Query 045900
Match_columns 155
No_of_seqs 33 out of 35
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 11:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 88.0 10 0.00036 31.4 12.5 24 67-90 491-514 (597)
2 1fio_A SSO1 protein; four heli 82.6 12 0.0004 27.3 11.0 27 65-91 47-73 (196)
3 3oja_B Anopheles plasmodium-re 77.7 5 0.00017 33.3 6.2 35 89-123 506-540 (597)
4 2dfs_A Myosin-5A; myosin-V, in 71.6 11 0.00036 36.0 7.5 72 54-125 936-1010(1080)
5 3uul_A Utrophin; spectrin repe 70.4 19 0.00064 23.3 8.1 79 22-115 37-115 (118)
6 1ecm_A Endo-oxabicyclic transi 69.2 1.7 5.9E-05 30.1 1.3 38 72-111 1-41 (109)
7 3uun_A Dystrophin; triple heli 60.8 30 0.001 22.1 8.0 43 73-115 73-115 (119)
8 3vkg_A Dynein heavy chain, cyt 59.0 1.3E+02 0.0043 32.6 13.0 54 74-127 2010-2063(3245)
9 2eqb_B RAB guanine nucleotide 58.3 43 0.0015 24.4 7.0 66 75-147 2-67 (97)
10 1ez3_A Syntaxin-1A; three heli 57.1 42 0.0015 22.7 8.6 29 64-92 47-75 (127)
11 3oja_A Leucine-rich immune mol 55.6 83 0.0028 25.6 11.6 56 35-90 377-447 (487)
12 2zqm_A Prefoldin beta subunit 48.9 57 0.002 21.8 8.5 67 47-113 24-105 (117)
13 3haj_A Human pacsin2 F-BAR; pa 48.2 1.2E+02 0.0042 25.4 12.6 62 77-145 184-245 (486)
14 2eqb_B RAB guanine nucleotide 47.7 78 0.0027 23.0 7.2 27 96-122 2-28 (97)
15 4dzo_A Mitotic spindle assembl 47.4 18 0.00063 26.5 3.6 36 78-113 4-39 (123)
16 3pkr_A FLIG, flagellar motor s 45.3 23 0.00079 29.1 4.3 51 43-98 217-267 (279)
17 1sum_B Phosphate transport sys 45.0 91 0.0031 23.0 10.7 98 32-133 47-155 (235)
18 4fhr_B Flagellar motor switch 44.6 25 0.00087 27.5 4.3 48 43-95 160-207 (216)
19 3pe0_A Plectin; cytoskeleton, 43.9 1.1E+02 0.0037 24.2 7.9 52 61-115 66-117 (283)
20 3na7_A HP0958; flagellar bioge 43.6 1.1E+02 0.0038 23.6 8.3 9 132-140 177-185 (256)
21 3na7_A HP0958; flagellar bioge 40.7 1.3E+02 0.0043 23.4 16.6 71 59-129 73-148 (256)
22 2ke4_A CDC42-interacting prote 38.7 83 0.0028 22.3 5.8 50 46-95 18-79 (98)
23 2dfs_A Myosin-5A; myosin-V, in 38.4 2.3E+02 0.0079 27.0 10.3 26 77-102 990-1015(1080)
24 3euj_A Chromosome partition pr 38.0 15 0.00052 31.9 2.2 47 55-101 232-286 (483)
25 3hjl_A Flagellar motor switch 37.2 36 0.0012 28.4 4.3 48 43-95 273-320 (329)
26 4etp_A Kinesin-like protein KA 37.2 58 0.002 27.5 5.6 52 81-132 6-57 (403)
27 1i84_S Smooth muscle myosin he 37.1 1.3E+02 0.0044 28.4 8.3 12 86-97 879-890 (1184)
28 2d8d_A Aroag, phospho-2-dehydr 37.0 13 0.00044 24.8 1.3 52 79-131 4-59 (90)
29 3rmi_A Chorismate mutase prote 36.7 17 0.00058 25.9 1.9 40 72-111 5-48 (114)
30 2w83_C C-JUN-amino-terminal ki 36.4 1.1E+02 0.0039 21.6 6.2 43 98-140 8-50 (77)
31 2efk_A CDC42-interacting prote 36.3 1.3E+02 0.0046 22.5 14.9 21 98-118 178-198 (301)
32 2vkl_A RV0948C/MT0975; helical 30.5 16 0.00054 25.1 0.9 57 75-132 9-69 (90)
33 2i0m_A Phosphate transport sys 30.1 1.5E+02 0.0052 21.2 10.5 96 32-131 47-153 (216)
34 2gtv_X CM, chorismate mutase; 30.0 36 0.0012 24.2 2.7 46 79-124 4-61 (104)
35 3iv1_A Tumor susceptibility ge 29.8 91 0.0031 21.8 4.7 58 44-112 12-76 (78)
36 3lbx_A Spectrin alpha chain, e 29.5 1.1E+02 0.0039 21.7 5.4 48 62-112 114-161 (161)
37 1s94_A S-syntaxin; three helix 28.5 1.7E+02 0.0058 21.2 8.8 31 63-93 77-107 (180)
38 1t72_A Phosphate transport sys 28.5 1.6E+02 0.0056 21.1 12.1 97 32-131 51-157 (227)
39 1jzp_A Skeletal dihydropydrine 27.9 34 0.0012 19.9 1.9 15 29-43 3-17 (26)
40 3aco_A Pacsin2, protein kinase 27.9 2.2E+02 0.0075 22.3 7.6 57 78-144 192-251 (350)
41 1s94_A S-syntaxin; three helix 27.1 1.8E+02 0.0061 21.1 9.4 89 47-139 47-145 (180)
42 2ccy_A Cytochrome C; electron 26.1 47 0.0016 23.4 2.8 44 59-102 68-119 (128)
43 2efl_A Formin-binding protein 25.9 2.1E+02 0.007 21.3 14.9 47 98-144 185-232 (305)
44 1fxk_A Prefoldin; archaeal pro 25.4 1.5E+02 0.005 19.5 8.5 65 47-111 19-98 (107)
45 1go4_E MAD1 (mitotic arrest de 25.4 40 0.0014 24.5 2.3 22 76-97 10-31 (100)
46 1ybz_A Chorismate mutase; cons 24.7 27 0.00092 24.1 1.2 47 79-125 18-68 (91)
47 3ljc_A ATP-dependent protease 24.4 2.2E+02 0.0075 21.6 6.5 42 29-70 205-249 (252)
48 1quu_A Human skeletal muscle a 24.0 2.2E+02 0.0074 21.0 7.9 52 61-115 73-124 (250)
49 3oja_A Leucine-rich immune mol 23.6 2.6E+02 0.0088 22.7 7.0 39 32-70 360-398 (487)
50 3m3w_A Pacsin3, protein kinase 23.5 1.9E+02 0.0064 22.9 6.1 52 94-145 192-243 (320)
51 1ez3_A Syntaxin-1A; three heli 21.9 1.9E+02 0.0064 19.4 9.5 62 48-113 17-78 (127)
52 1q08_A Zn(II)-responsive regul 20.8 1.5E+02 0.0051 19.0 4.2 30 43-72 39-68 (99)
53 3u06_A Protein claret segregat 20.2 1.8E+02 0.0063 24.6 5.7 52 74-132 6-57 (412)
54 3ret_A Salicylate biosynthesis 20.1 42 0.0014 22.9 1.5 19 79-97 9-27 (101)
55 3htk_A Structural maintenance 20.1 1.6E+02 0.0054 17.9 6.3 45 95-139 1-45 (60)
56 3r6n_A Desmoplakin; spectrin r 20.0 2.7E+02 0.0094 23.8 6.8 44 69-115 159-202 (450)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.97 E-value=10 Score=31.37 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=9.9
Q ss_pred HHHhhccchhHHHHHHHHHHHHhh
Q 045900 67 EELEVLTDPMRKEVAVVRKKIDMA 90 (155)
Q Consensus 67 eELE~l~DP~RKEV~~vRKkID~v 90 (155)
+.+....|.+.+....+.+-+..+
T Consensus 491 ~~~~~~~~~~~~~~~~l~~~~~~~ 514 (597)
T 3oja_B 491 RRYRLPKDGLARSSDNLNKVFTHL 514 (597)
T ss_dssp HHTTCCCCSSSCHHHHHHHHHHHH
T ss_pred hhcCccccccCCHHHHHHHHHHHH
Confidence 333444444444444444443333
No 2
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=82.61 E-value=12 Score=27.25 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHhhh
Q 045900 65 IWEELEVLTDPMRKEVAVVRKKIDMAN 91 (155)
Q Consensus 65 ireELE~l~DP~RKEV~~vRKkID~vn 91 (155)
++++|+.+.+-+.+=+..++++|..+.
T Consensus 47 ~~~~i~~l~~~i~~~~~~~~~~lk~l~ 73 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQFKLKNEIKSAQ 73 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544443
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.70 E-value=5 Score=33.27 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=14.1
Q ss_pred hhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHH
Q 045900 89 MANRELKPLGQSIQKKEREYKEALEAFNEKSKEKA 123 (155)
Q Consensus 89 ~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa 123 (155)
.+.++++-+.+-=+..++++.....++++++.+..
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 33333333333344444444444444444433333
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.62 E-value=11 Score=35.97 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=26.8
Q ss_pred hhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhh---cccchhhhHHHhHHHHHHHHHHhhhhhHHHHHH
Q 045900 54 RAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANR---ELKPLGQSIQKKEREYKEALEAFNEKSKEKAQL 125 (155)
Q Consensus 54 rvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnr---eLKpLg~scqKKEkEYKeaLEafNEKnkEKa~L 125 (155)
|++++.++...+.+.+..+.++.-+|++.+++.++.+.. ++.-+-......+.+..+.-+.|..-++||-.|
T Consensus 936 rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555556666677766665554433 222222333333444444444444444444443
No 5
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=70.40 E-value=19 Score=23.26 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhH
Q 045900 22 MARMAIATFQAREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSI 101 (155)
Q Consensus 22 ~srsals~F~akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~sc 101 (155)
.-..-+..+++-+.+|...+-.|.. |-.... .|=.-+.|.-.+...|+.+++.+|..-.-|...|
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~--------v~~~g~-------~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 101 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGS--------VLQAGN-------QLMTQGTLSDEEEFEIQEQMTLLNARWEALRVES 101 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-------HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-------HHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666655443322 111122 2222345666678899999999999999999999
Q ss_pred HHhHHHHHHHHHHh
Q 045900 102 QKKEREYKEALEAF 115 (155)
Q Consensus 102 qKKEkEYKeaLEaf 115 (155)
..+.....+||..+
T Consensus 102 ~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 102 MERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 6
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=69.23 E-value=1.7 Score=30.12 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=24.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhcccchhh---hHHHhHHHHHHH
Q 045900 72 LTDPMRKEVAVVRKKIDMANRELKPLGQ---SIQKKEREYKEA 111 (155)
Q Consensus 72 l~DP~RKEV~~vRKkID~vnreLKpLg~---scqKKEkEYKea 111 (155)
|+|| ..+..+|+.||.++++|--|=. .|.++=-+||..
T Consensus 1 M~~~--~~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 1 MTSE--NPLLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5676 3588999999999999876542 455555566643
No 7
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=60.76 E-value=30 Score=22.13 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHh
Q 045900 73 TDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAF 115 (155)
Q Consensus 73 ~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEaf 115 (155)
+.|.--+...|+.+++.+|....-|...|..+.....+||..+
T Consensus 73 ~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 73 GKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDL 115 (119)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456678999999999999999999999999999998764
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.97 E-value=1.3e+02 Score=32.65 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHH
Q 045900 74 DPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVT 127 (155)
Q Consensus 74 DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~ 127 (155)
.|.|.+++..-+..+.++.+|.-.-...+.-+.....--+.|++...||..|-.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999988888888888777666666666666666667777777766544
No 9
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.31 E-value=43 Score=24.37 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045900 75 PMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLEEL 147 (155)
Q Consensus 75 P~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLEEL 147 (155)
|.+++.+..|-.|+.+-.+++- .+.+|+.....+.+-..-+...-...-.+-.|=|=|--.-++|-
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~-------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSD-------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666554 45555555555555544444443333333333333333333333
No 10
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=57.07 E-value=42 Score=22.72 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=15.3
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHhhhh
Q 045900 64 QIWEELEVLTDPMRKEVAVVRKKIDMANR 92 (155)
Q Consensus 64 ~ireELE~l~DP~RKEV~~vRKkID~vnr 92 (155)
.++++|+.+.+-..+=...|+.+|..+.+
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555443
No 11
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.57 E-value=83 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH---------------HhHHHHHHHHHHhhccchhHHHHHHHHHHHHhh
Q 045900 35 EEIERKKTEVKERVELQLGRAEE---------------ESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMA 90 (155)
Q Consensus 35 eEIErkKmeVrekV~aqLGrvEe---------------etkrLa~ireELE~l~DP~RKEV~~vRKkID~v 90 (155)
+.+.+..-+.+..++.+.+++|. -.++...+..+++..=+-+++++...+..|+..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 377 SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 34445556667777777777773 344455556666666666777777777666544
No 12
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.85 E-value=57 Score=21.81 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=46.2
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHHhhccch---------------hHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHH
Q 045900 47 RVELQLGRAEEESRRLAQIWEELEVLTDP---------------MRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEA 111 (155)
Q Consensus 47 kV~aqLGrvEeetkrLa~ireELE~l~DP---------------~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKea 111 (155)
.+..++..++.+-+.+...-+||+.+.|. .-.=+..|-++++.+...++-|-......++++.+.
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888899999988652 223345566777777777777766666666666554
Q ss_pred HH
Q 045900 112 LE 113 (155)
Q Consensus 112 LE 113 (155)
-.
T Consensus 104 k~ 105 (117)
T 2zqm_A 104 TA 105 (117)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 13
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=48.22 E-value=1.2e+02 Score=25.41 Aligned_cols=62 Identities=15% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045900 77 RKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLE 145 (155)
Q Consensus 77 RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLE 145 (155)
.|++.-++.|.+.+ -+.|++-+.+|+.++.+||.-+..=...+..+++-+-.=|..|+..|-
T Consensus 184 ~k~~eK~~~k~~k~-------~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK 245 (486)
T 3haj_A 184 PEQLKKLQDKIEKC-------KQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFR 245 (486)
T ss_dssp SHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665554 455788899999999999988655444444555555555666666664
No 14
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.69 E-value=78 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=8.9
Q ss_pred chhhhHHHhHHHHHHHHHHhhhhhHHH
Q 045900 96 PLGQSIQKKEREYKEALEAFNEKSKEK 122 (155)
Q Consensus 96 pLg~scqKKEkEYKeaLEafNEKnkEK 122 (155)
|||+.|-+---+|..+-..+.....+.
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~ 28 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEV 28 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333333333333333333333333333
No 15
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=47.44 E-value=18 Score=26.49 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHH
Q 045900 78 KEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALE 113 (155)
Q Consensus 78 KEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLE 113 (155)
+||+.+++.|.++|+-..-|.+--.+|=.||.+|.-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998888777777777777777776653
No 16
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=45.33 E-value=23 Score=29.09 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchh
Q 045900 43 EVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLG 98 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg 98 (155)
++|++++.-+.. |.=..|++|++.||-.-.++|+..|++|=.+=|.|--=|
T Consensus 217 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~e~G 267 (279)
T 3pkr_A 217 DLTDKFLNNMSS-----RAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKG 267 (279)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 678999888752 344568999999999899999999999988777665444
No 17
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=44.97 E-value=91 Score=22.98 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh---hHHHhHHHH---HHHHHHhhccchhHHHHHH-HHHHHHh----hhhcccchhhh
Q 045900 32 AREEEIERKKTEVKERVELQLGR---AEEESRRLA---QIWEELEVLTDPMRKEVAV-VRKKIDM----ANRELKPLGQS 100 (155)
Q Consensus 32 akEeEIErkKmeVrekV~aqLGr---vEeetkrLa---~ireELE~l~DP~RKEV~~-vRKkID~----vnreLKpLg~s 100 (155)
..+++|-+...++.+.+..-|.+ +....+++. .|--.||.+||-... ++. +++..+. .-.+|.+++..
T Consensus 47 ~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m~~~ 125 (235)
T 1sum_B 47 ADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHD-IAKNVLELMEEPPLKPLEDIPAMANQ 125 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCCCSCCSHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHH
Confidence 45677777788888877644333 345555543 455699999999876 544 3333322 22345555555
Q ss_pred HHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 045900 101 IQKKEREYKEALEAFNEKSKEKAQLVTALMELL 133 (155)
Q Consensus 101 cqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv 133 (155)
|. .-++.|++||...+.+.|.-|-..-+-+
T Consensus 126 v~---~~l~~a~~a~~~~d~~~A~~v~~~d~~i 155 (235)
T 1sum_B 126 TS---EMLKFALRMFADVNVEKSFEVCRMDSKV 155 (235)
T ss_dssp HH---HHHHHHHHHHHSCCHHHHTHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 54 5789999999999988886655544433
No 18
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=44.62 E-value=25 Score=27.50 Aligned_cols=48 Identities=29% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhccc
Q 045900 43 EVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELK 95 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLK 95 (155)
++|++++.-+. .|.=+.|++|++.+|---.++|...||.|=.+=|.|-
T Consensus 160 e~~e~il~nmS-----~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L~ 207 (216)
T 4fhr_B 160 ELKEKIFKNMS-----KRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLE 207 (216)
T ss_dssp HHHHHHHTTSC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57888887775 2344578999999997777999999999966656553
No 19
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=43.94 E-value=1.1e+02 Score=24.21 Aligned_cols=52 Identities=17% Similarity=0.018 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHh
Q 045900 61 RLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAF 115 (155)
Q Consensus 61 rLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEaf 115 (155)
.+..+=++|-..+.|. ...|+.|++.++..-.-|.+.|...+.-+++|++++
T Consensus 66 ~v~~~g~~L~~~~hp~---~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 117 (283)
T 3pe0_A 66 ELQNAGDRLLREDHPA---RPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYF 117 (283)
T ss_dssp HHHHHHHHHHHSCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666667776 456889999999999999999999999999988764
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.64 E-value=1.1e+02 Score=23.65 Aligned_cols=9 Identities=33% Similarity=0.541 Sum_probs=3.6
Q ss_pred HhhHHHHHH
Q 045900 132 LLTESERVR 140 (155)
Q Consensus 132 Lv~ESErlR 140 (155)
|++.=+|+|
T Consensus 177 lL~~Yerir 185 (256)
T 3na7_A 177 IYSFYERIR 185 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334443
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.67 E-value=1.3e+02 Score=23.36 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhhccch-----hHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 045900 59 SRRLAQIWEELEVLTDP-----MRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTAL 129 (155)
Q Consensus 59 tkrLa~ireELE~l~DP-----~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~L 129 (155)
..|++....-|..-.+| +-+|+....++|...+.++..+......++.++.++-+.+.+...+=..+...+
T Consensus 73 ~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 73 NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444443 568888888888888888888888888887777776666665554443333333
No 22
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=38.66 E-value=83 Score=22.29 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=33.6
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHh----------hccchhH--HHHHHHHHHHHhhhhccc
Q 045900 46 ERVELQLGRAEEESRRLAQIWEELE----------VLTDPMR--KEVAVVRKKIDMANRELK 95 (155)
Q Consensus 46 ekV~aqLGrvEeetkrLa~ireELE----------~l~DP~R--KEV~~vRKkID~vnreLK 95 (155)
.++++.|.+++.+-.+-..=|+-|+ .||||.- .+++.+.++||.+.-+|.
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677766666666676665 5688875 456667777777766653
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.41 E-value=2.3e+02 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHH
Q 045900 77 RKEVAVVRKKIDMANRELKPLGQSIQ 102 (155)
Q Consensus 77 RKEV~~vRKkID~vnreLKpLg~scq 102 (155)
.+|++..++.+...+++.+-|-+.|+
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 24
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=38.05 E-value=15 Score=31.95 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=27.4
Q ss_pred hHHHhHHHHHHHHHHh------hccchhHHHHHHHHHHHHhhhhccc--chhhhH
Q 045900 55 AEEESRRLAQIWEELE------VLTDPMRKEVAVVRKKIDMANRELK--PLGQSI 101 (155)
Q Consensus 55 vEeetkrLa~ireELE------~l~DP~RKEV~~vRKkID~vnreLK--pLg~sc 101 (155)
.++-...+.+.|.||- .+.--+|+.+..++.+|+.+|+.|+ |.|+..
T Consensus 232 ~q~~~~~~~~~r~~~~~~~~~~~~~~~Lr~~i~~~~~~i~~LN~~L~~~~Fg~~~ 286 (483)
T 3euj_A 232 FQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIAFGQVK 286 (483)
T ss_dssp HHC-----------------CHHHHHHHHHHHHHHHHHHHHHGGGGSSCCBTTEE
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3344466777777775 5667899999999999999999998 666643
No 25
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=37.21 E-value=36 Score=28.39 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhccc
Q 045900 43 EVKERVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELK 95 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLK 95 (155)
++|++++.-+.. |.=..|++|++.||-.-.++|+..+++|=.+=|.|-
T Consensus 273 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~ 320 (329)
T 3hjl_A 273 DIKQKFLSNMSK-----RAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMI 320 (329)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 579999888752 344568999999999899999999999987766653
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.18 E-value=58 Score=27.46 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 045900 81 AVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMEL 132 (155)
Q Consensus 81 ~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmEL 132 (155)
+.+.=+|..+.+++..|.+....-+.++++.-+-|.+.......|-+.+.||
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566667777777777777778888888888888888888888888776
No 27
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=37.08 E-value=1.3e+02 Score=28.39 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=4.4
Q ss_pred HHHhhhhcccch
Q 045900 86 KIDMANRELKPL 97 (155)
Q Consensus 86 kID~vnreLKpL 97 (155)
.+..+..++.+|
T Consensus 879 ~l~ele~~l~~L 890 (1184)
T 1i84_S 879 ELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 28
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=36.98 E-value=13 Score=24.79 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhcccchhh---hHHHhHHHHHHHHH-HhhhhhHHHHHHHHHHHH
Q 045900 79 EVAVVRKKIDMANRELKPLGQ---SIQKKEREYKEALE-AFNEKSKEKAQLVTALME 131 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpLg~---scqKKEkEYKeaLE-afNEKnkEKa~LV~~LmE 131 (155)
.++.+|+.||.++++|-.|=. .|.++=-+||.+.. ..-...+|+.. +.++..
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~v-l~~~~~ 59 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEM-LAYLTA 59 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHH-HHHHHH
Confidence 477899999999999876643 46666667776532 22234455433 344443
No 29
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=36.72 E-value=17 Score=25.92 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=26.9
Q ss_pred ccch-hHHHHHHHHHHHHhhhhcccchhh---hHHHhHHHHHHH
Q 045900 72 LTDP-MRKEVAVVRKKIDMANRELKPLGQ---SIQKKEREYKEA 111 (155)
Q Consensus 72 l~DP-~RKEV~~vRKkID~vnreLKpLg~---scqKKEkEYKea 111 (155)
|.|| +-.++..+|..||.++++|--|=. .|.++=-+||.+
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 445689999999999999876632 455555556543
No 30
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.45 E-value=1.1e+02 Score=21.61 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=35.6
Q ss_pred hhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 045900 98 GQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVR 140 (155)
Q Consensus 98 g~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlR 140 (155)
|.....=-+||.+-|+.-|.-|--|-.||.++=||.+|-+-++
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~ 50 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQ 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334444678999999999999999999999999999887665
No 31
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=36.33 E-value=1.3e+02 Score=22.46 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.6
Q ss_pred hhhHHHhHHHHHHHHHHhhhh
Q 045900 98 GQSIQKKEREYKEALEAFNEK 118 (155)
Q Consensus 98 g~scqKKEkEYKeaLEafNEK 118 (155)
.+.|.+-..+|..++.++|.-
T Consensus 178 ~~~~~~a~~~Y~~~v~~~n~~ 198 (301)
T 2efk_A 178 SHMAEESKNEYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999987
No 32
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=30.46 E-value=16 Score=25.08 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHhhhhcccchhh---hHHHhHHHHHHHHH-HhhhhhHHHHHHHHHHHHH
Q 045900 75 PMRKEVAVVRKKIDMANRELKPLGQ---SIQKKEREYKEALE-AFNEKSKEKAQLVTALMEL 132 (155)
Q Consensus 75 P~RKEV~~vRKkID~vnreLKpLg~---scqKKEkEYKeaLE-afNEKnkEKa~LV~~LmEL 132 (155)
|.-..+..+|..||.++++|--|=. .|.++=-+||.+.. ..-...+|+. ++.++.++
T Consensus 9 ~~~~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~-vl~~~~~~ 69 (90)
T 2vkl_A 9 QPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMK-VIERYSEL 69 (90)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHH-HHHHHHTT
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHH-HHHHHHHH
Confidence 4444689999999999999876643 45566667775431 1223445543 34444443
No 33
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=30.08 E-value=1.5e+02 Score=21.16 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh---hHHHhHHHHH---HHHHHhhccchhHHHHHHHHHHHHh-----hhhcccchhhh
Q 045900 32 AREEEIERKKTEVKERVELQLGR---AEEESRRLAQ---IWEELEVLTDPMRKEVAVVRKKIDM-----ANRELKPLGQS 100 (155)
Q Consensus 32 akEeEIErkKmeVrekV~aqLGr---vEeetkrLa~---ireELE~l~DP~RKEV~~vRKkID~-----vnreLKpLg~s 100 (155)
..+++|.+...++.+.+..-|.+ +....+.+.. |--.||.+||-... ++.+=.++.. ...+|.+++..
T Consensus 47 ~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m~~~ 125 (216)
T 2i0m_A 47 NKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAG-IAKAVLQLKENQLAPDEEQLHQMGKL 125 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCSSCCC--CHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCchHHHHHHHHHHH
Confidence 45677888888888887755433 3344554433 44699999998875 5443333221 11345555555
Q ss_pred HHHhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045900 101 IQKKEREYKEALEAFNEKSKEKAQLVTALME 131 (155)
Q Consensus 101 cqKKEkEYKeaLEafNEKnkEKa~LV~~LmE 131 (155)
|+ .-++.|++||...+.+.|.-|...-+
T Consensus 126 v~---~~l~~a~~a~~~~d~~~a~~v~~~d~ 153 (216)
T 2i0m_A 126 SL---SMLADLLVAFPLHQASKAISIAQKDE 153 (216)
T ss_dssp HH---HHHHHHHHHGGGTCHHHHHHHHHTHH
T ss_pred HH---HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 54 57899999999999888766555443
No 34
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=29.99 E-value=36 Score=24.22 Aligned_cols=46 Identities=33% Similarity=0.410 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhccc--------chh---hhHHHhHHHHHHHHH-HhhhhhHHHHH
Q 045900 79 EVAVVRKKIDMANRELK--------PLG---QSIQKKEREYKEALE-AFNEKSKEKAQ 124 (155)
Q Consensus 79 EV~~vRKkID~vnreLK--------pLg---~scqKKEkEYKeaLE-afNEKnkEKa~ 124 (155)
.++.+|++||.++++|- .|= .+|.+.=-+||.... ..+...+|+..
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~v 61 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYI 61 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHH
Confidence 47889999999999987 443 257777777776543 34455566543
No 35
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.76 E-value=91 Score=21.83 Aligned_cols=58 Identities=33% Similarity=0.494 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHH-------hhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHH
Q 045900 44 VKERVELQLGRAEEESRRLAQIWEEL-------EVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEAL 112 (155)
Q Consensus 44 VrekV~aqLGrvEeetkrLa~ireEL-------E~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaL 112 (155)
+|.+++..+|..--|-.-|..+.+|| +.|-.-+-.|.+.+.|-|+. |+.|+.|...||
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~-----------lk~K~~EL~~~l 76 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL-----------LKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHh
Confidence 45566666677667777777777775 45666666777777777654 566666665543
No 36
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=29.46 E-value=1.1e+02 Score=21.73 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHH
Q 045900 62 LAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEAL 112 (155)
Q Consensus 62 La~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaL 112 (155)
+..+-++|-.-+.| ....|+.+++.+|..-.-|...|..+-....+||
T Consensus 114 l~~~g~~Li~~~~~---~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eAl 161 (161)
T 3lbx_A 114 LEKTREERFTMGHS---AHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161 (161)
T ss_dssp HHHHHHHHSCTTCT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444455443333 3577889999999888888888888877766664
No 37
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.52 E-value=1.7e+02 Score=21.20 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=16.3
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhhhc
Q 045900 63 AQIWEELEVLTDPMRKEVAVVRKKIDMANRE 93 (155)
Q Consensus 63 a~ireELE~l~DP~RKEV~~vRKkID~vnre 93 (155)
..++++|+.+.+-..+=...|+++|..+.+.
T Consensus 77 ~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 77 DQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555555555555555555555443
No 38
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=28.46 E-value=1.6e+02 Score=21.06 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh---hhHHHhHHH---HHHHHHHhhccchhHHHHHHHHHHHHh----hhhcccchhhhH
Q 045900 32 AREEEIERKKTEVKERVELQLG---RAEEESRRL---AQIWEELEVLTDPMRKEVAVVRKKIDM----ANRELKPLGQSI 101 (155)
Q Consensus 32 akEeEIErkKmeVrekV~aqLG---rvEeetkrL---a~ireELE~l~DP~RKEV~~vRKkID~----vnreLKpLg~sc 101 (155)
..+++|.....++++.+..-+. -+....+.+ -.|-..||.+||-...=...+....+. +..+|..++..|
T Consensus 51 ~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~~~~~el~~m~~~v 130 (227)
T 1t72_A 51 KGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAILLAEEPPLKPYVNINFMSEIV 130 (227)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH
Confidence 4567777888888887765543 233344443 346679999999988633344444332 233455555555
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045900 102 QKKEREYKEALEAFNEKSKEKAQLVTALME 131 (155)
Q Consensus 102 qKKEkEYKeaLEafNEKnkEKa~LV~~LmE 131 (155)
..-++.|++||...+.+.|.-|..+-+
T Consensus 131 ---~~ml~~a~~a~~~~d~~~a~~v~~~d~ 157 (227)
T 1t72_A 131 ---KEMVNDSVISFIQQDTLLAKKVIEKDD 157 (227)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467899999999999887765555443
No 39
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=27.93 E-value=34 Score=19.94 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=11.9
Q ss_pred HHhhhHHHHHHHHHH
Q 045900 29 TFQAREEEIERKKTE 43 (155)
Q Consensus 29 ~F~akEeEIErkKme 43 (155)
+=++++|++.|+||-
T Consensus 3 aqKekeEe~kr~k~~ 17 (26)
T 1jzp_A 3 AQKAKAEERKRRKMS 17 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457889999999853
No 40
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=27.91 E-value=2.2e+02 Score=22.34 Aligned_cols=57 Identities=16% Similarity=0.384 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---HHHHHHHHHH
Q 045900 78 KEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLT---ESERVRMKKL 144 (155)
Q Consensus 78 KEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~---ESErlRmkKL 144 (155)
+++.-++.|.+. +.+.|++-..+|..++.++|.-.. ++.+.+..++. .=|..|...|
T Consensus 192 k~~eK~~~k~~k-------~~~~~~~a~~~Y~~~v~~~n~~~~---~~~~~~~~~~~~~Q~lee~Rl~~l 251 (350)
T 3aco_A 192 EQLKKLQDKIEK-------CKQDVLKTKEKYEKSLKELDQGTP---QYMENMEQVFEQCQQFEEKRLRFF 251 (350)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444443 344577788999999999998643 34454444433 3444444444
No 41
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.13 E-value=1.8e+02 Score=21.06 Aligned_cols=89 Identities=7% Similarity=0.236 Sum_probs=50.3
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhh---------
Q 045900 47 RVELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNE--------- 117 (155)
Q Consensus 47 kV~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNE--------- 117 (155)
.|...|..+..-..+|......+ |+.|- ....++.+|+.+..+++-+++.|..+=+..+...+..-.
T Consensus 47 ~I~~~i~~i~~~v~~l~~~~~~~--L~~~~--~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~R 122 (180)
T 1s94_A 47 EIRAMIDKISDNVDAVKKKHSDI--LSAPQ--TDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLR 122 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHH
Confidence 34455556666666666666553 33332 244788999999999999999998887766654443310
Q ss_pred -hhHHHHHHHHHHHHHhhHHHHH
Q 045900 118 -KSKEKAQLVTALMELLTESERV 139 (155)
Q Consensus 118 -KnkEKa~LV~~LmELv~ESErl 139 (155)
+..-..-|..+|.++..+--..
T Consensus 123 ir~~q~~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDYNTT 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112344566666666554443
No 42
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=26.12 E-value=47 Score=23.43 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=32.5
Q ss_pred hHHHHHHH----HHHhhccchhHHHHHHHHHHH----HhhhhcccchhhhHH
Q 045900 59 SRRLAQIW----EELEVLTDPMRKEVAVVRKKI----DMANRELKPLGQSIQ 102 (155)
Q Consensus 59 tkrLa~ir----eELE~l~DP~RKEV~~vRKkI----D~vnreLKpLg~scq 102 (155)
|+-+..|| ++...+++-++..+..+-.-. +.+-..+.++|++|.
T Consensus 68 s~A~p~IW~~~~~~F~~~~~~~~~aa~~l~~aA~~gd~~~~~a~~~v~~~Ck 119 (128)
T 2ccy_A 68 GETKPEAFGSKSAEFLEGWKALATESTKLAAAAKAGPDALKAQAAATGKVCK 119 (128)
T ss_dssp CCBCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhHHH
Confidence 56677888 677777888888877666533 555677889999994
No 43
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=25.85 E-value=2.1e+02 Score=21.32 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=27.8
Q ss_pred hhhHHHhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045900 98 GQSIQKKEREYKEALEAFNEK-SKEKAQLVTALMELLTESERVRMKKL 144 (155)
Q Consensus 98 g~scqKKEkEYKeaLEafNEK-nkEKa~LV~~LmELv~ESErlRmkKL 144 (155)
.+.|.+-..+|+.++.++|.- +..=...+..+++-+-.-|.-|...|
T Consensus 185 ~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~l 232 (305)
T 2efl_A 185 HQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRM 232 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788999999999986 44333344444443334444444433
No 44
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.43 E-value=1.5e+02 Score=19.49 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHHhhccch---------------hHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHH
Q 045900 47 RVELQLGRAEEESRRLAQIWEELEVLTDP---------------MRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEA 111 (155)
Q Consensus 47 kV~aqLGrvEeetkrLa~ireELE~l~DP---------------~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKea 111 (155)
.+..++..++.+-..+...-+||+.+.|. .-.=+..|-++++.+..+++-|-..+...++++.+.
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888999988652 122334566677777766666666666555555543
No 45
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.38 E-value=40 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhhhhcccch
Q 045900 76 MRKEVAVVRKKIDMANRELKPL 97 (155)
Q Consensus 76 ~RKEV~~vRKkID~vnreLKpL 97 (155)
+.-+|..+|++||.+++|-.-|
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rL 31 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 6667888888888877764443
No 46
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=24.70 E-value=27 Score=24.14 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhcccchhh---hHHHhHHHHHHHHH-HhhhhhHHHHHH
Q 045900 79 EVAVVRKKIDMANRELKPLGQ---SIQKKEREYKEALE-AFNEKSKEKAQL 125 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpLg~---scqKKEkEYKeaLE-afNEKnkEKa~L 125 (155)
.+..+|..||.++++|-.|=. .|.++=-+||.+.. ..-...+|+..|
T Consensus 18 ~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl 68 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHH
Confidence 588999999999999876643 46666667776432 222455665544
No 47
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=24.45 E-value=2.2e+02 Score=21.58 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=31.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHH---hHHHHHHHHHHh
Q 045900 29 TFQAREEEIERKKTEVKERVELQLGRAEEE---SRRLAQIWEELE 70 (155)
Q Consensus 29 ~F~akEeEIErkKmeVrekV~aqLGrvEee---tkrLa~ireELE 70 (155)
.+=.+|-++-+-+.+++.+|..++..---| -..|..|++||-
T Consensus 205 ~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 205 AMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567777788888999999998877666 345777777774
No 48
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=24.00 E-value=2.2e+02 Score=20.95 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHh
Q 045900 61 RLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAF 115 (155)
Q Consensus 61 rLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEaf 115 (155)
.+..+-++|-.-+.|- ...|+.|++.+|..-.-|...|......+.+++..|
T Consensus 73 ~l~~~~~~L~~~~~~~---~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~ 124 (250)
T 1quu_A 73 QIAAIAQELNELDYHD---AVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLL 124 (250)
T ss_dssp HHHHHHHHHHHTTCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666664 346788999999999999999999999999999877
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.57 E-value=2.6e+02 Score=22.70 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHh
Q 045900 32 AREEEIERKKTEVKERVELQLGRAEEESRRLAQIWEELE 70 (155)
Q Consensus 32 akEeEIErkKmeVrekV~aqLGrvEeetkrLa~ireELE 70 (155)
+.....++++.+....|..+-.--.+.-.++......+|
T Consensus 360 ~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 333344455555444444443333344444444444333
No 50
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=23.52 E-value=1.9e+02 Score=22.86 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=32.4
Q ss_pred ccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045900 94 LKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERVRMKKLE 145 (155)
Q Consensus 94 LKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErlRmkKLE 145 (155)
+.-..+.+.+-..+|..++..||.-...=-+-+..+.+-+-+=|.-|...|-
T Consensus 192 ~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk 243 (320)
T 3m3w_A 192 VGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFK 243 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777799999999999986543233334444444445555665553
No 51
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.88 E-value=1.9e+02 Score=19.41 Aligned_cols=62 Identities=10% Similarity=0.241 Sum_probs=40.3
Q ss_pred HHHHhhhhHHHhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHH
Q 045900 48 VELQLGRAEEESRRLAQIWEELEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALE 113 (155)
Q Consensus 48 V~aqLGrvEeetkrLa~ireELE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLE 113 (155)
|+..|..+..-..+|...-+.+ |+.|.. ...++..+|.+..+++-++..|..+=+..+...+
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~--L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAI--LASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544 555543 3468888888888888888888887776655444
No 52
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.82 E-value=1.5e+02 Score=19.04 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHhhc
Q 045900 43 EVKERVELQLGRAEEESRRLAQIWEELEVL 72 (155)
Q Consensus 43 eVrekV~aqLGrvEeetkrLa~ireELE~l 72 (155)
++++-+..|+..++++-..|..++..|..+
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888888887777776653
No 53
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.23 E-value=1.8e+02 Score=24.61 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 045900 74 DPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMEL 132 (155)
Q Consensus 74 DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmEL 132 (155)
|-++.|+..++.++..+.++++ .-..++++.-+.+...+.+...|-+.+++|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~-------~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNE-------QQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666665555443 334556666666777778888888888886
No 54
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=20.14 E-value=42 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhcccch
Q 045900 79 EVAVVRKKIDMANRELKPL 97 (155)
Q Consensus 79 EV~~vRKkID~vnreLKpL 97 (155)
.++.+|..||.++++|=-|
T Consensus 9 ~L~~lR~~ID~iD~~il~L 27 (101)
T 3ret_A 9 GLADIREAIDRIDLDIVQA 27 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3667888888888876444
No 55
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.13 E-value=1.6e+02 Score=17.94 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=35.7
Q ss_pred cchhhhHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHH
Q 045900 95 KPLGQSIQKKEREYKEALEAFNEKSKEKAQLVTALMELLTESERV 139 (155)
Q Consensus 95 KpLg~scqKKEkEYKeaLEafNEKnkEKa~LV~~LmELv~ESErl 139 (155)
+|+-..-+..+.-+.++-+-|+.+..+.-.+.+.|..++..=+..
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~ 45 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTI 45 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888888888888888888888888776654443
No 56
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=20.02 E-value=2.7e+02 Score=23.84 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=35.5
Q ss_pred HhhccchhHHHHHHHHHHHHhhhhcccchhhhHHHhHHHHHHHHHHh
Q 045900 69 LEVLTDPMRKEVAVVRKKIDMANRELKPLGQSIQKKEREYKEALEAF 115 (155)
Q Consensus 69 LE~l~DP~RKEV~~vRKkID~vnreLKpLg~scqKKEkEYKeaLEaf 115 (155)
|-.-+.|.. ..|+.+++.+|..-.-|-+-|...+.-+++|++++
T Consensus 159 Li~~~Hpas---~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 202 (450)
T 3r6n_A 159 LVLNQHPAS---DKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYF 202 (450)
T ss_dssp HHHTTCTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456664 44778999999999999999999999999998875
Done!