Query 045900
Match_columns 155
No_of_seqs 33 out of 35
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 06:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04949 Transcrip_act: Transc 100.0 4.9E-75 1.1E-79 461.1 18.6 150 4-153 10-159 (159)
2 TIGR01837 PHA_granule_1 poly(h 94.9 0.11 2.3E-06 38.9 6.3 62 35-98 55-116 (118)
3 PF05597 Phasin: Poly(hydroxya 94.5 0.2 4.3E-06 38.9 7.1 62 35-98 68-129 (132)
4 TIGR02169 SMC_prok_A chromosom 92.8 7 0.00015 36.1 14.9 72 79-150 952-1023(1164)
5 PF10805 DUF2730: Protein of u 88.3 1.8 4E-05 31.7 5.8 55 45-101 34-88 (106)
6 PF07200 Mod_r: Modifier of ru 87.0 9.8 0.00021 28.2 9.1 62 77-139 54-115 (150)
7 TIGR03185 DNA_S_dndD DNA sulfu 83.9 35 0.00075 31.3 14.7 32 121-152 480-512 (650)
8 PF08317 Spc7: Spc7 kinetochor 82.2 30 0.00065 29.3 12.1 88 43-133 177-264 (325)
9 TIGR00606 rad50 rad50. This fa 80.6 65 0.0014 32.2 14.6 53 77-129 894-946 (1311)
10 cd07623 BAR_SNX1_2 The Bin/Amp 79.7 30 0.00065 27.8 10.1 70 46-115 149-219 (224)
11 PRK03947 prefoldin subunit alp 77.6 26 0.00056 25.8 8.6 29 46-74 23-51 (140)
12 PF10174 Cast: RIM-binding pro 74.9 90 0.0019 30.7 15.9 117 24-147 321-470 (775)
13 PF10186 Atg14: UV radiation r 74.8 39 0.00084 26.5 15.9 51 47-101 57-107 (302)
14 TIGR00606 rad50 rad50. This fa 74.3 1E+02 0.0022 31.0 15.6 104 27-134 859-965 (1311)
15 PF01920 Prefoldin_2: Prefoldi 73.4 26 0.00056 23.8 8.3 71 46-116 15-100 (106)
16 PF07888 CALCOCO1: Calcium bin 72.4 79 0.0017 30.2 11.8 35 106-140 223-257 (546)
17 PF12325 TMF_TATA_bd: TATA ele 71.3 44 0.00096 25.6 10.0 58 74-131 47-107 (120)
18 KOG0250 DNA repair protein RAD 69.6 1.3E+02 0.0027 31.3 13.1 55 39-93 295-352 (1074)
19 KOG0979 Structural maintenance 68.8 60 0.0013 33.5 10.7 93 45-152 257-349 (1072)
20 PF01706 FliG_C: FliG C-termin 68.6 11 0.00024 27.0 4.3 46 44-94 56-101 (110)
21 TIGR00763 lon ATP-dependent pr 67.7 40 0.00086 31.9 8.8 62 29-91 196-260 (775)
22 cd07627 BAR_Vps5p The Bin/Amph 66.9 63 0.0014 25.7 10.4 39 45-83 142-180 (216)
23 PRK10787 DNA-binding ATP-depen 65.0 17 0.00037 34.9 6.0 62 29-91 198-262 (784)
24 PF05278 PEARLI-4: Arabidopsis 63.8 78 0.0017 27.7 9.3 85 48-139 154-247 (269)
25 PF10241 KxDL: Uncharacterized 62.8 53 0.0011 23.4 8.0 60 24-94 21-80 (88)
26 KOG0996 Structural maintenance 62.5 1.5E+02 0.0033 31.3 12.2 93 46-139 910-1009(1293)
27 KOG0239 Kinesin (KAR3 subfamil 61.4 1.6E+02 0.0034 28.4 12.6 88 46-133 199-296 (670)
28 PRK03918 chromosome segregatio 61.2 1.4E+02 0.003 27.6 14.8 63 68-131 297-359 (880)
29 PF11414 Suppressor_APC: Adeno 58.6 15 0.00033 26.7 3.5 55 44-98 29-83 (84)
30 cd07664 BAR_SNX2 The Bin/Amphi 57.3 1.1E+02 0.0024 25.4 9.8 70 27-96 132-210 (234)
31 PRK03918 chromosome segregatio 55.0 1.8E+02 0.0038 27.0 14.7 78 48-129 174-254 (880)
32 PF03332 PMM: Eukaryotic phosp 51.6 17 0.00037 30.8 3.2 38 94-134 103-140 (220)
33 COG1340 Uncharacterized archae 51.4 1.8E+02 0.0038 25.9 10.5 59 74-132 30-88 (294)
34 PF00769 ERM: Ezrin/radixin/mo 51.1 1.1E+02 0.0024 25.4 7.8 77 32-108 16-105 (246)
35 smart00766 DnaG_DnaB_bind DNA 50.8 49 0.0011 21.5 4.7 42 102-143 79-123 (125)
36 TIGR02168 SMC_prok_B chromosom 50.8 2.1E+02 0.0045 26.5 13.8 48 106-153 993-1043(1179)
37 smart00787 Spc7 Spc7 kinetocho 50.7 1.7E+02 0.0037 25.5 11.1 90 46-138 175-264 (312)
38 PF15035 Rootletin: Ciliary ro 47.0 1.4E+02 0.003 24.1 7.6 67 48-118 62-135 (182)
39 cd07653 F-BAR_CIP4-like The F- 46.9 1.4E+02 0.0031 23.5 14.3 51 96-146 172-223 (251)
40 TIGR01834 PHA_synth_III_E poly 45.7 19 0.0004 32.0 2.6 36 68-103 279-314 (320)
41 cd07625 BAR_Vps17p The Bin/Amp 45.5 96 0.0021 26.0 6.7 62 23-84 131-195 (230)
42 PF10498 IFT57: Intra-flagella 44.9 2.3E+02 0.0049 25.3 11.2 73 63-135 237-309 (359)
43 PF10146 zf-C4H2: Zinc finger- 43.9 1.9E+02 0.0042 24.2 10.0 72 26-101 2-76 (230)
44 PRK02224 chromosome segregatio 43.1 2.8E+02 0.0062 25.9 14.9 34 75-108 650-683 (880)
45 cd01279 HTH_HspR-like Helix-Tu 42.5 28 0.00061 24.7 2.7 32 48-79 67-98 (98)
46 COG0466 Lon ATP-dependent Lon 42.0 1.2E+02 0.0025 30.5 7.6 56 33-89 203-261 (782)
47 PF05529 Bap31: B-cell recepto 41.8 1.2E+02 0.0026 23.5 6.3 40 69-108 152-191 (192)
48 PF09278 MerR-DNA-bind: MerR, 40.8 74 0.0016 20.1 4.2 31 42-72 35-65 (65)
49 cd07665 BAR_SNX1 The Bin/Amphi 40.7 2.2E+02 0.0048 23.9 9.7 38 46-83 159-196 (234)
50 PF09712 PHA_synth_III_E: Poly 39.9 21 0.00046 30.4 2.1 31 68-98 262-292 (293)
51 KOG3650 Predicted coiled-coil 39.6 31 0.00068 27.3 2.8 37 110-154 46-82 (120)
52 KOG4074 Leucine zipper nuclear 39.5 1.3E+02 0.0027 27.9 6.9 69 61-142 138-213 (383)
53 COG1196 Smc Chromosome segrega 39.1 4.1E+02 0.0088 26.5 15.0 63 82-144 946-1011(1163)
54 PRK01156 chromosome segregatio 38.5 3.5E+02 0.0075 25.6 13.8 43 51-97 620-662 (895)
55 PHA02562 46 endonuclease subun 38.0 2.7E+02 0.0059 24.2 12.1 71 54-128 331-401 (562)
56 PF10186 Atg14: UV radiation r 37.7 2E+02 0.0043 22.5 12.3 26 77-102 76-101 (302)
57 PF15346 ARGLU: Arginine and g 37.2 1.1E+02 0.0024 24.7 5.6 44 24-67 61-104 (149)
58 cd00584 Prefoldin_alpha Prefol 36.5 1.6E+02 0.0035 21.2 8.3 29 46-74 16-44 (129)
59 TIGR00207 fliG flagellar motor 36.5 89 0.0019 27.0 5.3 47 43-94 274-320 (338)
60 PF14379 Myb_CC_LHEQLE: MYB-CC 35.3 84 0.0018 21.5 4.0 30 39-68 9-45 (51)
61 PF09325 Vps5: Vps5 C terminal 34.9 2.1E+02 0.0045 21.9 9.8 26 85-110 163-188 (236)
62 PRK05686 fliG flagellar motor 34.6 96 0.0021 26.5 5.2 47 43-94 277-323 (339)
63 TIGR00634 recN DNA repair prot 34.5 3.6E+02 0.0077 24.5 9.0 27 46-72 287-313 (563)
64 COG1605 PheA Chorismate mutase 34.1 34 0.00073 24.7 2.1 38 74-111 4-44 (101)
65 PRK11637 AmiB activator; Provi 34.1 3.2E+02 0.0069 23.8 12.1 36 76-111 94-129 (428)
66 TIGR01795 CM_mono_cladeE monof 33.3 29 0.00063 25.1 1.6 20 78-97 3-22 (94)
67 PRK01156 chromosome segregatio 33.1 4.3E+02 0.0092 25.0 15.3 21 79-99 364-384 (895)
68 TIGR00293 prefoldin, archaeal 32.8 1.9E+02 0.004 20.8 6.0 28 46-73 16-43 (126)
69 COG3352 FlaC Putative archaeal 32.8 2.9E+02 0.0062 22.9 8.5 83 41-127 49-136 (157)
70 KOG3915 Transcription regulato 32.7 3.4E+02 0.0074 26.6 8.9 79 19-124 508-590 (641)
71 PRK02224 chromosome segregatio 32.4 4.2E+02 0.0092 24.8 14.1 24 32-55 321-344 (880)
72 PF05667 DUF812: Protein of un 32.2 3.9E+02 0.0084 25.5 9.1 86 55-140 403-504 (594)
73 PRK10203 hypothetical protein; 31.4 1.3E+02 0.0028 23.4 5.0 52 60-112 64-115 (122)
74 PF07956 DUF1690: Protein of U 31.0 2.6E+02 0.0056 21.9 8.1 74 43-117 35-125 (142)
75 PRK07248 hypothetical protein; 30.5 29 0.00063 24.0 1.2 32 80-111 3-37 (87)
76 PRK06285 chorismate mutase; Pr 30.0 34 0.00074 24.4 1.5 21 77-97 6-26 (96)
77 smart00502 BBC B-Box C-termina 29.9 1.8E+02 0.0038 19.6 9.0 38 95-132 64-101 (127)
78 COG4942 Membrane-bound metallo 29.9 4.6E+02 0.01 24.4 10.2 34 78-111 66-99 (420)
79 PF00456 Transketolase_N: Tran 29.8 1.6E+02 0.0036 25.6 5.9 55 76-130 263-327 (332)
80 COG1579 Zn-ribbon protein, pos 29.7 3.6E+02 0.0078 23.1 14.2 101 26-131 11-114 (239)
81 PHA02109 hypothetical protein 29.3 1.3E+02 0.0029 25.9 5.2 54 58-112 169-227 (233)
82 KOG0964 Structural maintenance 29.0 5.3E+02 0.011 27.3 9.9 66 60-129 678-743 (1200)
83 PF10226 DUF2216: Uncharacteri 28.8 3E+02 0.0065 23.4 7.1 20 32-51 17-36 (195)
84 PF08614 ATG16: Autophagy prot 28.5 2.9E+02 0.0063 21.6 8.3 50 78-134 137-186 (194)
85 PF04645 DUF603: Protein of un 28.1 1E+02 0.0022 26.0 4.1 21 76-96 110-130 (181)
86 PF04156 IncA: IncA protein; 28.1 2.7E+02 0.0058 21.1 11.0 43 79-121 124-166 (191)
87 PF02996 Prefoldin: Prefoldin 27.8 99 0.0021 21.6 3.5 28 47-74 7-34 (120)
88 COG2096 cob(I)alamin adenosylt 26.6 2.7E+02 0.0058 23.2 6.3 57 77-134 87-161 (184)
89 TIGR01805 CM_mono_grmpos monof 26.5 29 0.00062 23.8 0.6 31 81-111 2-35 (81)
90 TIGR01807 CM_P2 chorismate mut 26.1 33 0.00072 23.2 0.9 31 81-111 2-35 (76)
91 PRK07194 fliG flagellar motor 25.8 1.7E+02 0.0036 25.3 5.2 46 43-94 271-317 (334)
92 TIGR01799 CM_T chorismate muta 25.8 30 0.00065 23.9 0.6 44 81-124 2-49 (83)
93 TIGR01803 CM-like chorismate m 25.5 41 0.00089 23.2 1.2 17 81-97 2-18 (82)
94 PF05700 BCAS2: Breast carcino 25.4 3.7E+02 0.0079 21.8 8.6 103 19-140 98-202 (221)
95 KOG3800 Predicted E3 ubiquitin 25.4 1.6E+02 0.0035 26.4 5.2 69 70-149 58-128 (300)
96 PF14662 CCDC155: Coiled-coil 25.3 4.2E+02 0.0091 22.4 9.9 86 46-138 25-113 (193)
97 TIGR01808 CM_M_hiGC-arch monof 25.1 34 0.00073 23.6 0.7 19 79-97 1-19 (74)
98 COG1196 Smc Chromosome segrega 24.5 7.2E+02 0.016 24.9 16.2 16 78-93 828-843 (1163)
99 PF10168 Nup88: Nuclear pore c 23.5 6.9E+02 0.015 24.3 15.0 95 21-120 539-649 (717)
100 KOG0996 Structural maintenance 23.5 9.4E+02 0.02 25.9 15.4 120 19-152 779-917 (1293)
101 PRK10622 pheA bifunctional cho 23.4 51 0.0011 29.2 1.7 20 76-95 3-22 (386)
102 PF14712 Snapin_Pallidin: Snap 23.3 2.5E+02 0.0054 19.1 8.8 74 23-96 5-82 (92)
103 KOG0225 Pyruvate dehydrogenase 23.1 49 0.0011 30.7 1.6 41 71-111 293-338 (394)
104 PF05384 DegS: Sensor protein 22.9 1.7E+02 0.0037 23.5 4.4 42 67-108 16-57 (159)
105 PRK11032 hypothetical protein; 22.8 1.9E+02 0.0042 23.3 4.7 55 44-101 11-66 (160)
106 cd00890 Prefoldin Prefoldin is 22.7 2.8E+02 0.006 19.4 7.6 27 47-73 17-43 (129)
107 PRK09239 chorismate mutase; Pr 22.6 57 0.0012 24.1 1.6 33 79-111 11-46 (104)
108 KOG0612 Rho-associated, coiled 22.4 1E+03 0.022 25.7 11.1 99 54-153 462-578 (1317)
109 TIGR01791 CM_archaeal chorisma 22.1 39 0.00084 23.1 0.6 31 81-111 2-35 (83)
110 PHA01750 hypothetical protein 22.0 62 0.0013 23.9 1.6 27 74-100 45-71 (75)
111 COG4026 Uncharacterized protei 21.9 5.8E+02 0.013 22.9 9.2 28 108-135 137-164 (290)
112 PRK12595 bifunctional 3-deoxy- 21.9 58 0.0013 28.6 1.7 22 76-97 2-23 (360)
113 PF11932 DUF3450: Protein of u 21.5 3.3E+02 0.0071 22.0 5.9 89 46-141 52-153 (251)
114 cd07655 F-BAR_PACSIN The F-BAR 21.3 4.7E+02 0.01 21.5 12.3 60 87-146 170-229 (258)
115 PF15275 PEHE: PEHE domain; PD 21.1 2.1E+02 0.0045 21.5 4.4 30 18-47 23-52 (123)
116 cd07672 F-BAR_PSTPIP2 The F-BA 21.0 4.8E+02 0.01 21.6 11.1 57 56-120 131-189 (240)
117 TIGR01797 CM_P_1 chorismate mu 20.6 48 0.001 22.9 0.8 17 81-97 2-18 (83)
118 PRK09546 zntB zinc transporter 20.4 3.2E+02 0.007 22.7 5.7 48 56-103 160-207 (324)
119 KOG0717 Molecular chaperone (D 20.3 87 0.0019 29.9 2.6 26 53-78 43-68 (508)
120 PRK11199 tyrA bifunctional cho 20.3 55 0.0012 28.2 1.3 36 76-111 1-39 (374)
121 PF03954 Lectin_N: Hepatic lec 20.3 2.5E+02 0.0053 22.7 4.8 54 62-115 64-117 (138)
No 1
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=100.00 E-value=4.9e-75 Score=461.07 Aligned_cols=150 Identities=73% Similarity=0.965 Sum_probs=143.8
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHH
Q 045900 4 LGSSNGSGLSTDEIEDEEMARMAIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVV 83 (155)
Q Consensus 4 l~~~~~~~~~~~~~~~ee~srsals~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~v 83 (155)
.|..+.+++++.++++++|||||+|+|+|+|++|||+||+||+|||+|||||||+|||||+||+|||+|+|||||||++|
T Consensus 10 ~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~v 89 (159)
T PF04949_consen 10 SGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMV 89 (159)
T ss_pred CCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 34444555777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 045900 84 RKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEELSKSIES 153 (155)
Q Consensus 84 RKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsk~ies 153 (155)
|||||+|||+|||||++|||||+|||+||+||||||+||++||++||+||+||||+|||||||||++|++
T Consensus 90 RkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ies 159 (159)
T PF04949_consen 90 RKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEIES 159 (159)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=94.93 E-value=0.11 Score=38.90 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchh
Q 045900 35 EEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLG 98 (155)
Q Consensus 35 eEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg 98 (155)
+++...--+|+++.+.+.+.+|.-..+ .+..=|..|+-|++.||..++.|||.+...|..|.
T Consensus 55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455666666666666665543 56777899999999999999999999999887764
No 3
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=94.52 E-value=0.2 Score=38.87 Aligned_cols=62 Identities=24% Similarity=0.389 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchh
Q 045900 35 EEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLG 98 (155)
Q Consensus 35 eEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg 98 (155)
+.+...--.|++++..+++++|.--.. .+..-|..|+=|+|+||..+..|||.++++|.-|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444466667777777777654321 13345888999999999999999999999886553
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.80 E-value=7 Score=36.08 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 045900 79 EVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEELSKS 150 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsk~ 150 (155)
..+.++++|+.++++|+-+|....+-..+|.++.+-|+.-.+...+|.+..-.|-.-=++++-++.+.+..+
T Consensus 952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~ 1023 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999888889999999999999999999998887777766666666664444433
No 5
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.33 E-value=1.8 Score=31.70 Aligned_cols=55 Identities=31% Similarity=0.431 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhH
Q 045900 45 KERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSI 101 (155)
Q Consensus 45 rekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~sc 101 (155)
++.+.+--.++..-.+||+.+-.+++.| |++.+|..++..|..++.+++-++.+-
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444455566688999999999988 889999888888888887777665443
No 6
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=86.95 E-value=9.8 Score=28.20 Aligned_cols=62 Identities=27% Similarity=0.309 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHH
Q 045900 77 RKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERV 139 (155)
Q Consensus 77 RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErl 139 (155)
..++...|-.|-..-.+++.|...|+.|+..|..+...||.-. -++.|-...-+.=.+||.+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEESEEL 115 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888999999999999999999999999764 3344444444444444444
No 7
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.92 E-value=35 Score=31.34 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHHhhhh
Q 045900 121 EKAQLVTALMELLTE-SERVRMKKLEELSKSIE 152 (155)
Q Consensus 121 EKa~LV~~LmELv~E-SErlRmkKLEELsk~ie 152 (155)
.......++.+++.+ .+.++-.+...|++.+.
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~ 512 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEIT 512 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455554443 34566666666666554
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.25 E-value=30 Score=29.35 Aligned_cols=88 Identities=20% Similarity=0.305 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHH
Q 045900 43 EVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEK 122 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEK 122 (155)
++..++.+....++.+..+|...-.| +++-...++..+|..|..++-+|.-..+.-...+.+...--...++.+.+|
T Consensus 177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 177 ELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777776666555 555566889999999999998888888888888888777777777777778
Q ss_pred HHHHHHHHHHh
Q 045900 123 AQLVTALMELL 133 (155)
Q Consensus 123 a~LV~~LmELv 133 (155)
.++...+-++=
T Consensus 254 ~~l~~eI~e~~ 264 (325)
T PF08317_consen 254 QELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHH
Confidence 77776666543
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.65 E-value=65 Score=32.23 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 045900 77 RKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTAL 129 (155)
Q Consensus 77 RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~L 129 (155)
..++...+..|..+..+|-||.+.-.+...+|.+.....+.+..+...-++.+
T Consensus 894 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1311)
T TIGR00606 894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778888888888887777777777776666666655544444443
No 10
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=79.72 E-value=30 Score=27.80 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=42.9
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHH-HHHHHhhhhcccchhhhHHHhHHHHHHHHHHh
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVV-RKKIDMANRELKPLGQSIQKKEREYKEALEAF 115 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~v-RKkID~vnreLKpLg~scqKKEkEYKeaLEaf 115 (155)
+||...---|.+...+......+.+.+++-+++|+... +.|+...+.-|.-...+=..-.++.-++.++|
T Consensus 149 ~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~ 219 (224)
T cd07623 149 DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAF 219 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455556677778888888888888888876 55666665555555554444444444444444
No 11
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=77.55 E-value=26 Score=25.83 Aligned_cols=29 Identities=28% Similarity=0.278 Sum_probs=20.5
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccc
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTD 74 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~D 74 (155)
+.++++++.++.....+....+.|+.+..
T Consensus 23 ~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 23 EALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677777777777777777777776653
No 12
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=74.90 E-value=90 Score=30.73 Aligned_cols=117 Identities=32% Similarity=0.471 Sum_probs=74.7
Q ss_pred HHHHHHH----hhhHHHHHHHHHHH-------------HHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHH
Q 045900 24 RMAIATF----QAREEEIERKKTEV-------------KERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKK 86 (155)
Q Consensus 24 rsals~F----~akEeEIErkKmeV-------------rekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKk 86 (155)
|.=|.++ .|++.+.+.--.+| =++-++++..+++|--|++-=-.+|-.+-|-.-.+|..+.+|
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444 55666555544443 345566666777776666543444444555555689999999
Q ss_pred HHhhhhcccchhhhHHHhHHHHH----------------HHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045900 87 IDMANRELKPLGQSIQKKEREYK----------------EALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEEL 147 (155)
Q Consensus 87 ID~vnreLKpLg~scqKKEkEYK----------------eaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLEEL 147 (155)
||.+...|+ .|++... .|++.+.+-+.+|..++..|-++-..+++-+.--|+-+
T Consensus 401 ie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~ 470 (775)
T PF10174_consen 401 IENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETY 470 (775)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887765 3444333 45556668889999999998888777776665544433
No 13
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.84 E-value=39 Score=26.50 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhH
Q 045900 47 RVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSI 101 (155)
Q Consensus 47 kV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~sc 101 (155)
.++..-..+++...|++.|+..++. .++++..-|++|+.....|......-
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~----~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIER----LRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777778888777765 46777777777777766666555443
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.29 E-value=1e+02 Score=30.99 Aligned_cols=104 Identities=13% Similarity=0.257 Sum_probs=67.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccc---hhHHHHHHHHHHHHhhhhcccchhhhHHH
Q 045900 27 IATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTD---PMRKEVAVVRKKIDMANRELKPLGQSIQK 103 (155)
Q Consensus 27 ls~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~D---P~RKEV~~vRKkID~vnreLKpLg~scqK 103 (155)
++..+++..++...+..+...++ +...-..+|..+.++++.+.. -...++.-+...++.+..++.-+-.....
T Consensus 859 I~~Lq~ki~el~~~klkl~~~l~----~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1311)
T TIGR00606 859 IQHLKSKTNELKSEKLQIGTNLQ----RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555333 333333445555555555433 25677888888889999998888899999
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 045900 104 KEREYKEALEAFNEKSKEKAQLVTALMELLT 134 (155)
Q Consensus 104 KEkEYKeaLEafNEKnkEKa~LV~~LmELv~ 134 (155)
++.+....+..|+..-..-..+...+-+.+.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~ 965 (1311)
T TIGR00606 935 SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888877776666666665444
No 15
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=73.41 E-value=26 Score=23.82 Aligned_cols=71 Identities=25% Similarity=0.406 Sum_probs=49.1
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccchh--------------HH-HHHHHHHHHHhhhhcccchhhhHHHhHHHHHH
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTDPM--------------RK-EVAVVRKKIDMANRELKPLGQSIQKKEREYKE 110 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~DP~--------------RK-EV~~vRKkID~vnreLKpLg~scqKKEkEYKe 110 (155)
..|.++++.++.+-+++.....||+.+.|+. +. =...+.++++.+..+++-|-......++.+++
T Consensus 15 ~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 15 QQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999997761 12 23456666777777766666666555665555
Q ss_pred HHHHhh
Q 045900 111 ALEAFN 116 (155)
Q Consensus 111 aLEafN 116 (155)
.=..++
T Consensus 95 ~~~~l~ 100 (106)
T PF01920_consen 95 LKKKLY 100 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.41 E-value=79 Score=30.16 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 045900 106 REYKEALEAFNEKSKEKAQLVTALMELLTESERVR 140 (155)
Q Consensus 106 kEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlR 140 (155)
+++.+-+..++.+.+|+-.+..++.++..+-|.+.
T Consensus 223 ~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~ 257 (546)
T PF07888_consen 223 RELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE 257 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777777777766555554
No 17
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.27 E-value=44 Score=25.59 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHHhhh---hcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045900 74 DPMRKEVAVVRKKIDMAN---RELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALME 131 (155)
Q Consensus 74 DP~RKEV~~vRKkID~vn---reLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmE 131 (155)
|-++.|+-..-+..|.++ .++.-|-.-++-.+..|.-+|+.|-||+-+=-.|=..+.+
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 445556655555555442 3444556667777889999999999988665555444433
No 18
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.60 E-value=1.3e+02 Score=31.26 Aligned_cols=55 Identities=29% Similarity=0.463 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhc---cchhHHHHHHHHHHHHhhhhc
Q 045900 39 RKKTEVKERVELQLGRAEEESRRLAQIWEELEVL---TDPMRKEVAVVRKKIDMANRE 93 (155)
Q Consensus 39 rkKmeVrekV~aqLGrvEeetkrLa~ireELE~l---~DP~RKEV~~vRKkID~vnre 93 (155)
-+.-++.+++....|.+++...+|..|-..+..+ +|-+--|+...|+..|.+=|+
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3455677888899999999999998887765544 455667788888888777664
No 19
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=68.83 E-value=60 Score=33.46 Aligned_cols=93 Identities=27% Similarity=0.334 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHH
Q 045900 45 KERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQ 124 (155)
Q Consensus 45 rekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~ 124 (155)
++++..++--++++.+-++ ...-|++.+++..+.+|+.+-+++.--+..|+.+ .+-+++.-++=..
T Consensus 257 ~~r~k~~~r~l~k~~~pi~-------~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~-------~ek~~~~~~~v~~ 322 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIE-------DKKEELESEKKETRSKISQKQRELNEALAKVQEK-------FEKLKEIEDEVEE 322 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhh-------hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4444444444444444444 4444555588899999999999999888888765 3344444444444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 045900 125 LVTALMELLTESERVRMKKLEELSKSIE 152 (155)
Q Consensus 125 LV~~LmELv~ESErlRmkKLEELsk~ie 152 (155)
+.+.|-.+-...+ .|++-++..-|.|.
T Consensus 323 ~~~~le~lk~~~~-~rq~~i~~~~k~i~ 349 (1072)
T KOG0979|consen 323 KKNKLESLKKAAE-KRQKRIEKAKKMIL 349 (1072)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4555544444333 45666665555554
No 20
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=68.63 E-value=11 Score=26.99 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcc
Q 045900 44 VKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANREL 94 (155)
Q Consensus 44 VrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreL 94 (155)
+++++..-++ .++=..|++|++.++.+...+|...|+.|=..=|+|
T Consensus 56 ~~~~il~nms-----~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l 101 (110)
T PF01706_consen 56 LREKILSNMS-----KRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRL 101 (110)
T ss_dssp HHHHHHTTS------HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888888875 244457999999999999999999999986554444
No 21
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=67.68 E-value=40 Score=31.88 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=46.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHh---HHHHHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 045900 29 TFQAREEEIERKKTEVKERVELQLGRAEEES---RRLAQIWEELEVLTDPMRKEVAVVRKKIDMAN 91 (155)
Q Consensus 29 ~F~akEeEIErkKmeVrekV~aqLGrvEeet---krLa~ireELE~l~DP~RKEV~~vRKkID~vn 91 (155)
.+=.+|-++-+-+.+++.+|+.++.+-..|- ..|..|++||-... .--.|++.+|+||+..+
T Consensus 196 ~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~-~~~~~~~~~~~k~~~~~ 260 (775)
T TIGR00763 196 ELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEK-DDKDELEKLKEKLEELK 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CchhHHHHHHHHHHhcC
Confidence 3444566777788899999999998766553 36778999995443 34568999999998765
No 22
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=66.85 E-value=63 Score=25.68 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHH
Q 045900 45 KERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVV 83 (155)
Q Consensus 45 rekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~v 83 (155)
.+||...-..+.+-..+......+.+.+++-+++||...
T Consensus 142 ~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF 180 (216)
T cd07627 142 QEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERF 180 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666677777777777777777777777665
No 23
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=64.99 E-value=17 Score=34.90 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=48.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHh---HHHHHHHHHHhhccchhHHHHHHHHHHHHhhh
Q 045900 29 TFQAREEEIERKKTEVKERVELQLGRAEEES---RRLAQIWEELEVLTDPMRKEVAVVRKKIDMAN 91 (155)
Q Consensus 29 ~F~akEeEIErkKmeVrekV~aqLGrvEeet---krLa~ireELE~l~DP~RKEV~~vRKkID~vn 91 (155)
.+=.+|-++-+-+.++..+|+.++.+-..|- ..|..|++|| |..|+--.|+..+|+||+..+
T Consensus 198 ~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~el-g~~~~~~~~~~~~~~~~~~~~ 262 (784)
T PRK10787 198 AMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL-GEMDDAPDENEALKRKIDAAK 262 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccc-cCCCcchhHHHHHHHHHHhcC
Confidence 3446677777888899999999998766553 4677888999 555666779999999998765
No 24
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.84 E-value=78 Score=27.75 Aligned_cols=85 Identities=26% Similarity=0.359 Sum_probs=54.1
Q ss_pred HHHHhhhhHHHhHHHHHHHHHHhhccch--------hH-HHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhh
Q 045900 48 VELQLGRAEEESRRLAQIWEELEVLTDP--------MR-KEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEK 118 (155)
Q Consensus 48 V~aqLGrvEeetkrLa~ireELE~l~DP--------~R-KEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEK 118 (155)
+-+.|+.+|..-=.+.-+|+=|+.+.+- ++ -|.+..+++|.....+|.-+-..+-++|++++++-+.+-
T Consensus 154 ~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~-- 231 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERIT-- 231 (269)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3344555554443444444333333322 22 266677889999999999999999999999999988872
Q ss_pred hHHHHHHHHHHHHHhhHHHHH
Q 045900 119 SKEKAQLVTALMELLTESERV 139 (155)
Q Consensus 119 nkEKa~LV~~LmELv~ESErl 139 (155)
..-.+|.+|=-+|-|+
T Consensus 232 -----e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 232 -----EMKGRLGELEMESTRL 247 (269)
T ss_pred -----HHHHHHHHHHHHHHHH
Confidence 3344555655555443
No 25
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=62.82 E-value=53 Score=23.38 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcc
Q 045900 24 RMAIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANREL 94 (155)
Q Consensus 24 rsals~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreL 94 (155)
...+..|.++-+++..---....++..--.+.+.-|+-| --|++.+..|.|||..++..|
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l-----------~~mK~DLd~i~krir~lk~kl 80 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLL-----------KEMKKDLDYIFKRIRSLKAKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777665444433333333333333333333 337889999999999998765
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.47 E-value=1.5e+02 Score=31.27 Aligned_cols=93 Identities=29% Similarity=0.383 Sum_probs=66.9
Q ss_pred HHHHHHhhhhHHHhHHHHHHHH-------HHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhh
Q 045900 46 ERVELQLGRAEEESRRLAQIWE-------ELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEK 118 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ire-------ELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEK 118 (155)
++|..||+.++.+-+++..+-+ -+.+--.-..+++...++.+|.++-+++.+-.--..-+.+|++|.++--|-
T Consensus 910 ~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~ 989 (1293)
T KOG0996|consen 910 EKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEI 989 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777666654432 122222345688888999999999999999998888999999999999998
Q ss_pred hHHHHHHHHHHHHHhhHHHHH
Q 045900 119 SKEKAQLVTALMELLTESERV 139 (155)
Q Consensus 119 nkEKa~LV~~LmELv~ESErl 139 (155)
+++=.+++..+ +-+..++=-
T Consensus 990 k~~~~~~k~~~-e~i~k~~~~ 1009 (1293)
T KOG0996|consen 990 KKELRDLKSEL-ENIKKSENE 1009 (1293)
T ss_pred HHHHHHHHHHH-HHHHHHHHH
Confidence 88877777654 444444433
No 27
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=61.36 E-value=1.6e+02 Score=28.41 Aligned_cols=88 Identities=28% Similarity=0.359 Sum_probs=63.5
Q ss_pred HHHHHHhhhhHHHhHHHHHH----------HHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHh
Q 045900 46 ERVELQLGRAEEESRRLAQI----------WEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAF 115 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~i----------reELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEaf 115 (155)
++...+|....+++..|+.. -.+|+.+.+-.++++..++..+-..+..++-|-..|.+.-++|.+++..+
T Consensus 199 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (670)
T KOG0239|consen 199 SELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKES 278 (670)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554 24677777777888888888888899999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 045900 116 NEKSKEKAQLVTALMELL 133 (155)
Q Consensus 116 NEKnkEKa~LV~~LmELv 133 (155)
+..-.+-+.+-..|.+-.
T Consensus 279 ~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 279 NTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887444444444444443
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=61.20 E-value=1.4e+02 Score=27.65 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=34.4
Q ss_pred HHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045900 68 ELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALME 131 (155)
Q Consensus 68 ELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmE 131 (155)
.+..+-+|..+.+..+++.++.+..++.-|-..-..-+..++++-+.++.. .++...+..|..
T Consensus 297 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~-~~~~~~~~~l~~ 359 (880)
T PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL-KELEKRLEELEE 359 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344445577777778888777777766665544444444444444444433 333333333333
No 29
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=58.59 E-value=15 Score=26.73 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchh
Q 045900 44 VKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLG 98 (155)
Q Consensus 44 VrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg 98 (155)
.|+--+.||..|-+-.+.|-....--.-.+|..+.-..-.+-+|-.||++|.-|.
T Consensus 29 ~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~~~L~~~~~~Iqevn~~l~~l~ 83 (84)
T PF11414_consen 29 ERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHREQLEFLLAQIQEVNRCLFGLI 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCcccccccchhhHHHHHHHHHHHHHHHhc
Confidence 4777888999999988888888876777889999999999999999999987653
No 30
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=57.34 E-value=1.1e+02 Score=25.40 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=41.5
Q ss_pred HHHHhhhHHHHHHHHHHH--------HHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHH-HHHHHhhhhcccc
Q 045900 27 IATFQAREEEIERKKTEV--------KERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVV-RKKIDMANRELKP 96 (155)
Q Consensus 27 ls~F~akEeEIErkKmeV--------rekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~v-RKkID~vnreLKp 96 (155)
+..++.-+.++.+++-.+ -||++.----|.+--.+..+.+.+.+.+++-+|+||... +.|++....-|.-
T Consensus 132 ~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~ 210 (234)
T cd07664 132 WQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665331 123333233344455677778888999999999999877 4555544444433
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=55.02 E-value=1.8e+02 Score=26.96 Aligned_cols=78 Identities=27% Similarity=0.319 Sum_probs=43.2
Q ss_pred HHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHH---HHHHHHHHhhhhhHHHHH
Q 045900 48 VELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKER---EYKEALEAFNEKSKEKAQ 124 (155)
Q Consensus 48 V~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEk---EYKeaLEafNEKnkEKa~ 124 (155)
+..++..++.....+..|.+.|. ..+++++.+.+.|..+..++..+....+..+. .+.++.+.|+..+.+...
T Consensus 174 ~~~~~~~l~~~l~~l~~i~~~l~----~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~ 249 (880)
T PRK03918 174 IKRRIERLEKFIKRTENIEELIK----EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443 34566677777777777777777766655543 455555556655555544
Q ss_pred HHHHH
Q 045900 125 LVTAL 129 (155)
Q Consensus 125 LV~~L 129 (155)
+-..+
T Consensus 250 l~~~~ 254 (880)
T PRK03918 250 LEGSK 254 (880)
T ss_pred HHHHH
Confidence 44443
No 32
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=51.60 E-value=17 Score=30.76 Aligned_cols=38 Identities=26% Similarity=0.600 Sum_probs=28.2
Q ss_pred ccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 045900 94 LKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLT 134 (155)
Q Consensus 94 LKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ 134 (155)
+-|+|++|-..||. +.+.|+.+.+.+..||..|.+-..
T Consensus 103 ~SpiGr~a~~eer~---~f~~~D~~~~iR~~~v~~L~~~f~ 140 (220)
T PF03332_consen 103 FSPIGRNASQEERD---EFDEYDKKHKIREKLVEALKKEFP 140 (220)
T ss_dssp E-SS-TTS-HHHHH---HHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred ECcccCcCCHHHHH---hhhhcChhhhHHHHHHHHHHHHCC
Confidence 46999999987764 566789999999999999886543
No 33
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.38 E-value=1.8e+02 Score=25.89 Aligned_cols=59 Identities=27% Similarity=0.360 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 045900 74 DPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMEL 132 (155)
Q Consensus 74 DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmEL 132 (155)
|-.++++..+|=+.|..|...+-+-.-.+-.=.++++.++-+++--.+.-.+..+|.+|
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666665555555544444455555555554444444444444443
No 34
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=51.05 E-value=1.1e+02 Score=25.36 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHH------HHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHH-------HHHHhhhhcccchh
Q 045900 32 AREEEIERKKTEVKE------RVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVR-------KKIDMANRELKPLG 98 (155)
Q Consensus 32 akEeEIErkKmeVre------kV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vR-------KkID~vnreLKpLg 98 (155)
.-+++..+-..++.+ ....++.+++++..+|..-+.+++.+..-++.+..+-- .+|+.+..++.-|-
T Consensus 16 q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 16 QMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE 95 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555543 34678889999999999999998887776666554433 37777777777777
Q ss_pred hhHHHhHHHH
Q 045900 99 QSIQKKEREY 108 (155)
Q Consensus 99 ~scqKKEkEY 108 (155)
..-++|+.|-
T Consensus 96 ee~~~ke~Ea 105 (246)
T PF00769_consen 96 EESERKEEEA 105 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777663
No 35
>smart00766 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. DnaG_DnaB_bind defines a domain of primase required for functional interaction with DnaB that attracts primase to the replication fork. DnaG_DnaB_bind is responsible for the interaction between DnaG and DnaB.
Probab=50.84 E-value=49 Score=21.50 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHhhh--hhHHHHHHHHHHHH-HhhHHHHHHHHH
Q 045900 102 QKKEREYKEALEAFNE--KSKEKAQLVTALME-LLTESERVRMKK 143 (155)
Q Consensus 102 qKKEkEYKeaLEafNE--KnkEKa~LV~~LmE-Lv~ESErlRmkK 143 (155)
..-+.+|.+++..++. -.++..+|..++.+ .++..|+.+++.
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~~e~~~l~~ 123 (125)
T smart00766 79 ENLEEEFLDTLARLRKQLLERRIEELIAKLRRSGLTVEEKKELQA 123 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3445688888888866 45677788887776 778888876654
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=50.78 E-value=2.1e+02 Score=26.50 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHhhhhh
Q 045900 106 REYKEALEAFNEKSKEKAQLVTALMELLTESERVR---MKKLEELSKSIES 153 (155)
Q Consensus 106 kEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlR---mkKLEELsk~ies 153 (155)
..|.....-|+.-...+.+|-..+-++-.+..++- +.-+..++.++..
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~ 1043 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNE 1043 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666666666666666 6777777766643
No 37
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.73 E-value=1.7e+02 Score=25.45 Aligned_cols=90 Identities=23% Similarity=0.275 Sum_probs=64.6
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHH
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQL 125 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~L 125 (155)
..+......+..+...|.++-.|++.. | .-|...+|.+|..++.++.+.-+.-.-++.+..+--..-++.+..|+.+
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~-d--~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDC-D--PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555443 2 3588889999999999999998888888888888888888888889988
Q ss_pred HHHHHHHhhHHHH
Q 045900 126 VTALMELLTESER 138 (155)
Q Consensus 126 V~~LmELv~ESEr 138 (155)
.+.+.++=...+.
T Consensus 252 ~~~I~~ae~~~~~ 264 (312)
T smart00787 252 NTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 8888876554443
No 38
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=47.05 E-value=1.4e+02 Score=24.14 Aligned_cols=67 Identities=30% Similarity=0.454 Sum_probs=39.6
Q ss_pred HHHHhhhhHHHhHHHHH-------HHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhh
Q 045900 48 VELQLGRAEEESRRLAQ-------IWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEK 118 (155)
Q Consensus 48 V~aqLGrvEeetkrLa~-------ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEK 118 (155)
+..-|+|.|||..|-+. +|+.||.+ ++.-..+.-=|..+..++.-+-.--..||.+|..--++||.-
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~----~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y 135 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQA----RKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY 135 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34478999999999887 55555532 222333333333333333334344456788888877887754
No 39
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=46.86 E-value=1.4e+02 Score=23.52 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=33.8
Q ss_pred chhhhHHHhHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhhHHHHHHHHHHHH
Q 045900 96 PLGQSIQKKEREYKEALEAFNEKSKEK-AQLVTALMELLTESERVRMKKLEE 146 (155)
Q Consensus 96 pLg~scqKKEkEYKeaLEafNEKnkEK-a~LV~~LmELv~ESErlRmkKLEE 146 (155)
--.+.|.+-..+|..++.+||.-...- -..+..+++-+..-|..|...|-+
T Consensus 172 k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~ 223 (251)
T cd07653 172 LKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVE 223 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHH
Confidence 335678889999999999998874433 234555555555555566655543
No 40
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=45.68 E-value=19 Score=32.03 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=31.0
Q ss_pred HHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHH
Q 045900 68 ELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQK 103 (155)
Q Consensus 68 ELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqK 103 (155)
=|..|.=|+|.||..|-|+|..+-|+++-|...-..
T Consensus 279 ~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 279 LLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999988665433
No 41
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.47 E-value=96 Score=26.04 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHH--H-HHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHH
Q 045900 23 ARMAIATFQAREEEIERKKTE--V-KERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVR 84 (155)
Q Consensus 23 srsals~F~akEeEIErkKme--V-rekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vR 84 (155)
+..|-+.-+.|.+..+|-|+- + .+||..-+.-+++.++.-......++.+++-|+.|+...=
T Consensus 131 ~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~ 195 (230)
T cd07625 131 LIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWT 195 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888863 3 5699999999999999999999999999999999886553
No 42
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.85 E-value=2.3e+02 Score=25.25 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=57.1
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhH
Q 045900 63 AQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTE 135 (155)
Q Consensus 63 a~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~E 135 (155)
...+..|..|++-.-+-+..|.+|=..+|.+|.||.+--...-.++.++-+.||+-+.--..+-..|-++-.+
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee 309 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEE 309 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445577777777778888888888999999999999888888888899999988887666666655554433
No 43
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.92 E-value=1.9e+02 Score=24.22 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=52.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHH---HHHHhhhhcccchhhhH
Q 045900 26 AIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVR---KKIDMANRELKPLGQSI 101 (155)
Q Consensus 26 als~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vR---KkID~vnreLKpLg~sc 101 (155)
+|.-.+.|-.+.++.|-+|. ..++.++.|.+.|.+.+.|.+.|-+--+.=|+.+| -=|+.++..+|-+-..|
T Consensus 2 ~i~~ir~K~~~lek~k~~i~----~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEIL----QEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888776655 55678999999999999999999887776666654 44555555555444433
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=43.08 E-value=2.8e+02 Score=25.87 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHH
Q 045900 75 PMRKEVAVVRKKIDMANRELKPLGQSIQKKEREY 108 (155)
Q Consensus 75 P~RKEV~~vRKkID~vnreLKpLg~scqKKEkEY 108 (155)
+.+.+...+++.++.++..|..+...+......|
T Consensus 650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i 683 (880)
T PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556555555555555544444
No 45
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=42.52 E-value=28 Score=24.67 Aligned_cols=32 Identities=22% Similarity=0.043 Sum_probs=24.9
Q ss_pred HHHHhhhhHHHhHHHHHHHHHHhhccchhHHH
Q 045900 48 VELQLGRAEEESRRLAQIWEELEVLTDPMRKE 79 (155)
Q Consensus 48 V~aqLGrvEeetkrLa~ireELE~l~DP~RKE 79 (155)
+.+.+...+.--.++..+.+|+-+++.|-|||
T Consensus 67 ~l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (98)
T cd01279 67 IIELYPQVLLLQCRSCEHATELIGCAKPCRKE 98 (98)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhcccccccC
Confidence 33455666666778888899999999999885
No 46
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=42.03 E-value=1.2e+02 Score=30.48 Aligned_cols=56 Identities=25% Similarity=0.384 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHh---HHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 045900 33 REEEIERKKTEVKERVELQLGRAEEES---RRLAQIWEELEVLTDPMRKEVAVVRKKIDM 89 (155)
Q Consensus 33 kEeEIErkKmeVrekV~aqLGrvEeet---krLa~ireELE~l~DP~RKEV~~vRKkID~ 89 (155)
+|-++-+-...++.||..|+..-..|- -.|..|++||-...|.- .||+.+|+||+.
T Consensus 203 ~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~ 261 (782)
T COG0466 203 KEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEK 261 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhh
Confidence 344444566778999999998776663 46888999998776655 999999999984
No 47
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.79 E-value=1.2e+02 Score=23.45 Aligned_cols=40 Identities=18% Similarity=0.425 Sum_probs=32.1
Q ss_pred HhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHH
Q 045900 69 LEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREY 108 (155)
Q Consensus 69 LE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEY 108 (155)
...-.++.-.|++...+.|+..+.++.-|-.-+..-.+||
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567788899999999998888888888888888877
No 48
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=40.78 E-value=74 Score=20.12 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHhhc
Q 045900 42 TEVKERVELQLGRAEEESRRLAQIWEELEVL 72 (155)
Q Consensus 42 meVrekV~aqLGrvEeetkrLa~ireELE~l 72 (155)
-.+.+-+..++..+++....|+.++..|..+
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~L~~l 65 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQLEHL 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455778888888888888899888888754
No 49
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=40.71 E-value=2.2e+02 Score=23.92 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=25.0
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHH
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVV 83 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~v 83 (155)
||++.-..-|.+-.++..+.+.+.+.+++-||+||...
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rF 196 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRF 196 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554445555566667777777777777777777654
No 50
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=39.88 E-value=21 Score=30.41 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=27.6
Q ss_pred HHhhccchhHHHHHHHHHHHHhhhhcccchh
Q 045900 68 ELEVLTDPMRKEVAVVRKKIDMANRELKPLG 98 (155)
Q Consensus 68 ELE~l~DP~RKEV~~vRKkID~vnreLKpLg 98 (155)
=|..|.=|||.||..|-|+|..+=|+++-|.
T Consensus 262 ~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 262 YLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999987663
No 51
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=39.55 E-value=31 Score=27.26 Aligned_cols=37 Identities=41% Similarity=0.674 Sum_probs=29.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhc
Q 045900 110 EALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEELSKSIESI 154 (155)
Q Consensus 110 eaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsk~iesl 154 (155)
+|.|+-|.-.-|||.|||...||- .-|+.||.-+++.
T Consensus 46 ~a~e~~~d~~EEKaRlItQVLELQ--------nTLdDLSqRVdsV 82 (120)
T KOG3650|consen 46 DAVEAENDVEEEKARLITQVLELQ--------NTLDDLSQRVDSV 82 (120)
T ss_pred cccccccChHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 567888888899999999999973 4577777777654
No 52
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=39.50 E-value=1.3e+02 Score=27.87 Aligned_cols=69 Identities=26% Similarity=0.279 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHH-------Hh
Q 045900 61 RLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALME-------LL 133 (155)
Q Consensus 61 rLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmE-------Lv 133 (155)
|=+.+++|+++|..-.+= --.||+|||.|----.--+-.| .||--..+|.||+-++-+ +-
T Consensus 138 re~~l~~e~~~l~~ql~i--------qt~vNsELK~LlVASvgddLQ~-----~ve~LtedK~qLa~~~~~~~~nl~~~~ 204 (383)
T KOG4074|consen 138 REAELERELDLLRKQLNI--------QTKVNSELKRLLVASVGDDLQG-----QVEALTEDKVQLAHRVDEYMGNLMVED 204 (383)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 334555566554332221 1358999998754444433334 366677899999876655 44
Q ss_pred hHHHHHHHH
Q 045900 134 TESERVRMK 142 (155)
Q Consensus 134 ~ESErlRmk 142 (155)
.++||+|.+
T Consensus 205 Eq~erl~iq 213 (383)
T KOG4074|consen 205 EQSERLRIQ 213 (383)
T ss_pred HHHHHHhhH
Confidence 578888864
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.06 E-value=4.1e+02 Score=26.54 Aligned_cols=63 Identities=21% Similarity=0.408 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHH---HHHhhHHHHHHHHHH
Q 045900 82 VVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTAL---MELLTESERVRMKKL 144 (155)
Q Consensus 82 ~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~L---mELv~ESErlRmkKL 144 (155)
.++++|+.+.+++.-||..=-.---+|.++.+-|++-+.+...|.... .+.+.+=.+.+-..+
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f 1011 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERF 1011 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999777777777888899999999999999988886554 444444444443333
No 54
>PRK01156 chromosome segregation protein; Provisional
Probab=38.54 E-value=3.5e+02 Score=25.58 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=23.0
Q ss_pred HhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccch
Q 045900 51 QLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPL 97 (155)
Q Consensus 51 qLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpL 97 (155)
.++.++.+-.+|...+.+++.. +.++..+...|+.++.++.-+
T Consensus 620 ~~~~le~~~~~le~~~~~l~~~----~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 620 SIREIENEANNLNNKYNEIQEN----KILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544 555555555555555555444
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.02 E-value=2.7e+02 Score=24.22 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=34.7
Q ss_pred hhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHH
Q 045900 54 RAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTA 128 (155)
Q Consensus 54 rvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~ 128 (155)
+..+-..++..++..+...- ..+..+.+++..+..++.-|...-...+.++++..+-+++-+.+++.+...
T Consensus 331 ~~~~~~~~i~el~~~i~~~~----~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444322 223334444444444444444444445556666666666666665555443
No 56
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.66 E-value=2e+02 Score=22.54 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHH
Q 045900 77 RKEVAVVRKKIDMANRELKPLGQSIQ 102 (155)
Q Consensus 77 RKEV~~vRKkID~vnreLKpLg~scq 102 (155)
+..+..++++|+..+..+.-+-+.-+
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333333
No 57
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=37.17 E-value=1.1e+02 Score=24.70 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=36.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Q 045900 24 RMAIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWE 67 (155)
Q Consensus 24 rsals~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ire 67 (155)
..+++-++.++++.-+++.+.-.-+...--.||++-+++|.=|.
T Consensus 61 ~~~l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk~aeEr~ 104 (149)
T PF15346_consen 61 EEALEEARRKEEEERKKREELEKILEENRRKVEEAQRKLAEERL 104 (149)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999888888888888888888888876443
No 58
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.53 E-value=1.6e+02 Score=21.17 Aligned_cols=29 Identities=31% Similarity=0.372 Sum_probs=21.9
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccc
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTD 74 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~D 74 (155)
+.+++++..+......+....+.|+.+..
T Consensus 16 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 16 EELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677788888888888888888887754
No 59
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=36.50 E-value=89 Score=26.99 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcc
Q 045900 43 EVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANREL 94 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreL 94 (155)
++|++++.-+. .|.-..|++|++.||-.--++|+..|+.|=.+=|+|
T Consensus 274 e~~~~il~nmS-----~R~a~~l~ee~~~~GpV~~sdvE~Aq~~Iv~~~r~L 320 (338)
T TIGR00207 274 PLREKFLNNMS-----QRAAEILKEDMEFLGPVRLKDVEEAQKKIVSIVRKL 320 (338)
T ss_pred HHHHHHHHHhh-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 47888887764 233446899999999999999999999998777666
No 60
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=35.30 E-value=84 Score=21.50 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhh-------hhHHHhHHHHHHHHH
Q 045900 39 RKKTEVKERVELQLG-------RAEEESRRLAQIWEE 68 (155)
Q Consensus 39 rkKmeVrekV~aqLG-------rvEeetkrLa~ireE 68 (155)
+..|||-.+++.||. |+|+..+.|..|.+.
T Consensus 9 r~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek 45 (51)
T PF14379_consen 9 RMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEK 45 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999999888 788888888888653
No 61
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=34.91 E-value=2.1e+02 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=11.4
Q ss_pred HHHHhhhhcccchhhhHHHhHHHHHH
Q 045900 85 KKIDMANRELKPLGQSIQKKEREYKE 110 (155)
Q Consensus 85 KkID~vnreLKpLg~scqKKEkEYKe 110 (155)
.|++.++.++.-+.+.+...+++|..
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~ 188 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEE 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 62
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=34.62 E-value=96 Score=26.48 Aligned_cols=47 Identities=28% Similarity=0.339 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcc
Q 045900 43 EVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANREL 94 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreL 94 (155)
++|+++...+. .|.=..|++||+.||-.-..+|+..|+.|=.+=|+|
T Consensus 277 ~~~~~il~nmS-----~R~a~~l~eel~~~g~v~~~dve~Aq~~I~~~~r~l 323 (339)
T PRK05686 277 ELREKFLSNMS-----KRAAEMLREDLEALGPVRLSDVEEAQKKIVQIARRL 323 (339)
T ss_pred HHHHHHHHhcC-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 47888888775 244456899999999999999999999997766665
No 63
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.49 E-value=3.6e+02 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=11.3
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhc
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVL 72 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l 72 (155)
.-+...+..++-.-.+|..|.+.|..+
T Consensus 287 ~~l~~~~~~l~~dp~~L~ele~RL~~l 313 (563)
T TIGR00634 287 RELQNYLDELEFDPERLNEIEERLAQI 313 (563)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 333344444443344444444444433
No 64
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=34.09 E-value=34 Score=24.68 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHhhhhcccchhh---hHHHhHHHHHHH
Q 045900 74 DPMRKEVAVVRKKIDMANRELKPLGQ---SIQKKEREYKEA 111 (155)
Q Consensus 74 DP~RKEV~~vRKkID~vnreLKpLg~---scqKKEkEYKea 111 (155)
.++.-++..+|..||.++++|=.|=. .|.+.=-+||..
T Consensus 4 ~~~~~~L~~lR~~Id~iD~~ll~Ll~eR~~l~~~Va~~K~~ 44 (101)
T COG1605 4 TIMMEELEELREEIDEIDRELLDLLAERLELAKEVGEAKAA 44 (101)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777899999999999999865532 344444444444
No 65
>PRK11637 AmiB activator; Provisional
Probab=34.08 E-value=3.2e+02 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHH
Q 045900 76 MRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEA 111 (155)
Q Consensus 76 ~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKea 111 (155)
...++..+..+|+.++.+|..+-..-......|+.-
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444444443
No 66
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=33.29 E-value=29 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhhcccch
Q 045900 78 KEVAVVRKKIDMANRELKPL 97 (155)
Q Consensus 78 KEV~~vRKkID~vnreLKpL 97 (155)
.++..+|+.||.++++|=-|
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L 22 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM 22 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998654
No 67
>PRK01156 chromosome segregation protein; Provisional
Probab=33.13 E-value=4.3e+02 Score=25.00 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhcccchhh
Q 045900 79 EVAVVRKKIDMANRELKPLGQ 99 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpLg~ 99 (155)
+...+.++|...+..+.-++.
T Consensus 364 ~~~~l~~~l~~~~~~~~~~~~ 384 (895)
T PRK01156 364 DYNSYLKSIESLKKKIEEYSK 384 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444433
No 68
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.84 E-value=1.9e+02 Score=20.77 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=17.7
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhcc
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLT 73 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~ 73 (155)
+.++++++.+......+....+.|+.+.
T Consensus 16 ~~l~~~i~~l~~~i~e~~~~~~~L~~l~ 43 (126)
T TIGR00293 16 ESLQAQIAALRALIAELETAIETLEDLK 43 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466666666666666666666666654
No 69
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=32.76 E-value=2.9e+02 Score=22.90 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhhh----HHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhh-hHHHhHHHHHHHHHHh
Q 045900 41 KTEVKERVELQLGRA----EEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQ-SIQKKEREYKEALEAF 115 (155)
Q Consensus 41 KmeVrekV~aqLGrv----EeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~-scqKKEkEYKeaLEaf 115 (155)
-|+.-+.|..+||++ +--.|-++.|+++||+|- +.+.+|-+-...|-+++-|++. +-|--+-+..+.-+--
T Consensus 49 imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe----~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV 124 (157)
T COG3352 49 IMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLE----ENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQV 124 (157)
T ss_pred HHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHH
Confidence 366678889999955 556899999999999874 6788888888999999999874 3343333444444444
Q ss_pred hhhhHHHHHHHH
Q 045900 116 NEKSKEKAQLVT 127 (155)
Q Consensus 116 NEKnkEKa~LV~ 127 (155)
|+---.+++...
T Consensus 125 ~el~~i~emv~~ 136 (157)
T COG3352 125 NELKMIVEMVIK 136 (157)
T ss_pred HHHHHHHHHHhc
Confidence 444444444333
No 70
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=32.72 E-value=3.4e+02 Score=26.61 Aligned_cols=79 Identities=37% Similarity=0.504 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchh
Q 045900 19 DEEMARMAIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLG 98 (155)
Q Consensus 19 ~ee~srsals~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg 98 (155)
...+-..|++.-++.|.+|.--|.|++--+ -|-.+||+-|| |-+++=| .|+-+-
T Consensus 508 iq~llkva~dnar~qekQiq~Ek~ELkmd~-----------lrerelresle-------kql~~Er--------klR~~~ 561 (641)
T KOG3915|consen 508 IQGLLKVAIDNARAQEKQIQLEKTELKMDF-----------LRERELRESLE-------KQLAMER--------KLRAIV 561 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-------HHHHHHH--------HHHHHH
Confidence 457888999999999999988887776432 23455666665 3344333 344444
Q ss_pred hhHHHhHHHH----HHHHHHhhhhhHHHHH
Q 045900 99 QSIQKKEREY----KEALEAFNEKSKEKAQ 124 (155)
Q Consensus 99 ~scqKKEkEY----KeaLEafNEKnkEKa~ 124 (155)
|.-.||||.| ++||+ |+-|-+|+|.
T Consensus 562 qkr~kkEkk~k~k~qe~L~-~~sk~reqae 590 (641)
T KOG3915|consen 562 QKRLKKEKKAKRKLQEALE-FESKRREQAE 590 (641)
T ss_pred HHHHHHHHHHHHHHHHHhh-hccccchhhh
Confidence 5555677654 57776 6778888874
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=32.37 E-value=4.2e+02 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 045900 32 AREEEIERKKTEVKERVELQLGRA 55 (155)
Q Consensus 32 akEeEIErkKmeVrekV~aqLGrv 55 (155)
.+-++++....+++..+....|.+
T Consensus 321 ~k~~el~~~l~~~~~~l~~~~~~~ 344 (880)
T PRK02224 321 DRDEELRDRLEECRVAAQAHNEEA 344 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 72
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.24 E-value=3.9e+02 Score=25.48 Aligned_cols=86 Identities=19% Similarity=0.384 Sum_probs=64.6
Q ss_pred hHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHH--------------hhhhcccchhhhHHHhHHHHHHHHHHhhh--h
Q 045900 55 AEEESRRLAQIWEELEVLTDPMRKEVAVVRKKID--------------MANRELKPLGQSIQKKEREYKEALEAFNE--K 118 (155)
Q Consensus 55 vEeetkrLa~ireELE~l~DP~RKEV~~vRKkID--------------~vnreLKpLg~scqKKEkEYKeaLEafNE--K 118 (155)
++.-..||..+-.+.|..-.|+=.|+...|...+ .+-.+++-+..-|+.||..|+.-...|-. |
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556678888888888888899999999885443 55667777888899999988875554432 2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHH
Q 045900 119 SKEKAQLVTALMELLTESERVR 140 (155)
Q Consensus 119 nkEKa~LV~~LmELv~ESErlR 140 (155)
..-....+.+++|+|+-..+++
T Consensus 483 ~~~Rs~Yt~RIlEIv~NI~KQk 504 (594)
T PF05667_consen 483 DVNRSAYTRRILEIVKNIRKQK 504 (594)
T ss_pred CCCHHHHHHHHHHHHHhHHHHH
Confidence 2345678899999999888776
No 73
>PRK10203 hypothetical protein; Provisional
Probab=31.38 E-value=1.3e+02 Score=23.42 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHH
Q 045900 60 RRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEAL 112 (155)
Q Consensus 60 krLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaL 112 (155)
|-+..+++.|..++|+.- +...++|++-..|--+..++-.+.-.-.+|.+-+
T Consensus 64 KE~~~l~~~l~~~~d~~~-~~~~~~k~L~~l~lr~~~~~~~~~~~~~~Y~~ki 115 (122)
T PRK10203 64 REAIQLLDLLKGIREDDP-QYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKL 115 (122)
T ss_pred HHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 456777888888887732 2235566666666555555555544445666543
No 74
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=31.03 E-value=2.6e+02 Score=21.85 Aligned_cols=74 Identities=24% Similarity=0.400 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhHHHhH-HHHHHHHH-Hhh--ccc--------hhHHHHHHHHHHHHhhhhcccchh-----hhHHHhH
Q 045900 43 EVKERVELQLGRAEEESR-RLAQIWEE-LEV--LTD--------PMRKEVAVVRKKIDMANRELKPLG-----QSIQKKE 105 (155)
Q Consensus 43 eVrekV~aqLGrvEeetk-rLa~ireE-LE~--l~D--------P~RKEV~~vRKkID~vnreLKpLg-----~scqKKE 105 (155)
-|.+||.+.|-++++++. -|..+-+. +.. ..| ..-++|+.+|+|++.. +.++++. ..|..-.
T Consensus 35 ~iq~Rva~eL~~L~~~~~~~~~~~l~~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~-~kl~~~~~~~~~~~v~~aR 113 (142)
T PF07956_consen 35 HIQERVAEELKRLEEEELKKFEEALEKSLLSEDEKDQDPGLSSKSVNEEIEKLREKLEER-KKLRELKEEKNSEEVEKAR 113 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHH-HHHHhccccccchhhHHHH
Confidence 577899999999988873 33333221 211 112 2456777888888743 2232222 2466666
Q ss_pred HHHHHHHHHhhh
Q 045900 106 REYKEALEAFNE 117 (155)
Q Consensus 106 kEYKeaLEafNE 117 (155)
.+.-.||-..+.
T Consensus 114 ~~vv~CL~~N~~ 125 (142)
T PF07956_consen 114 SAVVRCLRENDG 125 (142)
T ss_pred HHHHHHHHHCCC
Confidence 666666654443
No 75
>PRK07248 hypothetical protein; Provisional
Probab=30.47 E-value=29 Score=24.01 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhcccchhh---hHHHhHHHHHHH
Q 045900 80 VAVVRKKIDMANRELKPLGQ---SIQKKEREYKEA 111 (155)
Q Consensus 80 V~~vRKkID~vnreLKpLg~---scqKKEkEYKea 111 (155)
++.+|+.||.++++|-.|=. .|..+=-.||.+
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKA 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999876632 344444555554
No 76
>PRK06285 chorismate mutase; Provisional
Probab=30.05 E-value=34 Score=24.38 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhcccch
Q 045900 77 RKEVAVVRKKIDMANRELKPL 97 (155)
Q Consensus 77 RKEV~~vRKkID~vnreLKpL 97 (155)
.+.+..+|+.||.++++|-.|
T Consensus 6 ~~~L~elR~~ID~ID~~iv~L 26 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDL 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777899999999998765
No 77
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.93 E-value=1.8e+02 Score=19.57 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=17.5
Q ss_pred cchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 045900 95 KPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMEL 132 (155)
Q Consensus 95 KpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmEL 132 (155)
..|...|..+.....+-+..++..-..=..++...-.+
T Consensus 64 ~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 64 EDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544433333333333333
No 78
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.89 E-value=4.6e+02 Score=24.43 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHH
Q 045900 78 KEVAVVRKKIDMANRELKPLGQSIQKKEREYKEA 111 (155)
Q Consensus 78 KEV~~vRKkID~vnreLKpLg~scqKKEkEYKea 111 (155)
+++..+.+.|+.+-.+|+-...+-.+.++...++
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3444455555555555555444444444444433
No 79
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=29.80 E-value=1.6e+02 Score=25.56 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHH----------hhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 045900 76 MRKEVAVVRKKID----------MANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALM 130 (155)
Q Consensus 76 ~RKEV~~vRKkID----------~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~Lm 130 (155)
...|++..++.+. .|-...++......+++.++++-+.+|..++-++++...++|
T Consensus 263 ~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~a~el~~~l 327 (332)
T PF00456_consen 263 TEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEEAQELERRL 327 (332)
T ss_dssp HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 4445777777653 333445566667899999999999999999999999988776
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.74 E-value=3.6e+02 Score=23.11 Aligned_cols=101 Identities=23% Similarity=0.308 Sum_probs=60.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhH---HHHHHHHHHHHhhhhcccchhhhHH
Q 045900 26 AIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMR---KEVAVVRKKIDMANRELKPLGQSIQ 102 (155)
Q Consensus 26 als~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~R---KEV~~vRKkID~vnreLKpLg~scq 102 (155)
+|+.....-..++.+.-+.++-+.+...-.+.--+++..+..+++.|-+--+ .++..+|.||+..-..| +-.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-----~~v 85 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-----SAV 85 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc
Confidence 4556666666667666677777777777777777888888888887755443 35566666666554433 445
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045900 103 KKEREYKEALEAFNEKSKEKAQLVTALME 131 (155)
Q Consensus 103 KKEkEYKeaLEafNEKnkEKa~LV~~LmE 131 (155)
+.+++|..-.-.+-.-+...+.|=..|.+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777654333333333333444333333
No 81
>PHA02109 hypothetical protein
Probab=29.28 E-value=1.3e+02 Score=25.94 Aligned_cols=54 Identities=28% Similarity=0.365 Sum_probs=39.8
Q ss_pred HhHHHHHHH-----HHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHH
Q 045900 58 ESRRLAQIW-----EELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEAL 112 (155)
Q Consensus 58 etkrLa~ir-----eELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaL 112 (155)
-|.|+++.+ +-||||+|.. +++..+--|||.+.+|+-.+..-.|-+-.+.+.-|
T Consensus 169 sTE~ID~~~~~~t~~~L~~~~~~L-~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~L 227 (233)
T PHA02109 169 STERIDQVERSHTGENLEGLTDKL-KQISELTIKLEALSDEACQVKHKILNLRAEVKRRL 227 (233)
T ss_pred cHHHHHHHHhccchhhhhhhhHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666665 4799999986 78999999999999998666666666555555443
No 82
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.02 E-value=5.3e+02 Score=27.34 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 045900 60 RRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTAL 129 (155)
Q Consensus 60 krLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~L 129 (155)
.-|+.|.+.|.- .|+||..+--+||.+|-++.-+...--.=.++|.....+-|-.+.++.++-..+
T Consensus 678 ~~~~~l~~~L~~----~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 678 SELKELQESLDE----VRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 345555555533 567777777777777766665554444444555555555555555555544333
No 83
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=28.79 E-value=3e+02 Score=23.43 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 045900 32 AREEEIERKKTEVKERVELQ 51 (155)
Q Consensus 32 akEeEIErkKmeVrekV~aq 51 (155)
.||+=|.|-++.=-+|+.+.
T Consensus 17 skeel~~rLR~~E~ek~~~m 36 (195)
T PF10226_consen 17 SKEELVRRLRRAEAEKMSLM 36 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45665665555544544443
No 84
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.45 E-value=2.9e+02 Score=21.64 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 045900 78 KEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLT 134 (155)
Q Consensus 78 KEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ 134 (155)
-++..-.|-|+.+|-|+-.|-- +|..+-+.+..-..|=..||.++|..++
T Consensus 137 ~~l~ek~k~~e~l~DE~~~L~l-------~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 137 EELKEKNKANEILQDELQALQL-------QLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777665543 4445555555666777899999998654
No 85
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=28.11 E-value=1e+02 Score=26.01 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhhhhcccc
Q 045900 76 MRKEVAVVRKKIDMANRELKP 96 (155)
Q Consensus 76 ~RKEV~~vRKkID~vnreLKp 96 (155)
+.+++..+|-+|+++|.++-.
T Consensus 110 ~~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 110 IKKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666666655543
No 86
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.07 E-value=2.7e+02 Score=21.11 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHH
Q 045900 79 EVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKE 121 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkE 121 (155)
+...+..+++.++...+++-+.+..=..+-++..+...+....
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 166 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQ 166 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544443333333444333333
No 87
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.84 E-value=99 Score=21.63 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHHhhccc
Q 045900 47 RVELQLGRAEEESRRLAQIWEELEVLTD 74 (155)
Q Consensus 47 kV~aqLGrvEeetkrLa~ireELE~l~D 74 (155)
.+++++..+...-..+....+-|+.|.+
T Consensus 7 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 34 (120)
T PF02996_consen 7 NLQQQIEQLEEQIEEYEEAKETLEELKK 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555555555
No 88
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=26.64 E-value=2.7e+02 Score=23.23 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhhcccchhh------------------hHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 045900 77 RKEVAVVRKKIDMANRELKPLGQ------------------SIQKKEREYKEALEAFNEKSKEKAQLVTALMELLT 134 (155)
Q Consensus 77 RKEV~~vRKkID~vnreLKpLg~------------------scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ 134 (155)
...|..+.+.||..|.++.||-. -|-.-||..=.+.+.++...-- ...+|+|-.|+=
T Consensus 87 ~e~v~~LE~~id~y~~~l~~l~~FiLPGgs~~aA~lh~ARtv~RRAER~~V~l~~~~~~~~~~-l~YlNRLSdlLF 161 (184)
T COG2096 87 EEDVKRLEKRIDAYNAELPPLKSFVLPGGSPAAAALHVARTVARRAERRLVALSREEEANLVV-LKYLNRLSDLLF 161 (184)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHHH
Confidence 57899999999999999998742 3678899988888888877665 788899887753
No 89
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=26.53 E-value=29 Score=23.83 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhcccchhh---hHHHhHHHHHHH
Q 045900 81 AVVRKKIDMANRELKPLGQ---SIQKKEREYKEA 111 (155)
Q Consensus 81 ~~vRKkID~vnreLKpLg~---scqKKEkEYKea 111 (155)
+.+|+.||.++++|-.|=. .|..+=-.||.+
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999877632 344555566654
No 90
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=26.12 E-value=33 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhcccchh-h--hHHHhHHHHHHH
Q 045900 81 AVVRKKIDMANRELKPLG-Q--SIQKKEREYKEA 111 (155)
Q Consensus 81 ~~vRKkID~vnreLKpLg-~--scqKKEkEYKea 111 (155)
..+|..||.++++|=.|= + ...++=-+||.+
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999987653 2 223444556655
No 91
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=25.84 E-value=1.7e+02 Score=25.25 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhHHHhHHH-HHHHHHHhhccchhHHHHHHHHHHHHhhhhcc
Q 045900 43 EVKERVELQLGRAEEESRRL-AQIWEELEVLTDPMRKEVAVVRKKIDMANREL 94 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrL-a~ireELE~l~DP~RKEV~~vRKkID~vnreL 94 (155)
++|++|..-+. +|. ..|++|++.||-.-..+|+..|+.|=.+=|+|
T Consensus 271 e~r~~il~nmS------~Raa~~l~eele~~gpV~~sdvE~Aq~~Iv~~~r~L 317 (334)
T PRK07194 271 ALRQAILRVMP------KRQAQALEAQIERLGPVPLSRVEQARKEIMALVREL 317 (334)
T ss_pred HHHHHHHHHcc------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 46666666553 444 46899999999999999999999997766655
No 92
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=25.78 E-value=30 Score=23.89 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhcccchh-h--hHHHhHHHHHHHHH-HhhhhhHHHHH
Q 045900 81 AVVRKKIDMANRELKPLG-Q--SIQKKEREYKEALE-AFNEKSKEKAQ 124 (155)
Q Consensus 81 ~~vRKkID~vnreLKpLg-~--scqKKEkEYKeaLE-afNEKnkEKa~ 124 (155)
..+|+.||.++++|-.|= + .|..+=-+||.+.- +.....+|+..
T Consensus 2 ~~lR~~ID~ID~~il~Ll~~R~~~~~~ia~~K~~~~~~v~d~~RE~~v 49 (83)
T TIGR01799 2 EDLRGEIDGVDQELLHLLAKRLELVAQVGKVKHAAGLPIYAPEREAAM 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 468999999999987653 2 35555567776532 33334455443
No 93
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=25.47 E-value=41 Score=23.17 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhcccch
Q 045900 81 AVVRKKIDMANRELKPL 97 (155)
Q Consensus 81 ~~vRKkID~vnreLKpL 97 (155)
+.+|++||.++++|=-|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (82)
T TIGR01803 2 ADIREAIDRIDLALVQA 18 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999998654
No 94
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=25.44 E-value=3.7e+02 Score=21.77 Aligned_cols=103 Identities=23% Similarity=0.265 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccc
Q 045900 19 DEEMARMAIATFQAREEEIERK--KTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKP 96 (155)
Q Consensus 19 ~ee~srsals~F~akEeEIErk--KmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKp 96 (155)
+.+-|+.|+..-.+--+-..-+ ..++=. +-|- . + ...--.-|+.+-.-+.+++..+|+.||.||+.=|-
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~----~~g~--n-a--W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~ 168 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLS----KYGE--N-A--WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKR 168 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhH--H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888887776655432221 112211 1111 1 1 11112578888889999999999999999996553
Q ss_pred hhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 045900 97 LGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVR 140 (155)
Q Consensus 97 Lg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlR 140 (155)
-=..+..+=+.+ ...=..+|++-.++-..-..|+
T Consensus 169 ~Q~~~~~~L~~L----------e~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 169 RQEEAGEELRYL----------EQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222222 2233456666666655555554
No 95
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=1.6e+02 Score=26.43 Aligned_cols=69 Identities=30% Similarity=0.471 Sum_probs=50.7
Q ss_pred hhccchh-HHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHH
Q 045900 70 EVLTDPM-RKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESE-RVRMKKLEEL 147 (155)
Q Consensus 70 E~l~DP~-RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESE-rlRmkKLEEL 147 (155)
+.+-||+ +|||. |||+|-. .--||+-++--+|-+||.+--+=+.+|..|...+..++ .-+++..++.
T Consensus 58 q~fED~~vekEv~-iRrri~~----------~~nk~~eeF~~~LaeyndylEe~Ediv~nl~~~~dv~~t~~k~~~ye~~ 126 (300)
T KOG3800|consen 58 QTFEDPTVEKEVD-IRRRILR----------IFNKKEEEFTGSLAEYNDYLEEVEDIVFNLGNNIDVTETKEKVKTYEEP 126 (300)
T ss_pred hhcchhHHHHHHH-HHHHHHH----------HhccchhhhhhhHHHHhcccHHHHHHHHHhhcccchhHHHHHHHHhhcc
Confidence 3577887 67876 5666632 34578999999999999999999999999988776654 3455555555
Q ss_pred Hh
Q 045900 148 SK 149 (155)
Q Consensus 148 sk 149 (155)
++
T Consensus 127 nk 128 (300)
T KOG3800|consen 127 NK 128 (300)
T ss_pred Cc
Confidence 44
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.27 E-value=4.2e+02 Score=22.40 Aligned_cols=86 Identities=26% Similarity=0.354 Sum_probs=63.2
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHH---HHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHH
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRK---KIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEK 122 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRK---kID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEK 122 (155)
-++++.+--+|+.+.+|+. |++.| |+..-+..+ +-++|+.+|..|-.+|-.=|-+|.-.+..--.-++|.
T Consensus 25 ~kL~~~ve~~ee~na~L~~---e~~~L----~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAE---EITDL----RKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888999888874 44433 333334433 3466799999999999999999999888777788999
Q ss_pred HHHHHHHHHHhhHHHH
Q 045900 123 AQLVTALMELLTESER 138 (155)
Q Consensus 123 a~LV~~LmELv~ESEr 138 (155)
-+||..+-.|=-|..+
T Consensus 98 q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 98 QSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999887665544443
No 97
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=25.07 E-value=34 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhcccch
Q 045900 79 EVAVVRKKIDMANRELKPL 97 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpL 97 (155)
|+..+|..||.++++|--|
T Consensus 1 ~l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILAL 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998655
No 98
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.47 E-value=7.2e+02 Score=24.87 Aligned_cols=16 Identities=13% Similarity=0.354 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhhc
Q 045900 78 KEVAVVRKKIDMANRE 93 (155)
Q Consensus 78 KEV~~vRKkID~vnre 93 (155)
.+++.++.+++.+..+
T Consensus 828 ~ei~~l~~~~~~~~~~ 843 (1163)
T COG1196 828 QEIEELEEEIEELEEK 843 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444433333333
No 99
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.52 E-value=6.9e+02 Score=24.31 Aligned_cols=95 Identities=27% Similarity=0.395 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHH----HHHHHHHH
Q 045900 21 EMARMAIATFQAR--------EEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEV----AVVRKKID 88 (155)
Q Consensus 21 e~srsals~F~ak--------EeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV----~~vRKkID 88 (155)
++--.|...|+.. -++|+++---.....+.||..+.+-..+...|++--+.|+|- -.++ +.+.+|+|
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR-~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER-YEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5555677788732 223333333333344445555544444555555555555652 1222 34566666
Q ss_pred hh----hhcccchhhhHHHhHHHHHHHHHHhhhhhH
Q 045900 89 MA----NRELKPLGQSIQKKEREYKEALEAFNEKSK 120 (155)
Q Consensus 89 ~v----nreLKpLg~scqKKEkEYKeaLEafNEKnk 120 (155)
.+ |..+.+|. .-|+++++=|+.++++-+
T Consensus 618 ~vl~~l~~~~P~LS----~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 618 RVLQLLNSQLPVLS----EAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHhccCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 54 33333333 359999999999998753
No 100
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.51 E-value=9.4e+02 Score=25.85 Aligned_cols=120 Identities=22% Similarity=0.349 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHH---HhhhhHHHhHHHHHHHH-------HHhhccchhHHHHH
Q 045900 19 DEEMARMAIATFQAREE-------EIERKKTEVKERVEL---QLGRAEEESRRLAQIWE-------ELEVLTDPMRKEVA 81 (155)
Q Consensus 19 ~ee~srsals~F~akEe-------EIErkKmeVrekV~a---qLGrvEeetkrLa~ire-------ELE~l~DP~RKEV~ 81 (155)
+.+-...||+.-.-.-+ +.+-.--+.|+++.. +|-++.-+++|++..-+ ++|...++..-+
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d-- 856 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVD-- 856 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--
Confidence 44555666665433222 334444455665543 45667777888887444 333333332222
Q ss_pred HHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 045900 82 VVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSK--EKAQLVTALMELLTESERVRMKKLEELSKSIE 152 (155)
Q Consensus 82 ~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnk--EKa~LV~~LmELv~ESErlRmkKLEELsk~ie 152 (155)
++.|+-+-.....-++||.++- ++..| ...+|-++++++-++.=+.--.|++.++..|+
T Consensus 857 ---------~~~l~~~~~~ie~l~kE~e~~q---e~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~ 917 (1293)
T KOG0996|consen 857 ---------KKRLKELEEQIEELKKEVEELQ---EKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLD 917 (1293)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHH
Confidence 2333333333444455554443 23333 23456677777777766555556666655554
No 101
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=23.37 E-value=51 Score=29.18 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHhhhhccc
Q 045900 76 MRKEVAVVRKKIDMANRELK 95 (155)
Q Consensus 76 ~RKEV~~vRKkID~vnreLK 95 (155)
+.++++.+|+.||.++++|=
T Consensus 3 ~~~~L~~lR~~ID~ID~~ii 22 (386)
T PRK10622 3 SENPLLALREKISALDEKLL 22 (386)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 45677888888888888864
No 102
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=23.33 E-value=2.5e+02 Score=19.13 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHh---hc-cchhHHHHHHHHHHHHhhhhcccc
Q 045900 23 ARMAIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELE---VL-TDPMRKEVAVVRKKIDMANRELKP 96 (155)
Q Consensus 23 srsals~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE---~l-~DP~RKEV~~vRKkID~vnreLKp 96 (155)
+..-+++|...=+.+...=-+++..=..-+..++.+...|..+.+-.. .| -+|-..=+..+||++..+|.-+.-
T Consensus 5 a~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~ 82 (92)
T PF14712_consen 5 AEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQK 82 (92)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555554444444444554444446788888888888877322 22 355666777888888888765543
No 103
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=23.13 E-value=49 Score=30.65 Aligned_cols=41 Identities=32% Similarity=0.306 Sum_probs=28.8
Q ss_pred hccch-----hHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHH
Q 045900 71 VLTDP-----MRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEA 111 (155)
Q Consensus 71 ~l~DP-----~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKea 111 (155)
.|+|| +|-||..||.+=|-+-.-=+-|-..|.-.|.|.|..
T Consensus 293 SmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai 338 (394)
T KOG0225|consen 293 SMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAI 338 (394)
T ss_pred ccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHH
Confidence 58999 799999999776655444344555666777777643
No 104
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.93 E-value=1.7e+02 Score=23.48 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=20.4
Q ss_pred HHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHH
Q 045900 67 EELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREY 108 (155)
Q Consensus 67 eELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEY 108 (155)
+++=..++-.|+|+..+++-++.|..++.-.-.-|-+=++.|
T Consensus 16 ~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~e 57 (159)
T PF05384_consen 16 EQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRE 57 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544444444433333
No 105
>PRK11032 hypothetical protein; Provisional
Probab=22.77 E-value=1.9e+02 Score=23.34 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhhHHHhHHH-HHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhH
Q 045900 44 VKERVELQLGRAEEESRRL-AQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSI 101 (155)
Q Consensus 44 VrekV~aqLGrvEeetkrL-a~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~sc 101 (155)
+=++|...|...+++.+.+ ...++=+...+|=++.|++-|. +-|.|+|+-++++-
T Consensus 11 ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~---~ylkRDL~ef~~~~ 66 (160)
T PRK11032 11 LVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLIT---RAVRRDLEEFARSY 66 (160)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3467777888888766665 5667777788888999999886 56788888887754
No 106
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.71 E-value=2.8e+02 Score=19.40 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHHhhcc
Q 045900 47 RVELQLGRAEEESRRLAQIWEELEVLT 73 (155)
Q Consensus 47 kV~aqLGrvEeetkrLa~ireELE~l~ 73 (155)
.+++++..+......+....++|+.+.
T Consensus 17 ~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 17 ALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666777777777765
No 107
>PRK09239 chorismate mutase; Provisional
Probab=22.62 E-value=57 Score=24.05 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhcccch-hh--hHHHhHHHHHHH
Q 045900 79 EVAVVRKKIDMANRELKPL-GQ--SIQKKEREYKEA 111 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpL-g~--scqKKEkEYKea 111 (155)
.+..+|+.||.++++|=.| ++ .|.++=-+||-+
T Consensus 11 ~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~ 46 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAE 46 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677999999999998654 32 234444555543
No 108
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.37 E-value=1e+03 Score=25.73 Aligned_cols=99 Identities=25% Similarity=0.319 Sum_probs=52.5
Q ss_pred hhHHHhHHHHHHHHHHhhccchhH--------HHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhh-------
Q 045900 54 RAEEESRRLAQIWEELEVLTDPMR--------KEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEK------- 118 (155)
Q Consensus 54 rvEeetkrLa~ireELE~l~DP~R--------KEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEK------- 118 (155)
..|+..|-|.++.+.|..-.+-.. .+...+--+....+.+++-|.--.+.++++.+.| ..+|..
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEK 540 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 444555555555554433333333 2222333344444445555555556666676666 555543
Q ss_pred -hHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHhhhhh
Q 045900 119 -SKEKAQLVTALMELLTESER--VRMKKLEELSKSIES 153 (155)
Q Consensus 119 -nkEKa~LV~~LmELv~ESEr--lRmkKLEELsk~ies 153 (155)
+...++|....-++++|++. -.-+...++++.|.+
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~ 578 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQ 578 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHH
Confidence 35566777777778877763 223345566666654
No 109
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=22.13 E-value=39 Score=23.06 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhcccchhh---hHHHhHHHHHHH
Q 045900 81 AVVRKKIDMANRELKPLGQ---SIQKKEREYKEA 111 (155)
Q Consensus 81 ~~vRKkID~vnreLKpLg~---scqKKEkEYKea 111 (155)
+.+|+.||.++++|-.|=. .|.++=-+||.+
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~ 35 (83)
T TIGR01791 2 EELRQEIEEIDKSILDLIEKRIKIARKIGEIKHN 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999877632 344555566654
No 110
>PHA01750 hypothetical protein
Probab=21.96 E-value=62 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHhhhhcccchhhh
Q 045900 74 DPMRKEVAVVRKKIDMANRELKPLGQS 100 (155)
Q Consensus 74 DP~RKEV~~vRKkID~vnreLKpLg~s 100 (155)
|..|+|+..+.+|+|.+-++++.+..-
T Consensus 45 dNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 45 DNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 456788888888888877766655443
No 111
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.94 E-value=5.8e+02 Score=22.88 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhH
Q 045900 108 YKEALEAFNEKSKEKAQLVTALMELLTE 135 (155)
Q Consensus 108 YKeaLEafNEKnkEKa~LV~~LmELv~E 135 (155)
|-++-+-|.|--+||..|+..|-+|-++
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555444444443
No 112
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.90 E-value=58 Score=28.62 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhhhhcccch
Q 045900 76 MRKEVAVVRKKIDMANRELKPL 97 (155)
Q Consensus 76 ~RKEV~~vRKkID~vnreLKpL 97 (155)
|..++..+|+.||.++++|=-|
T Consensus 2 ~~~~L~~lR~~ID~ID~eIl~L 23 (360)
T PRK12595 2 MNEELEQLRKEIDEINLQLLEL 23 (360)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888887544
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.55 E-value=3.3e+02 Score=22.04 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=60.8
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhh---hcccchhhhHHHhHHHHHHHHHHhhh-----
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMAN---RELKPLGQSIQKKEREYKEALEAFNE----- 117 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vn---reLKpLg~scqKKEkEYKeaLEafNE----- 117 (155)
....+.+..+..+...|....+.|+..-+-.+++++.+...|+.+. ++|.|+-.. +-+.|+.|-+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~-------m~~~L~~~v~~d~Pf 124 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ-------MIDELEQFVELDLPF 124 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCCC
Confidence 4456667778888888888899999999999999999998887764 677777543 3344555544
Q ss_pred hhHHHHHHHHHHHHH-----hhHHHHHHH
Q 045900 118 KSKEKAQLVTALMEL-----LTESERVRM 141 (155)
Q Consensus 118 KnkEKa~LV~~LmEL-----v~ESErlRm 141 (155)
.--|...-|..|-.+ |+-+|+.|-
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~ 153 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDADVSLAEKFRR 153 (251)
T ss_pred ChHHHHHHHHHHHHhhhccCCCHHHHHHH
Confidence 223444455555554 455666663
No 114
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=21.27 E-value=4.7e+02 Score=21.49 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=37.9
Q ss_pred HHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 045900 87 IDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEE 146 (155)
Q Consensus 87 ID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLEE 146 (155)
++.+...+.-..+++.+-+.+|..+|..+|.-+..=-+-+....+.+-+=|.-|+.-|-+
T Consensus 170 leK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~ 229 (258)
T cd07655 170 VKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKE 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556788889999999999999988533334444444555555555554443
No 115
>PF15275 PEHE: PEHE domain; PDB: 2Y0N_G 2Y0M_B.
Probab=21.15 E-value=2.1e+02 Score=21.46 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045900 18 EDEEMARMAIATFQAREEEIERKKTEVKER 47 (155)
Q Consensus 18 ~~ee~srsals~F~akEeEIErkKmeVrek 47 (155)
+.|.+|-.|+..=++|=|+.||++-.+...
T Consensus 23 e~EdlSDe~f~~RH~k~Ee~ERkRw~~~~~ 52 (123)
T PF15275_consen 23 EVEDLSDEAFLKRHEKYEERERKRWDWQRI 52 (123)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 368999999999999999999998766443
No 116
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=21.03 E-value=4.8e+02 Score=21.57 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHhHHHHHHHHHHhhccchh--HHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhH
Q 045900 56 EEESRRLAQIWEELEVLTDPM--RKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSK 120 (155)
Q Consensus 56 EeetkrLa~ireELE~l~DP~--RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnk 120 (155)
+...+......+.+.. +||+ -||+.-++-|++... ++-++-..+|..+++.+|+-+.
T Consensus 131 e~~Cke~~~a~~~~~~-~~~~~~~ke~~K~~~Kl~K~~-------~~~~k~~~~Y~~~v~~l~~~~~ 189 (240)
T cd07672 131 EQKCRDKDEAEQAVNR-NANLVNVKQQEKLFAKLAQSK-------QNAEDADRLYMQNISVLDKIRE 189 (240)
T ss_pred HHHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333443443 4544 677777777766554 5567788999999999887643
No 117
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=20.65 E-value=48 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhcccch
Q 045900 81 AVVRKKIDMANRELKPL 97 (155)
Q Consensus 81 ~~vRKkID~vnreLKpL 97 (155)
+.+|+.||.++++|=-|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (83)
T TIGR01797 2 LALREKISAIDEKLLKL 18 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45899999999998644
No 118
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.42 E-value=3.2e+02 Score=22.67 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHH
Q 045900 56 EEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQK 103 (155)
Q Consensus 56 EeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqK 103 (155)
+.-..++..|.+.+-.=.+|.++++..+|+.+-.+.+-+.|+...+.+
T Consensus 160 ~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~ 207 (324)
T PRK09546 160 EELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFAR 207 (324)
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444442212367889999999999999999998877754
No 119
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=87 Score=29.95 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.3
Q ss_pred hhhHHHhHHHHHHHHHHhhccchhHH
Q 045900 53 GRAEEESRRLAQIWEELEVLTDPMRK 78 (155)
Q Consensus 53 GrvEeetkrLa~ireELE~l~DP~RK 78 (155)
-|+|+.|.+.+.|+.--++|+||--+
T Consensus 43 d~ieeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 43 DRIEEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcChHhh
Confidence 57999999999999999999999644
No 120
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.29 E-value=55 Score=28.16 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhhhcccchhh---hHHHhHHHHHHH
Q 045900 76 MRKEVAVVRKKIDMANRELKPLGQ---SIQKKEREYKEA 111 (155)
Q Consensus 76 ~RKEV~~vRKkID~vnreLKpLg~---scqKKEkEYKea 111 (155)
|...+..+|+.||.++++|-.|=. .|.++=-+||..
T Consensus 1 ~~~~L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~ 39 (374)
T PRK11199 1 MVAELTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSR 39 (374)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999876532 344444556654
No 121
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=20.27 E-value=2.5e+02 Score=22.68 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=46.8
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHh
Q 045900 62 LAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAF 115 (155)
Q Consensus 62 La~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEaf 115 (155)
|..+|+-+-.+++-|.-||..+-=..+.+|+-+..|...-.|++.+.+.....+
T Consensus 64 l~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~l 117 (138)
T PF03954_consen 64 LRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTL 117 (138)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHH
Confidence 455666777789999999999999999999999999999999999999865443
Done!