BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045898
(49 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export
Factor Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export
Factor Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export
Factor Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export
Factor Rae1
Length = 368
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+A N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 19 IEVSQPPSDSVSSLCFSPKANILVATSWD 47
+++ Q P D +S + P ++L+ TSWD
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWD 32
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 19 IEVSQPPSDSVSSLCFSPKANILVATSWD 47
+++ Q P D +S + P ++L+ TSWD
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWD 32
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 19 IEVSQPPSDSVSSLCFSPKANILVATSWD 47
+++ Q P D +S + P ++L+ TSWD
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWD 32
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 19 IEVSQPPSDSVSSLCFSPKANILVATSWD 47
+++ Q P D +S + P ++L+ TSWD
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWD 32
>pdb|1SXG|A Chain A, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|D Chain D, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|B Chain B, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|I Chain I, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|P Chain P, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|F Chain F, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|2NZU|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors G6p And Fbp
pdb|2NZV|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors G6p And Fbp
pdb|2OEN|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors Glucose-6-Phosphate And
Fructose-1,6-Bisphosphate
Length = 280
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANI 40
A+ +TNQ P+ +I+ Q D+V SL S NI
Sbjct: 92 LAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNI 128
>pdb|1SXH|A Chain A, Apo Structure Of B. Megaterium Transcription Regulator
pdb|1SXH|D Chain D, Apo Structure Of B. Megaterium Transcription Regulator
pdb|1SXI|A Chain A, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|D Chain D, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|B Chain B, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|I Chain I, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|R Chain R, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|T Chain T, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|L Chain L, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|K Chain K, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|W Chain W, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|G Chain G, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|N Chain N, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|M Chain M, Structure Of Apo Transcription Regulator B. Megaterium
Length = 280
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANI 40
A+ +TNQ P+ +I+ Q D+V SL S NI
Sbjct: 92 LAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNI 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.117 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,287
Number of Sequences: 62578
Number of extensions: 25684
Number of successful extensions: 73
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 11
length of query: 49
length of database: 14,973,337
effective HSP length: 22
effective length of query: 27
effective length of database: 13,596,621
effective search space: 367108767
effective search space used: 367108767
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)