN +VA SWD +
Sbjct: 3 STSTTTNPNNDIELSSPPSDGVSCLKFSPKANNFIVAGSWDQK 45
>POMBASE|SPBC16A3.05c [details] [associations]
symbol:rae1 "RNA export factor, nucleoporin Rae1"
species:4896 "Schizosaccharomyces pombe" [GO:0000054 "ribosomal
subunit export from nucleus" evidence=ISO] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005643 "nuclear pore" evidence=ISO;IDA] [GO:0006606 "protein
import into nucleus" evidence=TAS] [GO:0010389 "regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IMP] [GO:0007094
"mitotic spindle assembly checkpoint" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
PomBase:SPBC16A3.05c Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 EMBL:CU329671 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0005643 GenomeReviews:CU329671_GR
GO:GO:0006606 GO:GO:0010389 GO:GO:0016973 HOGENOM:HOG000208823
KO:K14298 OMA:RCITCAP OrthoDB:EOG4C5GT5 GO:GO:0000054 EMBL:U14951
PIR:A56119 RefSeq:NP_596784.1 ProteinModelPortal:P41838
DIP:DIP-59117N STRING:P41838 PRIDE:P41838
EnsemblFungi:SPBC16A3.05c.1 GeneID:2539741 KEGG:spo:SPBC16A3.05c
NextBio:20800892 Uniprot:P41838
Length = 352
Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 1 MATFGAAAVATNQNPN----KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
M+ FG A +T N K +EV+QPP DS+S L FSP+A L A+SWD++
Sbjct: 1 MSLFGQATTSTVSNATGDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSK 53
>UNIPROTKB|E1BVV3 [details] [associations]
symbol:Gga.22300 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0071407 "cellular response to organic cyclic
compound" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071407
GeneTree:ENSGT00530000063440 EMBL:AADN02018984 IPI:IPI00593441
ProteinModelPortal:E1BVV3 Ensembl:ENSGALT00000038968
ArrayExpress:E1BVV3 Uniprot:E1BVV3
Length = 214
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ A N NP K IEV+ PP DS+S L FSP N L+A SW N
Sbjct: 18 FGSTT-ADNHNPMKDIEVTSPPDDSISCLAFSPPTLPGNFLIAGSWAN 64
>UNIPROTKB|Q7ZZY7 [details] [associations]
symbol:Rae1/Gle2 "Rae1/Gle2" species:8355 "Xenopus laevis"
[GO:0005515 "protein binding" evidence=IPI] [GO:0008017
"microtubule binding" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0008017 HOVERGEN:HBG002942 EMBL:BC077196
EMBL:AY256464 RefSeq:NP_001083956.1 UniGene:Xl.56581 IntAct:Q7ZZY7
GeneID:399210 KEGG:xla:399210 CTD:399210 Uniprot:Q7ZZY7
Length = 368
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/48 (52%), Positives = 30/48 (62%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ A N NP K IEV+ PP DS+S L FSP+ N L+A SW N
Sbjct: 18 FGSTAT-DNHNPMKDIEVASPPDDSISCLSFSPQTLPGNFLIAGSWAN 64
>UNIPROTKB|E1C7F8 [details] [associations]
symbol:Gga.22300 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0071407 "cellular response to organic cyclic
compound" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071407
GeneTree:ENSGT00530000063440 OMA:RVAIQYV EMBL:AADN02018984
IPI:IPI00818815 ProteinModelPortal:E1C7F8
Ensembl:ENSGALT00000012397 ArrayExpress:E1C7F8 Uniprot:E1C7F8
Length = 368
Score = 114 (45.2 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ A N NP K IEV+ PP DS+S L FSP N L+A SW N
Sbjct: 18 FGSTT-ADNHNPMKDIEVTSPPDDSISCLAFSPPTLPGNFLIAGSWAN 64
>UNIPROTKB|B0QZ36 [details] [associations]
symbol:RAE1 "mRNA export factor" species:9606 "Homo
sapiens" [GO:0071407 "cellular response to organic cyclic compound"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 PROSITE:PS00678 InterPro:IPR019775
GO:GO:0071407 HOGENOM:HOG000208823 EMBL:AL109955 EMBL:AL135939
UniGene:Hs.371698 HGNC:HGNC:9828 IPI:IPI00797295 SMR:B0QZ36
STRING:B0QZ36 Ensembl:ENST00000411894 Ensembl:ENST00000429339
HOVERGEN:HBG097684 Uniprot:B0QZ36
Length = 137
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+A N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>UNIPROTKB|B0QZ37 [details] [associations]
symbol:RAE1 "mRNA export factor" species:9606 "Homo
sapiens" [GO:0071407 "cellular response to organic cyclic compound"
evidence=IEA] InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400
SMART:SM00320 Gene3D:2.130.10.10 GO:GO:0071407 EMBL:AL109955
EMBL:AL135939 UniGene:Hs.371698 HGNC:HGNC:9828 IPI:IPI00794643
SMR:B0QZ37 STRING:B0QZ37 Ensembl:ENST00000452119 Uniprot:B0QZ37
Length = 87
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+A N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>UNIPROTKB|P78406 [details] [associations]
symbol:RAE1 "mRNA export factor" species:9606 "Homo
sapiens" [GO:0071407 "cellular response to organic cyclic compound"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008017
"microtubule binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0005640
"nuclear outer membrane" evidence=TAS] [GO:0005643 "nuclear pore"
evidence=TAS] [GO:0005856 "cytoskeleton" evidence=TAS] [GO:0006406
"mRNA export from nucleus" evidence=TAS] [GO:0005635 "nuclear
envelope" evidence=TAS] [GO:0005975 "carbohydrate metabolic
process" evidence=TAS] [GO:0008645 "hexose transport" evidence=TAS]
[GO:0010827 "regulation of glucose transport" evidence=TAS]
[GO:0015758 "glucose transport" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019221 "cytokine-mediated
signaling pathway" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0055085 "transmembrane
transport" evidence=TAS] Reactome:REACT_111217 Reactome:REACT_15518
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005737 EMBL:CH471077 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0016032 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0005856
GO:GO:0044281 GO:GO:0005975 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0005643 GO:GO:0019221 GO:GO:0015758
GO:GO:0010827 GO:GO:0055085 GO:GO:0003723 GO:GO:0006406
GO:GO:0008017 GO:GO:0005640 GO:GO:0071407 HOVERGEN:HBG002942
KO:K14298 EMBL:AL109955 EMBL:AL135939 PDB:3MMY PDBsum:3MMY CTD:8480
OrthoDB:EOG4XD3R8 EMBL:U84720 EMBL:U85943 EMBL:AY349350
EMBL:AK292247 EMBL:BC103754 EMBL:BC106924 EMBL:BC106923
IPI:IPI00019733 RefSeq:NP_001015885.1 RefSeq:NP_003601.1
UniGene:Hs.371698 ProteinModelPortal:P78406 SMR:P78406
DIP:DIP-41063N IntAct:P78406 MINT:MINT-121447 STRING:P78406
PhosphoSite:P78406 DMDM:3122666 PaxDb:P78406 PRIDE:P78406
Ensembl:ENST00000371242 Ensembl:ENST00000395840
Ensembl:ENST00000395841 GeneID:8480 KEGG:hsa:8480 UCSC:uc002xyg.3
GeneCards:GC20P055926 HGNC:HGNC:9828 HPA:HPA018242 MIM:603343
neXtProt:NX_P78406 PharmGKB:PA34182 InParanoid:P78406
PhylomeDB:P78406 EvolutionaryTrace:P78406 GenomeRNAi:8480
NextBio:31729 ArrayExpress:P78406 Bgee:P78406 CleanEx:HS_RAE1
Genevestigator:P78406 GermOnline:ENSG00000101146 Uniprot:P78406
Length = 368
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+A N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>ZFIN|ZDB-GENE-040426-1029 [details] [associations]
symbol:rae1 "RAE1 RNA export 1 homolog (S. pombe)"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 ZFIN:ZDB-GENE-040426-1029
GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GeneTree:ENSGT00530000063440
HOVERGEN:HBG002942 HSSP:P26449 HOGENOM:HOG000208823 KO:K14298
OMA:RVAIQYV CTD:8480 OrthoDB:EOG4XD3R8 EMBL:BC049445 EMBL:BC065853
IPI:IPI00501635 RefSeq:NP_957292.1 UniGene:Dr.75426
ProteinModelPortal:Q7ZWF0 STRING:Q7ZWF0 PRIDE:Q7ZWF0
Ensembl:ENSDART00000020333 GeneID:393973 KEGG:dre:393973
InParanoid:Q6P037 NextBio:20814944 ArrayExpress:Q7ZWF0 Bgee:Q7ZWF0
Uniprot:Q7ZWF0
Length = 368
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ ++ NP K +EV+ PP DS+S L FSP N L+ SW N
Sbjct: 18 FGSTTTDSH-NPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWAN 64
>UNIPROTKB|E2RSV2 [details] [associations]
symbol:RAE1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071407 "cellular response to organic cyclic
compound" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071407
GeneTree:ENSGT00530000063440 KO:K14298 OMA:RVAIQYV CTD:8480
EMBL:AAEX03014037 RefSeq:XP_543066.2 ProteinModelPortal:E2RSV2
Ensembl:ENSCAFT00000019134 GeneID:485942 KEGG:cfa:485942
NextBio:20859833 Uniprot:E2RSV2
Length = 368
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ + N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTST-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>UNIPROTKB|Q5E9A4 [details] [associations]
symbol:RAE1 "mRNA export factor" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0071407 "cellular response to organic cyclic
compound" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071407
GeneTree:ENSGT00530000063440 HOVERGEN:HBG002942
HOGENOM:HOG000208823 KO:K14298 OMA:RVAIQYV EMBL:BT021016
EMBL:BC111248 IPI:IPI00690618 RefSeq:NP_001015585.1
UniGene:Bt.46468 ProteinModelPortal:Q5E9A4 STRING:Q5E9A4
PRIDE:Q5E9A4 Ensembl:ENSBTAT00000014523 GeneID:513080
KEGG:bta:513080 CTD:8480 InParanoid:Q5E9A4 OrthoDB:EOG4XD3R8
NextBio:20870693 Uniprot:Q5E9A4
Length = 368
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>UNIPROTKB|A5GFN6 [details] [associations]
symbol:RAE1 "mRNA export factor" species:9823 "Sus scrofa"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0071407 "cellular response to organic cyclic
compound" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071407
GeneTree:ENSGT00530000063440 HOVERGEN:HBG002942
HOGENOM:HOG000208823 KO:K14298 OMA:RVAIQYV CTD:8480
OrthoDB:EOG4XD3R8 EMBL:CR956362 RefSeq:NP_001098766.1
UniGene:Ssc.2778 ProteinModelPortal:A5GFN6 STRING:A5GFN6
Ensembl:ENSSSCT00000008215 Ensembl:ENSSSCT00000036296
GeneID:100125839 KEGG:ssc:100125839 Uniprot:A5GFN6
Length = 368
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>MGI|MGI:1913929 [details] [associations]
symbol:Rae1 "RAE1 RNA export 1 homolog (S. pombe)"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071407 "cellular
response to organic cyclic compound" evidence=IDA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
MGI:MGI:1913929 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071407
GeneTree:ENSGT00530000063440 HOVERGEN:HBG002942
HOGENOM:HOG000208823 KO:K14298 OMA:RVAIQYV CTD:8480
OrthoDB:EOG4XD3R8 EMBL:AK079383 EMBL:AK146058 EMBL:AK156681
EMBL:BC059051 IPI:IPI00225719 RefSeq:NP_780321.1 UniGene:Mm.4113
ProteinModelPortal:Q8C570 SMR:Q8C570 IntAct:Q8C570 STRING:Q8C570
PhosphoSite:Q8C570 PaxDb:Q8C570 PRIDE:Q8C570
Ensembl:ENSMUST00000029013 GeneID:66679 KEGG:mmu:66679
InParanoid:Q8C570 NextBio:322353 Bgee:Q8C570 CleanEx:MM_RAE1
Genevestigator:Q8C570 GermOnline:ENSMUSG00000027509 Uniprot:Q8C570
Length = 368
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>RGD|1311540 [details] [associations]
symbol:Rae1 "RAE1 RNA export 1 homolog (S. pombe)" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071407 "cellular response to organic
cyclic compound" evidence=IEA;ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 RGD:1311540 GO:GO:0005634
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GeneTree:ENSGT00530000063440 HOVERGEN:HBG002942
HOGENOM:HOG000208823 KO:K14298 OMA:RVAIQYV CTD:8480
OrthoDB:EOG4XD3R8 EMBL:BC104721 EMBL:BC105758 IPI:IPI00357999
RefSeq:NP_001028880.1 UniGene:Rn.14600 ProteinModelPortal:Q3SWS8
STRING:Q3SWS8 PRIDE:Q3SWS8 Ensembl:ENSRNOT00000038182 GeneID:362281
KEGG:rno:362281 UCSC:RGD:1311540 InParanoid:Q3SWS8 NextBio:679325
Genevestigator:Q3SWS8 GermOnline:ENSRNOG00000021295 Uniprot:Q3SWS8
Length = 368
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.307 0.118 0.337 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 49 49 0.00091 102 3 11 23 0.39 27
29 0.38 26
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 450 (48 KB)
Total size of DFA: 79 KB (2064 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.06u 0.25s 7.31t Elapsed: 00:00:01
Total cpu time: 7.06u 0.25s 7.31t Elapsed: 00:00:01
Start: Fri May 10 09:58:50 2013 End: Fri May 10 09:58:51 2013