BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045898
(49 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670
PE=2 SV=2
Length = 349
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
Query: 1 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
MATFGA A A N NPNKS EV+ P+DS+SSL FSP+A+ILVATSWDNQ
Sbjct: 1 MATFGAPATA-NSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQ 48
>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rae1 PE=1 SV=1
Length = 352
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 1 MATFGAAAVATNQNP----NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
M+ FG A +T N K +EV+QPP DS+S L FSP+A L A+SWD++
Sbjct: 1 MSLFGQATTSTVSNATGDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSK 53
>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1
Length = 368
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 12 NQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
N NP K IEV+ PP DS+S L FSP N L+A SW N
Sbjct: 25 NHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWAN 64
>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1
Length = 368
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+A N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1
Length = 368
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+A N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1
Length = 368
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+A N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2
Length = 368
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 2 ATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+ ++ NP K +EV+ PP DS+S L FSP N L+ SW N
Sbjct: 16 GVFGSTTTDSH-NPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWAN 64
>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1
Length = 368
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1
Length = 368
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1
Length = 368
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1
Length = 368
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
FG+ N NP K IEV+ P DS+ L FSP N L+A SW N
Sbjct: 18 FGSTTT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum
GN=bub3 PE=3 SV=1
Length = 331
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 20 EVSQPPSDSVSSLCFSPKANILVATSWD 47
E+ PPSD +SS+ F P + L+ TSWD
Sbjct: 11 ELRLPPSDGISSVNFCPNSVNLLVTSWD 38
>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2
Length = 326
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 18 SIEVSQPPSDSVSSLCFSPK-ANILVATSWD 47
+++QPP D +SS+ FSP + L+ +SWD
Sbjct: 6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWD 36
>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1
Length = 326
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 18 SIEVSQPPSDSVSSLCFSPK-ANILVATSWD 47
+++QPP D +SS+ FSP + L+ +SWD
Sbjct: 6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWD 36
>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1
Length = 328
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 18 SIEVSQPPSDSVSSLCFSPK-ANILVATSWD 47
+++QPP D +SS+ FSP + L+ +SWD
Sbjct: 6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWD 36
>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1
Length = 328
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 18 SIEVSQPPSDSVSSLCFSPK-ANILVATSWD 47
+++QPP D +SS+ FSP + L+ +SWD
Sbjct: 6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWD 36
>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=GLE2 PE=1 SV=1
Length = 365
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 6 AAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILV-ATSWDNQ 49
+ A+A ++ I ++ P DS+S + FSP+ + + A+SWD +
Sbjct: 16 STAMANEKDLANDIVINSPAEDSISDIAFSPQQDFMFSASSWDGK 60
>sp|Q5DFU0|CIAO1_SCHJA Probable cytosolic iron-sulfur protein assembly protein
OS=Schistosoma japonicum PE=2 SV=1
Length = 352
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
+ + V QP S V S+ + P +LV+TS+DN+
Sbjct: 144 QCVSVLQPHSQDVKSVAWHPHGEVLVSTSYDNK 176
>sp|Q8BU03|PWP2_MOUSE Periodic tryptophan protein 2 homolog OS=Mus musculus GN=Pwp2 PE=1
SV=1
Length = 919
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 VSSLCFSPKANILVATSWD 47
VS LCF+P +IL + SWD
Sbjct: 504 VSGLCFNPMKSILASASWD 522
>sp|Q5RFQ3|PWP2_PONAB Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2
SV=1
Length = 918
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 29 VSSLCFSPKANILVATSWD 47
+S LCF+P +IL + SWD
Sbjct: 501 ISGLCFNPMKSILASASWD 519
>sp|P26449|BUB3_YEAST Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BUB3 PE=1 SV=1
Length = 341
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 19 IEVSQPPSDSVSSLCFSPKANILVATSWD 47
+++ Q P D +S + P ++L+ TSWD
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWD 32
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.117 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,995,019
Number of Sequences: 539616
Number of extensions: 330619
Number of successful extensions: 1103
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 29
length of query: 49
length of database: 191,569,459
effective HSP length: 22
effective length of query: 27
effective length of database: 179,697,907
effective search space: 4851843489
effective search space used: 4851843489
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)