Query 045901
Match_columns 171
No_of_seqs 115 out of 1097
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 11:23:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.7 7.2E-17 2.5E-21 135.4 12.1 141 2-171 28-174 (491)
2 2xut_A Proton/peptide symporte 99.7 1.1E-15 3.9E-20 129.2 12.9 143 2-170 27-175 (524)
3 3o7q_A L-fucose-proton symport 99.6 5.4E-15 1.8E-19 121.8 13.9 134 6-167 44-177 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.5 2.1E-14 7.2E-19 118.5 10.0 128 11-170 51-182 (451)
5 2gfp_A EMRD, multidrug resista 99.5 2E-14 6.9E-19 116.6 8.9 127 12-169 24-150 (375)
6 4gc0_A D-xylose-proton symport 99.5 1.5E-13 5E-18 115.1 11.6 133 21-166 53-185 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.3 2.1E-11 7.3E-16 100.4 11.6 141 3-171 268-411 (451)
8 3o7q_A L-fucose-proton symport 99.2 1.4E-10 4.8E-15 95.2 12.0 134 4-171 275-409 (438)
9 2cfq_A Lactose permease; trans 99.1 1E-11 3.6E-16 102.8 -0.2 139 5-168 25-163 (417)
10 2cfq_A Lactose permease; trans 99.0 3.2E-10 1.1E-14 93.8 5.9 132 8-170 241-376 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.9 3.4E-09 1.1E-13 88.6 6.7 143 4-168 300-447 (491)
12 4gc0_A D-xylose-proton symport 98.6 1.2E-06 4.2E-11 72.8 15.9 130 11-168 300-431 (491)
13 2gfp_A EMRD, multidrug resista 98.6 2E-09 6.9E-14 86.9 -1.5 136 4-169 216-352 (375)
14 2xut_A Proton/peptide symporte 97.4 5.8E-05 2E-09 63.3 2.7 122 25-168 337-466 (524)
15 4dve_A Biotin transporter BIOY 24.1 1.8E+02 0.006 21.3 5.7 20 31-50 101-120 (198)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.71 E-value=7.2e-17 Score=135.39 Aligned_cols=141 Identities=18% Similarity=0.356 Sum_probs=125.5
Q ss_pred ceeccHHHHHHHhhHh-----hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhh-ccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901 2 ASNGLMPNMILYLCRE-----YNMETTAATNVLFIWTAATNFVPILGAFLADS-CMGRYPMIGFGCIISLLGMVLLWFTA 75 (171)
Q Consensus 2 ~~~gv~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr-~~Gr~~~i~~~~~l~~lg~~ll~~~~ 75 (171)
++|++...++.|++++ +|+++.+++.+.+.+.++..++.+++|+++|| + ||||++.++.++..++.+++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~~~~~~~ 106 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHIVLALPF 106 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhh
Confidence 4678889999999998 99999999999999999999999999999999 7 999999999999999998776543
Q ss_pred hcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 045901 76 IFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAG 155 (171)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG 155 (171)
+.+.+++++++.|+|.|...|...++++|.+++++. .|++.+++++...++|
T Consensus 107 -----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 107 -----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-----RRDAGFSIFVFGINLG 158 (491)
T ss_dssp -----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-----HHHHHHHHHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-----cceeeehHHHHHHHHH
Confidence 356788899999999999999999999999976432 4788999999999999
Q ss_pred HHHHhHHHHhhccccC
Q 045901 156 SMLSATFIVYIQDNLG 171 (171)
Q Consensus 156 ~~i~~~~~~~i~~~~g 171 (171)
..+++.+.+++.++.|
T Consensus 159 ~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999877543
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.65 E-value=1.1e-15 Score=129.22 Aligned_cols=143 Identities=24% Similarity=0.424 Sum_probs=124.0
Q ss_pred ceeccHHHHHHHhhHhhC------CChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901 2 ASNGLMPNMILYLCREYN------METTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTA 75 (171)
Q Consensus 2 ~~~gv~~~l~~yl~~~lg------~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~ 75 (171)
++|++...++.|+++++| +++.+++.+.+.+.+...++.+++|+++||++||||++.++.++..++.+++.++.
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 467788899999999999 99999999999999999999999999999955999999999999999988776642
Q ss_pred hcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 045901 76 IFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAG 155 (171)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG 155 (171)
.+.+.+++++++.|++.|...|...++++|.+++++. .++...+++++...++|
T Consensus 107 ----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 107 ----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK----SLAQKAFDMFYFTINFG 160 (524)
T ss_dssp ----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT----THHHHHHHHHHHHHHHH
T ss_pred ----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch----HHHHHHHHHHHHHHHHH
Confidence 0356788889999999999999999999999976442 23567788899999999
Q ss_pred HHHHhHHHHhhcccc
Q 045901 156 SMLSATFIVYIQDNL 170 (171)
Q Consensus 156 ~~i~~~~~~~i~~~~ 170 (171)
.++++.+.+++.+..
T Consensus 161 ~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 161 SFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHTSTHHHHTS
T ss_pred HHHHHHHHHHHhccc
Confidence 999999988887644
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.62 E-value=5.4e-15 Score=121.78 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=116.0
Q ss_pred cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901 6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC 85 (171)
Q Consensus 6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~ 85 (171)
+...+.+++.+++|.++.+.+.+.+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++......
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------- 114 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEI-------- 114 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhcccc--------
Confidence 334455667889999999999999999999999999999999998 99999999999999999888432211
Q ss_pred cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901 86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY 165 (171)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~ 165 (171)
.+.+.+++++++.|+|.|...+...++++|.++++ +|++..+++....++|.++++.+.++
T Consensus 115 ------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 115 ------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES-------SGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST-------THHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15778899999999999999999999999998643 27888999999999999999998888
Q ss_pred hc
Q 045901 166 IQ 167 (171)
Q Consensus 166 i~ 167 (171)
+.
T Consensus 176 l~ 177 (438)
T 3o7q_A 176 LI 177 (438)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=2.1e-14 Score=118.47 Aligned_cols=128 Identities=12% Similarity=0.063 Sum_probs=111.7
Q ss_pred HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHH----hhhcCCCCCCccc
Q 045901 11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWF----TAIFPQEKPPVCD 86 (171)
Q Consensus 11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~----~~~~~~~~~~~~~ 86 (171)
.+++.+++ .++.+.+.+.+.+.+...++.+++|+++||+ ||||.+.++.++..++.+++.+ +.
T Consensus 51 ~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~----------- 117 (451)
T 1pw4_A 51 MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS----------- 117 (451)
T ss_dssp HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS-----------
T ss_pred HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc-----------
Confidence 34445577 9999999999999999999999999999998 9999999999999999998877 43
Q ss_pred ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901 87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI 166 (171)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i 166 (171)
+.+.+++++++.|++.|...+...++++|.++++ +|++.+++.....++|.++++.+.+++
T Consensus 118 ------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 118 ------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-------ERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp ------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT-------HHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888899999999999999999999998632 378999999999999999999988886
Q ss_pred cccc
Q 045901 167 QDNL 170 (171)
Q Consensus 167 ~~~~ 170 (171)
.+..
T Consensus 179 ~~~~ 182 (451)
T 1pw4_A 179 MAWF 182 (451)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.53 E-value=2e-14 Score=116.55 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=112.7
Q ss_pred HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901 12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG 91 (171)
Q Consensus 12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~ 91 (171)
+.+.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.+++
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------- 86 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS---------------- 86 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc----------------
Confidence 334568999999999999999999999999999999998 999999999999999998887764
Q ss_pred CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901 92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN 169 (171)
Q Consensus 92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~ 169 (171)
+.+.+++.+++.|++.+...+...+++.|.+++++ |++.++++....++|..+++.+.+++.++
T Consensus 87 -------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 87 -------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ-------LRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------CCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred -------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 56778899999999999999999999999986532 57788888899999999999999888764
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.50 E-value=1.5e-13 Score=115.06 Aligned_cols=133 Identities=12% Similarity=0.030 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhH
Q 045901 21 ETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQL 100 (171)
Q Consensus 21 s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (171)
++.+.+.+++.+.++..++++++|+++||+ ||||++.++.+++.++.++++++......... .. .-......+.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----~~-~~~~~~a~~~ 126 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP----DN-TVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----SS-SCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----hh-HHHHHHhhhH
Confidence 345677888999999999999999999998 99999999999999999988764311000000 00 0000012367
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901 101 MLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI 166 (171)
Q Consensus 101 ~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i 166 (171)
+.++++|++.|+|.|+..+..+.+++|..+++ +|++...++.....+|.+++..+...+
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~-------~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAH-------IRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG-------GHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH-------hhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 88999999999999999999999999987532 378888888888888888887765544
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.29 E-value=2.1e-11 Score=100.36 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=113.1
Q ss_pred eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc-cCchhHHHHHHHHHH-HHHHHHHHhhhcCCC
Q 045901 3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC-MGRYPMIGFGCIISL-LGMVLLWFTAIFPQE 80 (171)
Q Consensus 3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~-~Gr~~~i~~~~~l~~-lg~~ll~~~~~~~~~ 80 (171)
++++..+++.|+++.+|+++.+++.+.....+...++.++.|+++||+ .|||+.+.++.++.. ++.+++.+..
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 342 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----- 342 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-----
Confidence 456677889999988999999999999999999999999999999993 189988888877766 5544332211
Q ss_pred CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHHHH
Q 045901 81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAA-GSMLS 159 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~ni-G~~i~ 159 (171)
..+.+.+.+..++.+++.+...+....+..|.++++ .|++.++++....++ |..++
T Consensus 343 ----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 343 ----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-------AAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh-------hhhhHHHHHHHHHHHHHHHHH
Confidence 113455667777888988888888889999988642 379999999999999 99999
Q ss_pred hHHHHhhccccC
Q 045901 160 ATFIVYIQDNLG 171 (171)
Q Consensus 160 ~~~~~~i~~~~g 171 (171)
+.+.+++.++.|
T Consensus 400 ~~~~g~l~~~~g 411 (451)
T 1pw4_A 400 SAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHHHhcC
Confidence 999999887654
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.20 E-value=1.4e-10 Score=95.21 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=105.4
Q ss_pred eccHHHHHHH-hhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901 4 NGLMPNMILY-LCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP 82 (171)
Q Consensus 4 ~gv~~~l~~y-l~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~ 82 (171)
+++..+++.| +++.+|+++.+++.+...+.+...++.+++|+++||+ ||||.+.++.++..++.+++.+..
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------- 346 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFAG------- 346 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHcC-------
Confidence 4556788999 8888899999999999999999999999999999997 999999999999988877665532
Q ss_pred CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901 83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF 162 (171)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~ 162 (171)
+.. ..+...+.+++.+...|...++..|.++++ ++....+.. ..++|..+++.+
T Consensus 347 ----------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 347 ----------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp ----------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--------HHHHHHHHH-HTTHHHHHHHHH
T ss_pred ----------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------ccchhhHHH-HHHHHHHHHHHH
Confidence 222 334457888899999999998888877532 233334433 456899999999
Q ss_pred HHhhccccC
Q 045901 163 IVYIQDNLG 171 (171)
Q Consensus 163 ~~~i~~~~g 171 (171)
.+++.|..|
T Consensus 401 ~g~l~~~~g 409 (438)
T 3o7q_A 401 MGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999887643
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.08 E-value=1e-11 Score=102.80 Aligned_cols=139 Identities=10% Similarity=-0.012 Sum_probs=87.9
Q ss_pred ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901 5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV 84 (171)
Q Consensus 5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~ 84 (171)
.+.++++.|+++++|+++.+++.+.+.+.+...++.+++|+++||+ ||||.+.++.++..++...+......+.
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~----- 98 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPL----- 98 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHH-----
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3457899999999999999999999999999999999999999998 9999999998877654321211010000
Q ss_pred ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901 85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV 164 (171)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~ 164 (171)
-...+..++.+.+++.|...+...+...+..++ .+ ++++..++......++|..+++.+.+
T Consensus 99 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~----~~~~~~~g~~~~~~~~g~~~~~~l~~ 159 (417)
T 2cfq_A 99 --------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VS----RRSNFEFGRARMFGCVGWALGASIVG 159 (417)
T ss_dssp --------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-HH----HHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hh----hhcccchHHHHHHHHHHHHHHHHHHH
Confidence 000012233344444444444444444333211 11 12344455555566788888888777
Q ss_pred hhcc
Q 045901 165 YIQD 168 (171)
Q Consensus 165 ~i~~ 168 (171)
++.+
T Consensus 160 ~l~~ 163 (417)
T 2cfq_A 160 IMFT 163 (417)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.01 E-value=3.2e-10 Score=93.81 Aligned_cols=132 Identities=5% Similarity=0.020 Sum_probs=93.3
Q ss_pred HHHHHHhhHhhCC---ChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901 8 PNMILYLCREYNM---ETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV 84 (171)
Q Consensus 8 ~~l~~yl~~~lg~---s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~ 84 (171)
..++.|+++.++. +..+.+.......+...++.+++|+++||+ ||||.+.++.++..++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~--------- 310 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT--------- 310 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 3467788766553 344556666666677788899999999998 999999998888877755443221
Q ss_pred ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHhHHH
Q 045901 85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSW-YYVSIAAGSMLSATFI 163 (171)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~-~y~~~niG~~i~~~~~ 163 (171)
+.+.+.+...+.+++.+...+....+..|.+++ +.|++.+++ +....++|..+++.+.
T Consensus 311 --------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 311 --------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp --------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 233444555566677666667777888888753 236777777 4667779999999999
Q ss_pred Hhhcccc
Q 045901 164 VYIQDNL 170 (171)
Q Consensus 164 ~~i~~~~ 170 (171)
+++.++.
T Consensus 370 G~l~~~~ 376 (417)
T 2cfq_A 370 GNMYESI 376 (417)
T ss_dssp HTHHHHS
T ss_pred HHHHHhc
Confidence 9887643
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.85 E-value=3.4e-09 Score=88.56 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=107.3
Q ss_pred eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHH-----HHHHHHHHHHHHHHHhhhcC
Q 045901 4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIG-----FGCIISLLGMVLLWFTAIFP 78 (171)
Q Consensus 4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~-----~~~~l~~lg~~ll~~~~~~~ 78 (171)
......++.|.++.++.+..+++.+.........++.++.|+++||+ |||+... ++.++..++.+++.......
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY 378 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556778899888888877778888888888899999999999998 9987655 77777777776665543110
Q ss_pred CCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901 79 QEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML 158 (171)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i 158 (171)
.. ....+.+.+.+..++.++|.+...+...++..|..+++. |++..+++....++|..+
T Consensus 379 ~~--------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 379 GT--------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-------NSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp CC--------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-------SSSSTHHHHHHHHHHHHH
T ss_pred CC--------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHH
Confidence 00 001134556677788999999999999999999987543 577888888999999999
Q ss_pred HhHHHHhhcc
Q 045901 159 SATFIVYIQD 168 (171)
Q Consensus 159 ~~~~~~~i~~ 168 (171)
++.+.+++.+
T Consensus 438 ~~~~~~~~~~ 447 (491)
T 4aps_A 438 NAQLVTLYNA 447 (491)
T ss_dssp HHHHGGGGGG
T ss_pred HHHHHHHHhc
Confidence 9999888876
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.65 E-value=1.2e-06 Score=72.81 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=91.3
Q ss_pred HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901 11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS 90 (171)
Q Consensus 11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~ 90 (171)
.+++.+..+.+................++.++++++.||+ |||+.++.+.....++.+.+.......
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~------------ 366 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ------------ 366 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc------------
Confidence 3445557788888888888888888999999999999998 999999999999888877665443110
Q ss_pred CCCCccchhHHHHHHHHH--HHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901 91 GCESATASQLMLLYSAFG--LMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD 168 (171)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~--l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~ 168 (171)
. ......+... ..+.+. +..|....+.+|.+|.+ .|++..++.....+++.++++.+.+++.+
T Consensus 367 ------~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~-------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 367 ------A-PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNA-------IRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp ------C-CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTT-------THHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred ------c-chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1122222222 222232 23466678889999753 37888888888888888888777766543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.63 E-value=2e-09 Score=86.92 Aligned_cols=136 Identities=9% Similarity=0.002 Sum_probs=99.2
Q ss_pred eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHH-HHHHHHHHHHhhhcCCCCC
Q 045901 4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCII-SLLGMVLLWFTAIFPQEKP 82 (171)
Q Consensus 4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l-~~lg~~ll~~~~~~~~~~~ 82 (171)
++...+++.|+++++|+++.+++.+......+..++.++.|+++||+ ||+ +..+..+ ...+..++.....
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~~~~~~~~~~~------ 286 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLAGLLMWIPDWF------ 286 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHTSSSSSHHHHH------
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHhhh------
Confidence 34455667788888999999999999999999999999999999997 772 3333333 3333222111110
Q ss_pred CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901 83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF 162 (171)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~ 162 (171)
...+.+.+.+...+.+++.+...+...++..|..+ + +|++..+......++|..+++.+
T Consensus 287 -------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~-------~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 287 -------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F-------LAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H-------HHHHHHHHHHHHHHHHHHCCSTT
T ss_pred -------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c-------ccchHHHHHHHHHHHHHHHHHHH
Confidence 01134556677788999999999999999999763 1 37889999999999999999888
Q ss_pred HHhhccc
Q 045901 163 IVYIQDN 169 (171)
Q Consensus 163 ~~~i~~~ 169 (171)
.+++.++
T Consensus 346 ~g~l~~~ 352 (375)
T 2gfp_A 346 SAMLPQT 352 (375)
T ss_dssp CTHHHHH
T ss_pred HHHHhcC
Confidence 8877653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.42 E-value=5.8e-05 Score=63.28 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHh----hhccCc----hhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCcc
Q 045901 25 ATNVLFIWTAATNFVPILGAFLA----DSCMGR----YPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESAT 96 (171)
Q Consensus 25 a~~~~~~~~~~~~i~~~~~G~la----Dr~~Gr----~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (171)
.+.+.........+..++.+++. ||. || ++.+.++.++..++.+++........ ...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~ 401 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD--------------GGS 401 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT--------------TTC
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCC
Confidence 34443333333444444444443 443 33 35677777777777655443210000 000
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901 97 ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD 168 (171)
Q Consensus 97 ~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~ 168 (171)
..+.+.+.+..++.+++.+...+....+..|..+++. |++..++++...++|..+++.+.+++.+
T Consensus 402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM-------KGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC-------CTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1134556677788999999999999999999987532 5788888888999999999999988876
No 15
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.05 E-value=1.8e+02 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.2
Q ss_pred HHHHHHhhhhhhhHHHhhhc
Q 045901 31 IWTAATNFVPILGAFLADSC 50 (171)
Q Consensus 31 ~~~~~~~i~~~~~G~laDr~ 50 (171)
.|..+-.+.+.+.|+++||.
T Consensus 101 GYLiGF~~aA~v~G~l~~~~ 120 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKL 120 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45666777888999999996
Done!