BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045902
(1472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 47/264 (17%)
Query: 173 LGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGR 232
+G +++P R + VS ++ M LLGP GSGKTT+L+ ++G + G
Sbjct: 18 VGVEKIYPGGARSV---RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGD 71
Query: 233 VTYCGHELTEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRRE 291
V G +T+ PQ R + Q+ MTV + + F RE
Sbjct: 72 VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSF-----------------GLRE 114
Query: 292 KDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKK 351
K P E+DA ++ +L+ + L+ A N +SGGQ++
Sbjct: 115 KRV---PKDEMDARVRE--------------LLRFMRLESYA-----NRFPHELSGGQQQ 152
Query: 352 RVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411
RV L + L DE +D+ ++ F+RQ+ VT + + E +
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALE 211
Query: 412 LFDDIILLSEGEIVYQGPREYVLD 435
+ D +++L EG + G E V +
Sbjct: 212 VADRVLVLHEGNVEQFGTPEEVYE 235
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG----RKTXXXXXXXXXXXXXPKKQETF 961
++ VS R G + L+G SG+GKTT++ ++AG K P+K
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYS-AWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGV 1020
R G QN ++T+Y+++ + R+PKD L + P
Sbjct: 87 -RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-- 143
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTI 1079
LS Q++R+ +A L P ++ DEP + +D + + VR D G T V
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203
Query: 1080 HQPSIDIFEAFDELFLMKRG 1099
H + E D + ++ G
Sbjct: 204 HDQE-EALEVADRVLVLHEG 222
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N++VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICK 189
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRTV+ H+ S + D + +M++G
Sbjct: 190 GRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 39/253 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + ++P+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQ--------------------RFYIPEN 59
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++G D++ + L + +VG E G+SGGQ++R+ LV K L
Sbjct: 114 AAKLAG-----AHDFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
DE ++ LD + I+R M ++ V +I L D II++ +G+IV Q
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 220
Query: 428 GPREYVLDFFESV 440
G + +L ES+
Sbjct: 221 GKHKELLSEPESL 233
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N++VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICK 189
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRTV+ H+ S + D + +M++G
Sbjct: 190 GRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 39/253 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + ++P+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 59
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++G D++ + L + +VG E G+SGGQ++R+ LV K L
Sbjct: 114 AAKLAG-----AHDFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
DE ++ LD + I+R M ++ V +I L D II++ +G+IV Q
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 220
Query: 428 GPREYVLDFFESV 440
G + +L ES+
Sbjct: 221 GKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N++VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICK 187
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRTV+ H+ S + D + +M++G
Sbjct: 188 GRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 39/253 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + ++P+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 57
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++G D++ + L + +VG E G+SGGQ++R+ LV K L
Sbjct: 112 AAKLAG-----AHDFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
DE ++ LD + I+R M ++ V +I L D II++ +G+IV Q
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 218
Query: 428 GPREYVLDFFESV 440
G + +L ES+
Sbjct: 219 GKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N++VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICK 193
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRTV+ H+ S + D + +M++G
Sbjct: 194 GRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 39/253 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 63
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++G D++ + L + +VG E G+SGGQ++R+ LV K L
Sbjct: 118 AAKLAG-----AHDFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
DE ++ LD + I+R M ++ V +I L D II++ +G+IV Q
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 224
Query: 428 GPREYVLDFFESV 440
G + +L ES+
Sbjct: 225 GKHKELLSEPESL 237
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N++VG G GLS QR+R+ IA LV NP I+ D+ TS LD + ++MR + + +
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM-HKICK 193
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRTV+ H+ S + D + +M++G
Sbjct: 194 GRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 39/253 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 63
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++G D++ + L + +VG E G+SGGQ++R+ LV K L
Sbjct: 118 AAKLAG-----AHDFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
D+ ++ LD + I+R M ++ V +I L D II++ +G+IV Q
Sbjct: 169 FDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 224
Query: 428 GPREYVLDFFESV 440
G + +L ES+
Sbjct: 225 GKHKELLSEPESL 237
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 35/250 (14%)
Query: 905 LLQDVSGAFRPGVLTAL---------------VGVSGAGKTTLMDVLAGRKTXXXXXXXX 949
++++VS F+ G + AL +G SGAGKTT M ++AG
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 950 XXXXXPKKQETFA----RISGYCEQNDIHSPNVTIYESLLYS-AWLRLPKDXXXXXXXXX 1004
+ R G Q PN+T +E++ + +++ K+
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEV 124
Query: 1005 XXXKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIV 1061
+ + L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +
Sbjct: 125 AKILDIHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV-------IYAGPLGRQSHK 1114
++ V++ + G T++ H P+ DIF D + ++ +G V +Y P+ Q
Sbjct: 183 VKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
Query: 1115 LVEYFEAVPG 1124
L+ + G
Sbjct: 240 LIGEINELEG 249
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGH 238
KK K+ L +V+ ++ +LGP G+GKTT ++ ++G S L R+
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
+L R + Q + +T E + F
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP--------------------------- 106
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
+ MS + + V KIL + V N R +SG Q++RV
Sbjct: 107 -------LTNMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRELSGAQQQRVALARA 154
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418
LV L +DE + LD+ ++++ VT+++ PA + + + D + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213
Query: 419 LSEGEIVYQGPREYVLD 435
L +G++V G E + D
Sbjct: 214 LVKGKLVQVGKPEDLYD 230
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
++LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKARE 574
Query: 1072 GRTVVCTIHQPSI----DIFEAFDELFLMKRGGH 1101
GRT + H+ S D+ FD ++++G H
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 39/214 (18%)
Query: 169 IEGVLGFLRL---FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225
I+G L F + +PS+K +++IL ++ VK + L+G G GK+T +Q + D
Sbjct: 384 IQGNLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 226 SLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLA 285
+ G V+ G ++ RT + VR + +GV ++ +L
Sbjct: 443 ---LDGMVSIDGQDI------RT-------------INVR----YLREIIGVVSQEPVLF 476
Query: 286 ELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345
+ E + D +D KA +K + D+++K L D +VG E +
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKA-----VKEANAYDFIMK---LPHQFDTLVG-ERGAQL 527
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSST 379
SGGQK+R+ LV K L +DE ++ LD+ +
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 113/274 (41%), Gaps = 47/274 (17%)
Query: 167 NAIEGVLGFLRL---FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223
N +EG + F + +P++ + +L +S VK + L+G G GK+T++Q L
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 224 DKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 280
D ++G V G E+ + Q +SQ + + ++ E + + G +R
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAY-----GDNSR 1134
Query: 281 FELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340
E+ R K+A I SL Y + VG++
Sbjct: 1135 VVSYEEIVRAAKEANIHQ---------------FIDSLPDKY-----------NTRVGDK 1168
Query: 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII 400
+ +SGGQK+R+ LV L +DE ++ LD+ + ++V+ ++I
Sbjct: 1169 GTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEALDKAREGRTCIVI 1226
Query: 401 SLLQPAPETYDLFDDIILLSEGEIVYQGPREYVL 434
+ + DL I+++ G++ G + +L
Sbjct: 1227 AHRLSTIQNADL---IVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
++LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKARE 574
Query: 1072 GRTVVCTIHQPSI----DIFEAFDELFLMKRGGH 1101
GRT + H+ S D+ FD ++++G H
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 39/214 (18%)
Query: 169 IEGVLGFLRL---FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225
I+G L F + +PS+K +++IL ++ VK + L+G G GK+T +Q + D
Sbjct: 384 IQGNLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 226 SLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLA 285
+ G V+ G ++ RT + VR + +GV ++ +L
Sbjct: 443 ---LDGMVSIDGQDI------RT-------------INVR----YLREIIGVVSQEPVLF 476
Query: 286 ELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345
+ E + D +D KA +K + D+++K L D +VG E +
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKA-----VKEANAYDFIMK---LPHQFDTLVG-ERGAQL 527
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSST 379
SGGQK+R+ LV K L +DE ++ LD+ +
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 113/274 (41%), Gaps = 47/274 (17%)
Query: 167 NAIEGVLGFLRL---FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223
N +EG + F + +P++ + +L +S VK + L+G G GK+T++Q L
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 224 DKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 280
D ++G V G E+ + Q +SQ + + ++ E + + G +R
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAY-----GDNSR 1134
Query: 281 FELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340
E+ R K+A I SL Y + VG++
Sbjct: 1135 VVSYEEIVRAAKEANIHQ---------------FIDSLPDKY-----------NTRVGDK 1168
Query: 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII 400
+ +SGGQK+R+ LV L +DE ++ LD+ + ++V+ ++I
Sbjct: 1169 GTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEALDKAREGRTCIVI 1226
Query: 401 SLLQPAPETYDLFDDIILLSEGEIVYQGPREYVL 434
+ + DL I+++ G++ G + +L
Sbjct: 1227 AHRLSTIQNADL---IVVIQNGKVKEHGTHQQLL 1257
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N++VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICK 187
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRTV+ I + + D + +M++G
Sbjct: 188 GRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 39/253 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + ++P+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 57
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++G D++ + L + +VG E G+SGGQ++R+ LV K L
Sbjct: 112 AAKLAG-----AHDFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
DE ++ LD + I+R M ++ V +I + L T D II++ +G+IV Q
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARL----STVKNADRIIVMEKGKIVEQ 218
Query: 428 GPREYVLDFFESV 440
G + +L ES+
Sbjct: 219 GKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N++VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICK 193
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRTV+ I + + D + +M++G
Sbjct: 194 GRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 39/253 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 63
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++G D++ + L + +VG E G+SGGQ++R+ LV K L
Sbjct: 118 AAKLAG-----AHDFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
DE ++ LD + I+R M ++ V +I + L T D II++ +G+IV Q
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARL----STVKNADRIIVMEKGKIVEQ 224
Query: 428 GPREYVLDFFESV 440
G + +L ES+
Sbjct: 225 GKHKELLSEPESL 237
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 35/250 (14%)
Query: 905 LLQDVSGAFRPGVLTAL---------------VGVSGAGKTTLMDVLAGRKTXXXXXXXX 949
++++VS F+ G + AL +G SGAGKTT M ++AG
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 950 XXXXXPKKQETFA----RISGYCEQNDIHSPNVTIYESLLYS-AWLRLPKDXXXXXXXXX 1004
+ R G Q PN+T +E++ + +++ K+
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEV 124
Query: 1005 XXXKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIV 1061
+ + L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +
Sbjct: 125 AKILDIHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV-------IYAGPLGRQSHK 1114
++ V++ + G T++ H P+ DIF D + ++ +G V +Y P+ Q
Sbjct: 183 VKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
Query: 1115 LVEYFEAVPG 1124
L+ + G
Sbjct: 240 LIGEINELEG 249
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 99/257 (38%), Gaps = 43/257 (16%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGH 238
KK K+ L +V+ ++ +LGP G+GKTT ++ ++G S L R+
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
+L R + Q + +T E + F
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP--------------------------- 106
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
+ MS + + V KIL + V N R +SGGQ++RV
Sbjct: 107 -------LTNMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRELSGGQQQRVALARA 154
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418
LV L +DE + LD+ ++++ VT+++ PA + + + D + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213
Query: 419 LSEGEIVYQGPREYVLD 435
L +G++V G E + D
Sbjct: 214 LVKGKLVQVGKPEDLYD 230
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVL-------AGRKTXXXXXXXXXXXXXPKKQ 958
L+ ++ + G +TA++G +G GK+TL +GR K +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAW-LRLPKDXXXXXXXXXXXXKALRNSLVGL 1017
E+ + + D + ++Y+ + + A ++LP+D + + L
Sbjct: 84 ESIGIV---FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-LKDK 139
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVV 1076
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V + G T++
Sbjct: 140 P-THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITII 198
Query: 1077 CTIHQPSIDIFEAF-DELFLMKRGGHVIYAGP 1107
H IDI + D +F+MK G ++ P
Sbjct: 199 IATH--DIDIVPLYCDNVFVMKEGRVILQGNP 228
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 59/285 (20%)
Query: 190 HDVSGI---VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
H + GI +K +T +LG G GK+TL Q +G S SGR+ +
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILF---------DN 69
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
+ Y + G M +RE+ +G F+ + + A + D A
Sbjct: 70 KPIDYSRK-----GIMKLRES---------IGIVFQ---DPDNQLFSASVYQDVSFGAVN 112
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
++ + D LK G++ D + +S GQKKRV +LV K L
Sbjct: 113 MKLPEDEIRKRV--DNALKRTGIEHLKD-----KPTHCLSFGQKKRVAIAGVLVMEPKVL 165
Query: 367 FMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL------FDDIILLS 420
+DE + GLD +I++ + +M +T+II+ T+D+ D++ ++
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA-------THDIDIVPLYCDNVFVMK 218
Query: 421 EGEIVYQG-PREYVL--DFFESVGFRCPERKGAADFLQEVTSRKD 462
EG ++ QG P+E + V R P R G L E+ KD
Sbjct: 219 EGRVILQGNPKEVFAEKEVIRKVNLRLP-RIG---HLMEILKEKD 259
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 44/241 (18%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-R 247
L++++ +K LLGP GSGK+TLL ++G + SG++ + ++TE P+ R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDR 75
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
+ Q+ + MTV + + F EL + P EID ++
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFP-------------LELRK-------APREEIDKKVR 115
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A K+L +D N +SGGQ++RV LV + L
Sbjct: 116 EVA--------------KMLHIDKLL-----NRYPWQLSGGQQQRVAIARALVKEPEVLL 156
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
+DE + LD+ ++ ++++ +T + A E + D I ++ EGEI+
Sbjct: 157 LDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQV 215
Query: 428 G 428
G
Sbjct: 216 G 216
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTXXXXXXXXXXXXXPKKQETFA 962
L +++ + G AL+G SG+GK+TL+ +AG + P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLVGLPGVD 1021
R G QN P++T+Y+++ + LR P++ + L P
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW-- 132
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 9/209 (4%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA 962
L++L+ ++ R G + ++G SG+GK+T + L + K
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 963 RIS---GYCEQNDIHSPNVTIYESLLYSAW--LRLPKDXXXXXXXXXXXXKALRNSLVGL 1017
++ G Q P++T+ ++ + + P++ L++
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
P D LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G T+V
Sbjct: 136 P--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 193
Query: 1078 TIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
H+ E D + M GG++I G
Sbjct: 194 VTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGGQ +RV L K + DE ++ LD +++ M+Q+ + +TM++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 196
Query: 405 PAPETYDLFDDIILLSEGEIVYQGPREYVLD 435
++ D ++ + G I+ +G E + D
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALS 220
LE+L ++ ++ + +++GP GSGK+T L+ L+
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 50
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 13/230 (5%)
Query: 882 HVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941
H+ +D+ KS G L++L+ ++ R G + ++G SG+GK+T + L +
Sbjct: 20 HMLQMIDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 942 XXXXXXXXXXXXXPKKQETFARIS---GYCEQNDIHSPNVTIYESLLYSAW--LRLPKDX 996
K ++ G Q P++T+ ++ + + P++
Sbjct: 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREK 135
Query: 997 XXXXXXXXXXXKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
L++ P D LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 136 AEAKAMELLDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE 193
Query: 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
V+ ++ + G T+V H+ E D + M GG++I G
Sbjct: 194 MVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGGQ +RV L K + DE ++ LD +++ M+Q+ + +TM++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 217
Query: 405 PAPETYDLFDDIILLSEGEIVYQGPREYVLD 435
++ D ++ + G I+ +G E + D
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALS 220
LE+L ++ ++ + +++GP GSGK+T L+ L+
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N+LVG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAK 602
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
GRT + H+ S I A +L + + G V+ G
Sbjct: 603 GRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 27/199 (13%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTXXXXXXXXXX 951
E +++L+ +S + PG ALVG SG GK+T++ D L G
Sbjct: 1088 ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-----IFIDGSE 1142
Query: 952 XXXPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALR 1011
+ T ++I+ ++ + + +I E+++Y P +
Sbjct: 1143 IKTLNPEHTRSQIAIVSQEPTLF--DCSIAENIIYGLD---PSSVTMAQVEEAARLANIH 1197
Query: 1012 NSLVGLP-------GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062
N + LP G G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1198 NFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257
Query: 1063 RTVRNTVDTGRTVVCTIHQ 1081
+ + GRT + H+
Sbjct: 1258 EAL-DRAREGRTCIVIAHR 1275
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 49/212 (23%)
Query: 176 LRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY 235
+R ++ ++EIL +S V+P + L+GP G GK+T++ L D + G +
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFI 1138
Query: 236 CGHELTEFVPQRT---CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292
G E+ P+ T A +SQ + ++ E + + G+ +A++ +
Sbjct: 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIY-----GLDPSSVTMAQVEEAAR 1192
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG-----ISG 347
A I + A++ G E R G +SG
Sbjct: 1193 LANIH--------------------------------NFIAELPEGFETRVGDRGTQLSG 1220
Query: 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSST 379
GQK+R+ LV K L +DE ++ LD+ +
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 48/207 (23%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+PS+ + IL ++ V + L+G G GK+T++ L D + G++T G
Sbjct: 425 YPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGV 480
Query: 239 ELT----EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
++ EF+ ++ A +SQ T+ E + + TR E++A +
Sbjct: 481 DVRDINLEFL-RKNVAVVSQEPALF-NCTIEENISLGKEGI---TREEMVAACKMANAEK 535
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG--ISGGQKKR 352
IK P +G T +VG+ RG +SGGQK+R
Sbjct: 536 FIKTLP-----------NGYNT-------------------LVGD---RGTQLSGGQKQR 562
Query: 353 VTTGEMLVGPAKALFMDEISTGLDSST 379
+ LV K L +DE ++ LD+ +
Sbjct: 563 IAIARALVRNPKILLLDEATSALDAES 589
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 15/196 (7%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXX 951
E+ S N +L+DV+ F G + +VG +G+GKTTL+ +LAG
Sbjct: 13 ELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG---LLAAAGEIFL 69
Query: 952 XXXPKKQETFARISGYCEQN-DIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKAL 1010
P + GY QN T+ E + +S L K L
Sbjct: 70 DGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFS----LEIMGLDESEMRKRIKKVL 125
Query: 1011 RNSLVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
LVGL G+ LS Q++RL IA L + + +DEP S LD + + + +
Sbjct: 126 --ELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVL 183
Query: 1066 RNTVDTGRTVVCTIHQ 1081
+ + G+ ++ H+
Sbjct: 184 ESLKNEGKGIILVTHE 199
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 48/255 (18%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
+L DV+ + ++ +++G GSGKTTLL+ L+G L +G + G F+ ++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG----LLAAAGEIFLDGSPADPFLLRK 81
Query: 248 TCAYISQHDLHH-GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
Y+ Q+ TV E + FS +G+ +E+ +R I +
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKR-----------IKKVL 125
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
+ +SGL AD + +SGGQK+R+ ML + L
Sbjct: 126 ELVGLSGLA----------------AADPL-------NLSGGQKQRLAIASMLARDTRFL 162
Query: 367 FMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426
+DE + LD + +I + + + + I L+ E D D I+ +S G I +
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESL---KNEGKGIILVTHELEYLDDMDFILHISNGTIDF 219
Query: 427 QGP-REYVLDFFESV 440
G E+V F+ V
Sbjct: 220 CGSWEEFVEREFDDV 234
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 30/212 (14%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVL-------AGRKTXXXXXXXXXXXXXPK 956
Q+L+D+S +P + A G SG GK+T+ +L AG T +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLY---------SAWLRLPKDXXXXXXXXXXXX 1007
Q G+ Q+ TI E+L Y W L D
Sbjct: 76 SQ------IGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVL--DLAFARSFVENMP 126
Query: 1008 KALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
L N+ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +
Sbjct: 127 DQL-NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-D 183
Query: 1068 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
++ GRT + H+ S I +A D+++ +++G
Sbjct: 184 SLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 12/188 (6%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 964
+ QD S + G +TALVG SG+GK+T++ +L + + R
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 965 S-GYCEQNDIHSPNVTIYESLLYSA--WLRLPKDXXXXXXXXXXXXKALRN------SLV 1015
G Q I + +I E++ Y A + + +RN ++V
Sbjct: 419 KIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
G GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV
Sbjct: 478 GEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 535
Query: 1076 VCTIHQPS 1083
+ H+ S
Sbjct: 536 LVIAHRLS 543
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 43/260 (16%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P++ ++ I D S + +T L+GP GSGK+T+L L D + SG ++ GH
Sbjct: 351 YPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGH 406
Query: 239 ELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
++ + P + +SQ + ++ E + + G + AE +R +
Sbjct: 407 DIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAY-----GADDPSSVTAEEIQRVAEVA 460
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
AF++ G T +G VL +SGGQK+R+
Sbjct: 461 -----NAVAFIRNFP-QGFNTVVGEKGVL--------------------LSGGQKQRIAI 494
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415
L+ K L +DE ++ LD+ + + + +++ V +I L T +
Sbjct: 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS----TIKNANM 550
Query: 416 IILLSEGEIVYQGPREYVLD 435
+ +L +G+I G E +L
Sbjct: 551 VAVLDQGKITEYGKHEELLS 570
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 33/255 (12%)
Query: 873 FQPLSLAFDHVNYFVDMPAEMKSQGIE---------ENRLQLLQDVSGAFRPGVLTALVG 923
FQ + +D N P E+K I+ +N +L+D++ + G A VG
Sbjct: 315 FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVG 374
Query: 924 VSGAGKTTLM-------DVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSP 976
+SG GK+TL+ DV +G+ + Q G +Q++I
Sbjct: 375 MSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ------IGLVQQDNILFS 428
Query: 977 NVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALR-----NSLVGLPGVDGLSTEQRKRL 1031
+ T+ E++L ++ + ++ VG GV LS Q++RL
Sbjct: 429 D-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRL 486
Query: 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1091
+IA + NP I+ +DE TS LD + +I+ + + + RT + H+ S I A D
Sbjct: 487 SIARIFLNNPPILILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLS-TITHA-D 543
Query: 1092 ELFLMKRGGHVIYAG 1106
++ +++ GH++ G
Sbjct: 544 KIVVIE-NGHIVETG 557
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 50/261 (19%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F + IL D++ ++ +G G GK+TL+ + D + SG++ GH
Sbjct: 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGH 403
Query: 239 ELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
+ +F+ + + Q ++ + TV+E + LG
Sbjct: 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENI-----LLG------------------- 438
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI--SGGQKKRV 353
+P + ++A M+ D+ I+ L D VG RG+ SGGQK+R+
Sbjct: 439 -RPTATDEEVVEAAKMAN-----AHDF---IMNLPQGYDTEVG---ERGVKLSGGQKQRL 486
Query: 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413
+ + + L +DE ++ LD + I++ ++ T+I++ T
Sbjct: 487 SIARIFLNNPPILILDEATSALDLESE-SIIQEALDVLSKDRTTLIVA---HRLSTITHA 542
Query: 414 DDIILLSEGEIVYQGP-REYV 433
D I+++ G IV G RE +
Sbjct: 543 DKIVVIENGHIVETGTHRELI 563
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 964
+ QD S + G +TALVG SG+GK+T++ +L + + R
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 965 S-GYCEQNDIHSPNVTIYESLLYSA--WLRLPKDXXXXXXXXXXXXKALRN------SLV 1015
G Q I + +I E++ Y A + + +RN ++V
Sbjct: 450 KIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
G GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV
Sbjct: 509 GEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 566
Query: 1076 VCTIHQPS 1083
+ H S
Sbjct: 567 LVIAHHLS 574
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 43/260 (16%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P++ ++ I D S + +T L+GP GSGK+T+L L D + SG ++ GH
Sbjct: 382 YPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGH 437
Query: 239 ELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
++ + P + +SQ + ++ E + + G + AE +R +
Sbjct: 438 DIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAY-----GADDPSSVTAEEIQRVAEVA 491
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
AF++ G T +G VL +SGGQK+R+
Sbjct: 492 -----NAVAFIR-NFPQGFNTVVGEKGVL--------------------LSGGQKQRIAI 525
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415
L+ K L +DE ++ LD+ + + + +++ V +I L T +
Sbjct: 526 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLS----TIKNANM 581
Query: 416 IILLSEGEIVYQGPREYVLD 435
+ +L +G+I G E +L
Sbjct: 582 VAVLDQGKITEYGKHEELLS 601
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 104/251 (41%), Gaps = 53/251 (21%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR- 247
L ++S V+ ++LGP G+GKT L+ ++G SGR+ G ++T+ P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
A++ Q+ M V++ L+F G R + + + R
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEF-------GMRMKKIKDPKRV----------------- 108
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG---ISGGQKKRVTTGEMLVGPAK 364
LD D+ + + + R +SGG+++RV LV K
Sbjct: 109 ---------------------LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424
L +DE + LD T + R M ++H + ++ + E + D I ++ +G++
Sbjct: 148 ILLLDEPLSALDPRTQ-ENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
Query: 425 VYQGPREYVLD 435
+ G E + +
Sbjct: 207 IQVGKPEEIFE 217
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 30/183 (16%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG----RKTXXXXXXXXXXXXXPKKQETF 961
L ++S G ++G +GAGKT ++++AG P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI- 74
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRL---PKDXXXXXXXXXXXXKALRNSLVGLP 1018
+ QN P++ + ++L + ++ PK RN L
Sbjct: 75 ----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT--- 127
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
LS +++R+ +A LV NP I+ +DEP S LD R T + R ++
Sbjct: 128 ----LSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQENAREMLSV 172
Query: 1079 IHQ 1081
+H+
Sbjct: 173 LHK 175
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 12/192 (6%)
Query: 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXX----XXXXXXXPKKQETFARISGYC 968
+ G L+G SG GKTT + ++AG + PK + Y
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93
Query: 969 EQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLSTEQ 1027
P++T+YE++ + ++ PKD + L P LS Q
Sbjct: 94 VW-----PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA--QLSGGQ 146
Query: 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1087
R+R+ +A +V P ++ MDEP S LDA+ + ++ + + ++
Sbjct: 147 RQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 206
Query: 1088 EAFDELFLMKRG 1099
D + +M RG
Sbjct: 207 TMGDRIAVMNRG 218
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 45/241 (18%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQ 254
+K +LLGP G GKTT L+ ++G + + GR+ + ++T P+ R + + Q
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQ 90
Query: 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGL 314
MTV E + F + +F P EID ++ A
Sbjct: 91 SYAVWPHMTVYENIAFPLKI----KKF----------------PKDEIDKRVRWAA---- 126
Query: 315 KTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTG 374
+L+I L N +SGGQ++RV +V L MDE +
Sbjct: 127 -------ELLQIEEL--------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 375 LDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG-PREYV 433
LD+ + ++++ VT I + E + D I +++ G+++ G P E
Sbjct: 172 LDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230
Query: 434 L 434
L
Sbjct: 231 L 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 10/191 (5%)
Query: 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXX---XXXXXXXPKKQETFARISGYCE 969
+ G L+G SG GKTT + ++AG + P K + +
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF---- 90
Query: 970 QNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLSTEQR 1028
Q+ P++T+YE++ + ++ PKD + L P LS QR
Sbjct: 91 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA--QLSGGQR 148
Query: 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1088
+R+ +A +V P ++ MDEP S LDA+ + ++ + + ++
Sbjct: 149 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT 208
Query: 1089 AFDELFLMKRG 1099
D + +M RG
Sbjct: 209 MGDRIAVMNRG 219
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 45/241 (18%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQ 254
+K +LLGP G GKTT L+ ++G + + GR+ + ++T P+ R + + Q
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQ 91
Query: 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGL 314
MTV E + F + +F P EID ++ A
Sbjct: 92 SYAVWPHMTVYENIAFPLKI----KKF----------------PKDEIDKRVRWAA---- 127
Query: 315 KTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTG 374
+L+I L N +SGGQ++RV +V L MDE +
Sbjct: 128 -------ELLQIEEL--------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 172
Query: 375 LDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG-PREYV 433
LD+ + ++++ VT I + E + D I +++ G+++ G P E
Sbjct: 173 LDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 231
Query: 434 L 434
L
Sbjct: 232 L 232
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTXXXX--XXXXXXXXXPKK 957
+++ + VS + G AL+G SG GKTT + +LAG + T PK
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLVG 1016
+E G QN P++T++E++ + R + KD + N L
Sbjct: 75 REV-----GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR 129
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
P LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 130 KP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 126/307 (41%), Gaps = 58/307 (18%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
K++ + VS VK LLGP G GKTT L L+G + SG + + + +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIP 71
Query: 245 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
P+ R + Q+ + MTV E + F R +RR
Sbjct: 72 PKYREVGMVFQNYALYPHMTVFENIAFPLR--------------ARR------------- 104
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG---ISGGQKKRVTTGEMLV 360
+ D V K + ++I +++ N + R +SGGQ++RV LV
Sbjct: 105 --------------ISKDEVEKRV-VEIARKLLIDNLLDRKPTQLSGGQQQRVALARALV 149
Query: 361 GPAKALFMDEISTGLDSSTTFQI---VRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
K L DE + LD++ + ++ ++Q + IT V + E + I
Sbjct: 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT----HDQAEAMTMASRIA 205
Query: 418 LLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYV 477
+ ++G++V G + V D +++ +FL++ + + +Q K+++ +
Sbjct: 206 VFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRDD--VII 263
Query: 478 SVPEFVE 484
+PE V+
Sbjct: 264 KLPEPVD 270
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGGQ++RV+ L L DE ++ LD +++R M+Q+ ++++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT--H 211
Query: 405 PAPETYDLFDDIILLSEGEIVYQGPREYV 433
+ +I L +G+I +G E V
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 52/248 (20%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE------FVP--QR 247
VK +LLGP G GKTT L+ ++G + S G++ Y G +L FVP R
Sbjct: 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQI-YIGDKLVADPEKGIFVPPKDR 81
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
A + Q + MTV + + F + V P EID ++
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKV--------------------PRQEIDQRVR 121
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A ++LGL +++ N R +SGGQ++RV G +V +
Sbjct: 122 EVA--------------ELLGL---TELL--NRKPRELSGGQRQRVALGRAIVRKPQVFL 162
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
MDE + LD+ ++ ++++ VT I + E + D I +++ G +
Sbjct: 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
Query: 428 GPREYVLD 435
G + V D
Sbjct: 222 GSPDEVYD 229
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------XXXXXXXXXXXXXPK 956
++++S + G L+G SG GKTT + ++AG + P
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLV 1015
K A + Q+ P++T+Y+++ + LR +P+ L L
Sbjct: 79 KDRDIAMVF----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1073
P LS QR+R+ + +V P + MDEP S LDA+ + MR + G
Sbjct: 135 RKP--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAELKKLQRQLGV 191
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRG 1099
T + H ++ D + +M RG
Sbjct: 192 TTIYVTHD-QVEAMTMGDRIAVMNRG 216
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 68/288 (23%), Positives = 120/288 (41%), Gaps = 57/288 (19%)
Query: 159 PTLLNTSLNAIEGVLGFLRL---FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTT- 214
P+ L T L+ +EG++ F + +P++ L +L ++ ++P +T L+GP GSGK+T
Sbjct: 2 PSGLLTPLH-LEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 215 --LLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 272
LLQ L + L + G+ +PQ Y LH V + G
Sbjct: 60 AALLQNLYQPTGGQLLLDGKP----------LPQYEHRY-----LHRQVAAVGQEPQVFG 104
Query: 273 RCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC 332
R L + G+ P ++ A SG + I GL
Sbjct: 105 RSLQENIAY-------------GLTQKPTMEEITAAAVKSGAHSF--------ISGLPQG 143
Query: 333 ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFM----- 387
D V +E +SGGQ++ V L+ L +D+ ++ LD+++ Q+ + +
Sbjct: 144 YDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPE 202
Query: 388 RQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLD 435
R + +T +SL++ A D I+ L G I G + +++
Sbjct: 203 RYSRSVLLITQHLSLVEQA-------DHILFLEGGAIREGGTHQQLME 243
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 14/205 (6%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 964
+LQ ++ RPG +TALVG +G+GK+T+ +L P+ + +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALRNSLVGLP-GVDG- 1022
+ ++ E++ Y L + + + GLP G D
Sbjct: 92 QVAAVGQEPQVFGRSLQENIAYG----LTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 147
Query: 1023 -------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + +
Sbjct: 148 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 207
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRGG 1100
V I Q + + E D + ++ G
Sbjct: 208 VLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 24/212 (11%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTXXXXXXXXXXXXXPKKQ 958
L VS + G ALVG SG+GK+T+ DV +G ++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALRNSLVGLP 1018
FA +S ++H N TI ++ Y+A ++ + + N GL
Sbjct: 419 --FALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 1019 GVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
V G LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNK 530
Query: 1074 TVVCTIHQPSI----DIFEAFDELFLMKRGGH 1101
TV+ H+ S D DE +++RG H
Sbjct: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 48/255 (18%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F + ++ L VS + + L+G GSGK+T+ + D SG + GH
Sbjct: 349 FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGH 405
Query: 239 ELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
++ ++ +R A +SQ ++H T+ + ++ G TR ++ E + R+ A
Sbjct: 406 DVRDYKLTNLRRHFALVSQ-NVHLFNDTIANNIAYAAE--GEYTREQI--EQAARQAHAM 460
Query: 296 --IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRV 353
I+ P+ GL T +G E +SGGQ++RV
Sbjct: 461 EFIENMPQ-----------GLDTVIG--------------------ENGTSLSGGQRQRV 489
Query: 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413
L+ A L +DE ++ LD+ + I + ++ V +I L T +
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL----STIEQA 545
Query: 414 DDIILLSEGEIVYQG 428
D+I+++ EGEI+ +G
Sbjct: 546 DEILVVDEGEIIERG 560
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 41/249 (16%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
+L V+ VKP + +LG GSGK+TL+ + D GRV V +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVE---------VDEL 405
Query: 248 TCAYISQHDLH-HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
+ DL H +ET+ FSG + L +DA D EI
Sbjct: 406 DVRTVKLKDLRGHISAVPQETVLFSG---------TIKENLKWGREDA---TDDEIVEAA 453
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
K + SL Y ++ R SGGQK+R++ LV K L
Sbjct: 454 KIAQIHDFIISLPEGYDSRV------------ERGGRNFSGGQKQRLSIARALVKKPKVL 501
Query: 367 FMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426
+D+ ++ +D T +I+ +++ T II+ Q P T L D I++L EG++
Sbjct: 502 ILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIIT--QKIP-TALLADKILVLHEGKVAG 557
Query: 427 QGPREYVLD 435
G + +L+
Sbjct: 558 FGTHKELLE 566
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA-------GRKTXXXXXXXXXXX 952
EN +L V+ + +PG L A++G +G+GK+TLM+++ GR
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR-----VEVDELDV 407
Query: 953 XXPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALRN 1012
K ++ IS ++ + S TI E+L W R +D + +
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSG--TIKENL---KWGR--EDATDDEIVEAAKIAQIHD 460
Query: 1013 SLVGLP---------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
++ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1081
LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 1082 PSIDIF 1087
++ F
Sbjct: 206 INVARF 211
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 49/244 (20%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L +V+ +K ++GP GSGK+T+L + G DK G V Y +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKP--TEGEV-YIDN---------- 66
Query: 249 CAYISQHDLHHGEMTV--RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
I +DL E+T R+ + F V +F L+ L+ E + E+
Sbjct: 67 ---IKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALE-------NVELPLIF 110
Query: 307 K-ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
K AMSG + LK+ L+ N +SGGQ++RV L
Sbjct: 111 KYRGAMSGEERRKRALECLKMAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF-----DDIILLS 420
+ D+ + LDS T +I++ ++++ T+++ T+D+ + II L
Sbjct: 167 ILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDINVARFGERIIYLK 219
Query: 421 EGEI 424
+GE+
Sbjct: 220 DGEV 223
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 8/225 (3%)
Query: 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISG 966
+D++ G VG SG GK+TL+ ++AG +T R G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM-NDTPPAERGVG 78
Query: 967 YCEQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLST 1025
Q+ P++++ E++ + L K+ L + L P LS
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSG 136
Query: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1083
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1084 IDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKI 1128
++ D++ ++ G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI--------VRFMRQMVHIT 394
+ +SGGQ++RV G LV +DE + LD++ Q+ R R M+++T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 395 DVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+ E L D I++L G + G
Sbjct: 192 HDQV---------EAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 8/225 (3%)
Query: 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISG 966
+D++ G VG SG GK+TL+ ++AG +T R G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM-NDTPPAERGVG 78
Query: 967 YCEQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLST 1025
Q+ P++++ E++ + L K+ L + L P LS
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSG 136
Query: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1083
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1084 IDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKI 1128
++ D++ ++ G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI--------VRFMRQMVHIT 394
+ +SGGQ++RV G LV +DE + LD++ Q+ R R M+++T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 395 DVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+ E L D I++L G + G
Sbjct: 192 HDQV---------EAMTLADKIVVLDAGRVAQVG 216
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 54/257 (21%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ- 246
+++DVS + M ++GP G+GK+TLL+ L+G S G G L + P+
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKA 82
Query: 247 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
RT A + Q+ +V E + GR G++ + A
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQM-GRAPYGGSQ--------------------DRQA 121
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG--- 361
+ A + DY R +SGG+++RV +L
Sbjct: 122 LQQVMAQTDCLALAQRDY--------------------RVLSGGEQQRVQLARVLAQLWQ 161
Query: 362 ---PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418
+ LF+DE ++ LD +R +RQ+ + + +L D I+L
Sbjct: 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRIML 220
Query: 419 LSEGEIVYQGPREYVLD 435
L++G++V G E VL+
Sbjct: 221 LAQGKLVACGTPEEVLN 237
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 1023 LSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 1075
LS +++R+ +A L P +F+DEPTS LD +R +R T V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG-RQSHKLVEYFEAVPGVPK 1127
C +H ++ A D + L+ +G V P + L ++++A GV +
Sbjct: 202 CCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSR 253
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938
L+ DVS G + A++G +GAGK+TL+ +L G
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 8/225 (3%)
Query: 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISG 966
+D++ G VG SG GK+TL+ ++AG +T R G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM-NDTPPAERGVG 78
Query: 967 YCEQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLST 1025
Q+ P++++ E++ + L K+ L + L P LS
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSG 136
Query: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1083
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1084 IDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKI 1128
++ D++ ++ G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI--------VRFMRQMVHIT 394
+ +SGGQ++RV G LV +D+ + LD++ Q+ R R M+++T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 395 DVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+ E L D I++L G + G
Sbjct: 192 HDQV---------EAMTLADKIVVLDAGRVAQVG 216
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 48/265 (18%)
Query: 175 FLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVT 234
F R P +K+ LE +VS ++ L+ G GSGK+TLLQ ++G + + SG V
Sbjct: 12 FHRGTPLEKKALE---NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVL 65
Query: 235 YCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
Y G + +R Q+ E F+ R + E++ K+
Sbjct: 66 YDGERKKGYEIRRNIGIAFQYP---------EDQFFAER---------VFDEVAFAVKNF 107
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
DP + KA GL D V L SGG+K+RV
Sbjct: 108 YPDRDP-VPLVKKAMEFVGLDFDSFKDRVPFFL------------------SGGEKRRVA 148
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414
++V L +DE GLD ++R + + + ++IS + D
Sbjct: 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVD 206
Query: 415 DIILLSEGEIVYQGPREYVLDFFES 439
+++L +G+ V+ G R ++F E
Sbjct: 207 RVVVLEKGKKVFDGTR---MEFLEK 228
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 1083 SIDIFEAFDELFLMKRGGHV 1102
+ D + ++++G V
Sbjct: 199 ET-VINHVDRVVVLEKGKKV 217
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 48/265 (18%)
Query: 175 FLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVT 234
F R P +K+ LE +VS ++ L+ G GSGK+TLLQ ++G + + SG V
Sbjct: 14 FHRGTPLEKKALE---NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVL 67
Query: 235 YCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
Y G + +R Q+ E F+ R + E++ K+
Sbjct: 68 YDGERKKGYEIRRNIGIAFQYP---------EDQFFAER---------VFDEVAFAVKNF 109
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
DP + KA GL D V L SGG+K+RV
Sbjct: 110 YPDRDP-VPLVKKAMEFVGLDFDSFKDRVPFFL------------------SGGEKRRVA 150
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414
++V L +DE GLD ++R + + + ++IS + D
Sbjct: 151 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVD 208
Query: 415 DIILLSEGEIVYQGPREYVLDFFES 439
+++L +G+ V+ G R ++F E
Sbjct: 209 RVVVLEKGKKVFDGTR---MEFLEK 230
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 1083 SIDIFEAFDELFLMKRGGHV 1102
+ D + ++++G V
Sbjct: 201 ET-VINHVDRVVVLEKGKKV 219
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1081
LS Q++R+ IA L NP II DEPT LD++ + + ++ + G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
Query: 1082 PSIDIF 1087
++ F
Sbjct: 206 INVARF 211
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT 397
N +SGGQ++RV L + DE + LDS T +I + ++++ T
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKT 198
Query: 398 MIISLLQPAPETYDLF-----DDIILLSEGEI 424
+++ T+D+ + II L +GE+
Sbjct: 199 VVVV-------THDINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1081
LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 1082 PSIDIF 1087
++ F
Sbjct: 206 INVARF 211
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 49/244 (20%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L +V+ +K ++GP GSGK+T+L + G DK G V Y +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKP--TEGEV-YIDN---------- 66
Query: 249 CAYISQHDLHHGEMTV--RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
I +DL E+T R+ + F V +F L+ L+ E + E+
Sbjct: 67 ---IKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALE-------NVELPLIF 110
Query: 307 K-ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
K AMSG + LK+ L+ N +SGGQ++RV L
Sbjct: 111 KYRGAMSGEERRKRALECLKMAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF-----DDIILLS 420
+ D+ + LDS T +I++ ++++ T+++ T+D+ + II L
Sbjct: 167 ILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDINVARFGERIIYLK 219
Query: 421 EGEI 424
+GE+
Sbjct: 220 DGEV 223
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 104/251 (41%), Gaps = 37/251 (14%)
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236
++F R ++ L++VS V ++ ++G G+GK+TL++ ++ + G V
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVD 65
Query: 237 GHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
G ELT +S+ +L + G F+ LS R +
Sbjct: 66 GQELT---------TLSESELTKARRQI-------------GMIFQHFNLLSSRTVFGNV 103
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
E+D K + +L ++GL D N +SGGQK+RV
Sbjct: 104 ALPLELDNTPKDEVKRRVTE------LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIA 152
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416
L K L DE ++ LD +TT I+ ++ + +T+++ + + D +
Sbjct: 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCV 211
Query: 417 ILLSEGEIVYQ 427
++S GE++ Q
Sbjct: 212 AVISNGELIEQ 222
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 38/245 (15%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+++L ++ + P ++T L+GP GSGK+T+ L + G+V G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQY- 86
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA-GIKPDPEID 303
H LH V + GR S RE A G+ P ++
Sbjct: 87 --------DHHYLHTQVAAVGQEPLLFGR--------------SFRENIAYGLTRTPTME 124
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
SG D+ I G D VG E +SGGQ++ V L+
Sbjct: 125 EITAVAMESGAH-----DF---ISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKP 175
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+ L +D+ ++ LD+ ++ R + + T+++ Q + + I+ L EG
Sbjct: 176 RLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAERAHHILFLKEGS 233
Query: 424 IVYQG 428
+ QG
Sbjct: 234 VCEQG 238
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 45/230 (19%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA 962
+Q+LQ ++ PG +TALVG +G+GK+T+ +L + P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ---- 85
Query: 963 RISGYCEQNDIHSPNVTI-YESLLYSAWLR------LPKDXXXXXXXXXXXXKALRNSLV 1015
+ + +H+ + E LL+ R L + + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 1016 GLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
G P G TE QR+ + +A L+ P ++ +D+ TS LDA V R
Sbjct: 141 GFP--QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRL 198
Query: 1065 VRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1100
+ + + RTV+ HQ S+ + E L LM+RGG
Sbjct: 199 LYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 45/272 (16%)
Query: 166 LNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225
L + G + F ++ S +K +L D++ +KP + L+GP GSGKTT++ L D
Sbjct: 348 LREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407
Query: 226 SLRVSGRVTYCGHELTEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFEL 283
G++ G ++ + R+ I D TV+E L + G E
Sbjct: 408 D---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP----GATDEE 460
Query: 284 LAELSR-REKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342
+ E ++ D IK PE G + VL G D
Sbjct: 461 IKEAAKLTHSDHFIKHLPE-----------------GYETVLTDNGED------------ 491
Query: 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL 402
+S GQ++ + + K L +DE ++ +D+ T I M +++ ++II+
Sbjct: 492 --LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAH 548
Query: 403 LQPAPETYDLFDDIILLSEGEIVYQGPREYVL 434
+ DL II+L +GEIV G + ++
Sbjct: 549 RLNTIKNADL---IIVLRDGEIVEMGKHDELI 577
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 8/220 (3%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 964
+L+D++ +PG ALVG +G+GKTT++++L K + + R
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXX--XKALRNSLVGLPGVDG 1022
S D + T+ E+L Y ++ K L + +G
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489
Query: 1023 --LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
LS QR+ L I +ANP I+ +DE TS +D + + + ++ G+T + H
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAH 548
Query: 1081 QPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFE 1120
+ ++ + D L ++ R G ++ G K Y+E
Sbjct: 549 R--LNTIKNAD-LIIVLRDGEIVEMGKHDELIQKRGFYYE 585
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 38/245 (15%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+++L ++ + P ++T L+GP GSGK+T+ L + G+V G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQY- 86
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA-GIKPDPEID 303
H LH V + GR S RE A G+ P ++
Sbjct: 87 --------DHHYLHTQVAAVGQEPLLFGR--------------SFRENIAYGLTRTPTME 124
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
SG D+ I G D VG E +SGGQ++ V L+
Sbjct: 125 EITAVAMESGAH-----DF---ISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKP 175
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+ L +D ++ LD+ ++ R + + T+++ Q + + I+ L EG
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGS 233
Query: 424 IVYQG 428
+ QG
Sbjct: 234 VCEQG 238
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 45/230 (19%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA 962
+Q+LQ ++ PG +TALVG +G+GK+T+ +L + P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ---- 85
Query: 963 RISGYCEQNDIHSPNVTI-YESLLYSAWLR------LPKDXXXXXXXXXXXXKALRNSLV 1015
+ + +H+ + E LL+ R L + + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 1016 GLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
G P G TE QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 141 GFP--QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 1065 VRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1100
+ + + RTV+ Q S+ + E L LM+RGG
Sbjct: 199 LYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 37/251 (14%)
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236
++F R ++ L++VS V ++ ++G G+GK+TL++ ++ + G V
Sbjct: 32 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVD 88
Query: 237 GHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
G ELT L E+T +G F+ LS R +
Sbjct: 89 GQELTT--------------LSESELTKARR--------QIGXIFQHFNLLSSRTVFGNV 126
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
E+D K + +L ++GL D N +SGGQK+RV
Sbjct: 127 ALPLELDNTPKDEVKRRVTE------LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIA 175
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416
L K L D+ ++ LD +TT I+ ++ + +T+++ + + D +
Sbjct: 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-ITHEXDVVKRICDCV 234
Query: 417 ILLSEGEIVYQ 427
++S GE++ Q
Sbjct: 235 AVISNGELIEQ 245
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXX---------XXXXXXXXXXXPK 956
++D+S + G L+G SG GKTT + +AG + P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDXXXXXXXXXXXXKALRNSLV 1015
K+ A + Q+ P+ T+Y+++ + LR +PK L L
Sbjct: 82 KERDVAXVF----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLN 137
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 138 RKP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 52/244 (21%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE------ 242
+ D+S +K +LLGP G GKTT L+ ++G + + G++ Y L
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPT---RGQI-YIEDNLVADPEKGV 77
Query: 243 FVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
FVP +R A + Q + TV + + F + V P
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKV--------------------PKQ 117
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
EID ++ A LG +L N R +SGGQ++RV G ++
Sbjct: 118 EIDKRVREVA-----EXLGLTELL--------------NRKPRELSGGQRQRVALGRAII 158
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420
K DE + LD+ + ++++ VT I + E D I + +
Sbjct: 159 RRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY-VTHDQVEAXTXGDRIAVXN 217
Query: 421 EGEI 424
+GE+
Sbjct: 218 KGEL 221
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 916 GVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHS 975
G ALVG +G+GK+T+ +L + + I G Q+ I
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF 105
Query: 976 PNVTIYESLLYSAWLRLPKDXXXXXXXXXXXX--KALR---NSLVGLPGVDGLSTEQRKR 1030
N TI ++LY ++ +AL +++VG G+ LS +R+R
Sbjct: 106 -NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK-LSGGERQR 163
Query: 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1090
+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ S +
Sbjct: 164 IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS--TISSA 220
Query: 1091 DELFLMKRG 1099
+ + L+ +G
Sbjct: 221 ESIILLNKG 229
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 334 DIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTF---QIVRFMRQM 390
D +VGN+ + +SGG+++R+ L+ K + DE ++ LDS T + + V +R+
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 391 VHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVL 434
+ + +S + A + IILL++G+IV +G + +L
Sbjct: 205 RTLIIIAHRLSTISSA-------ESIILLNKGKIVEKGTHKDLL 241
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 44/259 (16%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F R++ L +++ + + L+G GSGK+T+ ++ D G + GH
Sbjct: 349 FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGH 405
Query: 239 ELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
+L E+ + A +SQ ++H TV + ++ R E E SR + +
Sbjct: 406 DLREYTLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE---EYSREQIEEA 453
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
+ +D K +GL T +G + VL +SGGQ++R+
Sbjct: 454 ARMAYAMDFINKMD--NGLDTIIGENGVL--------------------LSGGQRQRIAI 491
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415
L+ + L +DE ++ LD+ + I + ++ +I L T + D+
Sbjct: 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEQADE 547
Query: 416 IILLSEGEIVYQGPREYVL 434
I+++ +G IV +G +L
Sbjct: 548 IVVVEDGIIVERGTHSELL 566
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 18/204 (8%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 965
L++++ G ALVG SG+GK+T+ ++ + ++ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLR 416
Query: 966 GYCE--QNDIHSPNVTIYESLLYS---AWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGV 1020
++H N T+ ++ Y+ + R + + N L + G
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 1021 DG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTV 1075
+G LS QR+R+ IA L+ + I+ +DE TS LD + R ++ +D RT
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTS 532
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRG 1099
+ H+ S E DE+ +++ G
Sbjct: 533 LVIAHRLS--TIEQADEIVVVEDG 554
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 37/251 (14%)
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236
++F R ++ L++VS V ++ ++G G+GK+TL++ ++ + G V
Sbjct: 32 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVD 88
Query: 237 GHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
G ELT L E+T +G F+ LS R +
Sbjct: 89 GQELTT--------------LSESELTKARR--------QIGMIFQHFNLLSSRTVFGNV 126
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
E+D K + +L ++GL D N +SGGQK+RV
Sbjct: 127 ALPLELDNTPKDEVKRRVTE------LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIA 175
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416
L K L D+ ++ LD +TT I+ ++ + +T+++ + + D +
Sbjct: 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCV 234
Query: 417 ILLSEGEIVYQ 427
++S GE++ Q
Sbjct: 235 AVISNGELIEQ 245
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 10/185 (5%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA--GRKTXXXXXXXXXXXXXPKKQETF 961
++L+ +S + + G +++G SG+GK+TL+ +L T ++E
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 962 A---RISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKDXXXXXXXXXXXXKALRNSLVG 1016
R G+ Q P +T E+++ L++ PK L + L
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
P LS +++R+ IA L P ++F DEPT LD+ VM + G ++V
Sbjct: 137 KPY--ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
Query: 1077 CTIHQ 1081
H+
Sbjct: 195 MVTHE 199
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 46/246 (18%)
Query: 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF 243
R EIL +S VK ++G GSGK+TLL L G D G+V G E+
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVD-- 69
Query: 244 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFE-LLAELSRREKDAGIKPDPEI 302
Y ++ +L R LG +F L+ EL+ E I P ++
Sbjct: 70 -------YTNEKELSL----------LRNRKLGFVFQFHYLIPELTALENV--IVPMLKM 110
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG---ISGGQKKRVTTGEML 359
K G +Y+L LGL G+++ R +SGG+++RV L
Sbjct: 111 GKPKKEAKERG-------EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARAL 155
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419
LF DE + LDS+ T R M + I + I ++ E +L + +
Sbjct: 156 ANEPILLFADEPTGNLDSANT---KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEM 212
Query: 420 SEGEIV 425
+G++V
Sbjct: 213 KDGKVV 218
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 47/268 (17%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL V+ +V + L+GP G+GK+TL + L+G + ++ G + G + E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDE 76
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
++ L + + ++ G + R L A+L R + G+
Sbjct: 77 R----ARKGLF---LAFQYPVEVPGVTIANFLRLALQAKLGR---EVGV----------- 115
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
A + +K +L ++L D + + + G SGG+KKR ++LV
Sbjct: 116 AEFWTKVKKAL------ELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166
Query: 368 MDEISTGLDSSTTFQIVRFMRQM-------VHITDVTMIISLLQPAPETYDLFDDIILLS 420
+DE +GLD + R + M + IT I++ +QP D + ++
Sbjct: 167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHVMM 218
Query: 421 EGEIVYQGPREYVLDFFESVGFRCPERK 448
+G +V G E L+ E+ G+ + K
Sbjct: 219 DGRVVATGGPELALE-LEAKGYEWLKEK 245
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 82/214 (38%), Gaps = 14/214 (6%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG------RKTXXXXXXXXXXXXXPKKQ 958
+L+ V+ G + AL+G +GAGK+TL +LAG + P ++
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALR-----NS 1013
+ Q + P VTI L + +L ++ KAL S
Sbjct: 78 ARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVK-KALELLDWDES 134
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
+ +G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ H I + D++ +M G V GP
Sbjct: 195 GALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIH 1080
LS QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T H
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 1081 QPSIDIFEAFDELFLMKRG 1099
QP+ + A L L K+
Sbjct: 188 QPNQVVAIANKTLLLNKQN 206
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/85 (18%), Positives = 38/85 (44%)
Query: 321 DYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 380
DY + + LD + +SGGQ++ + + K + +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 381 FQIVRFMRQMVHITDVTMIISLLQP 405
++ + + ++T++ + QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+ H
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH-- 216
Query: 1083 SIDIFEAFDELFLMKRGGHVIYAGP 1107
+ + + ++ HV+Y P
Sbjct: 217 DLAVLDYLSDII------HVVYGEP 235
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 116/294 (39%), Gaps = 71/294 (24%)
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
G +K + ++GP G GKTT ++ L+G + + G++ + T AY
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPT---EGKIEW----------DLTVAYKP 353
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
Q+ D+ G T +ELL++ IDA S
Sbjct: 354 QYI----------KADYEG------TVYELLSK---------------IDA-------SK 375
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
L ++ +LK LG+ D V NE+ SGG+ +RV L+ A +DE S
Sbjct: 376 LNSNFYKTELLKPLGIIDLYDREV-NEL----SGGELQRVAIAATLLRDADIYLLDEPSA 430
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE-------IVY 426
LD + R +R + + T ++ ++ D D + + EGE +
Sbjct: 431 YLDVEQRLAVSRAIRHLXEKNEKTALV--VEHDVLXIDYVSDRLXVFEGEPGKYGRALPP 488
Query: 427 QGPREYVLDFFESVG--FRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVS 478
G RE F S+G FR G +E S KD++Q K+ Y Y++
Sbjct: 489 XGXREGXNRFLASIGITFRRDPDTGRPRANKE-GSVKDREQ---KEKGEYYYIA 538
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 109/260 (41%), Gaps = 44/260 (16%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F R + L +++ + + L+G GSGK+T+ ++ D G + GH
Sbjct: 349 FTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGEILMDGH 405
Query: 239 ELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
+L E+ + A +SQ ++H TV + ++ R E + SR + +
Sbjct: 406 DLREYTLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE---QYSREQIEEA 453
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
+ +D K +GL T +G + VL +SGGQ++R+
Sbjct: 454 ARMAYAMDFINKMD--NGLDTVIGENGVL--------------------LSGGQRQRIAI 491
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415
L+ + L +DE ++ LD+ + I + ++ +I L T + D+
Sbjct: 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEKADE 547
Query: 416 IILLSEGEIVYQGPREYVLD 435
I+++ +G IV +G +L+
Sbjct: 548 IVVVEDGVIVERGTHNDLLE 567
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 12/201 (5%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 965
L++++ G ALVG SG+GK+T+ ++ + ++ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 966 GYCE--QNDIHSPNVTIYESLLYS---AWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGV 1020
++H N T+ ++ Y+ + R + + N L + G
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476
Query: 1021 DG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
+G LS QR+R+ IA L+ + I+ +DE TS LD + + + + + RT +
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVI 535
Query: 1079 IHQPSIDIFEAFDELFLMKRG 1099
H+ S E DE+ +++ G
Sbjct: 536 AHRLS--TIEKADEIVVVEDG 554
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 86/239 (35%), Gaps = 70/239 (29%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA-- 962
+L D+S + PG + ++G SG GKTTL+ LAG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 963 -RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGVD 1021
R GY Q + P++T+Y ++ Y GL
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAY-----------------------------GLGNGK 109
Query: 1022 GLSTEQRKRLTIAVELVA----------------------------NPSIIFMDEPTSGL 1053
G + ++R+R+ +EL +P +I +DEP S L
Sbjct: 110 GRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSAL 169
Query: 1054 DARAAAIVMRTVRNTV-----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
D + + R +R + G++ V H + + D + +MK+G + A P
Sbjct: 170 DEQ----LRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASP 223
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGHELTEFV 244
+L+D+S + P + ++G G GKTTLL+ L+G + +SG+ + V
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS-KNTNLPV 77
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFS-----GRCLGVGTRFELLAELSRREKDAGIKP 298
+R Y+ Q + +TV + + GR R E + EL+ + AG P
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP 136
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
++L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG------- 237
K EIL +S ++ + L+GP G+GKTT L+ +S S SG VT G
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83
Query: 238 HE---LTEFVPQRTCAYISQHDLHH 259
HE L ++P+ AY + + +
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEY 108
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 91/249 (36%), Gaps = 34/249 (13%)
Query: 873 FQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQL------LQDVSGAFRPGVLTALVGVSG 926
F+P + F ++ VD+ E +E RL L+ G R G + +VG +G
Sbjct: 336 FRPYEIRFTKLSERVDVERETL---VEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNG 392
Query: 927 AGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTIYESLLY 986
GKTT + +LAG + K Q A G T+YE L
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG------------TVYELLSK 440
Query: 987 SAWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1046
+L + L + V+ LS + +R+ IA L+ + I +
Sbjct: 441 IDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRDADIYLL 495
Query: 1047 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
DEP++ LD V R +R+ ++ + + I D L +++ G
Sbjct: 496 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL--------IVFEG 547
Query: 1107 PLGRQSHKL 1115
GR L
Sbjct: 548 EPGRHGRAL 556
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+ H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH-- 286
Query: 1083 SIDIFEAFDELFLMKRGGHVIYAGP 1107
+ + + ++ HV+Y P
Sbjct: 287 DLAVLDYLSDVI------HVVYGEP 305
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 68/281 (24%)
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
G ++ + ++GP G GKTT ++ L+G + + G+V + T AY
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKP 423
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
Q+ E GT +ELL++ ID+ S
Sbjct: 424 QYIKAEYE----------------GTVYELLSK---------------IDS-------SK 445
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
L ++ +LK LG+ D V + +SGG+ +RV L+ A +DE S
Sbjct: 446 LNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSA 500
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE-------IVY 426
LD + R +R ++ + T ++ ++ D D +++ EGE +
Sbjct: 501 YLDVEQRLAVSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPGRHGRALPP 558
Query: 427 QGPREYVLDFFESVG--FRCPERKGAADFLQEVTSRKDQQQ 465
G RE + F SVG FR G +E S KD++Q
Sbjct: 559 MGMREGMNRFLASVGITFRRDPDSGRPRANKE-GSVKDREQ 598
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGG+ +RV L+ A F DE S+ LD ++ R +R++ + +++ +
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV---E 285
Query: 405 PAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPE--RKGAADFLQ 455
D D+I +VY P Y + F P+ R G +FLQ
Sbjct: 286 HDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 326
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 25/209 (11%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTXXXXXXXXXXXXXPK 956
+ LQDVS PG ALVG SGAGK+T++ D+ +G
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG------CIRIDGQDISQV 121
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALR----- 1011
Q + G Q+ + N TI +++ Y + D A+
Sbjct: 122 TQASLRSHIGVVPQDTVLF-NDTIADNIRY-GRVTAGNDEVEAAAQAAGIHDAIMAFPEG 179
Query: 1012 -NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070
+ VG G+ LS +++R+ IA ++ P II +DE TS LD + ++ V
Sbjct: 180 YRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VC 237
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
RT + H+ S + D++ ++K G
Sbjct: 238 ANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 65/261 (24%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE---- 242
E L DVS V P + L+GP G+GK+T+L+ L D S SG + G ++++
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124
Query: 243 -------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
VPQ T + T+ + + + GR E A+ AG
Sbjct: 125 SLRSHIGVVPQDTVLFND---------TIADNIRY-GRVTAGNDEVEAAAQA------AG 168
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG--ISGGQKKRV 353
I DA M G +T +G RG +SGG+K+RV
Sbjct: 169 IH-----DAIMAFP--EGYRTQVG----------------------ERGLKLSGGEKQRV 199
Query: 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413
++ + +DE ++ LD+S I + ++ ++ L T
Sbjct: 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL----STVVNA 255
Query: 414 DDIILLSEGEIVYQGPREYVL 434
D I+++ +G IV +G E +L
Sbjct: 256 DQILVIKDGCIVERGRHEALL 276
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 91/249 (36%), Gaps = 34/249 (13%)
Query: 873 FQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQL------LQDVSGAFRPGVLTALVGVSG 926
F+P + F ++ VD+ E +E RL L+ G R G + +VG +G
Sbjct: 322 FRPYEIRFTKLSERVDVERETL---VEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNG 378
Query: 927 AGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTIYESLLY 986
GKTT + +LAG + K Q A G T+YE L
Sbjct: 379 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG------------TVYELLSK 426
Query: 987 SAWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1046
+L + L + V+ LS + +R+ IA L+ + I +
Sbjct: 427 IDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRDADIYLL 481
Query: 1047 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
DEP++ LD V R +R+ ++ + + I D L +++ G
Sbjct: 482 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL--------IVFEG 533
Query: 1107 PLGRQSHKL 1115
GR L
Sbjct: 534 EPGRHGRAL 542
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+ H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH-- 272
Query: 1083 SIDIFEAFDELFLMKRGGHVIYAGP 1107
+ + + ++ HV+Y P
Sbjct: 273 DLAVLDYLSDVI------HVVYGEP 291
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 68/281 (24%)
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
G ++ + ++GP G GKTT ++ L+G + + G+V + T AY
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKP 409
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
Q+ E GT +ELL++ ID+ S
Sbjct: 410 QYIKAEYE----------------GTVYELLSK---------------IDS-------SK 431
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
L ++ +LK LG+ D V + +SGG+ +RV L+ A +DE S
Sbjct: 432 LNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSA 486
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE-------IVY 426
LD + R +R ++ + T ++ ++ D D +++ EGE +
Sbjct: 487 YLDVEQRLAVSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPGRHGRALPP 544
Query: 427 QGPREYVLDFFESVG--FRCPERKGAADFLQEVTSRKDQQQ 465
G RE + F SVG FR G +E S KD++Q
Sbjct: 545 MGMREGMNRFLASVGITFRRDPDSGRPRANKE-GSVKDREQ 584
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGG+ +RV L+ A F DE S+ LD ++ R +R++ + +++ +
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV---E 271
Query: 405 PAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPE--RKGAADFLQ 455
D D+I +VY P Y + F P+ R G +FLQ
Sbjct: 272 HDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 312
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 47/199 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +S V P + ++GP GSGK+TL L+G+ D + G V + G +L P+
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPE- 73
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
D +G G+ F+ E+ G+ + F
Sbjct: 74 ---------------------DRAGE--GIFMAFQYPVEI------PGVS-----NQFFL 99
Query: 308 ATAMSGLKTSLGTDYV----------LKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
TA++ +++ G + + KI L + D++ + G SGG+KKR +
Sbjct: 100 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT-RSVNVGFSGGEKKRNDILQ 158
Query: 358 MLVGPAKALFMDEISTGLD 376
M V + +DE +GLD
Sbjct: 159 MAVLEPELCILDESDSGLD 177
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
G S ++KR I V P + +DE SGLD A +V V + D R+ + H
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
Query: 1082 PSI 1084
I
Sbjct: 205 QRI 207
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940
+L+ +S PG + A++G +G+GK+TL LAGR+
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 51
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 921 LVGVSGAGKTTLMDVLAG-RKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVT 979
L+G +GAGK+ ++++AG K P E R G+ Q+ P+++
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER--RGIGFVPQDYALFPHLS 86
Query: 980 IYESLLYSAWLRLPKDXXXXXXXXXXXXK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELV 1038
+Y ++ Y LR + K + + L P LS +R+R+ +A LV
Sbjct: 87 VYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPA--RLSGGERQRVALARALV 142
Query: 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
P ++ +DEP S +D + ++M +R
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGG+++RV LV + L +DE + +D T ++ +R + DV I+ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTH 185
Query: 405 PAPETYDLFDDIILLSEGEIVYQG 428
E L D++ ++ G IV +G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 203 LLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQR 247
+LLGP G+GK+ L+ ++G K D+ G V G ++T P+R
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDR-----GEVRLNGADITPLPPER 69
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 47/199 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +S V P + ++GP GSGK+TL L+G+ D + G V + G +L P+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPE- 92
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
D +G G+ F+ E+ G+ + F
Sbjct: 93 ---------------------DRAGE--GIFMAFQYPVEI------PGVS-----NQFFL 118
Query: 308 ATAMSGLKTSLGTDYV----------LKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
TA++ +++ G + + KI L + D++ + G SGG+KKR +
Sbjct: 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT-RSVNVGFSGGEKKRNDILQ 177
Query: 358 MLVGPAKALFMDEISTGLD 376
M V + +DE +GLD
Sbjct: 178 MAVLEPELCILDESDSGLD 196
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
G S ++KR I V P + +DE SGLD A +V V + D R+ + H
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940
+L+ +S PG + A++G +G+GK+TL LAGR+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 21/211 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ------- 958
L VS + G +T ++G +G+GK+TL++V+ G K+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 959 ---ETFARISGYCEQNDIHS-------PNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXK 1008
TF E + + P + SL Y W+ PK+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI--PKEEEMVEKAFKIL-E 139
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
L+ S + LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
G T + H+ I + D L++M G
Sbjct: 200 KAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQ 246
L VS V +TL++GP GSGK+TL+ ++G K+D+ GRV + ++T P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE-----GRVYFENKDITNKEPA 77
Query: 247 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
Y Q EMTV E L C G L + +++ ++ +I
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
F+K + + K +SGGQ K V G L+
Sbjct: 138 LEFLKLSHLYDRKAG--------------------------ELSGGQMKLVEIGRALMTN 171
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQM 390
K + MDE G+ I + ++
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 7/193 (3%)
Query: 888 DMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTXXXXX 946
D+ E++S + + ++ + G + L+G +GAGKTT + +AG +
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 947 XXXXXXXXPKKQETFAR--ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXX-X 1003
K R I+ E I P +T+YE+L A+ R K+
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIF-PELTVYENLXXGAYNRKDKEGIKRDLEWI 122
Query: 1004 XXXXKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
L+ L L G LS +++ L I L + P ++ DEP+ GL + V
Sbjct: 123 FSLFPRLKERLKQLGGT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFE 180
Query: 1064 TVRNTVDTGRTVV 1076
++ G T++
Sbjct: 181 VIQKINQEGTTIL 193
Score = 38.5 bits (88), Expect = 0.031, Method: Composition-based stats.
Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 61/259 (23%)
Query: 189 LHDVSGI---VKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELT-- 241
+H + GI V ++ L+G G+GKTT L A++G ++ K G++ + G ++T
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK-----GKIIFNGQDITNK 73
Query: 242 --EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
+ + A + + E+TV E L +R++K+ GIK D
Sbjct: 74 PAHVINRXGIALVPEGRRIFPELTVYENL--------------XXGAYNRKDKE-GIKRD 118
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
E + LK GT +SGG+++ + G L
Sbjct: 119 LEWIFSLFPRLKERLKQLGGT------------------------LSGGEQQXLAIGRAL 154
Query: 360 VGPAKALFMDEISTGLDS---STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416
K L DE S GL S F++++ + Q + T I+ + Q A +
Sbjct: 155 XSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ-----EGTTILLVEQNALGALKVAHYG 209
Query: 417 ILLSEGEIVYQGPREYVLD 435
+L G+IV +G +LD
Sbjct: 210 YVLETGQIVLEGKASELLD 228
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 38/245 (15%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+++L ++ + P ++T L+GP GSGK+T+ L + G+V G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQY- 86
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA-GIKPDPEID 303
H LH V + GR S RE A G+ P ++
Sbjct: 87 --------DHHYLHTQVAAVGQEPLLFGR--------------SFRENIAYGLTRTPTME 124
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
SG D+ I G D VG E ++ GQ++ V L+
Sbjct: 125 EITAVAMESGAH-----DF---ISGFPQGYDTEVG-ETGNQLAVGQRQAVALARALIRKP 175
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+ L +D ++ LD+ ++ R + + T+++ Q + + I+ L EG
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGS 233
Query: 424 IVYQG 428
+ QG
Sbjct: 234 VCEQG 238
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 45/230 (19%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA 962
+Q+LQ ++ PG +TALVG +G+GK+T+ +L + P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ---- 85
Query: 963 RISGYCEQNDIHSPNVTI-YESLLYSAWLR------LPKDXXXXXXXXXXXXKALRNSLV 1015
+ + +H+ + E LL+ R L + + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 1016 GLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
G P G TE QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 141 GFP--QGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 1065 VRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1100
+ + + RTV+ Q S+ + E L LM+RGG
Sbjct: 199 LYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 21/211 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ------- 958
L VS + G +T ++G +G+GK+TL++V+ G K+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 959 ---ETFARISGYCEQNDIHS-------PNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXK 1008
TF E + + P + SL Y W+ PK+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI--PKEEEMVEKAFKIL-E 139
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
L+ S + LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
G T + H+ I + D L++M G
Sbjct: 200 KAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQ 246
L VS V +TL++GP GSGK+TL+ ++G K+D+ GRV + ++T P
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADE-----GRVYFENKDITNKEPA 77
Query: 247 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
Y Q EMTV E L L+ E++ E P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLN 116
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
F K + +L+ L L D G +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQM 390
K + MDE G+ I + ++
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 21/211 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ------- 958
L VS + G +T ++G +G+GK+TL++V+ G K+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 959 ---ETFARISGYCEQNDIHS-------PNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXK 1008
TF E + + P + SL Y W+ PK+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI--PKEEEMVEKAFKIL-E 139
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
L+ S + LS Q K + I L+ NP +I MD+P +G+ A + V
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLEL 199
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
G T + H+ I + D L++M G
Sbjct: 200 KAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQ 246
L VS V +TL++GP GSGK+TL+ ++G K+D+ GRV + ++T P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE-----GRVYFENKDITNKEPA 77
Query: 247 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
Y Q EMTV E L L+ E++ E P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLN 116
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
F K + +L+ L L D G +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQM 390
K + MD+ G+ I + ++
Sbjct: 172 PKMIVMDQPIAGVAPGLAHDIFNHVLEL 199
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 24/189 (12%)
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQN-- 971
RPG + LVG +G GK+T + +LAG++ P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP----PEWQEIIKYFRGSELQNYF 156
Query: 972 ------DIHS----------PNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALRNSLV 1015
DI + P L+L + L N L
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
++ LS + +R I + V + DEP+S LD + + +R+ + + V
Sbjct: 217 R--DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274
Query: 1076 VCTIHQPSI 1084
+C H S+
Sbjct: 275 ICVEHDLSV 283
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 35.0 bits (79), Expect = 0.34, Method: Composition-based stats.
Identities = 56/262 (21%), Positives = 97/262 (37%), Gaps = 51/262 (19%)
Query: 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQ-------ALSGKSDKSLRVSGRVTY 235
K+ IL +S + +L G G+GKTTLL A SG + + G+V Y
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 236 CGHELTEFVPQRTCAYISQ---HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292
+ + + ++S GE + + + + +GV
Sbjct: 91 SAETVRQHI-----GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ------------- 132
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKR 352
+ID ++ A +LK++G A +G +S G+K+R
Sbjct: 133 --------DIDDEIRNEAHQ----------LLKLVGXSAKAQQYIGY-----LSTGEKQR 169
Query: 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412
V L G + L +DE + GLD ++ + + I + E
Sbjct: 170 VXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITAN 229
Query: 413 FDDIILLSEGEIVYQGPREYVL 434
F I+LL +G+ + QG E +L
Sbjct: 230 FSKILLLKDGQSIQQGAVEDIL 251
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224
+G+ P+R LL GPPG+GKT L +A++ +S+
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-LRVSG 231
+ P R LL GPPG+GKT L++A++ + + +RV+G
Sbjct: 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 1023 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1080 HQPSIDIFEAFDELFLM-----KRGGHVIYAG 1106
H ++D+ + D + + RGG ++ G
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 1023 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1080 HQPSIDIFEAFDELFLM-----KRGGHVIYAG 1106
H ++D+ + D + + RGG ++ G
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 1023 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 1080 HQPSIDIFEAFDELFLM-----KRGGHVIYAG 1106
H ++D+ + D + + RGG ++ G
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-KSLRVSG 231
GI +P + +L GPPG+GKT L +A++ +D K +RVSG
Sbjct: 178 GIAQP-KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 17/203 (8%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 964
+L+D++ G L A+ G +GAGKT+L+ ++ G K + RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRI 101
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAW--LRLPKDXXXXXXXXXXXXKALRNSLVGLPGVDG 1022
S +C QN P TI E+++ ++ R A ++++V G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS QR R+++A + + + +D P LD + + + +T + +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK- 218
Query: 1083 SIDIFEAFDELFLMKRGGHVIYA 1105
++ + D++ ++ G Y
Sbjct: 219 -MEHLKKADKILILHEGSSYFYG 240
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 106
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 17/203 (8%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 964
+L+D++ G L A+ G +GAGKT+L+ ++ G K + RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRI 101
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAW--LRLPKDXXXXXXXXXXXXKALRNSLVGLPGVDG 1022
S +C QN P TI E+++ ++ R A ++++V G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS QR R+++A + + + +D P LD + + + +T + +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK- 218
Query: 1083 SIDIFEAFDELFLMKRGGHVIYA 1105
++ + D++ ++ G Y
Sbjct: 219 -MEHLKKADKILILHEGSSYFYG 240
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 106
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223
VKP R LL GPPG+GKT + +A++ ++
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223
VKP R LL GPPG+GKT + +A++ ++
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223
VKP R LL GPPG+GKT + +A++ ++
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223
VKP R LL GPPG+GKT + +A++ ++
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223
VKP R LL GPPG+GKT + +A++ ++
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS---LRVSGRVTYCGH 238
+L +++ ++ M + G GSGKT+LL + G+ + S ++ SGRV++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223
VKP R LL GPPG+GKT + +A++ ++
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 106
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 106
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS---LRVSGRVTYCGH 238
+L +++ ++ M + G GSGKT+LL + G+ + S ++ SGRV++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 106
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 88
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 18/210 (8%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ 958
EE +L+D++ G L A+ G +GAGKT+L+ ++ G K
Sbjct: 29 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKI 77
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAW---LRLPKDXXXXXXXXXXXXKALRNSLV 1015
+ RIS +C Q P TI E++++ R A ++++V
Sbjct: 78 KHSGRIS-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 135
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 136 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 195
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105
+ + ++ + D++ ++ G Y
Sbjct: 196 ILVTSK--MEHLKKADKILILHEGSSYFYG 223
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS---LRVSGRVTYCGH 238
+L +++ ++ M + G GSGKT+LL + G+ + S ++ SGRV++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS---LRVSGRVTYCGH 238
+L +++ ++ M + G GSGKT+LL + G+ + S ++ SGRV++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 34.7 bits (78), Expect = 0.45, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-LRVSG 231
++P + LL GPPG+GKT L +A++ +++ + +RV G
Sbjct: 48 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS---LRVSGRVTYCGH 238
+L +++ ++ M + G GSGKT+LL + G+ + S ++ SGRV++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 86/210 (40%), Gaps = 47/210 (22%)
Query: 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEFVPQ-------RTCAYI 252
+T ++G SGK+T+++A++ + R+ SGRV Y G +L + + A +
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 253 SQHDLHHGEMTVRETLDFSGRCLGVGTRF---ELLAELSRREKDAGIKPDPEIDAFMKAT 309
Q T++ F G R+ EL+ + S + + + P+ +++
Sbjct: 96 PQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNS----- 150
Query: 310 AMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMD 369
Y L++ SGG K+RV L+ L +D
Sbjct: 151 ------------YPLQL-------------------SGGMKQRVLIALALLLDPVVLILD 179
Query: 370 EISTGLDSSTTFQIVRFMRQMVHITDVTMI 399
E ++ LD T I++ ++++ + +T+I
Sbjct: 180 EPTSALDVLTQAHIIQLLKELKKMLKITLI 209
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 18/210 (8%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ 958
EE +L+D++ G L A+ G +GAGKT+L+ ++ G K
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKI 65
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAW---LRLPKDXXXXXXXXXXXXKALRNSLV 1015
+ RIS +C Q P TI E++++ R A ++++V
Sbjct: 66 KHSGRIS-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 123
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 183
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105
+ + ++ + D++ ++ G Y
Sbjct: 184 ILVTSK--MEHLKKADKILILHEGSSYFYG 211
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 1023 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS + +R+ +A EL + + +DEPT GL ++ + VD G TV+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 1080 HQPSIDIFEAFDELFLM-----KRGGHVIYAG 1106
H ++D+ + D + + K GG+++ G
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 843 LFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMP-AEMKSQGIEEN 901
+F+G ++ PD+S+ G + K + VN +P A +K +G+ N
Sbjct: 550 VFQGTVDELLKNPDSSLTGEYLSGKRKIT-----------VNKTRRLPYASLKIKGVRHN 598
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM 933
L+ ++ GV + GVSG+GK++L+
Sbjct: 599 NLK---NIDVEIPLGVFVCVTGVSGSGKSSLV 627
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGH 238
+L D++ ++ ++ + G G+GKT+LL + G+ S+ ++ SGR+++C
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 17/209 (8%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ 958
EE +L+D++ G L A+ G +GAGKT+L+ ++ G K
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKI 65
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAW--LRLPKDXXXXXXXXXXXXKALRNSLVG 1016
+ RIS +C Q P TI E+++ ++ R A ++++V
Sbjct: 66 KHSGRIS-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 123
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 124 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Query: 1077 CTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105
+ ++ + D++ ++ G Y
Sbjct: 184 LVTSK--MEHLKKADKILILHEGSSYFYG 210
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM-DV 935
S+ + VD ++ G E+ L+ + DVS F GVLT++ GVSG+GK+TL+ D+
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNLRGI-DVS--FPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 936 LA 937
LA
Sbjct: 689 LA 690
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1023 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1080 HQPSIDIFEAFD 1091
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 24/186 (12%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 964
+L+++S + PG L+G +G+GK+TL+ E + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKA 95
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKA----LRNSLVGLPG- 1019
G Q + ++S R D A LR+ + PG
Sbjct: 96 FGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGK 144
Query: 1020 -----VDG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
VDG LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 145 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD 204
Query: 1072 GRTVVC 1077
++C
Sbjct: 205 CTVILC 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.9 bits (76), Expect = 0.77, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 203 LLLGPPGSGKTTLLQALSG 221
++LGP GSGKTTLL+A+SG
Sbjct: 34 IILGPNGSGKTTLLRAISG 52
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 1023 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
LS + +RL +A +L +N + +DEP++GL ++ + N G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1081 QPSIDIFEAFDELFLM-----KRGGHVIYAGP 1107
+D+ D L + ++GG ++Y+GP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 1015 VGLPGVDGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
+G P + LS + +R+ +A EL + ++ +DEPT+GL + R + VD
Sbjct: 724 LGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 1072 GRTVVCTIHQ 1081
G TV+ H+
Sbjct: 783 GNTVIAVEHK 792
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 33.5 bits (75), Expect = 0.97, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L +SG V+ + L+GP G+GK+TLL ++G + G + + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKL 71
Query: 249 C---AYISQH 255
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 889 MPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938
M M+ Q + E+ L +SG R G + LVG +GAGK+TL+ +AG
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L +SG V+ + L+GP G+GK+TLL ++G + G + + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKL 71
Query: 249 C---AYISQH 255
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 889 MPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938
M M+ Q + E+ L +SG R G + LVG +GAGK+TL+ +AG
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-LRVSG 231
+ P + LL GPPG+GKT +A++ ++D + +RV G
Sbjct: 240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSG 221
+KP + LL GPPG+GKT L +A++
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 183 KRKLEILHDVSGIVK-PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVS 230
K+KL + + + K P LL GPPG GKTTL ++ + +LRV+
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 183 KRKLEILHDVSGIVK-PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVS 230
K+KL + + + K P LL GPPG GKTTL ++ + +LRV+
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 183 KRKLEILHDVSGIVK-PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVS 230
K+KL + + + K P LL GPPG GKTTL ++ + +LRV+
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 343 RGISGGQKKRVTT------GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396
RG+SGG++ ++ E+ G A F+DE + LD+ +I ++++ + V
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 397 TMIISLLQPAPETYD 411
+ I+ + E +D
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 20/22 (90%)
Query: 203 LLLGPPGSGKTTLLQALSGKSD 224
LL+GPPG+GKT L +A++G+++
Sbjct: 53 LLVGPPGTGKTLLARAVAGEAN 74
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 193 SGIVKPSRMTLLLGPPGSGKTTLLQALS 220
+G+ P++ LL GPPG+GKT L +A++
Sbjct: 48 TGLRAPAKGLLLFGPPGNGKTLLARAVA 75
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L +SG V+ + L+GP G+GK+TLL +G + G + + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG----KGSIQFAGQPLEAWSATKL 71
Query: 249 C---AYISQH 255
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 11/206 (5%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 965
L +SG R G + LVG +GAGK+TL+ AG + A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGVDGLST 1025
Y Q ++ L + + L S L G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG----GE 131
Query: 1026 EQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
QR RL V + ANP+ ++ +DEP + LD + + + + G +V + H
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSH 191
Query: 1081 QPSIDIFEAFDELFLMKRGGHVIYAG 1106
+ + A L +GG + +G
Sbjct: 192 DLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 10/49 (20%)
Query: 185 KLEILHDVSGIVKPSRM----------TLLLGPPGSGKTTLLQALSGKS 223
K E+ V + +PSR L++GPPG+GKT L +A++G++
Sbjct: 21 KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 27/119 (22%)
Query: 164 TSLNAIEGVLGFLRLFPSKKRKLE------ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQ 217
+ N G R PSK +E + VS + P + L+ GP GSGK+T L
Sbjct: 84 NAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDV--PRGLVLVTGPTGSGKSTTLA 141
Query: 218 ALSGKSDKSLRVSGRVTYCGHELT-----EFVPQRTCAYISQHDLHHGEMTVRETLDFS 271
A+ + T H LT EFV + ++Q ++H R+TL FS
Sbjct: 142 AMLDYLNN--------TKYHHILTIEDPIEFVHESKKCLVNQREVH------RDTLGFS 186
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 28/169 (16%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 965
L ++ + G L A+VG G GK++L+ L Q+ +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI--- 77
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLPKDXXXXXXXXXXXXKALRNSLVGLPGVD---- 1021
QND ++ E++L+ L P AL L LP D
Sbjct: 78 ----QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDRTEI 121
Query: 1022 -----GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223
K + LL+GPPG+GKT L +A++G++
Sbjct: 42 KIPKGVLLVGPPGTGKTLLAKAVAGEA 68
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L +SG V+ + L+GP G+GK+TLL +G + G + + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG----KGSIQFAGQPLEAWSATKL 71
Query: 249 C---AYISQH 255
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938
L +SG R G + LVG +GAGK+TL+ AG
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG 48
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 343 RGISGGQKKRVTT------GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396
RG+SGG++ ++ E+ G A F+DE + LD+ +I ++++ + V
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 397 TMIISLLQPAPETYD 411
+ I+ + E +D
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226
H +G P R LL GPPG+GK+ L +A++ +++ S
Sbjct: 158 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 194
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226
H +G P R LL GPPG+GK+ L +A++ +++ S
Sbjct: 36 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 72
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 200 RMTLLLGPPGSGKTTLLQAL----SGKSDKSLRVSGR--VTYCGHELTEFVPQRTCAYIS 253
R+T ++GP GSGK+ ++ A+ +S K LR S + + + G +E +P AY+
Sbjct: 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAG---SENLPPAGSAYVE 81
Query: 254 QHDLHHG-EMTVRETLDFSG 272
+G E+TV L +G
Sbjct: 82 LVFEENGEEITVARELKRTG 101
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 203 LLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE-FV---PQRTCAYISQHDLH 258
LL+GPPG GKT L +A++G++ +T G + E FV R H
Sbjct: 77 LLVGPPGVGKTHLARAVAGEARVPF-----ITASGSDFVEMFVGVGAARVRDLFETAKRH 131
Query: 259 HGEMTVRETLDFSGRCLGVG----------TRFELLAELSRREKDAGI 296
+ + +D GR G G T +LL E+ EKD I
Sbjct: 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 203 LLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE-FV---PQRTCAYISQHDLH 258
LL+GPPG GKT L +A++G++ +T G + E FV R H
Sbjct: 53 LLVGPPGVGKTHLARAVAGEARVPF-----ITASGSDFVEMFVGVGAARVRDLFETAKRH 107
Query: 259 HGEMTVRETLDFSGRCLGVG----------TRFELLAELSRREKDAGI 296
+ + +D GR G G T +LL E+ EKD I
Sbjct: 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 192 VSGIVKPSRMTLLLGPPGSGKT-TLLQALSGKSDKSLRVSGRVTYCGH---ELTEFVPQR 247
V G+ + + LLG G+GKT T+ ++ + +L ++ T G EL EF P
Sbjct: 25 VDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHN 84
Query: 248 TCAY-ISQHDLHHGEMTVRET 267
Y +S +D + E V +T
Sbjct: 85 AVEYFVSYYDYYQPEAYVPQT 105
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 192 VSGIVKPSRMTLLLGPPGSGKT-TLLQALSGKSDKSLRVSGRVTYCGH---ELTEFVPQR 247
V G+ + + LLG G+GKT T+ ++ + +L ++ T G EL EF P
Sbjct: 25 VDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHN 84
Query: 248 TCAY-ISQHDLHHGEMTVRET 267
Y +S +D + E V +T
Sbjct: 85 AVEYFVSYYDYYQPEAYVPQT 105
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 192 VSGIVKPSRMTLLLGPPGSGKT-TLLQALSGKSDKSLRVSGRVTYCGH---ELTEFVPQR 247
V G+ + + LLG G+GKT T+ ++ + +L ++ T G EL EF P
Sbjct: 25 VDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHN 84
Query: 248 TCAY-ISQHDLHHGEMTVRET 267
Y +S +D + E V +T
Sbjct: 85 AVEYFVSYYDYYQPEAYVPQT 105
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263
++GP G+GK+TL+ L+G + L SG V HE AYI QH H E
Sbjct: 704 VIGPNGAGKSTLINVLTG---ELLPTSGEVYT--HENCRI------AYIKQHAFAHIESH 752
Query: 264 VRET 267
+ +T
Sbjct: 753 LDKT 756
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK-SLRVSGRVTYCGH---ELTEFVPQR 247
V GI + + LLG G+GKT + L + +K +L ++ T G E EF P
Sbjct: 31 VKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNN 90
Query: 248 TCAY-ISQHDLHHGEMTVRETLDF 270
Y +S +D + E V +T F
Sbjct: 91 AVEYFVSYYDYYQPEAYVPQTDTF 114
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK-SLRVSGRVTYCGH---ELTEFVPQR 247
V GI + + LLG G+GKT + L + +K +L ++ T G E EF P
Sbjct: 25 VKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNN 84
Query: 248 TCAY-ISQHDLHHGEMTVRETLDF 270
Y +S +D + E V +T F
Sbjct: 85 AVEYFVSYYDYYQPEAYVPQTDTF 108
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLH 258
S ++GP G+GK+TL+ L+G + L SG V HE AYI QH
Sbjct: 699 SSRIAVIGPNGAGKSTLINVLTG---ELLPTSGEVYT--HENCRI------AYIKQHAFA 747
Query: 259 HGEMTVRET 267
H E + +T
Sbjct: 748 HIESHLDKT 756
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLH 258
S ++GP G+GK+TL+ L+G + L SG V HE AYI QH
Sbjct: 693 SSRIAVIGPNGAGKSTLINVLTG---ELLPTSGEVYT--HENCRI------AYIKQHAFA 741
Query: 259 HGEMTVRET 267
H E + +T
Sbjct: 742 HIESHLDKT 750
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940
L+ +S +P V+ A+VG+ GK+ LM+ LAG+K
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223
G+V P+ + LL GPPG GKT L +A++ +S
Sbjct: 40 GLVTPAGV-LLAGPPGCGKTLLAKAVANES 68
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL 227
H G KP+ LL GPPG+GK+ L +A++ +++ +
Sbjct: 42 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL 227
H G KP+ LL GPPG+GK+ L +A++ +++ +
Sbjct: 51 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 88
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL 227
H G KP+ LL GPPG+GK+ L +A++ +++ +
Sbjct: 60 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 97
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 203 LLLGPPGSGKTTLLQALSGKS 223
LL+GPPG GKT L +A++G++
Sbjct: 68 LLVGPPGVGKTHLARAVAGEA 88
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 203 LLLGPPGSGKTTLLQALSGKS 223
LL+GPPG GKT L +A++G++
Sbjct: 77 LLVGPPGVGKTHLARAVAGEA 97
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940
+ L+ +S +P V+ A+VG+ GK+ LM+ LAG+K
Sbjct: 37 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 73
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL 227
H G KP+ LL GPPG+GK+ L +A++ +++ +
Sbjct: 75 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-LRVSG 231
+KP + +L G PG+GKT L +A++ ++ + LR+ G
Sbjct: 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 192 VSGIVKPSRMTLLLGPPGSGKT-TLLQALSGKSDKSLRVSGRVTYCGH---ELTEFVPQR 247
V G+ + + LLG G+GKT T+ ++ + +L ++ T G EL EF P
Sbjct: 25 VDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHN 84
Query: 248 TCAY-ISQHDLHHGEMTVRET 267
Y +S +D E V +T
Sbjct: 85 AVEYFVSYYDYAQPEAYVPQT 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,576,088
Number of Sequences: 62578
Number of extensions: 1582417
Number of successful extensions: 4327
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3880
Number of HSP's gapped (non-prelim): 470
length of query: 1472
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1361
effective length of database: 8,027,179
effective search space: 10924990619
effective search space used: 10924990619
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)