Query 045898
Match_columns 49
No_of_seqs 101 out of 398
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0647 mRNA export protein (c 99.5 3.3E-14 7.1E-19 96.2 4.1 49 1-49 1-51 (347)
2 KOG1036 Mitotic spindle checkp 98.9 1.5E-09 3.3E-14 73.4 3.5 33 17-49 4-36 (323)
3 PF00400 WD40: WD domain, G-be 98.1 8.1E-06 1.8E-10 38.0 3.7 31 19-49 4-34 (39)
4 KOG0291 WD40-repeat-containing 97.8 2.5E-05 5.3E-10 58.3 3.2 34 16-49 468-501 (893)
5 smart00320 WD40 WD40 repeats. 97.2 0.0011 2.5E-08 27.5 3.8 27 23-49 9-35 (40)
6 KOG0279 G protein beta subunit 96.8 0.002 4.4E-08 43.9 3.9 32 18-49 139-173 (315)
7 KOG0266 WD40 repeat-containing 96.5 0.0057 1.2E-07 42.0 4.3 33 17-49 237-269 (456)
8 KOG0645 WD40 repeat protein [G 96.2 0.0044 9.5E-08 42.2 2.7 28 22-49 57-84 (312)
9 PTZ00421 coronin; Provisional 96.0 0.01 2.2E-07 41.7 3.8 28 22-49 71-99 (493)
10 cd00200 WD40 WD40 domain, foun 95.9 0.012 2.5E-07 34.0 3.1 26 23-48 6-31 (289)
11 KOG0266 WD40 repeat-containing 95.8 0.015 3.3E-07 39.9 4.0 33 17-49 279-311 (456)
12 PTZ00421 coronin; Provisional 95.7 0.024 5.2E-07 39.9 4.6 31 19-49 161-191 (493)
13 PF12894 Apc4_WD40: Anaphase-p 95.7 0.025 5.4E-07 28.6 3.5 23 27-49 12-34 (47)
14 KOG0286 G-protein beta subunit 95.5 0.015 3.3E-07 40.0 3.1 33 17-49 306-338 (343)
15 KOG0273 Beta-transducin family 95.4 0.023 5.1E-07 40.9 3.8 30 19-48 445-474 (524)
16 KOG0272 U4/U6 small nuclear ri 95.1 0.013 2.9E-07 41.6 1.9 28 22-49 257-284 (459)
17 KOG1036 Mitotic spindle checkp 95.0 0.033 7.1E-07 38.3 3.3 30 20-49 88-117 (323)
18 cd00200 WD40 WD40 domain, foun 94.7 0.086 1.9E-06 30.3 4.1 27 23-49 258-284 (289)
19 KOG0973 Histone transcription 94.6 0.041 8.9E-07 42.1 3.3 29 20-48 63-91 (942)
20 KOG0272 U4/U6 small nuclear ri 94.5 0.053 1.1E-06 38.7 3.5 34 16-49 335-368 (459)
21 KOG0263 Transcription initiati 94.4 0.073 1.6E-06 39.7 4.2 33 16-48 567-599 (707)
22 KOG0641 WD40 repeat protein [G 94.2 0.082 1.8E-06 36.0 3.8 33 16-48 263-295 (350)
23 KOG0278 Serine/threonine kinas 94.2 0.089 1.9E-06 36.0 3.9 34 16-49 256-290 (334)
24 PTZ00420 coronin; Provisional 94.1 0.12 2.5E-06 37.4 4.6 31 19-49 67-98 (568)
25 PLN00181 protein SPA1-RELATED; 93.8 0.093 2E-06 38.0 3.6 25 25-49 482-506 (793)
26 KOG1273 WD40 repeat protein [G 93.5 0.067 1.4E-06 37.5 2.5 29 20-48 59-87 (405)
27 PF08662 eIF2A: Eukaryotic tra 93.4 0.15 3.2E-06 31.5 3.7 25 24-48 98-122 (194)
28 KOG1539 WD repeat protein [Gen 93.4 0.099 2.1E-06 39.9 3.3 28 22-49 572-599 (910)
29 KOG2096 WD40 repeat protein [G 93.3 0.08 1.7E-06 37.2 2.5 30 19-48 79-108 (420)
30 KOG1063 RNA polymerase II elon 93.2 0.097 2.1E-06 39.3 3.0 28 22-49 568-595 (764)
31 KOG2110 Uncharacterized conser 93.1 0.15 3.3E-06 35.9 3.7 32 17-48 164-195 (391)
32 KOG0645 WD40 repeat protein [G 92.8 0.2 4.4E-06 34.3 3.9 31 19-49 98-128 (312)
33 KOG0283 WD40 repeat-containing 92.8 0.12 2.7E-06 38.6 3.1 31 18-48 259-289 (712)
34 PF08662 eIF2A: Eukaryotic tra 92.7 0.27 5.9E-06 30.3 4.1 24 22-45 139-162 (194)
35 KOG0271 Notchless-like WD40 re 92.7 0.15 3.2E-06 36.5 3.2 27 23-49 112-138 (480)
36 KOG0647 mRNA export protein (c 92.6 0.13 2.7E-06 35.7 2.7 28 22-49 109-138 (347)
37 KOG0772 Uncharacterized conser 92.4 0.13 2.9E-06 37.8 2.7 31 19-49 355-387 (641)
38 PLN00181 protein SPA1-RELATED; 91.8 0.4 8.7E-06 34.8 4.6 33 17-49 566-599 (793)
39 PTZ00420 coronin; Provisional 91.7 0.33 7.2E-06 35.1 4.1 28 22-49 121-149 (568)
40 KOG1188 WD40 repeat protein [G 91.7 0.19 4.1E-06 35.2 2.7 29 20-48 159-188 (376)
41 KOG2106 Uncharacterized conser 91.6 0.37 7.9E-06 35.5 4.2 30 18-48 440-469 (626)
42 KOG0271 Notchless-like WD40 re 91.5 0.21 4.6E-06 35.7 2.9 28 22-49 363-390 (480)
43 KOG0273 Beta-transducin family 91.5 0.25 5.4E-06 35.8 3.3 27 23-49 356-382 (524)
44 KOG0282 mRNA splicing factor [ 91.4 0.086 1.9E-06 38.0 0.9 33 16-48 204-237 (503)
45 KOG1274 WD40 repeat protein [G 91.3 0.31 6.7E-06 37.5 3.7 31 19-49 131-161 (933)
46 KOG0322 G-protein beta subunit 91.1 0.11 2.3E-06 35.7 1.1 32 17-48 284-315 (323)
47 KOG0313 Microtubule binding pr 90.8 0.35 7.6E-06 34.3 3.4 31 18-49 252-282 (423)
48 KOG0973 Histone transcription 90.1 0.44 9.5E-06 36.7 3.7 34 16-49 119-152 (942)
49 KOG0288 WD40 repeat protein Ti 89.9 0.25 5.3E-06 35.4 2.1 21 29-49 390-410 (459)
50 KOG0279 G protein beta subunit 89.6 0.41 8.8E-06 32.9 2.9 31 19-49 56-86 (315)
51 KOG0316 Conserved WD40 repeat- 89.5 0.45 9.7E-06 32.4 3.0 26 24-49 181-206 (307)
52 KOG0291 WD40-repeat-containing 88.9 0.51 1.1E-05 36.1 3.1 28 22-49 346-373 (893)
53 KOG0268 Sof1-like rRNA process 88.6 0.27 5.7E-06 34.9 1.5 31 19-49 265-295 (433)
54 KOG1009 Chromatin assembly com 88.5 0.63 1.4E-05 33.2 3.2 29 20-48 59-87 (434)
55 KOG0322 G-protein beta subunit 88.4 0.4 8.8E-06 32.9 2.2 30 17-49 245-274 (323)
56 KOG2111 Uncharacterized conser 87.9 1.2 2.5E-05 31.1 4.2 32 17-48 216-248 (346)
57 KOG1009 Chromatin assembly com 87.9 0.59 1.3E-05 33.3 2.8 30 19-48 335-364 (434)
58 KOG0318 WD40 repeat stress pro 87.7 0.91 2E-05 33.5 3.7 32 18-49 227-258 (603)
59 KOG0293 WD40 repeat-containing 87.6 0.49 1.1E-05 34.2 2.3 35 15-49 213-247 (519)
60 KOG2055 WD40 repeat protein [G 87.5 0.8 1.7E-05 33.3 3.3 33 17-49 204-236 (514)
61 KOG0641 WD40 repeat protein [G 87.2 0.74 1.6E-05 31.4 2.9 26 24-49 87-112 (350)
62 KOG0313 Microtubule binding pr 87.2 0.77 1.7E-05 32.6 3.1 27 23-49 190-216 (423)
63 PRK01742 tolB translocation pr 87.2 0.84 1.8E-05 30.9 3.2 25 24-48 201-225 (429)
64 KOG4328 WD40 protein [Function 86.9 0.71 1.5E-05 33.4 2.8 31 19-49 227-258 (498)
65 KOG0283 WD40 repeat-containing 86.7 0.64 1.4E-05 34.9 2.6 23 26-48 451-473 (712)
66 KOG0318 WD40 repeat stress pro 86.6 0.61 1.3E-05 34.4 2.4 24 25-48 529-552 (603)
67 KOG1446 Histone H3 (Lys4) meth 86.5 1.3 2.8E-05 30.5 3.8 29 17-45 178-206 (311)
68 KOG0295 WD40 repeat-containing 86.4 0.94 2E-05 32.1 3.1 27 23-49 331-357 (406)
69 KOG0306 WD40-repeat-containing 86.2 0.95 2.1E-05 34.7 3.2 24 26-49 508-531 (888)
70 KOG0300 WD40 repeat-containing 85.9 0.91 2E-05 32.2 2.9 32 18-49 182-213 (481)
71 KOG0275 Conserved WD40 repeat- 85.9 0.52 1.1E-05 33.5 1.7 25 24-48 211-235 (508)
72 KOG0640 mRNA cleavage stimulat 85.5 1.2 2.6E-05 31.5 3.3 26 23-48 258-283 (430)
73 KOG0263 Transcription initiati 85.1 1 2.2E-05 33.9 3.0 28 22-49 615-642 (707)
74 KOG0299 U3 snoRNP-associated p 84.7 0.9 2E-05 32.8 2.4 22 27-48 381-402 (479)
75 KOG0293 WD40 repeat-containing 84.4 1.1 2.4E-05 32.5 2.8 25 23-47 266-290 (519)
76 KOG0265 U5 snRNP-specific prot 84.3 1.2 2.7E-05 30.9 2.9 34 15-48 36-69 (338)
77 COG2319 FOG: WD40 repeat [Gene 84.3 2.9 6.4E-05 24.7 4.2 32 17-48 189-221 (466)
78 PF10313 DUF2415: Uncharacteri 84.0 2.2 4.7E-05 21.5 3.0 18 27-44 1-21 (43)
79 KOG2110 Uncharacterized conser 83.8 1.2 2.7E-05 31.4 2.8 30 16-45 207-237 (391)
80 KOG1274 WD40 repeat protein [G 83.2 1.3 2.7E-05 34.3 2.8 22 27-48 233-254 (933)
81 KOG4283 Transcription-coupled 83.1 1.7 3.6E-05 30.6 3.2 29 21-49 183-212 (397)
82 KOG2139 WD40 repeat protein [G 83.1 2.3 5E-05 30.4 3.9 32 17-48 229-260 (445)
83 KOG1063 RNA polymerase II elon 82.7 1.5 3.3E-05 33.2 3.0 30 20-49 355-384 (764)
84 KOG0302 Ribosome Assembly prot 82.6 0.69 1.5E-05 33.0 1.2 25 25-49 256-281 (440)
85 KOG4497 Uncharacterized conser 82.3 1.4 3E-05 31.3 2.6 22 27-48 211-232 (447)
86 KOG1445 Tumor-specific antigen 82.3 1.6 3.5E-05 33.4 3.0 32 18-49 712-743 (1012)
87 KOG1446 Histone H3 (Lys4) meth 82.2 2.8 6.1E-05 28.8 4.0 34 16-49 90-123 (311)
88 KOG1523 Actin-related protein 81.8 1.2 2.5E-05 31.2 2.0 29 21-49 141-169 (361)
89 KOG0319 WD40-repeat-containing 81.7 1.7 3.7E-05 33.0 3.0 33 17-49 496-528 (775)
90 KOG0277 Peroxisomal targeting 80.9 0.72 1.6E-05 31.6 0.8 26 22-47 230-256 (311)
91 KOG2445 Nuclear pore complex c 80.8 2 4.3E-05 30.0 2.9 26 23-48 220-249 (361)
92 KOG2096 WD40 repeat protein [G 80.7 1.3 2.8E-05 31.3 2.0 28 17-44 364-391 (420)
93 KOG4497 Uncharacterized conser 80.6 1.7 3.7E-05 30.9 2.5 23 25-47 90-113 (447)
94 PF07676 PD40: WD40-like Beta 80.6 3.2 6.9E-05 18.9 2.8 18 28-45 10-27 (39)
95 KOG0295 WD40 repeat-containing 80.3 1.2 2.7E-05 31.5 1.8 31 19-49 186-216 (406)
96 KOG1408 WD40 repeat protein [F 80.2 2 4.4E-05 33.2 2.9 26 20-45 72-97 (1080)
97 KOG0310 Conserved WD40 repeat- 80.0 1.7 3.8E-05 31.4 2.5 27 23-49 150-177 (487)
98 KOG0640 mRNA cleavage stimulat 79.8 1.7 3.8E-05 30.7 2.4 30 20-49 166-195 (430)
99 KOG0646 WD40 repeat protein [G 79.1 3.9 8.3E-05 29.7 3.9 34 16-49 265-300 (476)
100 KOG0286 G-protein beta subunit 78.8 3.4 7.4E-05 28.7 3.5 32 17-48 46-77 (343)
101 PF04762 IKI3: IKI3 family; I 78.0 3.6 7.8E-05 31.4 3.7 32 16-47 110-141 (928)
102 KOG0269 WD40 repeat-containing 77.8 2.6 5.6E-05 32.3 2.9 27 23-49 217-243 (839)
103 TIGR02608 delta_60_rpt delta-6 77.7 4.6 9.9E-05 21.0 3.1 20 27-46 1-20 (55)
104 KOG1332 Vesicle coat complex C 77.2 3.6 7.8E-05 28.1 3.2 31 18-48 248-278 (299)
105 KOG0296 Angio-associated migra 76.9 3.4 7.3E-05 29.3 3.1 29 20-48 100-128 (399)
106 KOG0289 mRNA splicing factor [ 76.4 4 8.7E-05 29.7 3.4 26 23-48 386-411 (506)
107 KOG1407 WD40 repeat protein [F 76.3 3.9 8.4E-05 28.2 3.2 26 22-47 185-210 (313)
108 PRK05137 tolB translocation pr 76.2 5.7 0.00012 26.8 4.0 24 24-47 199-222 (435)
109 KOG1310 WD40 repeat protein [G 75.9 2.4 5.1E-05 31.9 2.2 26 23-48 47-72 (758)
110 COG2319 FOG: WD40 repeat [Gene 75.6 7.3 0.00016 23.1 3.9 29 17-45 146-174 (466)
111 PRK03629 tolB translocation pr 75.1 5.8 0.00013 27.0 3.8 23 25-47 197-219 (429)
112 PRK00178 tolB translocation pr 74.6 6.3 0.00014 26.3 3.8 25 24-48 196-220 (430)
113 PF10647 Gmad1: Lipoprotein Lp 74.5 6.7 0.00015 25.1 3.8 27 18-44 102-129 (253)
114 TIGR03866 PQQ_ABC_repeats PQQ- 74.4 4.3 9.4E-05 24.4 2.8 21 25-45 247-267 (300)
115 KOG0284 Polyadenylation factor 74.2 3 6.5E-05 30.0 2.3 28 21-48 133-160 (464)
116 PF08149 BING4CT: BING4CT (NUC 73.8 3 6.5E-05 23.6 1.8 22 24-45 7-28 (80)
117 KOG1445 Tumor-specific antigen 73.5 1.2 2.5E-05 34.1 0.2 33 16-48 69-102 (1012)
118 KOG0275 Conserved WD40 repeat- 73.4 1.6 3.5E-05 31.1 0.8 26 24-49 261-286 (508)
119 KOG0270 WD40 repeat-containing 73.3 3.9 8.5E-05 29.5 2.7 27 23-49 283-310 (463)
120 KOG2055 WD40 repeat protein [G 73.1 4.8 0.0001 29.4 3.1 25 23-47 479-503 (514)
121 KOG2394 WD40 protein DMR-N9 [G 73.0 3.8 8.3E-05 30.5 2.7 23 26-48 290-312 (636)
122 PRK11028 6-phosphogluconolacto 72.3 8 0.00017 24.7 3.8 23 24-46 172-194 (330)
123 KOG0315 G-protein beta subunit 72.1 5.1 0.00011 27.5 3.0 29 21-49 210-238 (311)
124 PF15492 Nbas_N: Neuroblastoma 71.5 10 0.00022 25.8 4.3 26 23-48 226-251 (282)
125 PRK02889 tolB translocation pr 71.4 6.5 0.00014 26.6 3.4 24 24-47 193-216 (427)
126 KOG0305 Anaphase promoting com 70.5 6.5 0.00014 28.4 3.3 22 26-47 217-238 (484)
127 PRK11028 6-phosphogluconolacto 70.4 5.6 0.00012 25.4 2.8 21 27-47 35-55 (330)
128 KOG1354 Serine/threonine prote 69.6 3.3 7.2E-05 29.5 1.7 17 27-43 273-289 (433)
129 KOG2919 Guanine nucleotide-bin 69.2 4.4 9.5E-05 28.7 2.2 23 26-48 207-230 (406)
130 TIGR02800 propeller_TolB tol-p 68.8 7.1 0.00015 25.5 3.0 25 24-48 187-211 (417)
131 KOG2394 WD40 protein DMR-N9 [G 68.7 5.4 0.00012 29.7 2.7 21 27-47 333-353 (636)
132 PRK01742 tolB translocation pr 68.1 5 0.00011 27.2 2.3 19 30-48 375-393 (429)
133 KOG0264 Nucleosome remodeling 68.0 7.7 0.00017 27.8 3.2 28 22-49 268-296 (422)
134 KOG1963 WD40 repeat protein [G 67.4 4.4 9.6E-05 31.0 2.0 30 19-48 244-273 (792)
135 COG5170 CDC55 Serine/threonine 66.8 4.3 9.4E-05 28.8 1.8 18 26-43 280-297 (460)
136 KOG0282 mRNA splicing factor [ 66.3 2.5 5.3E-05 30.8 0.5 33 17-49 249-281 (503)
137 KOG1538 Uncharacterized conser 66.2 6.5 0.00014 30.5 2.7 32 17-48 44-75 (1081)
138 KOG0643 Translation initiation 65.5 6 0.00013 27.4 2.2 32 18-49 182-213 (327)
139 PF10584 Proteasome_A_N: Prote 64.1 1.9 4.1E-05 19.1 -0.2 9 33-41 7-15 (23)
140 KOG0771 Prolactin regulatory e 64.0 5.2 0.00011 28.4 1.8 30 19-48 317-346 (398)
141 KOG0284 Polyadenylation factor 63.9 7 0.00015 28.2 2.4 31 19-49 343-373 (464)
142 KOG1539 WD repeat protein [Gen 63.3 9.4 0.0002 29.7 3.1 21 27-47 618-638 (910)
143 KOG0303 Actin-binding protein 63.2 12 0.00026 27.1 3.4 29 19-49 168-196 (472)
144 PRK04922 tolB translocation pr 63.2 7.5 0.00016 26.3 2.4 24 25-48 202-225 (433)
145 KOG1332 Vesicle coat complex C 63.1 19 0.00041 24.7 4.3 33 17-49 47-81 (299)
146 KOG0305 Anaphase promoting com 62.9 16 0.00035 26.5 4.1 34 16-49 421-454 (484)
147 KOG0301 Phospholipase A2-activ 62.7 8 0.00017 29.5 2.6 32 17-49 92-123 (745)
148 PF15492 Nbas_N: Neuroblastoma 62.0 12 0.00026 25.5 3.2 32 17-48 138-169 (282)
149 KOG0296 Angio-associated migra 61.6 11 0.00024 26.8 3.1 31 19-49 361-391 (399)
150 KOG0264 Nucleosome remodeling 61.5 16 0.00035 26.2 3.8 32 17-48 307-339 (422)
151 KOG2445 Nuclear pore complex c 61.2 9.8 0.00021 26.7 2.7 28 21-48 8-35 (361)
152 KOG1523 Actin-related protein 59.7 8.5 0.00018 27.0 2.2 23 24-46 98-120 (361)
153 KOG0294 WD40 repeat-containing 59.4 11 0.00025 26.4 2.8 28 21-48 78-107 (362)
154 KOG1538 Uncharacterized conser 59.3 22 0.00047 27.8 4.3 32 18-49 168-204 (1081)
155 KOG0642 Cell-cycle nuclear pro 58.8 12 0.00026 27.8 2.9 32 18-49 388-419 (577)
156 KOG4227 WD40 repeat protein [G 58.5 8 0.00017 28.3 2.0 24 24-47 54-77 (609)
157 KOG2919 Guanine nucleotide-bin 58.5 14 0.0003 26.3 3.1 30 16-45 240-269 (406)
158 KOG0771 Prolactin regulatory e 58.4 13 0.00028 26.5 2.9 22 27-48 282-303 (398)
159 PRK04792 tolB translocation pr 58.3 11 0.00023 25.9 2.5 22 26-47 217-238 (448)
160 PRK13616 lipoprotein LpqB; Pro 58.2 10 0.00022 27.7 2.4 19 26-44 447-465 (591)
161 KOG0310 Conserved WD40 repeat- 58.1 13 0.00028 27.2 2.9 27 23-49 235-261 (487)
162 KOG0646 WD40 repeat protein [G 57.9 12 0.00026 27.2 2.7 31 18-48 115-145 (476)
163 KOG0285 Pleiotropic regulator 57.9 11 0.00023 27.2 2.5 33 17-49 142-174 (460)
164 KOG1354 Serine/threonine prote 56.1 12 0.00026 26.8 2.5 26 23-48 22-47 (433)
165 KOG0643 Translation initiation 55.1 8.9 0.00019 26.6 1.7 27 22-48 283-309 (327)
166 PF10282 Lactonase: Lactonase, 54.5 27 0.00058 23.0 3.8 22 26-47 291-312 (345)
167 KOG1407 WD40 repeat protein [F 54.4 11 0.00024 26.0 2.1 26 22-47 227-252 (313)
168 KOG1273 WD40 repeat protein [G 54.2 13 0.00028 26.4 2.4 20 29-48 26-45 (405)
169 KOG0268 Sof1-like rRNA process 53.8 3.7 8.1E-05 29.3 -0.3 28 22-49 62-90 (433)
170 PRK01029 tolB translocation pr 53.6 22 0.00047 24.4 3.4 20 27-46 281-300 (428)
171 PF02239 Cytochrom_D1: Cytochr 53.3 20 0.00043 24.4 3.1 23 27-49 316-338 (369)
172 KOG0772 Uncharacterized conser 52.9 17 0.00037 27.2 2.9 25 24-48 165-189 (641)
173 KOG0277 Peroxisomal targeting 52.2 32 0.00069 23.8 4.0 34 16-49 137-171 (311)
174 KOG0319 WD40-repeat-containing 49.6 14 0.00029 28.4 2.0 27 23-49 460-486 (775)
175 KOG0650 WD40 repeat nucleolar 49.3 29 0.00062 26.5 3.6 31 19-49 393-423 (733)
176 KOG0650 WD40 repeat nucleolar 49.3 19 0.00041 27.4 2.7 24 26-49 607-630 (733)
177 KOG2377 Uncharacterized conser 48.7 30 0.00065 25.9 3.6 19 26-44 66-84 (657)
178 KOG1034 Transcriptional repres 47.8 12 0.00027 26.4 1.5 26 23-48 132-158 (385)
179 KOG1310 WD40 repeat protein [G 46.9 24 0.00051 26.9 2.9 20 28-48 275-294 (758)
180 KOG0265 U5 snRNP-specific prot 46.6 40 0.00086 23.6 3.8 33 17-49 299-331 (338)
181 KOG0274 Cdc4 and related F-box 46.5 46 0.001 24.1 4.2 32 16-49 321-352 (537)
182 KOG4328 WD40 protein [Function 45.7 27 0.00058 25.6 2.9 26 23-48 366-391 (498)
183 KOG0270 WD40 repeat-containing 45.5 27 0.00059 25.4 2.9 34 15-48 362-396 (463)
184 KOG0639 Transducin-like enhanc 45.3 29 0.00063 26.1 3.1 30 18-47 543-572 (705)
185 KOG0281 Beta-TrCP (transducin 44.3 6.1 0.00013 28.4 -0.4 29 19-49 393-421 (499)
186 KOG0306 WD40-repeat-containing 44.2 28 0.0006 27.1 2.9 26 23-48 104-129 (888)
187 KOG1548 Transcription elongati 44.2 56 0.0012 23.2 4.3 33 17-49 304-352 (382)
188 KOG1408 WD40 repeat protein [F 44.2 22 0.00048 27.9 2.4 24 24-47 457-480 (1080)
189 KOG0308 Conserved WD40 repeat- 43.9 38 0.00083 25.9 3.6 27 23-49 210-236 (735)
190 KOG4227 WD40 repeat protein [G 42.8 26 0.00056 25.8 2.5 30 16-45 347-376 (609)
191 KOG1524 WD40 repeat-containing 41.8 39 0.00085 25.6 3.3 27 19-45 249-275 (737)
192 KOG1272 WD40-repeat-containing 41.8 30 0.00064 25.6 2.7 25 24-48 291-315 (545)
193 KOG4547 WD40 repeat-containing 41.0 41 0.00088 24.9 3.3 29 17-45 135-163 (541)
194 KOG0302 Ribosome Assembly prot 40.2 35 0.00077 24.6 2.8 28 20-47 341-369 (440)
195 PF06977 SdiA-regulated: SdiA- 39.9 50 0.0011 21.6 3.3 18 26-43 21-38 (248)
196 KOG4378 Nuclear protein COP1 [ 39.9 23 0.0005 26.6 1.9 16 30-45 254-269 (673)
197 COG5354 Uncharacterized protei 39.9 39 0.00084 25.2 3.0 30 16-45 264-293 (561)
198 COG3881 PRC-barrel domain cont 39.8 36 0.00077 21.8 2.5 16 27-42 22-37 (176)
199 KOG4640 Anaphase-promoting com 39.7 41 0.00089 25.5 3.2 24 25-48 60-84 (665)
200 KOG1587 Cytoplasmic dynein int 39.6 41 0.00089 24.7 3.1 25 24-48 240-265 (555)
201 KOG1034 Transcriptional repres 39.1 37 0.00081 24.1 2.8 26 23-48 178-203 (385)
202 KOG0288 WD40 repeat protein Ti 37.7 42 0.00091 24.4 2.9 28 20-47 424-452 (459)
203 PF04762 IKI3: IKI3 family; I 37.3 68 0.0015 24.8 4.1 31 17-47 294-325 (928)
204 KOG2111 Uncharacterized conser 36.5 49 0.0011 23.3 3.0 28 21-48 176-203 (346)
205 KOG1897 Damage-specific DNA bi 36.1 40 0.00086 27.0 2.7 23 26-48 530-558 (1096)
206 TIGR02276 beta_rpt_yvtn 40-res 35.1 47 0.001 14.6 2.0 12 36-47 1-12 (42)
207 PF00930 DPPIV_N: Dipeptidyl p 34.9 34 0.00074 22.5 2.0 20 29-48 103-122 (353)
208 KOG0289 mRNA splicing factor [ 34.6 50 0.0011 24.2 2.9 30 20-49 297-326 (506)
209 TIGR02658 TTQ_MADH_Hv methylam 34.5 69 0.0015 22.1 3.5 22 26-47 298-320 (352)
210 KOG2048 WD40 repeat protein [G 33.7 66 0.0014 24.6 3.4 27 17-43 60-86 (691)
211 COG3204 Uncharacterized protei 33.5 36 0.00079 23.6 2.0 18 26-43 85-102 (316)
212 KOG1920 IkappaB kinase complex 33.1 72 0.0016 26.0 3.7 28 17-44 100-127 (1265)
213 KOG0642 Cell-cycle nuclear pro 33.1 42 0.00091 25.1 2.3 25 24-48 529-553 (577)
214 KOG2048 WD40 repeat protein [G 32.9 56 0.0012 24.9 3.0 23 26-48 475-497 (691)
215 KOG3621 WD40 repeat-containing 32.4 48 0.001 25.4 2.6 20 25-44 123-142 (726)
216 PF08450 SGL: SMP-30/Gluconola 32.2 1.2E+02 0.0027 18.5 4.1 29 17-45 215-244 (246)
217 KOG2315 Predicted translation 32.1 87 0.0019 23.4 3.8 26 18-43 262-287 (566)
218 KOG1064 RAVE (regulator of V-A 31.5 58 0.0013 28.1 3.1 24 24-48 168-191 (2439)
219 PF02897 Peptidase_S9_N: Proly 30.7 69 0.0015 21.2 2.9 17 28-44 125-141 (414)
220 COG3386 Gluconolactonase [Carb 30.5 49 0.0011 22.2 2.2 13 31-43 167-179 (307)
221 PF13363 BetaGal_dom3: Beta-ga 29.9 72 0.0016 17.7 2.5 25 14-41 43-67 (79)
222 PF01731 Arylesterase: Arylest 29.8 65 0.0014 17.9 2.3 17 29-45 56-72 (86)
223 PF04841 Vps16_N: Vps16, N-ter 29.6 82 0.0018 21.7 3.2 18 27-44 217-234 (410)
224 PRK04043 tolB translocation pr 29.6 1.4E+02 0.003 20.6 4.4 21 25-45 231-251 (419)
225 KOG1064 RAVE (regulator of V-A 29.1 61 0.0013 28.0 2.8 26 23-48 2333-2358(2439)
226 KOG0274 Cdc4 and related F-box 28.5 1.4E+02 0.0031 21.6 4.4 33 17-49 239-272 (537)
227 PF07433 DUF1513: Protein of u 28.3 76 0.0017 21.7 2.9 19 27-45 217-235 (305)
228 KOG0316 Conserved WD40 repeat- 28.3 1.1E+02 0.0024 21.1 3.6 33 17-49 92-124 (307)
229 PF12657 TFIIIC_delta: Transcr 27.1 51 0.0011 19.8 1.7 15 29-43 7-21 (173)
230 KOG0276 Vesicle coat complex C 26.9 99 0.0022 23.9 3.4 31 17-47 88-118 (794)
231 KOG0315 G-protein beta subunit 26.7 1.3E+02 0.0029 20.8 3.8 32 18-49 75-106 (311)
232 KOG3914 WD repeat protein WDR4 25.8 65 0.0014 23.0 2.2 25 24-48 149-173 (390)
233 KOG0644 Uncharacterized conser 24.5 29 0.00063 27.5 0.3 20 19-38 267-286 (1113)
234 KOG0267 Microtubule severing p 24.4 79 0.0017 24.6 2.6 26 22-47 150-175 (825)
235 COG3211 PhoX Predicted phospha 24.2 89 0.0019 23.6 2.7 23 22-44 549-571 (616)
236 KOG0299 U3 snoRNP-associated p 23.6 92 0.002 22.8 2.7 29 21-49 239-267 (479)
237 KOG1275 PAB-dependent poly(A) 22.9 1.6E+02 0.0036 23.7 4.0 34 13-46 299-332 (1118)
238 PF07995 GSDH: Glucose / Sorbo 22.5 1.9E+02 0.0042 19.1 3.9 28 21-48 300-327 (331)
239 PF03088 Str_synth: Strictosid 22.4 1.3E+02 0.0028 16.8 2.7 15 30-44 60-74 (89)
240 KOG2315 Predicted translation 22.3 1.1E+02 0.0024 22.9 2.9 25 24-48 309-333 (566)
241 KOG0269 WD40 repeat-containing 22.2 56 0.0012 25.4 1.5 33 17-49 124-157 (839)
242 COG4831 Roadblock/LC7 domain [ 22.2 62 0.0013 19.2 1.4 16 27-42 13-28 (109)
243 PF14302 DUF4377: Domain of un 22.0 72 0.0016 17.3 1.6 17 17-34 55-71 (80)
244 KOG3617 WD40 and TPR repeat-co 21.7 1.5E+02 0.0033 24.1 3.6 29 16-44 91-119 (1416)
245 KOG1645 RING-finger-containing 21.5 34 0.00074 24.8 0.2 32 17-48 184-216 (463)
246 KOG2139 WD40 repeat protein [G 21.4 1.4E+02 0.0031 21.6 3.3 25 24-48 193-217 (445)
247 KOG0290 Conserved WD40 repeat- 21.4 1.3E+02 0.0028 21.3 2.9 26 22-47 283-309 (364)
248 PF14870 PSII_BNR: Photosynthe 21.0 1.5E+02 0.0032 20.0 3.1 27 20-46 138-164 (302)
249 PF02150 RNA_POL_M_15KD: RNA p 20.9 66 0.0014 15.0 1.1 12 32-43 1-13 (35)
No 1
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.48 E-value=3.3e-14 Score=96.20 Aligned_cols=49 Identities=53% Similarity=0.925 Sum_probs=40.3
Q ss_pred CCccCcccc-cccCCCCceEEecCCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898 1 MATFGAAAV-ATNQNPNKSIEVSQPPSDSVSSLCFSPKA-NILVATSWDNQ 49 (49)
Q Consensus 1 Ms~fg~~~~-~~~~~~~~~~~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~~ 49 (49)
||+||.++. .++.++++++||.+||+|+||+|+|||+. .+|+++|||++
T Consensus 1 ms~Fg~~~~~~~~~~~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~t 51 (347)
T KOG0647|consen 1 MSLFGSSASAQTTADPNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGT 51 (347)
T ss_pred CCccCCcccccccCCcccceecCCCcccchheeEeccccCceEEecccCCc
Confidence 899996542 22336789999999999999999999965 57779999985
No 2
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.5e-09 Score=73.41 Aligned_cols=33 Identities=39% Similarity=0.803 Sum_probs=30.9
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+++.+||.|+||+|+|+|+++.|+++|||++
T Consensus 4 ~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgs 36 (323)
T KOG1036|consen 4 NEFELENPPEDGISSVKFSPSSSDLLVSSWDGS 36 (323)
T ss_pred cccccCCCChhceeeEEEcCcCCcEEEEeccCc
Confidence 678999999999999999999999999999985
No 3
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.08 E-value=8.1e-06 Score=37.99 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=27.0
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.....+.+.|.+|+|+|++++|++++.|++
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~ 34 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGT 34 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCE
Confidence 3445688999999999999999999999973
No 4
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.75 E-value=2.5e-05 Score=58.25 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=31.7
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+.+++..+|+..|++|+|+|.++.|+++|||+|
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence 4778889999999999999999999999999986
No 5
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.22 E-value=0.0011 Score=27.47 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+.+.|.+|+|.|.++++++++.|++
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~ 35 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGT 35 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCe
Confidence 356789999999999999999998873
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.79 E-value=0.002 Score=43.86 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=25.5
Q ss_pred eEEecCCC-CCCeEEEEEcCCC--CeEEEEeccCC
Q 045898 18 SIEVSQPP-SDSVSSLCFSPKA--NILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p-~D~IS~l~Fsp~~--~~La~sSWD~~ 49 (49)
.+++...- .|.|++|+|+|+. -+++.+|||++
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 34555444 8999999999994 59999999985
No 7
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.45 E-value=0.0057 Score=41.95 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=29.4
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+....+|.+.|.+++|+|.+++|+++|+|++
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 456667799999999999999999999999975
No 8
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.0044 Score=42.22 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.7
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
...+.-+|.+|+|||.+++||++|.|.+
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccce
Confidence 3557789999999999999999999974
No 9
>PTZ00421 coronin; Provisional
Probab=96.00 E-value=0.01 Score=41.70 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.4
Q ss_pred cCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSP-KANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp-~~~~La~sSWD~~ 49 (49)
...+.+.|.+|+|+| ++++|+++|+|++
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 356889999999999 7889999999974
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.89 E-value=0.012 Score=34.00 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+.+.|++++|+|++++|++++.|+
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g 31 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDG 31 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCc
Confidence 36789999999999999999998776
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.83 E-value=0.015 Score=39.90 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=29.5
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.++....+.+.|+.+.|++++++|+++|+|+.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 567777889999999999999999999999873
No 12
>PTZ00421 coronin; Provisional
Probab=95.69 E-value=0.024 Score=39.89 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.3
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.....+.+.|.+|+|+|++++|+++++|++
T Consensus 161 ~~~l~~h~~~V~sla~spdG~lLatgs~Dg~ 191 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191 (493)
T ss_pred EEEEcCCCCceEEEEEECCCCEEEEecCCCE
Confidence 3444568899999999999999999999974
No 13
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.67 E-value=0.025 Score=28.63 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCeEEEEeccCC
Q 045898 27 DSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..|+.++|||+.++||.++-|+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~ 34 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGE 34 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCe
Confidence 45999999999999999998863
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.53 E-value=0.015 Score=40.01 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=28.7
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.-+-+...|+-.||+|.-+|+|--|+.+|||.+
T Consensus 306 e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 306 ERVGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred ceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 345566789999999999999999999999963
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.42 E-value=0.023 Score=40.94 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=26.1
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+-....+.+.|.+|+|||++++||.||-|+
T Consensus 445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred eEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 334457899999999999999999999887
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.15 E-value=0.013 Score=41.61 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=25.1
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
...+...|++++|.|+|++|+++|.|.+
T Consensus 257 l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred hhcchhhheeeeecCCCceeeecccccc
Confidence 4567899999999999999999999974
No 17
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.95 E-value=0.033 Score=38.25 Aligned_cols=30 Identities=13% Similarity=0.395 Sum_probs=26.2
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.....+.++|++|.+++-.+.++++|||++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ 117 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKT 117 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCcc
Confidence 334578999999999999999999999985
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.66 E-value=0.086 Score=30.34 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+...|.+++|+|++++|++++.|+.
T Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 258 SGHTNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred cccCCcEEEEEECCCCCEEEEecCCCe
Confidence 466789999999999999999999873
No 19
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.59 E-value=0.041 Score=42.10 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=24.8
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.....+..+|+|++|||+|++||+||=|+
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcc
Confidence 33456889999999999999999999774
No 20
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=94.48 E-value=0.053 Score=38.68 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=30.0
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+.|.+...+.+.|-+|.|||+|.+||+||=|++
T Consensus 335 gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 335 GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred CcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 3667778889999999999999999999998864
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.43 E-value=0.073 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=29.1
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
...+++-.++...|++|+|||.|++|++++=|+
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 466888899999999999999999999998554
No 22
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=94.21 E-value=0.082 Score=35.99 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=29.2
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
++.++--.|++--|.+|+|||...+|+.+|+|.
T Consensus 263 ~r~iq~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred CceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence 466667789999999999999999999999996
No 23
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.18 E-value=0.089 Score=36.03 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=28.8
Q ss_pred CceEEe-cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEV-SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l-~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+++. ...+-..|.+|+|||+|.+-|+||=|++
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 456666 4778899999999999999999998875
No 24
>PTZ00420 coronin; Provisional
Probab=94.10 E-value=0.12 Score=37.39 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=25.8
Q ss_pred EEecCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPK-ANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~-~~~La~sSWD~~ 49 (49)
+.....|.+.|.+|+|+|. +++|+++|.|++
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt 98 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLT 98 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe
Confidence 4445678999999999997 789999998874
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.77 E-value=0.093 Score=37.97 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 25 PSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.+.|.+|+|+|++++||+++.|++
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~ 506 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKK 506 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCE
Confidence 6889999999999999999998863
No 26
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.52 E-value=0.067 Score=37.48 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.8
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+...+.-.|++|+||++|+.|+++|-|.
T Consensus 59 r~lsaH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 59 RMLSAHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred hhhhccccceeEEEecCCCCEeeeecCCc
Confidence 34567888999999999999999999775
No 27
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=93.42 E-value=0.15 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
-+...+..|+|||+|++|++++.++
T Consensus 98 ~~~~~~n~i~wsP~G~~l~~~g~~n 122 (194)
T PF08662_consen 98 FGTQPRNTISWSPDGRFLVLAGFGN 122 (194)
T ss_pred ecCCCceEEEECCCCCEEEEEEccC
Confidence 3567788999999999999887553
No 28
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=93.36 E-value=0.099 Score=39.88 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.2
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..++++.|.+++|||+|+.|+++|-|++
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCc
Confidence 3679999999999999999999998874
No 29
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=93.25 E-value=0.08 Score=37.21 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+...+.+.|++++||.+|+.||..|=|+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr 108 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDR 108 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCc
Confidence 344578999999999999999999998776
No 30
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=93.17 E-value=0.097 Score=39.28 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.4
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
...|.=+|+.|+|||++++|++.|-|.+
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCce
Confidence 3468889999999999999999998864
No 31
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.11 E-value=0.15 Score=35.85 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=26.6
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+.+...+.|.+.|.+|+|+|+|.+||.+|=-|
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence 44555678999999999999999999988544
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.81 E-value=0.2 Score=34.30 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.3
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+....+|+--|-+++||++|++||..|-|++
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 4556789999999999999999999999874
No 33
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.80 E-value=0.12 Score=38.59 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.5
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..|+.+.+..+|=+++||++|++||+++=|+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~ 289 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDG 289 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCc
Confidence 3456678999999999999999999998665
No 34
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=92.72 E-value=0.27 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=18.6
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 22 SQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
.......++.++|||+|++|++++
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEE
Confidence 333445689999999999988765
No 35
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=92.66 E-value=0.15 Score=36.50 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.3
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+...|=+++|||++..|++||=|.+
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~T 138 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTT 138 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCce
Confidence 578899999999999999999998764
No 36
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.60 E-value=0.13 Score=35.69 Aligned_cols=28 Identities=29% Similarity=0.486 Sum_probs=24.1
Q ss_pred cCCCCCCeEEEEEcCCCC--eEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKAN--ILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~--~La~sSWD~~ 49 (49)
...|+..|..++|-+..+ .|+.||||++
T Consensus 109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT 138 (347)
T KOG0647|consen 109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKT 138 (347)
T ss_pred eeecccceeEEEEecCCCcceeEecccccc
Confidence 346899999999998764 9999999986
No 37
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=92.36 E-value=0.13 Score=37.79 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=24.3
Q ss_pred EEecCCCCC--CeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSD--SVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D--~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.+...|.+ .|++|.||++|++||+=+.|.+
T Consensus 355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t 387 (641)
T KOG0772|consen 355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT 387 (641)
T ss_pred eEeeeccCCCCceeEEEeccccchhhhccCCCc
Confidence 444455554 9999999999999999887753
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.84 E-value=0.4 Score=34.78 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.3
Q ss_pred ceEEecCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSP-KANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp-~~~~La~sSWD~~ 49 (49)
+.+.....+.+.|.+|+|+| ++++|+++|.|++
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence 33444567889999999997 6789999999873
No 39
>PTZ00420 coronin; Provisional
Probab=91.70 E-value=0.33 Score=35.13 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=22.5
Q ss_pred cCCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKAN-ILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~-~La~sSWD~~ 49 (49)
...+.+.|.+|+|+|++. +|+++|+|++
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 345778999999999986 5678899874
No 40
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=91.65 E-value=0.19 Score=35.20 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=24.7
Q ss_pred EecCCCCCCeEEEEEcCCC-CeEEEEeccC
Q 045898 20 EVSQPPSDSVSSLCFSPKA-NILVATSWDN 48 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~ 48 (49)
.+...|.|-|+.|+|.|+. ++|++||=||
T Consensus 159 ~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 159 QLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred hhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 3456799999999999985 8999999886
No 41
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=91.59 E-value=0.37 Score=35.51 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=24.8
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+.+..- +..|+.++|+|+|.+||++|=|+
T Consensus 440 lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 440 LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred eEEEEec-CCceEEEEEcCCCCEEEEecCCC
Confidence 3444444 89999999999999999999886
No 42
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=91.54 E-value=0.21 Score=35.72 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.1
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
-..+.--|..+.|||+++++|++|.|++
T Consensus 363 mtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 363 MTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred hhchhhheeeEEECCCccEEEEeecccc
Confidence 3456678999999999999999999974
No 43
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=91.50 E-value=0.25 Score=35.84 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..|...|++|+|-|.+.+|+++|-|+|
T Consensus 356 ~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred ecccCceEEEEECCCCceEEEecCCCe
Confidence 348899999999999999999999975
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=91.39 E-value=0.086 Score=38.02 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=27.6
Q ss_pred CceEEecCCCCCCeEEEEEcC-CCCeEEEEeccC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSP-KANILVATSWDN 48 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp-~~~~La~sSWD~ 48 (49)
.+.+.....++++||+|+|.| .+.+|++++-|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~ 237 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDG 237 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCc
Confidence 355666788999999999999 678999988776
No 45
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=91.29 E-value=0.31 Score=37.47 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=27.1
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+..++...|.+|.|.|++++||+++.||+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 3445788999999999999999999999984
No 46
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=91.11 E-value=0.11 Score=35.67 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=27.3
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+.+.+..-+.++|.+|+|+|+..++|++|=|.
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 44556677899999999999999999999775
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=90.80 E-value=0.35 Score=34.32 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=25.7
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+.....|++.|++|.|++ ...+.++|||-+
T Consensus 252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT 282 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT 282 (423)
T ss_pred ceEEecccccceeeEEEcC-CCceEeecccce
Confidence 3556678999999999999 667888899964
No 48
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.15 E-value=0.44 Score=36.75 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=29.9
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
-+.+.+...+.--|.+|+|+|++.+|++.|=|++
T Consensus 119 wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 119 WKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS 152 (942)
T ss_pred eeEEEEEecCCCccceeccCCCccEEEEecccce
Confidence 3677788889999999999999999999998864
No 49
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.91 E-value=0.25 Score=35.37 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCeEEEEeccCC
Q 045898 29 VSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 29 IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+++.|||++.++|+||-|+.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred cceeEECCCCceeeeccCCCc
Confidence 899999999999999998873
No 50
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=89.64 E-value=0.41 Score=32.89 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=26.8
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.....+|.--|+++.-++++++.+++|||++
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccce
Confidence 4445668899999999999999999999984
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.54 E-value=0.45 Score=32.42 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
--.+.|.+++||++++.++++|-|++
T Consensus 181 y~g~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 181 YFGHPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred hcCCcceeEEecCCCCEEEEeeccce
Confidence 35688999999999999999998864
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.86 E-value=0.51 Score=36.07 Aligned_cols=28 Identities=29% Similarity=0.518 Sum_probs=24.9
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+..|-+.|.++++||+|+++|+|+=|++
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCc
Confidence 3578899999999999999999998874
No 53
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=88.61 E-value=0.27 Score=34.93 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=25.5
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.+-..+...|-+|.|||.|+-++++|.|++
T Consensus 265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred chhhcccceeEEEeccCCCcchhccccccce
Confidence 3344556778999999999999999999985
No 54
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=88.45 E-value=0.63 Score=33.19 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.4
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.....++..|..|+|+|++++||+++=++
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 34467889999999999999999987654
No 55
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=88.40 E-value=0.4 Score=32.92 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=25.2
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.++++.+ -+|+.++.-|++++||.+.||+.
T Consensus 245 ~e~~lkn---pGv~gvrIRpD~KIlATAGWD~R 274 (323)
T KOG0322|consen 245 KEITLKN---PGVSGVRIRPDGKILATAGWDHR 274 (323)
T ss_pred ceEEecC---CCccceEEccCCcEEeecccCCc
Confidence 5666664 48999999999999999999973
No 56
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.94 E-value=1.2 Score=31.06 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=24.3
Q ss_pred ceEEecCCCC-CCeEEEEEcCCCCeEEEEeccC
Q 045898 17 KSIEVSQPPS-DSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~-D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
...|+..+-. -.|-+|+|||++.+|||+|=-+
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 4455555543 5699999999999999988544
No 57
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=87.93 E-value=0.59 Score=33.35 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=25.7
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+.+-+--.|++|+||++|..|+++|=|+
T Consensus 335 ~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 335 AVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred EEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 445566778999999999999999999887
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=87.68 E-value=0.91 Score=33.48 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.9
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.++-..++..+|=+|.|||++..++..|=|++
T Consensus 227 ~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred EecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 34445678899999999999998988887763
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.58 E-value=0.49 Score=34.21 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 15 PNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 15 ~~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
|.+...+...++|-|==+.||++|++||++|=|.+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~T 247 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDST 247 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCce
Confidence 34556677889999999999999999999997764
No 60
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=87.54 E-value=0.8 Score=33.26 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=27.9
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
++.....|-..+|++|.|.|...+|+++.-|++
T Consensus 204 kDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~ 236 (514)
T KOG2055|consen 204 KDANAAHPSHGGITSVQFHPTAPLLLVAGLDGT 236 (514)
T ss_pred cccccCCcCcCCceEEEecCCCceEEEecCCCc
Confidence 455556777899999999999999999998874
No 61
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=87.23 E-value=0.74 Score=31.45 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
-+...|-+.+|||.+.+||.+|=|++
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCce
Confidence 35689999999999999999998874
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=87.23 E-value=0.77 Score=32.64 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+|.++|-+|.-.+++..++++|||++
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccce
Confidence 489999999999999999999999974
No 63
>PRK01742 tolB translocation protein TolB; Provisional
Probab=87.15 E-value=0.84 Score=30.89 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
...+.|..++|||+++.|+..|+++
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~ 225 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFEN 225 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecC
Confidence 3457899999999999999988864
No 64
>KOG4328 consensus WD40 protein [Function unknown]
Probab=86.87 E-value=0.71 Score=33.42 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=25.7
Q ss_pred EEecCCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKA-NILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~~ 49 (49)
+-+-.++...|++|.|+|.. ..++++|.||+
T Consensus 227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred eEEeccCCccccceEecCCChhheeeeccCce
Confidence 55667888999999999975 57778899985
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.70 E-value=0.64 Score=34.91 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeccC
Q 045898 26 SDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.|.|++++|+|+|+..++|+.+|
T Consensus 451 ~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 451 RDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred hhhheeEEeccCCceEEEEEecc
Confidence 48999999999999999999876
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=86.57 E-value=0.61 Score=34.37 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeccC
Q 045898 25 PSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
|+-.|-+|+|||+..+||.+|-|.
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDT 552 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccc
Confidence 778999999999999999999885
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=1.3 Score=30.50 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=23.1
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
..+.+..++..-...|+|||+|+.|+.+.
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence 45666667789999999999999777654
No 68
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.41 E-value=0.94 Score=32.08 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+...|+.++|+|-|++|++..=|++
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCc
Confidence 578999999999999999999887764
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.18 E-value=0.95 Score=34.65 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeccCC
Q 045898 26 SDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+|-|.++++||++++||++=-|++
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCe
Confidence 588999999999999999866653
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.93 E-value=0.91 Score=32.23 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=26.9
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
-+.-..++...|.+|+|+|++.+|+.+|-|.+
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcc
Confidence 34445689999999999999999999998864
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=85.90 E-value=0.52 Score=33.52 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=20.9
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.-..-+.+-+|||++++|++||=|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDG 235 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDG 235 (508)
T ss_pred ccccchhheeeCCCCceEeeccccc
Confidence 3446677899999999999999876
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=85.50 E-value=1.2 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..++++|.+|+||+++++-+.+|-||
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG 283 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDG 283 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCC
Confidence 34779999999999999999999776
No 73
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.08 E-value=1 Score=33.87 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.5
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
...+++.|-+|.||.++..||+++=|++
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred hhcccCceeEEEEecCCCEEEecCCCCe
Confidence 3567999999999999999999997763
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.68 E-value=0.9 Score=32.79 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCeEEEEeccC
Q 045898 27 DSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
-.|++|+-.|..++||.|||++
T Consensus 381 ~Witsla~i~~sdL~asGS~~G 402 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSG 402 (479)
T ss_pred cceeeeEecccCceEEecCCCC
Confidence 3899999999999999999997
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.39 E-value=1.1 Score=32.47 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
..+.++|+-|.|||+.++|++.+-|
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCch
Confidence 5688999999999999988887654
No 76
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=84.33 E-value=1.2 Score=30.86 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=29.4
Q ss_pred CCceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 15 PNKSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 15 ~~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
....+++...+...|-.++|.|++..||+++-|.
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr 69 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDR 69 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcc
Confidence 3466777888999999999999999999998874
No 77
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=84.30 E-value=2.9 Score=24.74 Aligned_cols=32 Identities=41% Similarity=0.589 Sum_probs=23.5
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEE-eccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVAT-SWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~s-SWD~ 48 (49)
..+.....+.+.|.+++|+|+++.++++ +.|+
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 3455555689999999999998845554 7665
No 78
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.98 E-value=2.2 Score=21.47 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=13.1
Q ss_pred CCeEEEEEcCCC---CeEEEE
Q 045898 27 DSVSSLCFSPKA---NILVAT 44 (49)
Q Consensus 27 D~IS~l~Fsp~~---~~La~s 44 (49)
.+|.+++|||.. ++|+-+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~ 21 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWA 21 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEE
Confidence 368999999853 577653
No 79
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=83.79 E-value=1.2 Score=31.38 Aligned_cols=30 Identities=37% Similarity=0.443 Sum_probs=22.7
Q ss_pred CceEEecCCCC-CCeEEEEEcCCCCeEEEEe
Q 045898 16 NKSIEVSQPPS-DSVSSLCFSPKANILVATS 45 (49)
Q Consensus 16 ~~~~~l~~~p~-D~IS~l~Fsp~~~~La~sS 45 (49)
.+.+|...+-. -.|-+|+|+|++++|+++|
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 34555554433 6799999999999999987
No 80
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=83.23 E-value=1.3 Score=34.30 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.1
Q ss_pred CCeEEEEEcCCCCeEEEEeccC
Q 045898 27 DSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..++.++|||+|++||++.=||
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCC
Confidence 4499999999999999998665
No 81
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=83.14 E-value=1.7 Score=30.57 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.3
Q ss_pred ecCCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898 21 VSQPPSDSVSSLCFSPKAN-ILVATSWDNQ 49 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~-~La~sSWD~~ 49 (49)
...++.|.|-+|.|||... .|+.+|-|+.
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCce
Confidence 3468999999999999986 7788888863
No 82
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=83.12 E-value=2.3 Score=30.38 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.5
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+.+..---.+||-|+|||+++.|.+++.|.
T Consensus 229 ~~~pL~~~glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 229 QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred CcccccccCCCceeeEEEcCCCCEEEEecccc
Confidence 34444423348999999999999888878775
No 83
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=82.67 E-value=1.5 Score=33.21 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.4
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
-+..++.|+|.+|.|.|.|.+|++.|=|.|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccc
Confidence 345678999999999999999999887753
No 84
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=82.61 E-value=0.69 Score=32.98 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898 25 PSDSVSSLCFSPKA-NILVATSWDNQ 49 (49)
Q Consensus 25 p~D~IS~l~Fsp~~-~~La~sSWD~~ 49 (49)
++++|-+|+|||+- ..|+++|.|++
T Consensus 256 H~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred cccchhhhccCCccCceEEeeecCce
Confidence 78999999999986 68899999874
No 85
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=82.32 E-value=1.4 Score=31.34 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.9
Q ss_pred CCeEEEEEcCCCCeEEEEeccC
Q 045898 27 DSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
=+|-.+.|||-+++|++||.|+
T Consensus 211 lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred cceeEEEeccccceEEeeccch
Confidence 5677889999999999999985
No 86
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=82.32 E-value=1.6 Score=33.43 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=26.0
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
++.-...++|.|=.|+|||+|+++|.-+=|++
T Consensus 712 ~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 712 LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred hhheeccCcCceeEEEECCCCcceeeeecCce
Confidence 33334689999999999999999998777763
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=82.18 E-value=2.8 Score=28.85 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=30.2
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
++-++.-.+|.+.|.+|+-+|-.+.++++|-|++
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t 123 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT 123 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCe
Confidence 5667777999999999999999999999999864
No 88
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=81.81 E-value=1.2 Score=31.20 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.7
Q ss_pred ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 21 VSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+..|...+|.+|.|.|+.-+|++||-|++
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcc
Confidence 45778899999999999999999998863
No 89
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.72 E-value=1.7 Score=33.03 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=28.4
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.-.-+..+|+-+|=+|+|||..++||.+|=|+|
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence 344556889999999999999999999998875
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.94 E-value=0.72 Score=31.59 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.8
Q ss_pred cCCCCCCeEEEEEcCCC-CeEEEEecc
Q 045898 22 SQPPSDSVSSLCFSPKA-NILVATSWD 47 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~-~~La~sSWD 47 (49)
.+.+.=.|.+|+|||.. .+||++|.|
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhcccc
Confidence 37889999999999986 789998887
No 91
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.80 E-value=2 Score=30.05 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCCCCCeEEEEEcCCC----CeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKA----NILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~----~~La~sSWD~ 48 (49)
..++|.|.+|+|+|+- .+||+++=||
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 3677999999999983 5889888764
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=80.71 E-value=1.3 Score=31.33 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=22.4
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEE
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVAT 44 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~s 44 (49)
..-++..-+...|++|.|+|+|++++..
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcEEeee
Confidence 3345567788999999999999988763
No 93
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=80.58 E-value=1.7 Score=30.90 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=17.9
Q ss_pred CCCCeEEEEEcCCCC-eEEEEecc
Q 045898 25 PSDSVSSLCFSPKAN-ILVATSWD 47 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~-~La~sSWD 47 (49)
-.+++|+++|||+|+ +|..++.|
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~ 113 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFD 113 (447)
T ss_pred CCCcceeeeECCCcceEeeeecce
Confidence 458999999999995 66666554
No 94
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.58 E-value=3.2 Score=18.94 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=13.4
Q ss_pred CeEEEEEcCCCCeEEEEe
Q 045898 28 SVSSLCFSPKANILVATS 45 (49)
Q Consensus 28 ~IS~l~Fsp~~~~La~sS 45 (49)
......|||+++.|+-+|
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 566789999999887654
No 95
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.33 E-value=1.2 Score=31.50 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=27.0
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.....|.-.||+++|-|.++++++.|-|++
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 4455789999999999999999999998864
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=80.17 E-value=2 Score=33.25 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=21.7
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
-|.+...-.+++|+|||+|+++|+|-
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGE 97 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGE 97 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecc
Confidence 34456677999999999999999975
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.02 E-value=1.7 Score=31.44 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKAN-ILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~-~La~sSWD~~ 49 (49)
..++|-|.+..|+|..+ ++++||+|++
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCce
Confidence 58999999999999864 8899999974
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=79.80 E-value=1.7 Score=30.67 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=25.4
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+..--+.|.|++|.|.|...+|+++|-|++
T Consensus 166 RTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 166 RTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eehhhccCcccceeecchhheEEeccCCCe
Confidence 333447899999999999999999999974
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=79.11 E-value=3.9 Score=29.65 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.9
Q ss_pred CceEEecCCCCC--CeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSD--SVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D--~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+..+.....+.+ .|+||+.+-+|.+|++|+=|++
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK 300 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence 466777788888 9999999999999999986653
No 100
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=78.76 E-value=3.4 Score=28.74 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=27.7
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+..++...+..-|.++.|++++++|+++|=|+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDG 77 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDG 77 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCC
Confidence 44467789999999999999999999999765
No 101
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=77.98 E-value=3.6 Score=31.44 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=25.8
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
...+|+-..-+++|.+.+|||++.+|+...=+
T Consensus 110 ~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~ 141 (928)
T PF04762_consen 110 EDEIEIVGSVDSGILAASWSPDEELLALVTGE 141 (928)
T ss_pred CceeEEEEEEcCcEEEEEECCCcCEEEEEeCC
Confidence 46677777788999999999999888766533
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.80 E-value=2.6 Score=32.30 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..++..|.++-|+|++.+||+|+-|+.
T Consensus 217 ~AH~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 217 TAHNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred hcccCceEEEeecCCCceeeecCCCcc
Confidence 578999999999999999999998873
No 103
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=77.66 E-value=4.6 Score=21.01 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.6
Q ss_pred CCeEEEEEcCCCCeEEEEec
Q 045898 27 DSVSSLCFSPKANILVATSW 46 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSW 46 (49)
|.+.+++.-|++++|+++.-
T Consensus 1 d~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 1 DRAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred CceEEEEECCCCcEEEEEEe
Confidence 56788999999999998853
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.15 E-value=3.6 Score=28.13 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=26.0
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
...+..+-.|.+=++.||+.|++|+++.=|+
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCc
Confidence 3456666779999999999999999987775
No 105
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=76.92 E-value=3.4 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.5
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
-....+.|+|+++.||-++.+||.+--++
T Consensus 100 ~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 100 GELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred eEecCCCCceEEEEEccCceEEEecCCCc
Confidence 33457899999999999999999987665
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=76.38 E-value=4 Score=29.69 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+++..|.+|+||-||-+|++++=|+
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCC
Confidence 45889999999999999999988665
No 107
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=76.31 E-value=3.9 Score=28.16 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.1
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.+.+.-.-=+|+|+|.|++||+||=|
T Consensus 185 i~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred cccCCcceEEEEECCCCceEeecccc
Confidence 34555555689999999999999844
No 108
>PRK05137 tolB translocation protein TolB; Provisional
Probab=76.23 E-value=5.7 Score=26.85 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEecc
Q 045898 24 PPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.+...|...+|||+++.|+..+.+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~ 222 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYA 222 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEec
Confidence 456789999999999999887764
No 109
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=75.89 E-value=2.4 Score=31.91 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+++..|.+|.|..+|.+|++||-|.
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~ 72 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDT 72 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcc
Confidence 58999999999999999999999763
No 110
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=75.61 E-value=7.3 Score=23.05 Aligned_cols=29 Identities=41% Similarity=0.562 Sum_probs=22.7
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
........+.+.|..++|+|+++.+++++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 174 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGS 174 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecC
Confidence 34455567889999999999998777765
No 111
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.05 E-value=5.8 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=19.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEecc
Q 045898 25 PSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
..+.+...+|||+++.|+..+++
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~ 219 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFE 219 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEec
Confidence 34689999999999999887765
No 112
>PRK00178 tolB translocation protein TolB; Provisional
Probab=74.59 E-value=6.3 Score=26.32 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=20.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
...+.|...+|||+++.|+..++++
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~ 220 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQ 220 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCC
Confidence 4467789999999999998877653
No 113
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=74.50 E-value=6.7 Score=25.08 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=19.2
Q ss_pred eEEecCCCCC-CeEEEEEcCCCCeEEEE
Q 045898 18 SIEVSQPPSD-SVSSLCFSPKANILVAT 44 (49)
Q Consensus 18 ~~~l~~~p~D-~IS~l~Fsp~~~~La~s 44 (49)
.+++.-+... .|++|++||+|..+|+-
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVV 129 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEE
Confidence 3445544444 89999999999777653
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=74.43 E-value=4.3 Score=24.37 Aligned_cols=21 Identities=29% Similarity=0.486 Sum_probs=17.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEe
Q 045898 25 PSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~~La~sS 45 (49)
....|.+|+|+|++++|++++
T Consensus 247 ~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 247 VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred eCCCcceEEECCCCCEEEEEc
Confidence 346788999999999888763
No 115
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=74.16 E-value=3 Score=30.05 Aligned_cols=28 Identities=11% Similarity=0.206 Sum_probs=23.8
Q ss_pred ecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 21 VSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+...+++.|+++.||+++++|++++=|+
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG 160 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGG 160 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCc
Confidence 3467999999999999999999987554
No 116
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=73.80 E-value=3 Score=23.60 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=18.9
Q ss_pred CCCCCeEEEEEcCCCCeEEEEe
Q 045898 24 PPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sS 45 (49)
.+...|++|+|.|--+.|.+|.
T Consensus 7 ~~~~~v~~~~F~PfEDvLgvGh 28 (80)
T PF08149_consen 7 KPGSPVESLRFCPFEDVLGVGH 28 (80)
T ss_pred CCCCeeeeeEEechHHeeEeec
Confidence 5789999999999888888764
No 117
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=73.50 E-value=1.2 Score=34.13 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=27.6
Q ss_pred CceEEecCCCCCCeEEEEEcCCCC-eEEEEeccC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKAN-ILVATSWDN 48 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~-~La~sSWD~ 48 (49)
.+++-+...++|.|.+|.|||-.+ +||.+|-|.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~ 102 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDE 102 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCCC
Confidence 467888999999999999999886 667777664
No 118
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=73.44 E-value=1.6 Score=31.11 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+|.|-+|.||.++.+||+||=|++
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCc
Confidence 36799999999999999999998874
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=73.26 E-value=3.9 Score=29.51 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPK-ANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~-~~~La~sSWD~~ 49 (49)
.-+++-|++|.|.|. ...|+.||.|++
T Consensus 283 ~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 283 THHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred hhcCCceeEEEecCCCceEEEeccccce
Confidence 357899999999997 589999999974
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=73.15 E-value=4.8 Score=29.39 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=20.0
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
+.|=.-|+|++|||.+-+||+|-=+
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCC
Confidence 3445778999999999999998543
No 121
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=73.00 E-value=3.8 Score=30.51 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeccC
Q 045898 26 SDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.++|..++|||++++||+-|=|+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDG 312 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDG 312 (636)
T ss_pred cccccceeEcCCCceEEEEecCc
Confidence 46999999999999999988876
No 122
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=72.25 E-value=8 Score=24.72 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEec
Q 045898 24 PPSDSVSSLCFSPKANILVATSW 46 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSW 46 (49)
++..+...++|+|++++|.++..
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEec
Confidence 45677889999999999988765
No 123
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=72.09 E-value=5.1 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.6
Q ss_pred ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 21 VSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
-...++.-|-+..|||++++||++|=|++
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecCCce
Confidence 34568889999999999999999987764
No 124
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=71.53 E-value=10 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
....|+|-++..||++.+||+-.-+|
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG 251 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSG 251 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCC
Confidence 34679999999999999999877655
No 125
>PRK02889 tolB translocation protein TolB; Provisional
Probab=71.40 E-value=6.5 Score=26.65 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.5
Q ss_pred CCCCCeEEEEEcCCCCeEEEEecc
Q 045898 24 PPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
...+.|.+.+|||+++.|+..+.+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~ 216 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFE 216 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEcc
Confidence 345788999999999999887754
No 126
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=70.47 E-value=6.5 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred CCCeEEEEEcCCCCeEEEEecc
Q 045898 26 SDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD 47 (49)
++.|++|+|+++|++||+|-=+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred CCceEEEEECCCCCEEEEeecC
Confidence 8999999999999999998643
No 127
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=70.36 E-value=5.6 Score=25.41 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCeEEEEecc
Q 045898 27 DSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD 47 (49)
+..+.|+|+|++++|.+++|.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~ 55 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRP 55 (330)
T ss_pred CCCccEEECCCCCEEEEEECC
Confidence 668889999999999988874
No 128
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=69.58 E-value=3.3 Score=29.51 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=13.4
Q ss_pred CCeEEEEEcCCCCeEEE
Q 045898 27 DSVSSLCFSPKANILVA 43 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~ 43 (49)
..||+|+||++|+++++
T Consensus 273 sSISDvKFs~sGryils 289 (433)
T KOG1354|consen 273 SSISDVKFSHSGRYILS 289 (433)
T ss_pred hhhhceEEccCCcEEEE
Confidence 36999999999865544
No 129
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=69.16 E-value=4.4 Score=28.71 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.0
Q ss_pred CCCeEEEEEcCCC-CeEEEEeccC
Q 045898 26 SDSVSSLCFSPKA-NILVATSWDN 48 (49)
Q Consensus 26 ~D~IS~l~Fsp~~-~~La~sSWD~ 48 (49)
...||+++|+|.. +.||++|...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q 230 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQ 230 (406)
T ss_pred cceeeeeeccCCCCcceeeecccc
Confidence 5789999999965 6999998653
No 130
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=68.78 E-value=7.1 Score=25.53 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+++.+...+|||+++.|+..++++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~ 211 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFES 211 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCC
Confidence 3566788999999999999887653
No 131
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=68.70 E-value=5.4 Score=29.75 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=17.9
Q ss_pred CCeEEEEEcCCCCeEEEEecc
Q 045898 27 DSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD 47 (49)
.+.-+|+|||+++++++|.=|
T Consensus 333 GGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred cceEEEEEcCCccEEEecCCc
Confidence 678899999999999987644
No 132
>PRK01742 tolB translocation protein TolB; Provisional
Probab=68.13 E-value=5 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred EEEEEcCCCCeEEEEeccC
Q 045898 30 SSLCFSPKANILVATSWDN 48 (49)
Q Consensus 30 S~l~Fsp~~~~La~sSWD~ 48 (49)
..+.|+|++++|+.+++|+
T Consensus 375 ~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred CCceECCCCCEEEEEEcCC
Confidence 5677888888888888775
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=68.01 E-value=7.7 Score=27.78 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=22.5
Q ss_pred cCCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKA-NILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~-~~La~sSWD~~ 49 (49)
...++-.|.+++|.|-+ .+||++|=|++
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 45578889999999965 68899987764
No 134
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=67.37 E-value=4.4 Score=30.98 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+.+=+.|.|.+|.||++|-.|++|.|-+
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccce
Confidence 445566889999999999999999999864
No 135
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=66.75 E-value=4.3 Score=28.85 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.2
Q ss_pred CCCeEEEEEcCCCCeEEE
Q 045898 26 SDSVSSLCFSPKANILVA 43 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~ 43 (49)
...||+++|||+++++++
T Consensus 280 vsSISD~kFs~ngryIls 297 (460)
T COG5170 280 VSSISDFKFSDNGRYILS 297 (460)
T ss_pred hhhhcceEEcCCCcEEEE
Confidence 467999999999965544
No 136
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=66.29 E-value=2.5 Score=30.80 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=27.1
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.++.-..++-+|.+++|++.+..++++|.|+.
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 344455679999999999999998999998863
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=66.17 E-value=6.5 Score=30.48 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=26.3
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
....-...+.|.|-+|+||-+|+++|+|+=|+
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCce
Confidence 33444567899999999999999999998775
No 138
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=65.54 E-value=6 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=26.0
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.++...-++-.|++|+|||+..+++.+|=|++
T Consensus 182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred eeechhhhccccccccccCCcceEEecccCcc
Confidence 34444567789999999999999999998864
No 139
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=64.14 E-value=1.9 Score=19.12 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=6.8
Q ss_pred EEcCCCCeE
Q 045898 33 CFSPKANIL 41 (49)
Q Consensus 33 ~Fsp~~~~L 41 (49)
.|||+|+++
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 589998753
No 140
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.98 E-value=5.2 Score=28.41 Aligned_cols=30 Identities=33% Similarity=0.383 Sum_probs=23.0
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.-++..|.-.|++|.|+|+.+.++.-|-|.
T Consensus 317 ~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 317 QYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred EeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 344567889999999999998877655543
No 141
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=63.87 E-value=7 Score=28.24 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.0
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.++...+...|-+|+|.|-|.+||.+|=|++
T Consensus 343 ~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 343 GEIPPAHDGEIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred cCCCcccccceeeeeccccceeEeecCCCcc
Confidence 4455668899999999999999999987753
No 142
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=63.29 E-value=9.4 Score=29.69 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=17.5
Q ss_pred CCeEEEEEcCCCCeEEEEecc
Q 045898 27 DSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD 47 (49)
+....|+|||++++||+..=|
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred CcceeeEECCCCCEEEEEEec
Confidence 456789999999999997655
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=63.21 E-value=12 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.8
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+++. +.|-|-++.|+-+|.+|++++=|++
T Consensus 168 i~l~--hpd~i~S~sfn~dGs~l~TtckDKk 196 (472)
T KOG0303|consen 168 ITLD--HPDMVYSMSFNRDGSLLCTTCKDKK 196 (472)
T ss_pred eecC--CCCeEEEEEeccCCceeeeecccce
Confidence 4444 8899999999999999999998763
No 144
>PRK04922 tolB translocation protein TolB; Provisional
Probab=63.16 E-value=7.5 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=19.7
Q ss_pred CCCCeEEEEEcCCCCeEEEEeccC
Q 045898 25 PSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+.|...+|||+++.|+..++++
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~ 225 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFER 225 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCC
Confidence 356788999999999999888653
No 145
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.14 E-value=19 Score=24.71 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=27.5
Q ss_pred ceEEecCCCCCCeEEEEEcC--CCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSP--KANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp--~~~~La~sSWD~~ 49 (49)
+.+.-...+...|-.+.|.- .|.+||++|.|++
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 44555678999999999995 5899999999984
No 146
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=62.87 E-value=16 Score=26.46 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=28.2
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+.++...+|++.|-.|++||++..+++++=|.+
T Consensus 421 ~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred cceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 3455666789999999999999999999887754
No 147
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=62.67 E-value=8 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=23.1
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+-....|...|-+|.---++. |++||||+|
T Consensus 92 ~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 92 EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred CchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 33445567888888887655555 999999985
No 148
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=62.03 E-value=12 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=25.0
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+.+..--.-+|.++.|.|..++|+++++-.
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred EEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 44555544557999999999999999998753
No 149
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=61.57 E-value=11 Score=26.78 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.-....|.+.|-+++.+|+.++++..|=|++
T Consensus 361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred EEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 3344689999999999999999999998874
No 150
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=61.49 E-value=16 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=22.9
Q ss_pred ceEEecCCCCCCeEEEEEcCCC-CeEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKA-NILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~ 48 (49)
+.+-....|.|.|.+|.|||.- ..||+++=|+
T Consensus 307 ~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 307 KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred cCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 3333446789999999999986 5677666443
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.24 E-value=9.8 Score=26.71 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.0
Q ss_pred ecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 21 VSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+...+.|-|.++.|-+-|+++|++|=|.
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq 35 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQ 35 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCC
Confidence 4566789999999999999999988665
No 152
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=59.66 E-value=8.5 Score=27.03 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEec
Q 045898 24 PPSDSVSSLCFSPKANILVATSW 46 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSW 46 (49)
..+-...+|+|||..+.+|++|=
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSG 120 (361)
T ss_pred EeccceeeEeecCcCceEEeccC
Confidence 56778999999999999999873
No 153
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.40 E-value=11 Score=26.41 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=22.1
Q ss_pred ecCCCCCCeEEEEEcCCC--CeEEEEeccC
Q 045898 21 VSQPPSDSVSSLCFSPKA--NILVATSWDN 48 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~--~~La~sSWD~ 48 (49)
..--|.+.|.+|.|.|.. ..|++++=|+
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCC
Confidence 334579999999999975 4788888775
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=59.30 E-value=22 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.644 Sum_probs=25.6
Q ss_pred eEEecCCCCCCeEEEEEcCCC-----CeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKA-----NILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~-----~~La~sSWD~~ 49 (49)
.|+-+.+|+..|=+|+|+|++ +.++|.-|..+
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 344455689999999999974 69999999864
No 155
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=58.80 E-value=12 Score=27.78 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=26.7
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.-....+++|.|-.|++|+..++|+..|-|+|
T Consensus 388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT 419 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT 419 (577)
T ss_pred hccceeccccceeeeeecccccceeeecCCce
Confidence 34455689999999999999988998888875
No 156
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=58.54 E-value=8 Score=28.31 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEecc
Q 045898 24 PPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.+..+|.+|.||-++++|++|.-|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD 77 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDD 77 (609)
T ss_pred hhccccceeeeccCCeEEeecCCc
Confidence 578999999999999999998755
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=58.50 E-value=14 Score=26.26 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=25.4
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
.....+...+..+|+.|+|.++|+.|-+|+
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccc
Confidence 456777889999999999999998887764
No 158
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.37 E-value=13 Score=26.48 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCeEEEEeccC
Q 045898 27 DSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+||++.-|++|++||+|+=||
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCC
Confidence 5999999999999999999876
No 159
>PRK04792 tolB translocation protein TolB; Provisional
Probab=58.29 E-value=11 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.1
Q ss_pred CCCeEEEEEcCCCCeEEEEecc
Q 045898 26 SDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.+.|...+|||+++.|+..+++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~ 238 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFE 238 (448)
T ss_pred CCcccCceECCCCCEEEEEEec
Confidence 4567889999999999887765
No 160
>PRK13616 lipoprotein LpqB; Provisional
Probab=58.24 E-value=10 Score=27.66 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.8
Q ss_pred CCCeEEEEEcCCCCeEEEE
Q 045898 26 SDSVSSLCFSPKANILVAT 44 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~s 44 (49)
...|++++|||+|+.||.-
T Consensus 447 ~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCcCeEEECCCCCEEEEE
Confidence 3579999999999877764
No 161
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.15 E-value=13 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+.-+|+||++..++..|+++|-|++
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccc
Confidence 348899999999999999999998874
No 162
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=57.95 E-value=12 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.8
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+.+...|=-.|++|+|+-++.+|.++|=|+
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 3444567889999999999999999998776
No 163
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=57.89 E-value=11 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=29.8
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+..++...+...|.+|++-|-..++|.||=|++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~Drt 174 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRT 174 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCce
Confidence 678888999999999999999999999998864
No 164
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=56.10 E-value=12 Score=26.78 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.2
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..-.|.||+|.|.-.|++||+|.=+|
T Consensus 22 vteadiis~vef~~~Ge~LatGdkgG 47 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGERLATGDKGG 47 (433)
T ss_pred echhcceeeEEeecccceEeecCCCC
Confidence 44569999999999999999987654
No 165
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=55.14 E-value=8.9 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.232 Sum_probs=22.6
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
...+-..|.+|+|+|+|+.-++|.=|+
T Consensus 283 vkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 283 VKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred ccccccCcceeEECCCCcccccCCCCc
Confidence 367889999999999999888876554
No 166
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=54.52 E-value=27 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=17.3
Q ss_pred CCCeEEEEEcCCCCeEEEEecc
Q 045898 26 SDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.+....++|+|++++|+|+.-+
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETT
T ss_pred CCCccEEEEeCCCCEEEEEecC
Confidence 4567899999999999988754
No 167
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=54.44 E-value=11 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.7
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
....+=+|..|.||=++++||++|=|
T Consensus 227 isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred eccccCceEEEEeccCcceeeccCcc
Confidence 34556789999999999999999865
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=54.18 E-value=13 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCeEEEEeccC
Q 045898 29 VSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 29 IS~l~Fsp~~~~La~sSWD~ 48 (49)
-.+++|++.|.+||+|+=||
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG 45 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANG 45 (405)
T ss_pred cceEEeccCcceeeeeccCC
Confidence 67899999999999998665
No 169
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=53.76 E-value=3.7 Score=29.30 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.9
Q ss_pred cCCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898 22 SQPPSDSVSSLCFSPKA-NILVATSWDNQ 49 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~-~~La~sSWD~~ 49 (49)
...+.|+|++|+=.|.. ..+++||.||.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~ 90 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGE 90 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCce
Confidence 47899999999999998 78999999973
No 170
>PRK01029 tolB translocation protein TolB; Provisional
Probab=53.61 E-value=22 Score=24.43 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=15.5
Q ss_pred CCeEEEEEcCCCCeEEEEec
Q 045898 27 DSVSSLCFSPKANILVATSW 46 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSW 46 (49)
..+...+|||+++.|+..+.
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred CCcCCeEECCCCCEEEEEEC
Confidence 34578899999998887663
No 171
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=53.28 E-value=20 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=16.8
Q ss_pred CCeEEEEEcCCCCeEEEEeccCC
Q 045898 27 DSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
-.+-.+.|+++|+.+-+|.||+.
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--T
T ss_pred CcEeccEECCCCCEEEEEEecCC
Confidence 34889999999999999999963
No 172
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=52.91 E-value=17 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+-.|++|++-|.|-.|++||.|-
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy 189 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDY 189 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccc
Confidence 3568999999999999999999884
No 173
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.25 E-value=32 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=27.8
Q ss_pred CceEEecCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPK-ANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~-~~~La~sSWD~~ 49 (49)
.+.+...+.+++.|-..+|||. +++++..|=|++
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 4666777889999999999997 588888887763
No 174
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.61 E-value=14 Score=28.41 Aligned_cols=27 Identities=11% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..|+--|.+|+.+|+.+++|.+|-|++
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred HhhcccccceEecCCCceEEecccccc
Confidence 346777999999999999999999975
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.33 E-value=29 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=27.0
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
--+-..+++.|.+|.-.|.|..|+.||=||+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGt 423 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGT 423 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCc
Confidence 3445789999999999999999999998874
No 176
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.30 E-value=19 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeccCC
Q 045898 26 SDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.-.||.++.+|.|+.|+++|.|+.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCe
Confidence 368999999999999999999874
No 177
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.74 E-value=30 Score=25.87 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.3
Q ss_pred CCCeEEEEEcCCCCeEEEE
Q 045898 26 SDSVSSLCFSPKANILVAT 44 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~s 44 (49)
...|-+|+||++.+.|||-
T Consensus 66 ~G~I~SIkFSlDnkilAVQ 84 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQ 84 (657)
T ss_pred CCceeEEEeccCcceEEEE
Confidence 3589999999999999873
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=47.79 E-value=12 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCCCCCeEEEEEcCCC-CeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKA-NILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~-~~La~sSWD~ 48 (49)
..+.+.|.+|+|.|.. ++|+++|=|.
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCc
Confidence 5689999999999985 7888887653
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=46.92 E-value=24 Score=26.85 Aligned_cols=20 Identities=25% Similarity=0.640 Sum_probs=16.6
Q ss_pred CeEEEEEcCCCCeEEEEeccC
Q 045898 28 SVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 28 ~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+.-+.|+|+|.-|++ ||.+
T Consensus 275 ~~t~vtfnpNGtElLv-s~~g 294 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLV-SWGG 294 (758)
T ss_pred eeEEEEECCCCcEEEE-eeCC
Confidence 3677899999998888 7875
No 180
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=46.64 E-value=40 Score=23.62 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=26.4
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.+-...++...|-++.|.|...+|+..+=|++
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 334445678899999999999999988887764
No 181
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=46.46 E-value=46 Score=24.09 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=27.1
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
...+.+...+.+.|.+|... +++|++||-|++
T Consensus 321 ~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 321 GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred cceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence 46777777799999999997 889999998863
No 182
>KOG4328 consensus WD40 protein [Function unknown]
Probab=45.68 E-value=27 Score=25.61 Aligned_cols=26 Identities=42% Similarity=0.557 Sum_probs=21.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
-++.-.|.+..|||.+-.|++.+-|+
T Consensus 366 ~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 366 LPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred ccccceeeeeEEcCCCCceEeeccCC
Confidence 45778999999999976688888775
No 183
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.48 E-value=27 Score=25.36 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=24.7
Q ss_pred CCceEEecCCCCCCeEEEEEcCCC-CeEEEEeccC
Q 045898 15 PNKSIEVSQPPSDSVSSLCFSPKA-NILVATSWDN 48 (49)
Q Consensus 15 ~~~~~~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~ 48 (49)
+.+.+-....|++.||.|+++++- .+|+.+|=|+
T Consensus 362 ~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 362 PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred CCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 335555667899999999999985 5666665443
No 184
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=45.27 E-value=29 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=22.9
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.++-...++|++++|-.|++|..|=.|.-|
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 345557899999999999998777655433
No 185
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=44.33 E-value=6.1 Score=28.44 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+++..+++|-|.+|+| +.+.+++|..||+
T Consensus 393 LRvLeGHEeLvRciRF--d~krIVSGaYDGk 421 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRF--DNKRIVSGAYDGK 421 (499)
T ss_pred HHHHhchHHhhhheee--cCceeeeccccce
Confidence 4455677888888888 6667777777764
No 186
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.23 E-value=28 Score=27.14 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+.|.-.|+.|+|...|..||+||=|+
T Consensus 104 ngHK~AVt~l~fd~~G~rlaSGskDt 129 (888)
T KOG0306|consen 104 NGHKAAVTTLKFDKIGTRLASGSKDT 129 (888)
T ss_pred cccccceEEEEEcccCceEeecCCCc
Confidence 56889999999999999999999876
No 187
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=44.19 E-value=56 Score=23.23 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=27.2
Q ss_pred ceEEecCCCCCCeEEEEEcCC----------------CCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPK----------------ANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~----------------~~~La~sSWD~~ 49 (49)
+.+-|-..|.|+|-.|+|..+ |+.|.|+-||++
T Consensus 304 ~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 304 RKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 456677789999999999973 578999999984
No 188
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=44.19 E-value=22 Score=27.90 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEecc
Q 045898 24 PPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.+.-+|.+|+-||++++||+|-.-
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CcccceEEEEECCCcceecccCcc
Confidence 467899999999999999987543
No 189
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.89 E-value=38 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+|+|-|..|.-+++|+.++++|=|++
T Consensus 210 rGHTdNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 210 RGHTDNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred eccccceEEEEEcCCCCeEeecCCCce
Confidence 389999999999999999998887764
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=42.79 E-value=26 Score=25.77 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=25.7
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
++.+.+...+...+..|+|+|-.++|+++.
T Consensus 347 ~~~~~VLrGHRSv~NQVRF~~H~~~l~SSG 376 (609)
T KOG4227|consen 347 EKELTVLRGHRSVPNQVRFSQHNNLLVSSG 376 (609)
T ss_pred cceeEEEecccccccceeecCCcceEeccc
Confidence 577889999999999999999888777654
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=41.82 E-value=39 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=21.7
Q ss_pred EEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 19 IEVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
.++..|-...|=.|+|||+|..++++.
T Consensus 249 ~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 249 ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred eeecCCCccceEEEEEcCCCceeeccc
Confidence 445667779999999999998888764
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=41.77 E-value=30 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+..+|++|++-|+|+++|++.-|.
T Consensus 291 cH~g~V~siAv~~~G~YMaTtG~Dr 315 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYMATTGLDR 315 (545)
T ss_pred hcCCCcceEEECCCCcEEeeccccc
Confidence 4678999999999999999987664
No 193
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.99 E-value=41 Score=24.94 Aligned_cols=29 Identities=38% Similarity=0.551 Sum_probs=22.9
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
+-+++...-.-.+++|+.+|++++|+++|
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 44555666677899999999999998776
No 194
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=40.24 E-value=35 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=20.2
Q ss_pred EecCCCCCCeEEEEEcCCC-CeEEEEecc
Q 045898 20 EVSQPPSDSVSSLCFSPKA-NILVATSWD 47 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~-~~La~sSWD 47 (49)
..-.-+...|++|.|+|.- ..|++++=|
T Consensus 341 A~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred eeEEeccCCeeEEEeccccCceEEeccCC
Confidence 3445588999999999974 466666544
No 195
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=39.94 E-value=50 Score=21.57 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=12.6
Q ss_pred CCCeEEEEEcCCCCeEEE
Q 045898 26 SDSVSSLCFSPKANILVA 43 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~ 43 (49)
.+-||.|+|.|+.+.|.+
T Consensus 21 ~~e~SGLTy~pd~~tLfa 38 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFA 38 (248)
T ss_dssp -S-EEEEEEETTTTEEEE
T ss_pred cCCccccEEcCCCCeEEE
Confidence 345999999998765543
No 196
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.86 E-value=23 Score=26.56 Aligned_cols=16 Identities=31% Similarity=0.384 Sum_probs=0.0
Q ss_pred EEEEEcCCCCeEEEEe
Q 045898 30 SSLCFSPKANILVATS 45 (49)
Q Consensus 30 S~l~Fsp~~~~La~sS 45 (49)
|.|+|+++|.+|++|+
T Consensus 254 stvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGN 269 (673)
T ss_pred ceeeecCCceEEEeec
No 197
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=39.85 E-value=39 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=22.8
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sS 45 (49)
.+++.+...-.|.|.+.+|.|.++.+++-+
T Consensus 264 e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 264 ERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ccccceeccccccceeeeecccCCceeEEe
Confidence 466666655579999999999998776543
No 198
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=39.80 E-value=36 Score=21.80 Aligned_cols=16 Identities=13% Similarity=0.301 Sum_probs=13.6
Q ss_pred CCeEEEEEcCCCCeEE
Q 045898 27 DSVSSLCFSPKANILV 42 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La 42 (49)
+.|+++.|+++++.++
T Consensus 22 g~V~Dvif~~~gdrvl 37 (176)
T COG3881 22 GAVDDVIFNFSGDRVL 37 (176)
T ss_pred cceeeEEEecCCCeEE
Confidence 8999999999987543
No 199
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.69 E-value=41 Score=25.51 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=18.5
Q ss_pred CCCCe-EEEEEcCCCCeEEEEeccC
Q 045898 25 PSDSV-SSLCFSPKANILVATSWDN 48 (49)
Q Consensus 25 p~D~I-S~l~Fsp~~~~La~sSWD~ 48 (49)
|+.-+ .+++|-|+|++||++==||
T Consensus 60 p~~~v~~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 60 PGENVTASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred CCCccceeeeecCCCCEEEEEecCC
Confidence 56444 5999999999999975444
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=39.60 E-value=41 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=19.3
Q ss_pred CCCCCeEEEEEcCCC-CeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKA-NILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~-~~La~sSWD~ 48 (49)
-....|.+++|+|.. ++||.|+.+|
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~G 265 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNG 265 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCc
Confidence 356889999999975 6777777554
No 201
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=39.13 E-value=37 Score=24.10 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+.|.|-+|-|++.+++++++.-|.
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcc
Confidence 57899999999999999999988774
No 202
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.66 E-value=42 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=20.0
Q ss_pred EecCCCCC-CeEEEEEcCCCCeEEEEecc
Q 045898 20 EVSQPPSD-SVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 20 ~l~~~p~D-~IS~l~Fsp~~~~La~sSWD 47 (49)
.+..+... +|.++.|.|.|..|++++=+
T Consensus 424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 424 VLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred EeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 33444444 89999999999888776543
No 203
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.28 E-value=68 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=23.7
Q ss_pred ceEEecC-CCCCCeEEEEEcCCCCeEEEEecc
Q 045898 17 KSIEVSQ-PPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 17 ~~~~l~~-~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
.++.+.. +....|..|+|++++.+||+--.|
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 5566765 444789999999999999985433
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=36.48 E-value=49 Score=23.25 Aligned_cols=28 Identities=4% Similarity=0.215 Sum_probs=23.2
Q ss_pred ecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 21 VSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+.+.|...|++++..-+|.+||++|=-|
T Consensus 176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 176 IINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred EEEcccCceeEEEEcCCccEEEEeccCc
Confidence 3457889999999999999999988433
No 205
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=36.10 E-value=40 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.0
Q ss_pred CCCeEEEEEcCCC------CeEEEEeccC
Q 045898 26 SDSVSSLCFSPKA------NILVATSWDN 48 (49)
Q Consensus 26 ~D~IS~l~Fsp~~------~~La~sSWD~ 48 (49)
.--|+||-|+|.+ ++|++|.|+.
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~ 558 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSD 558 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecc
Confidence 3679999999863 4999999986
No 206
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=35.09 E-value=47 Score=14.63 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=7.8
Q ss_pred CCCCeEEEEecc
Q 045898 36 PKANILVATSWD 47 (49)
Q Consensus 36 p~~~~La~sSWD 47 (49)
|+++.|.++.|+
T Consensus 1 pd~~~lyv~~~~ 12 (42)
T TIGR02276 1 PDGTKLYVTNSG 12 (42)
T ss_pred CCCCEEEEEeCC
Confidence 456667776664
No 207
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=34.93 E-value=34 Score=22.55 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=14.7
Q ss_pred eEEEEEcCCCCeEEEEeccC
Q 045898 29 VSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 29 IS~l~Fsp~~~~La~sSWD~ 48 (49)
=..+.|||+++.||.-..|.
T Consensus 103 ~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-
T ss_pred ccceEECCCCCEEEEEEECC
Confidence 36799999999998876653
No 208
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.57 E-value=50 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=25.3
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+..++...|..+.-.|++++|+++|=|++
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~ 326 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGT 326 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCce
Confidence 355678888999999999999999987763
No 209
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=34.52 E-value=69 Score=22.08 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=18.6
Q ss_pred CCCeEEEEEcCCCC-eEEEEecc
Q 045898 26 SDSVSSLCFSPKAN-ILVATSWD 47 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~-~La~sSWD 47 (49)
...+..|+|+|+++ +|.+.++.
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCCC
Confidence 46788999999999 99888874
No 210
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=33.70 E-value=66 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=19.5
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEE
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVA 43 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~ 43 (49)
.+.++..+++-.|..|+|++.++++-+
T Consensus 60 ~~~vi~g~~drsIE~L~W~e~~RLFS~ 86 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAEGGRLFSS 86 (691)
T ss_pred eeEEEecCCCCceeeEEEccCCeEEee
Confidence 334455677899999999977776543
No 211
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.46 E-value=36 Score=23.60 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=14.6
Q ss_pred CCCeEEEEEcCCCCeEEE
Q 045898 26 SDSVSSLCFSPKANILVA 43 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~ 43 (49)
+.-||+|.|+|+.+.|-+
T Consensus 85 ~~nvS~LTynp~~rtLFa 102 (316)
T COG3204 85 TANVSSLTYNPDTRTLFA 102 (316)
T ss_pred cccccceeeCCCcceEEE
Confidence 456999999999987644
No 212
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=33.11 E-value=72 Score=26.03 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=22.4
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEE
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVAT 44 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~s 44 (49)
...|+-..-.++|++.+|||+++.|+.-
T Consensus 100 ~~~eivg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 100 LELEIVGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceeeeeeccCceEEEeecCCCcEEEEE
Confidence 5567777778999999999998766543
No 213
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=33.08 E-value=42 Score=25.08 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.+-|+|++|++-|++-+|+.++=|+
T Consensus 529 a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred eccceecceeecCCCceEEeecCCc
Confidence 4669999999999999999998776
No 214
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=32.90 E-value=56 Score=24.93 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeccC
Q 045898 26 SDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 26 ~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
-++|+.|.-||.|++|||.+-++
T Consensus 475 ~~~I~~l~~SsdG~yiaa~~t~g 497 (691)
T KOG2048|consen 475 CPSISRLVVSSDGNYIAAISTRG 497 (691)
T ss_pred CCcceeEEEcCCCCEEEEEeccc
Confidence 38999999999999999987543
No 215
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=32.39 E-value=48 Score=25.44 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=16.3
Q ss_pred CCCCeEEEEEcCCCCeEEEE
Q 045898 25 PSDSVSSLCFSPKANILVAT 44 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~~La~s 44 (49)
+.+.|++|+|++++..|-+|
T Consensus 123 ~~~rVTal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSG 142 (726)
T ss_pred CCceEEEEEecccccEEeec
Confidence 56889999999998766554
No 216
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=32.19 E-value=1.2e+02 Score=18.46 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=18.4
Q ss_pred ceEEecCCCCCCeEEEEEc-CCCCeEEEEe
Q 045898 17 KSIEVSQPPSDSVSSLCFS-PKANILVATS 45 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fs-p~~~~La~sS 45 (49)
+.+....-|...+++++|. |+.+.|-+++
T Consensus 215 ~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 215 KLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 3344444556799999995 6667665543
No 217
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=32.13 E-value=87 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=20.5
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEE
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVA 43 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~ 43 (49)
...++-+-+..|.+++|+|+++-++|
T Consensus 262 s~~V~L~k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 262 SVSVPLLKEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred eEEEecCCCCCceEEEECCCCCEEEE
Confidence 44555556899999999999987765
No 218
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=31.52 E-value=58 Score=28.11 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
.|.+ |-.++|||+|.++|+.+|+.
T Consensus 168 ~~~~-v~~~~~SpDG~f~at~g~~d 191 (2439)
T KOG1064|consen 168 TPSP-VYSSTISPDGEFFATIGKRD 191 (2439)
T ss_pred CCcc-eeEEEEcCCcceEEeccccC
Confidence 3444 88999999999999999975
No 219
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=30.70 E-value=69 Score=21.19 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.6
Q ss_pred CeEEEEEcCCCCeEEEE
Q 045898 28 SVSSLCFSPKANILVAT 44 (49)
Q Consensus 28 ~IS~l~Fsp~~~~La~s 44 (49)
.+..+++||++++||.+
T Consensus 125 ~~~~~~~Spdg~~la~~ 141 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYS 141 (414)
T ss_dssp EEEEEEETTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEE
Confidence 44568999999988875
No 220
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=30.51 E-value=49 Score=22.18 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=10.1
Q ss_pred EEEEcCCCCeEEE
Q 045898 31 SLCFSPKANILVA 43 (49)
Q Consensus 31 ~l~Fsp~~~~La~ 43 (49)
.|+|||+++.|-+
T Consensus 167 Gla~SpDg~tly~ 179 (307)
T COG3386 167 GLAFSPDGKTLYV 179 (307)
T ss_pred ceEECCCCCEEEE
Confidence 5999999976544
No 221
>PF13363 BetaGal_dom3: Beta-galactosidase, domain 3; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=29.94 E-value=72 Score=17.69 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=14.7
Q ss_pred CCCceEEecCCCCCCeEEEEEcCCCCeE
Q 045898 14 NPNKSIEVSQPPSDSVSSLCFSPKANIL 41 (49)
Q Consensus 14 ~~~~~~~l~~~p~D~IS~l~Fsp~~~~L 41 (49)
+....+|+..+|. .|+.|.| +|+.|
T Consensus 43 n~tT~lEV~~~p~-~v~~l~w--NG~~v 67 (79)
T PF13363_consen 43 NATTTLEVIGPPK-SVSSLTW--NGKPV 67 (79)
T ss_dssp SS-EEEEEES--T-T--EEEE--TTEEE
T ss_pred CCCeeEEEEeCCC-CccEEEE--CCEEc
Confidence 4457899998866 9999999 55433
No 222
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=29.81 E-value=65 Score=17.91 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=13.2
Q ss_pred eEEEEEcCCCCeEEEEe
Q 045898 29 VSSLCFSPKANILVATS 45 (49)
Q Consensus 29 IS~l~Fsp~~~~La~sS 45 (49)
-..|.++|++++|-+++
T Consensus 56 aNGI~~s~~~k~lyVa~ 72 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVAS 72 (86)
T ss_pred CceEEEcCCCCEEEEEe
Confidence 34688999999887765
No 223
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=29.59 E-value=82 Score=21.66 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCeEEEEEcCCCCeEEEE
Q 045898 27 DSVSSLCFSPKANILVAT 44 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~s 44 (49)
..|..++.||++++||.=
T Consensus 217 ~~i~~iavSpng~~iAl~ 234 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALF 234 (410)
T ss_pred CCeEEEEECCCCCEEEEE
Confidence 569999999999887753
No 224
>PRK04043 tolB translocation protein TolB; Provisional
Probab=29.56 E-value=1.4e+02 Score=20.60 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=15.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEe
Q 045898 25 PSDSVSSLCFSPKANILVATS 45 (49)
Q Consensus 25 p~D~IS~l~Fsp~~~~La~sS 45 (49)
....+....|||+++.|+...
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEE
Confidence 445567788999998777654
No 225
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=29.10 E-value=61 Score=28.00 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 23 QPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 23 ~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
..+..++++|+|.|+.++|++|+-+|
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcC
Confidence 67889999999999999999998765
No 226
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=28.46 E-value=1.4e+02 Score=21.62 Aligned_cols=33 Identities=24% Similarity=0.126 Sum_probs=25.8
Q ss_pred ceEEe-cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEV-SQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l-~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
..+.. ...+.++|.+|+|..-++.|+.+|=|++
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCc
Confidence 33444 5679999999999886789999996653
No 227
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.35 E-value=76 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=16.3
Q ss_pred CCeEEEEEcCCCCeEEEEe
Q 045898 27 DSVSSLCFSPKANILVATS 45 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La~sS 45 (49)
.=|-+|+|++++++++++|
T Consensus 217 ~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred CceEEEEEeCCCCEEEEEC
Confidence 4489999999999888876
No 228
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.31 E-value=1.1e+02 Score=21.13 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=27.3
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
+.++-...+...|..|+|--.+..++++|.|.+
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s 124 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS 124 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccce
Confidence 445555788899999999999999999998863
No 229
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=27.11 E-value=51 Score=19.76 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=11.2
Q ss_pred eEEEEEcCCCCeEEE
Q 045898 29 VSSLCFSPKANILVA 43 (49)
Q Consensus 29 IS~l~Fsp~~~~La~ 43 (49)
..+|+||.++++.++
T Consensus 7 ~~~l~WS~Dg~laV~ 21 (173)
T PF12657_consen 7 PNALAWSEDGQLAVA 21 (173)
T ss_pred CcCeeECCCCCEEEE
Confidence 357999999975554
No 230
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.85 E-value=99 Score=23.91 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=25.9
Q ss_pred ceEEecCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
..+..-..|.|=|.+|+-.|+..+++++|-|
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDD 118 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDD 118 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCc
Confidence 4455557899999999999999999998855
No 231
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=26.70 E-value=1.3e+02 Score=20.80 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=26.3
Q ss_pred eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
.+.-...|+--|.+|.|--+++.+..||=|++
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 44444568889999999999999999998874
No 232
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=25.83 E-value=65 Score=23.01 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=20.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
++-.-|.+|+|||++++++.+--|.
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDE 173 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDE 173 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCc
Confidence 4557789999999999998876553
No 233
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=24.52 E-value=29 Score=27.55 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=16.4
Q ss_pred EEecCCCCCCeEEEEEcCCC
Q 045898 19 IEVSQPPSDSVSSLCFSPKA 38 (49)
Q Consensus 19 ~~l~~~p~D~IS~l~Fsp~~ 38 (49)
+.|...++..|++|+|||-.
T Consensus 267 vsvLrghtgavtaiafsP~~ 286 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA 286 (1113)
T ss_pred HHHHhccccceeeeccCccc
Confidence 44567899999999999953
No 234
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.37 E-value=79 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.1
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898 22 SQPPSDSVSSLCFSPKANILVATSWD 47 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~sSWD 47 (49)
...+.-.|..|+|+|+|++++.+.=|
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCc
Confidence 34577889999999999999887644
No 235
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=24.22 E-value=89 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=17.9
Q ss_pred cCCCCCCeEEEEEcCCCCeEEEE
Q 045898 22 SQPPSDSVSSLCFSPKANILVAT 44 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~~~La~s 44 (49)
..|+..-|..++|||+++.|-++
T Consensus 549 t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 549 TGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred cCCCcceeecceeCCCCceEEEE
Confidence 35566899999999999876553
No 236
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=23.59 E-value=92 Score=22.83 Aligned_cols=29 Identities=31% Similarity=0.289 Sum_probs=24.0
Q ss_pred ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898 21 VSQPPSDSVSSLCFSPKANILVATSWDNQ 49 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~ 49 (49)
....+.|.|++|+|--..+.|.++|-|.+
T Consensus 239 ~~~ghr~~V~~L~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGTSELYSASADRS 267 (479)
T ss_pred cccccccceeeeeeecCccceeeeecCCc
Confidence 34678899999999998888888887753
No 237
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=22.94 E-value=1.6e+02 Score=23.72 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCCCceEEecCCCCCCeEEEEEcCCCCeEEEEec
Q 045898 13 QNPNKSIEVSQPPSDSVSSLCFSPKANILVATSW 46 (49)
Q Consensus 13 ~~~~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSW 46 (49)
.||.-.+...+|-...|+++.+|++++.||.+-=
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 3454445555566677999999999999998743
No 238
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=22.47 E-value=1.9e+02 Score=19.08 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=19.3
Q ss_pred ecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 21 VSQPPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+.......|.+|++.|+|.++++..=++
T Consensus 300 ~~~~~~~r~~~v~~~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 300 FLGGFGGRPRDVAQGPDGALYVSDDSDG 327 (331)
T ss_dssp ECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred ccccCCCCceEEEEcCCCeEEEEECCCC
Confidence 3344455899999999999888876443
No 239
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.44 E-value=1.3e+02 Score=16.78 Aligned_cols=15 Identities=13% Similarity=0.492 Sum_probs=10.5
Q ss_pred EEEEEcCCCCeEEEE
Q 045898 30 SSLCFSPKANILVAT 44 (49)
Q Consensus 30 S~l~Fsp~~~~La~s 44 (49)
..|+.||++++|+++
T Consensus 60 NGVals~d~~~vlv~ 74 (89)
T PF03088_consen 60 NGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEE-TTSSEEEEE
T ss_pred CeEEEcCCCCEEEEE
Confidence 458899999877664
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=22.25 E-value=1.1e+02 Score=22.91 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=19.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
-|...=.++-|+|.|++|+.+..++
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCC
Confidence 3455556789999999998887664
No 241
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.23 E-value=56 Score=25.44 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=27.0
Q ss_pred ceEEecCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPK-ANILVATSWDNQ 49 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~-~~~La~sSWD~~ 49 (49)
+.+.+.+-++-+|.+|.|++. .++|++||=|++
T Consensus 124 k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~ 157 (839)
T KOG0269|consen 124 KLLTVFNEHERSANKLDFHSTEPNILISGSQDGT 157 (839)
T ss_pred hhhhHhhhhccceeeeeeccCCccEEEecCCCce
Confidence 445566789999999999997 589999998863
No 242
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=22.17 E-value=62 Score=19.19 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=12.5
Q ss_pred CCeEEEEEcCCCCeEE
Q 045898 27 DSVSSLCFSPKANILV 42 (49)
Q Consensus 27 D~IS~l~Fsp~~~~La 42 (49)
..+-+=.|||+|+++.
T Consensus 13 Gv~AAGefs~DGkLv~ 28 (109)
T COG4831 13 GVMAAGEFSPDGKLVE 28 (109)
T ss_pred ceeEeceeCCCCceEE
Confidence 4566678999999875
No 243
>PF14302 DUF4377: Domain of unknown function (DUF4377)
Probab=22.02 E-value=72 Score=17.31 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=11.6
Q ss_pred ceEEecCCCCCCeEEEEE
Q 045898 17 KSIEVSQPPSDSVSSLCF 34 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~F 34 (49)
+.+.+.+||.|+ ++++|
T Consensus 55 k~~~~~nppaD~-ss~~Y 71 (80)
T PF14302_consen 55 KRTPVANPPADA-SSYRY 71 (80)
T ss_pred EEEECCCCCCCC-CceeE
Confidence 456677888888 44555
No 244
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=21.72 E-value=1.5e+02 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=23.6
Q ss_pred CceEEecCCCCCCeEEEEEcCCCCeEEEE
Q 045898 16 NKSIEVSQPPSDSVSSLCFSPKANILVAT 44 (49)
Q Consensus 16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~s 44 (49)
.....+..++.-.|.-|.|||+|..|..+
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~ 119 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHDGTVLMTL 119 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCCCCeEEEc
Confidence 35567778888999999999999877653
No 245
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=34 Score=24.83 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=23.7
Q ss_pred ceEEecCCCCCCeEEEEEcCCCC-eEEEEeccC
Q 045898 17 KSIEVSQPPSDSVSSLCFSPKAN-ILVATSWDN 48 (49)
Q Consensus 17 ~~~~l~~~p~D~IS~l~Fsp~~~-~La~sSWD~ 48 (49)
+.+++....+--|.+|+|||..+ +|..+|-++
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~n 216 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGN 216 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCc
Confidence 44566777788999999999876 666666554
No 246
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=21.38 E-value=1.4e+02 Score=21.59 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.0
Q ss_pred CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898 24 PPSDSVSSLCFSPKANILVATSWDN 48 (49)
Q Consensus 24 ~p~D~IS~l~Fsp~~~~La~sSWD~ 48 (49)
+-+-.|.+++|.+++..|+.+|.+.
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecccCc
Confidence 3348899999999999999988764
No 247
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=21.38 E-value=1.3e+02 Score=21.31 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=20.0
Q ss_pred cCCCCCCeEEEEEcCCC-CeEEEEecc
Q 045898 22 SQPPSDSVSSLCFSPKA-NILVATSWD 47 (49)
Q Consensus 22 ~~~p~D~IS~l~Fsp~~-~~La~sSWD 47 (49)
...+...|..|+|.|.+ ..|+++.-|
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCc
Confidence 46688999999999986 566665544
No 248
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=21.03 E-value=1.5e+02 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=15.9
Q ss_pred EecCCCCCCeEEEEEcCCCCeEEEEec
Q 045898 20 EVSQPPSDSVSSLCFSPKANILVATSW 46 (49)
Q Consensus 20 ~l~~~p~D~IS~l~Fsp~~~~La~sSW 46 (49)
.+.......|..+.-+++++++++++-
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECc
Confidence 334556688999999999999998764
No 249
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=20.88 E-value=66 Score=14.96 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=7.2
Q ss_pred EEEcCC-CCeEEE
Q 045898 32 LCFSPK-ANILVA 43 (49)
Q Consensus 32 l~Fsp~-~~~La~ 43 (49)
++|.|. +++|..
T Consensus 1 m~FCp~C~nlL~p 13 (35)
T PF02150_consen 1 MRFCPECGNLLYP 13 (35)
T ss_dssp --BETTTTSBEEE
T ss_pred CeeCCCCCccceE
Confidence 578887 677765
Done!