BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045900
         (155 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B1H222|GORAB_RAT RAB6-interacting golgin OS=Rattus norvegicus GN=Gorab PE=2 SV=2
          Length = 368

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 34  EEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRE 93
           EE+ +RKK  + + +  +  R + E+ +L +I +EL+ L D +  ++ ++R +ID A+ E
Sbjct: 157 EEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLE 216

Query: 94  LKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEELSKSIE 152
                +   + E EY  A      K++ K QL   L  ++ ++E  + +KLEEL + ++
Sbjct: 217 YSYARKRFDRAEAEYVTAKLDLQRKTETKEQLTEHLCTIIQQNELRKAQKLEELMRQLD 275


>sp|Q5T7V8|GORAB_HUMAN RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1
          Length = 394

 Score = 40.0 bits (92), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 34  EEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRE 93
           EE+ +RKK  + + +  +  R + E+ +L +I +EL+ L D +  ++ ++R +ID A+ +
Sbjct: 182 EEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLD 241

Query: 94  LKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEELSKSIE 152
                +   + E EY  A      K++ K QL   L  ++ ++E  + KKLEEL + ++
Sbjct: 242 YSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 300


>sp|Q8BRM2|GORAB_MOUSE RAB6-interacting golgin OS=Mus musculus GN=Gorab PE=1 SV=1
          Length = 368

 Score = 40.0 bits (92), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 34  EEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRE 93
           EE+ +RKK  + + +  +  + + E+ +L +I +EL+ L D +  ++ ++R +ID A+ E
Sbjct: 157 EEKNKRKKALLAQAIAERSKKTQAETIKLKRIQKELQALDDMVSADIGILRNRIDQASLE 216

Query: 94  LKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEELSKSIE 152
                +   + E EY  A      K++ K QL   L  ++ ++E  + KKLEEL + ++
Sbjct: 217 YSYARKRFDRAEAEYITAKLDLQRKTETKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 275


>sp|A5PKK7|GORAB_BOVIN RAB6-interacting golgin OS=Bos taurus GN=GORAB PE=2 SV=2
          Length = 370

 Score = 40.0 bits (92), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 34  EEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRE 93
           EE+ +RKK  + + +  +  R + E+ +L +I +EL+ L D +  ++ ++R +ID A+ +
Sbjct: 154 EEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLD 213

Query: 94  LKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEELSKSIE 152
                +   + E EY  A      K++ K QL   L  ++ ++E  + KKLEEL + ++
Sbjct: 214 YSYARKRFDRAEAEYVTAKLELQRKTELKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 272


>sp|O64584|WAP_ARATH WPP domain-associated protein OS=Arabidopsis thaliana GN=WAP PE=1
           SV=2
          Length = 825

 Score = 29.6 bits (65), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 54  RAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALE 113
           R +EE  RL  + +E E L       +A  RKKI++ ++++  L   ++++E E ++ +E
Sbjct: 575 RLKEEIHRLGCLVKEKENLVQTAENNLATERKKIEVVSQQINDLQSQVERQETEIQDKIE 634

Query: 114 AFN 116
           A +
Sbjct: 635 ALS 637


>sp|Q7T320|GORAB_DANRE RAB6-interacting golgin OS=Danio rerio GN=gorab PE=2 SV=1
          Length = 336

 Score = 29.6 bits (65), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 1   MRNLGSSNGSGLSTDEIEDEEMARMAIATFQAR--EEEIERKKTEVKERVELQLGRAEEE 58
           ++++  ++   L   E+E  E  R+    ++ R  EE+ +++K  + + +  +  + + E
Sbjct: 112 VQSIPPADFKELDKQEVELREKNRLQQLQWEQRIMEEKNKKRKALLTKTIAEKSKQTQAE 171

Query: 59  SRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEK 118
           + +L +I  EL+VL D +  ++ V+RK I+ ++ +     +  +K E EY  A    + K
Sbjct: 172 AIKLKKIQRELQVLDDSVSSDIGVLRKLIEQSSMDYSLAWKRFEKAEAEYVAAKMDLHRK 231

Query: 119 SKEKAQLVTALMELLTESE 137
           ++ K QL   L  ++ ++E
Sbjct: 232 TEVKEQLTEHLCAIIQQNE 250


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.124    0.306 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,152,040
Number of Sequences: 539616
Number of extensions: 1910823
Number of successful extensions: 21956
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 1835
Number of HSP's that attempted gapping in prelim test: 16670
Number of HSP's gapped (non-prelim): 5851
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)