Query 045902
Match_columns 1472
No_of_seqs 871 out of 5952
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 8.2E-72 2.8E-76 763.5 44.8 214 877-1108 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1.6E-65 5.6E-70 699.7 58.0 214 877-1108 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 4E-56 1.4E-60 561.6 32.7 188 905-1110 371-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 7E-56 2.4E-60 554.5 32.4 188 905-1110 301-490 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-54 1E-58 538.0 32.7 201 905-1122 283-486 (538)
6 2iw3_A Elongation factor 3A; a 100.0 4.2E-53 1.4E-57 548.4 42.2 184 186-434 448-634 (986)
7 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-53 5.4E-58 550.2 37.3 214 185-433 30-296 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 1.2E-52 4E-57 528.7 30.4 201 904-1122 361-568 (608)
9 3pih_A Uvrabc system protein A 100.0 3.5E-40 1.2E-44 428.3 34.6 198 904-1109 598-898 (916)
10 3tui_C Methionine import ATP-b 100.0 5.9E-40 2E-44 386.3 27.2 207 185-434 40-252 (366)
11 2r6f_A Excinuclease ABC subuni 100.0 1.7E-39 6E-44 417.3 33.6 195 905-1108 639-937 (972)
12 3tui_C Methionine import ATP-b 100.0 5E-40 1.7E-44 386.8 24.8 215 877-1109 24-249 (366)
13 2olj_A Amino acid ABC transpor 100.0 2E-39 6.9E-44 369.4 25.8 209 878-1108 25-243 (263)
14 3tif_A Uncharacterized ABC tra 100.0 1.9E-39 6.5E-44 364.7 24.9 213 878-1109 2-230 (235)
15 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-39 4.2E-44 373.2 23.3 212 877-1109 7-229 (275)
16 3rlf_A Maltose/maltodextrin im 100.0 1.9E-39 6.5E-44 384.4 25.6 210 878-1109 4-219 (381)
17 1b0u_A Histidine permease; ABC 100.0 2.3E-39 7.9E-44 369.7 24.6 209 878-1108 7-237 (262)
18 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-39 4.3E-44 383.6 23.1 210 878-1109 5-224 (359)
19 2pcj_A ABC transporter, lipopr 100.0 3.2E-39 1.1E-43 360.4 24.8 207 878-1107 5-222 (224)
20 3tif_A Uncharacterized ABC tra 100.0 5.1E-39 1.7E-43 361.2 25.3 207 186-433 18-232 (235)
21 1vpl_A ABC transporter, ATP-bi 100.0 3.8E-39 1.3E-43 366.0 24.1 209 878-1108 16-230 (256)
22 2vf7_A UVRA2, excinuclease ABC 100.0 7.1E-39 2.4E-43 412.9 29.4 195 905-1108 512-822 (842)
23 3fvq_A Fe(3+) IONS import ATP- 100.0 5.1E-39 1.7E-43 378.4 25.5 207 186-435 17-228 (359)
24 1g6h_A High-affinity branched- 100.0 2.9E-39 1E-43 368.3 21.7 211 877-1109 7-238 (257)
25 1ji0_A ABC transporter; ATP bi 100.0 5.7E-39 2E-43 362.1 23.6 210 877-1108 6-223 (240)
26 4g1u_C Hemin import ATP-bindin 100.0 4.3E-39 1.5E-43 367.9 22.6 211 877-1109 11-233 (266)
27 3rlf_A Maltose/maltodextrin im 100.0 7.2E-39 2.5E-43 379.5 25.1 207 186-435 16-223 (381)
28 3gfo_A Cobalt import ATP-bindi 100.0 2.3E-38 7.9E-43 362.7 27.0 206 187-435 22-233 (275)
29 4g1u_C Hemin import ATP-bindin 100.0 2.7E-38 9.2E-43 361.3 27.1 204 186-434 24-236 (266)
30 1z47_A CYSA, putative ABC-tran 100.0 8.8E-39 3E-43 376.8 22.9 212 877-1109 14-231 (355)
31 2yyz_A Sugar ABC transporter, 100.0 1.3E-38 4.6E-43 376.2 24.6 210 878-1109 4-219 (359)
32 2ygr_A Uvrabc system protein A 100.0 1.2E-37 4.1E-42 401.9 35.4 195 905-1108 657-955 (993)
33 2it1_A 362AA long hypothetical 100.0 1.6E-38 5.3E-43 376.1 24.1 210 878-1109 4-219 (362)
34 1g29_1 MALK, maltose transport 100.0 2.6E-38 8.8E-43 376.4 25.4 210 878-1109 4-225 (372)
35 2yyz_A Sugar ABC transporter, 100.0 3.6E-38 1.2E-42 372.6 26.1 206 186-434 16-222 (359)
36 2pcj_A ABC transporter, lipopr 100.0 3.4E-38 1.2E-42 352.1 24.0 200 186-430 17-223 (224)
37 1z47_A CYSA, putative ABC-tran 100.0 3.3E-38 1.1E-42 371.9 24.7 206 186-434 28-234 (355)
38 2it1_A 362AA long hypothetical 100.0 4.5E-38 1.5E-42 372.2 25.3 206 186-434 16-222 (362)
39 3d31_A Sulfate/molybdate ABC t 100.0 1.7E-38 5.7E-43 374.3 21.5 198 902-1109 13-213 (348)
40 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-38 5.1E-43 376.3 20.7 210 878-1109 4-226 (353)
41 2olj_A Amino acid ABC transpor 100.0 7.6E-38 2.6E-42 356.4 25.7 205 186-434 37-247 (263)
42 1v43_A Sugar-binding transport 100.0 2.4E-38 8.3E-43 375.8 21.8 210 878-1109 12-227 (372)
43 3d31_A Sulfate/molybdate ABC t 100.0 5E-38 1.7E-42 370.3 23.8 201 188-434 15-216 (348)
44 2onk_A Molybdate/tungstate ABC 100.0 2.8E-38 9.5E-43 355.7 20.5 194 905-1108 14-211 (240)
45 2yz2_A Putative ABC transporte 100.0 5.6E-38 1.9E-42 359.3 23.0 197 903-1108 20-222 (266)
46 1g29_1 MALK, maltose transport 100.0 8.9E-38 3E-42 371.8 25.4 206 186-434 16-228 (372)
47 1b0u_A Histidine permease; ABC 100.0 5.8E-38 2E-42 358.2 22.8 205 186-434 19-241 (262)
48 1v43_A Sugar-binding transport 100.0 7.2E-38 2.5E-42 371.7 24.1 206 186-434 24-230 (372)
49 3nh6_A ATP-binding cassette SU 100.0 5.9E-38 2E-42 363.7 22.7 208 186-435 67-277 (306)
50 2ihy_A ABC transporter, ATP-bi 100.0 1.4E-38 4.7E-43 365.9 17.1 215 873-1109 17-248 (279)
51 1g6h_A High-affinity branched- 100.0 8.6E-38 3E-42 356.1 23.3 215 186-432 20-239 (257)
52 1oxx_K GLCV, glucose, ABC tran 100.0 7.4E-38 2.5E-42 370.3 23.2 204 188-434 20-229 (353)
53 1vpl_A ABC transporter, ATP-bi 100.0 1.6E-37 5.4E-42 352.7 24.5 206 186-435 28-235 (256)
54 1ji0_A ABC transporter; ATP bi 100.0 2E-37 6.9E-42 349.5 24.2 204 186-434 19-227 (240)
55 2qi9_C Vitamin B12 import ATP- 100.0 9.2E-38 3.1E-42 353.2 21.0 195 904-1109 14-218 (249)
56 2d2e_A SUFC protein; ABC-ATPas 100.0 9.8E-38 3.3E-42 354.2 20.7 210 878-1109 4-229 (250)
57 2onk_A Molybdate/tungstate ABC 100.0 1.4E-37 4.9E-42 349.9 21.7 201 188-434 14-215 (240)
58 2ff7_A Alpha-hemolysin translo 100.0 1.9E-37 6.4E-42 350.9 22.7 211 877-1108 7-227 (247)
59 3nh6_A ATP-binding cassette SU 100.0 1.9E-37 6.6E-42 359.4 22.0 211 876-1108 52-272 (306)
60 2nq2_C Hypothetical ABC transp 100.0 5.3E-37 1.8E-41 348.2 22.6 200 878-1109 5-213 (253)
61 2zu0_C Probable ATP-dependent 100.0 6.5E-37 2.2E-41 350.5 23.3 214 877-1109 20-250 (267)
62 1sgw_A Putative ABC transporte 100.0 6.8E-38 2.3E-42 345.9 14.4 195 877-1096 10-206 (214)
63 2yz2_A Putative ABC transporte 100.0 1.1E-36 3.7E-41 348.6 23.4 205 186-435 20-227 (266)
64 2ff7_A Alpha-hemolysin translo 100.0 2.6E-36 8.8E-41 341.6 25.3 200 186-434 22-231 (247)
65 2ixe_A Antigen peptide transpo 100.0 6.8E-37 2.3E-41 350.9 20.7 211 877-1108 16-240 (271)
66 1mv5_A LMRA, multidrug resista 100.0 2.6E-37 9E-42 349.4 15.7 197 903-1108 15-221 (243)
67 2ihy_A ABC transporter, ATP-bi 100.0 2.7E-36 9.2E-41 346.9 20.5 208 186-433 34-250 (279)
68 2ghi_A Transport protein; mult 100.0 2.8E-36 9.6E-41 343.9 20.5 211 877-1108 17-237 (260)
69 2ixe_A Antigen peptide transpo 100.0 4.3E-36 1.5E-40 344.2 22.0 209 186-435 32-245 (271)
70 2pjz_A Hypothetical protein ST 100.0 4.9E-36 1.7E-40 341.5 22.0 190 903-1108 18-210 (263)
71 2qi9_C Vitamin B12 import ATP- 100.0 8.2E-36 2.8E-40 337.2 20.5 197 187-433 14-220 (249)
72 2d2e_A SUFC protein; ABC-ATPas 100.0 8.6E-36 2.9E-40 338.3 20.6 206 186-432 16-230 (250)
73 2nq2_C Hypothetical ABC transp 100.0 3.7E-35 1.3E-39 333.1 25.3 197 186-433 18-215 (253)
74 2zu0_C Probable ATP-dependent 100.0 4.5E-35 1.5E-39 335.3 25.8 221 186-443 33-261 (267)
75 1mv5_A LMRA, multidrug resista 100.0 6.7E-36 2.3E-40 337.8 17.4 202 186-435 15-226 (243)
76 2ghi_A Transport protein; mult 100.0 3.9E-35 1.3E-39 334.4 23.3 206 186-435 33-242 (260)
77 2pjz_A Hypothetical protein ST 100.0 7.5E-35 2.6E-39 331.7 24.6 194 186-434 18-214 (263)
78 4a82_A Cystic fibrosis transme 100.0 3.8E-35 1.3E-39 372.1 23.5 208 186-435 354-564 (578)
79 2pze_A Cystic fibrosis transme 100.0 3.8E-35 1.3E-39 328.6 20.3 200 877-1108 6-213 (229)
80 2cbz_A Multidrug resistance-as 100.0 3.5E-35 1.2E-39 330.4 18.7 199 878-1108 4-212 (237)
81 3gd7_A Fusion complex of cysti 100.0 2.9E-35 1E-39 351.4 19.1 200 186-435 34-242 (390)
82 3qf4_A ABC transporter, ATP-bi 100.0 5.7E-35 2E-39 370.5 22.7 208 186-435 356-566 (587)
83 3gd7_A Fusion complex of cysti 100.0 1.7E-35 5.9E-40 353.4 16.1 211 877-1109 19-238 (390)
84 2yl4_A ATP-binding cassette SU 100.0 1.8E-34 6.3E-39 367.3 24.3 214 878-1109 342-566 (595)
85 1sgw_A Putative ABC transporte 100.0 8E-35 2.7E-39 321.4 18.0 188 187-424 23-210 (214)
86 2yl4_A ATP-binding cassette SU 100.0 2.1E-34 7.1E-39 366.8 24.4 210 186-434 357-569 (595)
87 2pze_A Cystic fibrosis transme 100.0 2.6E-34 8.7E-39 321.9 22.2 196 186-434 21-217 (229)
88 3b60_A Lipid A export ATP-bind 100.0 2.3E-34 8E-39 365.4 24.7 209 186-435 356-567 (582)
89 3b5x_A Lipid A export ATP-bind 100.0 2.7E-34 9.4E-39 364.7 24.3 209 186-435 356-567 (582)
90 2cbz_A Multidrug resistance-as 100.0 3.9E-34 1.3E-38 321.9 21.2 196 186-435 18-217 (237)
91 3qf4_A ABC transporter, ATP-bi 100.0 2.4E-34 8.2E-39 364.8 21.8 213 876-1109 340-562 (587)
92 3b60_A Lipid A export ATP-bind 100.0 2.2E-34 7.4E-39 365.6 21.2 212 877-1108 341-562 (582)
93 4a82_A Cystic fibrosis transme 100.0 2.9E-34 9.8E-39 364.0 21.4 212 876-1108 338-559 (578)
94 3qf4_B Uncharacterized ABC tra 100.0 2.6E-34 8.8E-39 365.6 20.9 208 186-435 368-578 (598)
95 3b5x_A Lipid A export ATP-bind 100.0 3.3E-34 1.1E-38 364.0 21.6 212 877-1108 341-562 (582)
96 4f4c_A Multidrug resistance pr 100.0 1.5E-34 5E-39 396.0 18.2 211 185-435 1091-1304(1321)
97 3qf4_B Uncharacterized ABC tra 100.0 6.5E-34 2.2E-38 361.9 18.8 210 877-1108 354-573 (598)
98 2bbs_A Cystic fibrosis transme 100.0 4.9E-33 1.7E-37 321.0 19.3 185 903-1109 51-243 (290)
99 2bbs_A Cystic fibrosis transme 100.0 1.8E-32 6.3E-37 316.2 17.4 194 187-434 52-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 2.1E-31 7.1E-36 364.1 20.8 210 186-435 1046-1258(1284)
101 3bk7_A ABC transporter ATP-bin 100.0 2.6E-29 8.8E-34 317.3 19.0 191 188-435 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 3.7E-29 1.2E-33 313.1 17.1 191 188-435 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-28 4.3E-33 307.3 19.6 192 188-434 283-476 (538)
104 1tf7_A KAIC; homohexamer, hexa 100.0 8.2E-31 2.8E-35 329.1 -2.6 155 910-1099 275-443 (525)
105 3j16_B RLI1P; ribosome recycli 100.0 3E-28 1E-32 306.9 19.6 192 187-435 361-559 (608)
106 2iw3_A Elongation factor 3A; a 100.0 4.2E-28 1.4E-32 315.1 20.6 181 902-1108 447-630 (986)
107 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-28 6.1E-33 316.6 14.5 200 902-1109 30-294 (670)
108 3pih_A Uvrabc system protein A 99.9 2.1E-23 7.3E-28 271.3 22.5 107 320-434 785-901 (916)
109 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-26 4.9E-31 283.2 -8.0 195 906-1121 128-350 (460)
110 2r6f_A Excinuclease ABC subuni 99.9 1E-23 3.5E-28 271.6 17.5 106 321-434 826-941 (972)
111 4aby_A DNA repair protein RECN 99.9 6.7E-24 2.3E-28 259.1 14.0 197 903-1105 48-380 (415)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.6E-26 2.3E-30 277.3 -4.9 186 190-434 129-337 (460)
113 2ygr_A Uvrabc system protein A 99.9 2.5E-23 8.6E-28 269.0 16.8 107 321-435 844-960 (993)
114 2vf7_A UVRA2, excinuclease ABC 99.9 2.4E-23 8.2E-28 268.8 16.1 107 320-434 710-826 (842)
115 4aby_A DNA repair protein RECN 99.9 1.3E-22 4.5E-27 247.6 12.2 237 186-428 48-381 (415)
116 3b85_A Phosphate starvation-in 99.9 1.4E-24 4.9E-29 238.7 -7.7 143 901-1083 11-159 (208)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.6E-21 5.4E-26 233.2 15.6 82 1020-1104 277-364 (365)
118 4gp7_A Metallophosphoesterase; 99.8 1.4E-22 4.9E-27 216.5 1.4 150 908-1092 1-167 (171)
119 1e69_A Chromosome segregation 99.8 3.8E-21 1.3E-25 226.6 12.1 86 1020-1108 217-308 (322)
120 1tq4_A IIGP1, interferon-induc 99.8 4.5E-23 1.6E-27 247.8 -8.6 171 903-1094 36-248 (413)
121 3b85_A Phosphate starvation-in 99.8 3.1E-22 1.1E-26 220.1 -5.3 148 184-406 11-159 (208)
122 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 9.1E-20 3.1E-24 218.0 15.5 83 341-426 276-364 (365)
123 1e69_A Chromosome segregation 99.8 8.7E-20 3E-24 214.9 11.2 87 342-432 217-310 (322)
124 1ye8_A Protein THEP1, hypothet 99.8 1.2E-20 4.1E-25 202.6 1.6 148 918-1107 2-162 (178)
125 1znw_A Guanylate kinase, GMP k 99.8 1.5E-22 5.2E-27 223.1 -13.7 177 902-1100 8-205 (207)
126 1tq4_A IIGP1, interferon-induc 99.8 1.2E-21 4.2E-26 235.4 -7.1 172 185-416 35-247 (413)
127 2v9p_A Replication protein E1; 99.8 4.2E-22 1.4E-26 230.1 -11.4 157 186-439 113-270 (305)
128 4gp7_A Metallophosphoesterase; 99.8 6.5E-20 2.2E-24 195.9 3.2 60 345-405 84-159 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 3.2E-20 1.1E-24 199.3 0.6 149 201-426 2-159 (178)
130 1z6g_A Guanylate kinase; struc 99.7 5.6E-22 1.9E-26 220.4 -17.6 152 903-1069 10-174 (218)
131 3sop_A Neuronal-specific septi 99.7 2.6E-20 9E-25 213.2 -5.1 146 918-1082 4-150 (270)
132 3b9q_A Chloroplast SRP recepto 99.7 6.7E-20 2.3E-24 212.9 -2.0 154 906-1081 90-256 (302)
133 3b9q_A Chloroplast SRP recepto 99.7 2.4E-19 8.1E-24 208.3 -0.2 175 189-424 90-284 (302)
134 2pt7_A CAG-ALFA; ATPase, prote 99.7 3.5E-19 1.2E-23 209.8 0.7 131 904-1099 159-290 (330)
135 2v9p_A Replication protein E1; 99.7 1.7E-21 5.9E-26 225.0 -19.1 158 903-1122 113-271 (305)
136 2dpy_A FLII, flagellum-specifi 99.7 5.1E-20 1.7E-24 224.2 -8.6 175 902-1108 144-339 (438)
137 2og2_A Putative signal recogni 99.7 4.4E-19 1.5E-23 209.7 -0.8 153 907-1081 148-313 (359)
138 3sop_A Neuronal-specific septi 99.7 3.8E-19 1.3E-23 203.5 -1.2 146 201-404 4-149 (270)
139 3qkt_A DNA double-strand break 99.7 5.8E-17 2E-21 192.1 16.4 76 1020-1097 246-327 (339)
140 2o5v_A DNA replication and rep 99.7 1.9E-17 6.5E-22 196.1 10.6 86 339-433 259-354 (359)
141 2og2_A Putative signal recogni 99.7 2.6E-18 8.9E-23 203.1 0.8 174 190-424 148-341 (359)
142 1cr0_A DNA primase/helicase; R 99.7 7.1E-18 2.4E-22 196.2 3.8 183 903-1099 22-235 (296)
143 2o5v_A DNA replication and rep 99.7 5.1E-17 1.7E-21 192.5 10.1 79 1022-1109 265-352 (359)
144 1z6g_A Guanylate kinase; struc 99.7 2E-20 6.7E-25 208.0 -19.1 174 186-421 10-193 (218)
145 2dpy_A FLII, flagellum-specifi 99.7 5.7E-19 2E-23 214.9 -8.3 179 185-433 144-342 (438)
146 4ad8_A DNA repair protein RECN 99.7 1.6E-16 5.6E-21 198.9 13.0 77 1020-1099 394-473 (517)
147 2pt7_A CAG-ALFA; ATPase, prote 99.6 2.2E-17 7.4E-22 194.5 2.9 133 188-424 160-292 (330)
148 1znw_A Guanylate kinase, GMP k 99.6 1.1E-19 3.6E-24 200.4 -16.3 190 186-420 9-202 (207)
149 3aez_A Pantothenate kinase; tr 99.6 5.1E-18 1.7E-22 198.0 -4.4 128 191-377 81-209 (312)
150 1tf7_A KAIC; homohexamer, hexa 99.6 3.6E-18 1.2E-22 214.3 -6.7 167 902-1098 24-209 (525)
151 3qkt_A DNA double-strand break 99.6 2.4E-15 8.2E-20 178.3 16.1 80 341-423 245-332 (339)
152 2jeo_A Uridine-cytidine kinase 99.6 1.4E-17 4.9E-22 188.3 -3.1 151 901-1081 10-164 (245)
153 2obl_A ESCN; ATPase, hydrolase 99.6 7E-17 2.4E-21 190.9 2.6 176 902-1108 58-250 (347)
154 2ehv_A Hypothetical protein PH 99.6 3.4E-17 1.2E-21 185.0 -1.2 169 906-1098 19-207 (251)
155 3aez_A Pantothenate kinase; tr 99.6 2.8E-18 9.7E-23 200.2 -10.5 120 913-1055 87-209 (312)
156 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1.2E-15 4E-20 158.2 9.8 76 1020-1097 55-136 (148)
157 1cr0_A DNA primase/helicase; R 99.6 1.1E-16 3.8E-21 186.1 2.4 187 185-424 21-237 (296)
158 4ad8_A DNA repair protein RECN 99.6 1.1E-15 3.8E-20 191.3 10.9 77 342-422 394-473 (517)
159 2eyu_A Twitching motility prot 99.6 2.3E-16 7.9E-21 179.6 3.5 132 904-1098 15-147 (261)
160 3thx_A DNA mismatch repair pro 99.6 1.2E-15 4.2E-20 199.8 10.6 149 902-1108 648-808 (934)
161 2jeo_A Uridine-cytidine kinase 99.6 1E-16 3.4E-21 181.3 0.3 155 184-404 10-164 (245)
162 2o8b_B DNA mismatch repair pro 99.6 2.9E-16 9.8E-21 208.3 3.1 152 903-1103 769-930 (1022)
163 3thx_A DNA mismatch repair pro 99.6 4.7E-15 1.6E-19 194.3 10.6 89 343-433 720-811 (934)
164 4a74_A DNA repair and recombin 99.5 3.1E-16 1.1E-20 174.8 -1.1 158 905-1099 13-200 (231)
165 3thx_B DNA mismatch repair pro 99.5 2.6E-15 8.8E-20 196.1 7.1 145 902-1093 659-805 (918)
166 1ewq_A DNA mismatch repair pro 99.5 1.4E-15 4.8E-20 196.0 1.4 129 902-1083 565-699 (765)
167 2qnr_A Septin-2, protein NEDD5 99.5 1.4E-16 4.8E-21 185.4 -8.1 157 901-1083 9-168 (301)
168 2obl_A ESCN; ATPase, hydrolase 99.5 6.3E-16 2.2E-20 182.7 -2.7 180 185-433 58-253 (347)
169 3asz_A Uridine kinase; cytidin 99.5 1.3E-16 4.5E-21 175.9 -8.5 142 913-1082 3-161 (211)
170 4a74_A DNA repair and recombin 99.5 2.8E-15 9.5E-20 167.1 2.1 63 361-423 124-201 (231)
171 1rj9_A FTSY, signal recognitio 99.5 1.7E-15 6E-20 175.9 -1.0 148 915-1082 101-258 (304)
172 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.5E-14 5E-19 161.2 6.4 167 903-1098 9-191 (235)
173 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 7.8E-14 2.7E-18 144.5 10.7 82 340-424 53-142 (148)
174 1wb9_A DNA mismatch repair pro 99.5 7.7E-15 2.6E-19 190.2 2.9 156 902-1106 594-751 (800)
175 1pzn_A RAD51, DNA repair and r 99.5 1.5E-15 5.1E-20 180.3 -3.9 163 905-1105 119-307 (349)
176 2qnr_A Septin-2, protein NEDD5 99.5 1.8E-15 6E-20 176.2 -3.5 155 185-404 10-166 (301)
177 2o8b_B DNA mismatch repair pro 99.5 3.5E-15 1.2E-19 198.0 -1.3 159 186-431 769-938 (1022)
178 3asz_A Uridine kinase; cytidin 99.5 5.6E-16 1.9E-20 170.8 -7.5 145 196-404 3-160 (211)
179 1nlf_A Regulatory protein REPA 99.5 5.2E-14 1.8E-18 162.2 8.4 151 912-1083 26-182 (279)
180 3thx_B DNA mismatch repair pro 99.5 6.4E-14 2.2E-18 183.0 9.8 71 343-416 734-805 (918)
181 1pzn_A RAD51, DNA repair and r 99.4 6.7E-15 2.3E-19 174.7 -0.6 169 187-430 118-310 (349)
182 2ehv_A Hypothetical protein PH 99.4 7.3E-15 2.5E-19 165.8 -0.9 74 346-420 119-206 (251)
183 2eyu_A Twitching motility prot 99.4 1.4E-14 4.7E-19 164.9 1.3 133 187-421 15-147 (261)
184 1w1w_A Structural maintenance 99.4 3.3E-13 1.1E-17 165.2 13.7 75 343-420 332-410 (430)
185 1rj9_A FTSY, signal recognitio 99.4 7.9E-15 2.7E-19 170.3 -0.9 149 198-405 101-258 (304)
186 3jvv_A Twitching mobility prot 99.4 2.3E-14 7.9E-19 169.8 2.7 132 905-1098 114-245 (356)
187 2i3b_A HCR-ntpase, human cance 99.4 2.3E-15 8E-20 162.8 -5.9 160 916-1108 1-171 (189)
188 2i3b_A HCR-ntpase, human cance 99.4 1E-15 3.4E-20 165.7 -9.4 159 199-428 1-169 (189)
189 1ewq_A DNA mismatch repair pro 99.4 4.6E-14 1.6E-18 181.9 3.1 132 186-413 566-704 (765)
190 3szr_A Interferon-induced GTP- 99.4 8.9E-15 3E-19 185.8 -5.3 166 202-436 48-238 (608)
191 2w0m_A SSO2452; RECA, SSPF, un 99.4 5.3E-13 1.8E-17 148.6 9.5 78 345-422 104-192 (235)
192 1pui_A ENGB, probable GTP-bind 99.4 2.2E-14 7.4E-19 157.5 -2.4 165 904-1074 16-202 (210)
193 3szr_A Interferon-induced GTP- 99.4 3E-14 1E-18 180.9 -2.2 136 919-1083 48-197 (608)
194 1nlf_A Regulatory protein REPA 99.3 1.5E-12 5E-17 150.1 10.8 151 195-405 26-181 (279)
195 2qag_C Septin-7; cell cycle, c 99.3 3.3E-14 1.1E-18 171.5 -3.4 153 901-1083 22-178 (418)
196 1wb9_A DNA mismatch repair pro 99.3 1.8E-13 6.2E-18 177.4 3.1 154 186-428 595-751 (800)
197 1s96_A Guanylate kinase, GMP k 99.3 2.7E-14 9.3E-19 158.2 -5.2 131 911-1083 11-141 (219)
198 3kta_B Chromosome segregation 99.3 2.3E-12 7.7E-17 137.0 9.5 75 1020-1097 62-140 (173)
199 2cvh_A DNA repair and recombin 99.3 9.9E-12 3.4E-16 137.2 13.0 154 904-1099 7-185 (220)
200 2bdt_A BH3686; alpha-beta prot 99.3 1.8E-15 6.3E-20 163.7 -17.9 167 916-1109 2-180 (189)
201 1zp6_A Hypothetical protein AT 99.3 8E-14 2.8E-18 150.8 -6.1 140 912-1068 5-147 (191)
202 2qag_B Septin-6, protein NEDD5 99.3 1.8E-13 6.2E-18 164.2 -3.8 170 901-1081 26-218 (427)
203 2ewv_A Twitching motility prot 99.3 1.1E-12 3.6E-17 157.1 2.4 131 904-1097 126-257 (372)
204 3jvv_A Twitching mobility prot 99.2 1.1E-12 3.8E-17 155.4 1.5 59 354-422 188-246 (356)
205 2gza_A Type IV secretion syste 99.2 1.1E-12 3.7E-17 156.5 1.0 137 905-1099 164-302 (361)
206 2qag_C Septin-7; cell cycle, c 99.2 1.5E-12 5.3E-17 157.0 1.9 149 186-404 24-176 (418)
207 3kta_B Chromosome segregation 99.2 5.1E-11 1.7E-15 126.6 13.2 89 342-434 62-157 (173)
208 2bbw_A Adenylate kinase 4, AK4 99.2 1.3E-13 4.5E-18 155.8 -7.6 142 915-1071 26-199 (246)
209 1s96_A Guanylate kinase, GMP k 99.2 6E-13 2.1E-17 147.4 -2.3 148 194-437 11-162 (219)
210 1zp6_A Hypothetical protein AT 99.2 1.7E-13 5.7E-18 148.3 -6.8 142 195-390 5-147 (191)
211 1lw7_A Transcriptional regulat 99.2 1.2E-14 4.2E-19 174.0 -17.4 169 188-419 157-341 (365)
212 2cvh_A DNA repair and recombin 99.2 1.8E-11 6.1E-16 135.1 9.3 78 345-422 85-185 (220)
213 2gza_A Type IV secretion syste 99.2 7.6E-12 2.6E-16 149.2 5.4 136 188-423 164-303 (361)
214 1nij_A Hypothetical protein YJ 99.2 3.1E-14 1E-18 167.1 -16.7 149 917-1083 5-190 (318)
215 1htw_A HI0065; nucleotide-bind 99.2 8.9E-13 3E-17 138.3 -4.0 78 186-270 20-97 (158)
216 1lw7_A Transcriptional regulat 99.2 1.1E-13 3.9E-18 165.6 -12.9 163 905-1097 157-342 (365)
217 2bdt_A BH3686; alpha-beta prot 99.1 4.6E-14 1.6E-18 152.7 -15.1 173 199-433 2-182 (189)
218 2qag_B Septin-6, protein NEDD5 99.1 6.8E-12 2.3E-16 150.6 2.0 167 189-399 30-213 (427)
219 1n0w_A DNA repair protein RAD5 99.1 4E-11 1.4E-15 134.5 8.0 153 906-1099 13-209 (243)
220 1htw_A HI0065; nucleotide-bind 99.1 1.8E-12 6E-17 136.0 -3.9 80 901-986 18-97 (158)
221 2yhs_A FTSY, cell division pro 99.1 7.2E-12 2.5E-16 152.0 0.6 153 906-1080 283-447 (503)
222 2f1r_A Molybdopterin-guanine d 99.1 4E-13 1.4E-17 142.8 -9.6 139 200-394 3-163 (171)
223 1pui_A ENGB, probable GTP-bind 99.1 5.9E-11 2E-15 129.9 7.1 50 343-392 148-198 (210)
224 2bbw_A Adenylate kinase 4, AK4 99.1 9.6E-13 3.3E-17 148.7 -7.9 160 198-392 26-198 (246)
225 3auy_A DNA double-strand break 99.1 1E-10 3.5E-15 140.2 8.6 77 1021-1100 279-362 (371)
226 2f1r_A Molybdopterin-guanine d 99.1 1.4E-12 4.7E-17 138.7 -7.7 137 917-1073 3-164 (171)
227 2kjq_A DNAA-related protein; s 99.1 5.5E-11 1.9E-15 123.6 4.5 95 904-1083 29-126 (149)
228 2rcn_A Probable GTPase ENGC; Y 99.1 4.2E-11 1.4E-15 141.1 3.3 119 906-1037 206-328 (358)
229 2qm8_A GTPase/ATPase; G protei 99.1 1.8E-12 6.1E-17 153.1 -8.5 160 902-1069 41-259 (337)
230 2yhs_A FTSY, cell division pro 99.0 8.2E-12 2.8E-16 151.5 -3.0 81 189-272 283-372 (503)
231 2ewv_A Twitching motility prot 99.0 2.7E-11 9.2E-16 144.9 1.0 131 188-420 127-257 (372)
232 1w1w_A Structural maintenance 99.0 2.4E-10 8.3E-15 139.7 9.2 76 1021-1098 332-411 (430)
233 3ec2_A DNA replication protein 99.0 2.6E-11 9E-16 129.9 0.2 48 1037-1084 97-145 (180)
234 3e70_C DPA, signal recognition 99.0 1.3E-11 4.5E-16 144.6 -2.6 143 913-1081 126-278 (328)
235 2oap_1 GSPE-2, type II secreti 99.0 6.8E-13 2.3E-17 164.4 -14.7 173 903-1090 247-457 (511)
236 1n0w_A DNA repair protein RAD5 99.0 1.7E-10 5.9E-15 129.3 6.0 62 361-422 118-209 (243)
237 2rcn_A Probable GTPase ENGC; Y 99.0 4.7E-11 1.6E-15 140.7 1.2 121 189-359 206-328 (358)
238 1udx_A The GTP-binding protein 99.0 2.8E-11 9.5E-16 146.0 -0.9 159 906-1093 147-319 (416)
239 1nij_A Hypothetical protein YJ 99.0 1.2E-12 4E-17 153.7 -14.0 158 199-406 4-190 (318)
240 2qm8_A GTPase/ATPase; G protei 99.0 7.3E-12 2.5E-16 147.9 -7.3 183 186-392 42-260 (337)
241 3e70_C DPA, signal recognition 99.0 1.8E-11 6.3E-16 143.4 -3.9 73 196-271 126-207 (328)
242 1udx_A The GTP-binding protein 99.0 4E-11 1.4E-15 144.6 -2.2 168 189-414 147-317 (416)
243 1odf_A YGR205W, hypothetical 3 99.0 4.9E-11 1.7E-15 137.6 -1.6 135 197-379 29-169 (290)
244 1p9r_A General secretion pathw 98.9 6.5E-12 2.2E-16 151.7 -9.4 140 893-1045 146-314 (418)
245 2oap_1 GSPE-2, type II secreti 98.9 1.4E-11 4.8E-16 152.7 -8.8 85 186-273 247-331 (511)
246 3auy_A DNA double-strand break 98.9 2.7E-09 9.3E-14 127.8 11.2 75 342-420 278-359 (371)
247 1odf_A YGR205W, hypothetical 3 98.9 5.7E-11 1.9E-15 137.1 -4.7 125 914-1057 29-169 (290)
248 3c8u_A Fructokinase; YP_612366 98.8 4.2E-11 1.4E-15 131.6 -6.8 148 913-1092 19-168 (208)
249 1p9r_A General secretion pathw 98.8 4.9E-11 1.7E-15 144.1 -6.8 137 186-367 156-314 (418)
250 2yv5_A YJEQ protein; hydrolase 98.8 5.7E-10 2E-14 129.7 2.0 125 196-357 162-300 (302)
251 3ec2_A DNA replication protein 98.8 9.4E-10 3.2E-14 117.8 3.2 48 360-408 98-146 (180)
252 3lda_A DNA repair protein RAD5 98.8 1.6E-09 5.3E-14 130.2 5.4 63 361-423 272-364 (400)
253 3lda_A DNA repair protein RAD5 98.8 9.9E-09 3.4E-13 123.3 12.1 156 906-1099 167-363 (400)
254 1sxj_E Activator 1 40 kDa subu 98.8 2.3E-09 8E-14 127.3 6.7 162 919-1120 39-203 (354)
255 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.9E-11 9.7E-16 144.5 -9.9 170 912-1109 16-209 (392)
256 2yv5_A YJEQ protein; hydrolase 98.8 5E-10 1.7E-14 130.3 -0.1 115 913-1036 162-301 (302)
257 1lvg_A Guanylate kinase, GMP k 98.8 5.4E-12 1.9E-16 137.7 -16.6 56 1033-1097 116-172 (198)
258 2x8a_A Nuclear valosin-contain 98.7 1.8E-11 6.1E-16 140.4 -14.7 142 186-387 33-190 (274)
259 3c8u_A Fructokinase; YP_612366 98.7 1.1E-10 3.9E-15 128.2 -8.5 30 196-225 19-48 (208)
260 2kjq_A DNAA-related protein; s 98.7 5.8E-09 2E-13 108.2 4.8 47 360-408 81-128 (149)
261 1in4_A RUVB, holliday junction 98.7 1.7E-10 5.7E-15 136.4 -8.3 146 902-1071 30-195 (334)
262 1sxj_E Activator 1 40 kDa subu 98.7 8E-09 2.7E-13 122.7 5.6 136 202-407 39-176 (354)
263 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.9E-11 6.7E-16 145.9 -17.0 168 195-431 16-209 (392)
264 2x8a_A Nuclear valosin-contain 98.7 1.6E-11 5.3E-16 141.0 -17.3 129 902-1051 32-164 (274)
265 2dr3_A UPF0273 protein PH0284; 98.7 5.3E-08 1.8E-12 109.1 11.0 68 1031-1098 117-196 (247)
266 1in4_A RUVB, holliday junction 98.6 1.4E-10 4.9E-15 137.0 -11.4 156 186-395 31-197 (334)
267 1sq5_A Pantothenate kinase; P- 98.6 4.3E-10 1.5E-14 131.2 -7.3 129 904-1055 49-199 (308)
268 1lvg_A Guanylate kinase, GMP k 98.6 1.3E-11 4.3E-16 134.8 -19.1 57 355-421 116-173 (198)
269 1t9h_A YLOQ, probable GTPase E 98.6 3.9E-09 1.3E-13 122.1 0.3 111 911-1029 168-302 (307)
270 2r6a_A DNAB helicase, replicat 98.6 9.4E-09 3.2E-13 126.5 3.7 173 903-1099 190-399 (454)
271 3lnc_A Guanylate kinase, GMP k 98.6 9.2E-11 3.1E-15 131.0 -13.3 156 903-1068 14-176 (231)
272 1u0l_A Probable GTPase ENGC; p 98.6 4.1E-09 1.4E-13 122.6 0.1 73 195-271 165-259 (301)
273 1u0l_A Probable GTPase ENGC; p 98.6 9.1E-09 3.1E-13 119.6 0.6 100 912-1014 165-288 (301)
274 1t9h_A YLOQ, probable GTPase E 98.6 1.4E-08 4.8E-13 117.5 2.0 72 194-269 168-248 (307)
275 1vma_A Cell division protein F 98.5 5.5E-08 1.9E-12 112.8 6.2 114 192-392 97-213 (306)
276 1vma_A Cell division protein F 98.5 3.1E-08 1.1E-12 114.8 3.1 112 909-1068 97-211 (306)
277 1ls1_A Signal recognition part 98.5 1.5E-07 5.2E-12 108.8 8.2 118 907-1068 91-209 (295)
278 2dr3_A UPF0273 protein PH0284; 98.5 5.2E-07 1.8E-11 100.9 12.3 61 361-421 127-196 (247)
279 2zr9_A Protein RECA, recombina 98.5 2.2E-07 7.7E-12 109.9 9.2 147 911-1107 56-237 (349)
280 2r6a_A DNAB helicase, replicat 98.4 2.9E-07 9.9E-12 113.2 10.0 184 185-424 189-401 (454)
281 3euj_A Chromosome partition pr 98.4 3E-08 1E-12 121.1 1.0 54 186-243 17-70 (483)
282 1sq5_A Pantothenate kinase; P- 98.4 8.7E-09 3E-13 120.2 -3.6 73 197-274 78-155 (308)
283 3k1j_A LON protease, ATP-depen 98.4 1.8E-08 6.3E-13 128.3 -2.3 159 186-389 47-227 (604)
284 2px0_A Flagellar biosynthesis 98.4 3.3E-07 1.1E-11 105.9 7.6 139 914-1102 103-245 (296)
285 3k1j_A LON protease, ATP-depen 98.4 9.6E-09 3.3E-13 130.9 -6.2 158 901-1067 45-227 (604)
286 1oix_A RAS-related protein RAB 98.3 4.8E-08 1.7E-12 105.4 -0.8 38 1029-1068 152-189 (191)
287 1iy2_A ATP-dependent metallopr 98.3 1.1E-09 3.8E-14 125.8 -15.5 122 902-1043 61-190 (278)
288 3tr0_A Guanylate kinase, GMP k 98.3 2.9E-08 9.8E-13 108.2 -3.6 70 193-269 1-73 (205)
289 3euj_A Chromosome partition pr 98.3 7.2E-08 2.5E-12 117.7 -0.4 52 903-957 17-68 (483)
290 2px0_A Flagellar biosynthesis 98.3 9.3E-07 3.2E-11 102.2 8.3 143 197-427 103-247 (296)
291 1ls1_A Signal recognition part 98.3 1.3E-06 4.4E-11 101.0 9.1 118 190-390 91-209 (295)
292 3tr0_A Guanylate kinase, GMP k 98.3 3.9E-08 1.3E-12 107.1 -3.5 64 910-979 1-67 (205)
293 2ius_A DNA translocase FTSK; n 98.2 2.6E-08 8.9E-13 122.4 -6.6 167 908-1084 159-344 (512)
294 2zr9_A Protein RECA, recombina 98.2 7.1E-07 2.4E-11 105.6 5.8 78 352-429 127-237 (349)
295 1ixz_A ATP-dependent metallopr 98.2 2E-09 6.9E-14 121.8 -15.6 126 902-1049 37-170 (254)
296 2ius_A DNA translocase FTSK; n 98.2 1.6E-07 5.5E-12 115.4 -0.3 166 191-407 159-344 (512)
297 1iy2_A ATP-dependent metallopr 98.2 2.9E-09 1E-13 122.3 -15.2 75 187-268 63-141 (278)
298 2f9l_A RAB11B, member RAS onco 98.1 2.7E-07 9.1E-12 100.1 -0.3 37 1031-1069 130-166 (199)
299 1ixz_A ATP-dependent metallopr 98.1 4.6E-09 1.6E-13 118.9 -15.0 47 187-240 39-85 (254)
300 2ce7_A Cell division protein F 98.1 2.6E-06 9E-11 104.4 6.3 113 904-1083 39-165 (476)
301 3lnc_A Guanylate kinase, GMP k 98.0 1E-06 3.4E-11 98.1 1.7 40 186-225 14-54 (231)
302 1svm_A Large T antigen; AAA+ f 98.0 4.4E-08 1.5E-12 116.6 -9.9 140 903-1051 156-312 (377)
303 1oix_A RAS-related protein RAB 98.0 1.9E-06 6.4E-11 92.9 3.8 38 350-389 151-188 (191)
304 1qhl_A Protein (cell division 98.0 1.6E-07 5.6E-12 104.0 -5.5 59 193-255 22-91 (227)
305 3hr8_A Protein RECA; alpha and 98.0 1.8E-06 6.1E-11 101.9 2.6 78 905-984 48-128 (356)
306 2qtf_A Protein HFLX, GTP-bindi 98.0 5.1E-06 1.7E-10 98.8 5.8 158 201-392 181-353 (364)
307 3hr8_A Protein RECA; alpha and 97.9 1.3E-05 4.3E-10 94.6 8.6 32 194-225 56-87 (356)
308 2ce7_A Cell division protein F 97.9 1.7E-05 5.8E-10 97.2 9.4 59 347-405 93-164 (476)
309 4eun_A Thermoresistant glucoki 97.9 7.6E-07 2.6E-11 96.8 -2.9 57 910-972 23-81 (200)
310 1qhl_A Protein (cell division 97.9 3.6E-07 1.2E-11 101.3 -6.2 59 910-971 22-91 (227)
311 2qtf_A Protein HFLX, GTP-bindi 97.8 1.4E-06 4.6E-11 103.8 -2.1 141 918-1070 181-353 (364)
312 4a1f_A DNAB helicase, replicat 97.8 1.8E-05 6.3E-10 92.6 7.0 138 185-421 32-170 (338)
313 4eun_A Thermoresistant glucoki 97.8 5.8E-07 2E-11 97.8 -5.7 70 193-269 23-94 (200)
314 4a1f_A DNAB helicase, replicat 97.7 1.4E-05 4.9E-10 93.5 4.1 129 904-1080 34-164 (338)
315 2e87_A Hypothetical protein PH 97.7 6.5E-05 2.2E-09 89.2 9.8 60 1021-1082 230-292 (357)
316 3kta_A Chromosome segregation 97.7 1.2E-05 4.1E-10 85.7 3.0 36 190-226 18-53 (182)
317 2f9l_A RAB11B, member RAS onco 97.7 1.4E-05 4.8E-10 86.4 3.3 37 353-391 130-166 (199)
318 2xau_A PRE-mRNA-splicing facto 97.7 1E-05 3.5E-10 105.5 2.2 75 1021-1096 189-265 (773)
319 1jjv_A Dephospho-COA kinase; P 97.6 2.9E-05 9.8E-10 84.5 4.4 127 918-1097 4-131 (206)
320 2j41_A Guanylate kinase; GMP, 97.6 1.6E-05 5.4E-10 86.3 2.3 32 195-226 2-33 (207)
321 2dy1_A Elongation factor G; tr 97.6 1.4E-05 4.9E-10 102.5 1.8 133 910-1084 3-138 (665)
322 1zu4_A FTSY; GTPase, signal re 97.6 8.6E-06 2.9E-10 95.1 -0.4 80 188-270 94-186 (320)
323 2j41_A Guanylate kinase; GMP, 97.5 2.4E-05 8.2E-10 84.9 2.5 30 912-941 2-31 (207)
324 3bh0_A DNAB-like replicative h 97.5 0.00017 5.7E-09 84.1 9.7 36 903-938 55-90 (315)
325 3vaa_A Shikimate kinase, SK; s 97.5 3.9E-05 1.3E-09 83.2 3.5 40 184-223 10-49 (199)
326 3a00_A Guanylate kinase, GMP k 97.5 1.8E-05 6.1E-10 84.9 0.7 27 199-225 1-27 (186)
327 2dhr_A FTSH; AAA+ protein, hex 97.5 1.2E-06 4.1E-11 108.0 -9.7 49 187-242 54-102 (499)
328 4e22_A Cytidylate kinase; P-lo 97.5 1.1E-05 3.9E-10 90.9 -1.3 63 905-972 19-96 (252)
329 4e22_A Cytidylate kinase; P-lo 97.4 9E-06 3.1E-10 91.8 -2.6 62 188-255 19-95 (252)
330 3uie_A Adenylyl-sulfate kinase 97.4 6.1E-06 2.1E-10 89.6 -3.9 52 186-241 12-65 (200)
331 2dhr_A FTSH; AAA+ protein, hex 97.4 1.2E-06 4.1E-11 108.0 -10.9 126 903-1051 53-187 (499)
332 1zu4_A FTSY; GTPase, signal re 97.4 2.7E-05 9.3E-10 90.8 0.8 78 905-984 94-184 (320)
333 3nwj_A ATSK2; P loop, shikimat 97.4 1.4E-05 4.8E-10 89.9 -1.7 38 903-940 32-72 (250)
334 3kta_A Chromosome segregation 97.4 5.3E-05 1.8E-09 80.6 2.8 37 904-941 13-51 (182)
335 3a00_A Guanylate kinase, GMP k 97.4 3E-05 1E-09 83.1 0.3 26 916-941 1-26 (186)
336 3vaa_A Shikimate kinase, SK; s 97.4 6.8E-05 2.3E-09 81.2 3.1 38 903-940 12-49 (199)
337 1ega_A Protein (GTP-binding pr 97.3 0.0001 3.5E-09 85.4 4.7 152 913-1094 6-170 (301)
338 3t34_A Dynamin-related protein 97.3 9.9E-06 3.4E-10 96.4 -4.2 57 1023-1080 155-212 (360)
339 2vp4_A Deoxynucleoside kinase; 97.3 4.7E-05 1.6E-09 84.6 1.1 42 909-956 13-54 (230)
340 2xau_A PRE-mRNA-splicing facto 97.3 9.2E-05 3.2E-09 96.5 3.9 71 344-415 190-261 (773)
341 1kgd_A CASK, peripheral plasma 97.3 7.9E-05 2.7E-09 79.4 2.7 38 197-236 3-40 (180)
342 1fnn_A CDC6P, cell division co 97.3 0.00052 1.8E-08 81.8 10.1 44 1039-1083 124-170 (389)
343 1v5w_A DMC1, meiotic recombina 97.3 0.00056 1.9E-08 80.7 10.0 141 905-1082 110-274 (343)
344 2vp4_A Deoxynucleoside kinase; 97.3 5.1E-05 1.7E-09 84.3 0.8 41 193-240 14-54 (230)
345 3bh0_A DNAB-like replicative h 97.2 0.00058 2E-08 79.5 9.2 132 185-401 54-187 (315)
346 3nwj_A ATSK2; P loop, shikimat 97.2 3.2E-05 1.1E-09 86.9 -1.8 38 186-223 32-72 (250)
347 2z43_A DNA repair and recombin 97.2 0.00073 2.5E-08 79.0 9.7 145 905-1081 95-257 (324)
348 1kgd_A CASK, peripheral plasma 97.2 0.00012 4.1E-09 78.0 2.5 39 914-953 3-41 (180)
349 3b9p_A CG5977-PA, isoform A; A 97.1 0.001 3.5E-08 76.5 10.2 70 1024-1093 97-183 (297)
350 3uie_A Adenylyl-sulfate kinase 97.1 7.1E-05 2.4E-09 81.1 0.2 51 903-956 12-64 (200)
351 3tau_A Guanylate kinase, GMP k 97.1 0.00019 6.3E-09 78.4 3.4 29 197-225 6-34 (208)
352 1svm_A Large T antigen; AAA+ f 97.1 6.9E-05 2.4E-09 89.2 -0.2 44 186-235 156-199 (377)
353 1v5w_A DMC1, meiotic recombina 97.1 0.0023 7.9E-08 75.4 12.3 34 189-222 111-145 (343)
354 2e87_A Hypothetical protein PH 97.1 0.0011 3.7E-08 78.7 9.5 56 344-402 231-287 (357)
355 2qt1_A Nicotinamide riboside k 97.0 0.0003 1E-08 76.4 4.1 31 194-224 16-46 (207)
356 3t34_A Dynamin-related protein 97.0 0.0015 5.2E-08 77.5 10.3 34 186-222 24-57 (360)
357 1knq_A Gluconate kinase; ALFA/ 97.0 0.00016 5.4E-09 76.3 1.5 36 197-239 6-41 (175)
358 3b9p_A CG5977-PA, isoform A; A 97.0 0.0023 8E-08 73.4 11.4 27 197-223 52-78 (297)
359 3tau_A Guanylate kinase, GMP k 97.0 0.00026 8.8E-09 77.3 2.9 28 914-941 6-33 (208)
360 1rz3_A Hypothetical protein rb 97.0 0.00012 4.2E-09 79.4 0.3 41 196-239 19-59 (201)
361 2z4s_A Chromosomal replication 96.9 0.00044 1.5E-08 84.4 4.7 70 1039-1109 193-264 (440)
362 2z43_A DNA repair and recombin 96.9 0.0029 9.8E-08 74.0 11.1 35 188-222 95-130 (324)
363 2qt1_A Nicotinamide riboside k 96.8 0.00054 1.8E-08 74.4 3.9 30 911-940 16-45 (207)
364 2dy1_A Elongation factor G; tr 96.8 0.00011 3.7E-09 94.4 -2.0 48 193-242 3-50 (665)
365 1knq_A Gluconate kinase; ALFA/ 96.8 0.00027 9.1E-09 74.6 1.3 36 914-955 6-41 (175)
366 3tqc_A Pantothenate kinase; bi 96.8 8.9E-05 3E-09 86.2 -2.6 41 901-941 71-117 (321)
367 1fnn_A CDC6P, cell division co 96.8 0.0047 1.6E-07 73.4 12.1 44 361-405 124-169 (389)
368 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00054 1.9E-08 70.6 3.3 30 907-937 15-44 (149)
369 3cr8_A Sulfate adenylyltranfer 96.8 0.00026 8.8E-09 88.4 0.5 43 194-239 364-408 (552)
370 3ney_A 55 kDa erythrocyte memb 96.7 0.00046 1.6E-08 74.5 2.4 29 196-224 16-44 (197)
371 3tqc_A Pantothenate kinase; bi 96.7 0.00014 4.6E-09 84.7 -1.9 37 188-224 75-117 (321)
372 2z4s_A Chromosomal replication 96.7 0.00028 9.4E-09 86.2 0.7 69 361-430 193-263 (440)
373 1lv7_A FTSH; alpha/beta domain 96.7 0.0037 1.3E-07 70.2 10.0 34 189-224 37-70 (257)
374 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00073 2.5E-08 69.7 3.8 28 192-220 17-44 (149)
375 1kag_A SKI, shikimate kinase I 96.7 0.00051 1.8E-08 72.1 2.1 27 198-224 3-29 (173)
376 1rz3_A Hypothetical protein rb 96.7 0.0003 1E-08 76.3 0.2 41 912-954 18-58 (201)
377 3cf0_A Transitional endoplasmi 96.6 0.00098 3.4E-08 77.0 4.3 30 911-940 44-73 (301)
378 2q6t_A DNAB replication FORK h 96.6 0.0013 4.4E-08 80.4 5.5 173 904-1098 188-397 (444)
379 1ypw_A Transitional endoplasmi 96.6 0.0011 3.8E-08 86.9 5.0 31 911-941 233-263 (806)
380 3ney_A 55 kDa erythrocyte memb 96.6 0.00065 2.2E-08 73.3 2.3 28 914-941 17-44 (197)
381 3cf0_A Transitional endoplasmi 96.6 0.0042 1.4E-07 71.7 9.3 29 195-223 45-73 (301)
382 3kl4_A SRP54, signal recogniti 96.6 0.0021 7.1E-08 77.6 6.7 50 1032-1081 171-223 (433)
383 2qby_A CDC6 homolog 1, cell di 96.6 0.00047 1.6E-08 81.9 1.1 27 914-940 43-69 (386)
384 1ypw_A Transitional endoplasmi 96.5 0.0013 4.5E-08 86.2 5.1 32 194-225 233-264 (806)
385 2p67_A LAO/AO transport system 96.5 0.00029 9.9E-09 83.1 -1.6 49 187-238 44-92 (341)
386 2gj8_A MNME, tRNA modification 96.4 0.0033 1.1E-07 66.0 6.0 27 197-223 2-28 (172)
387 2www_A Methylmalonic aciduria 96.4 0.00073 2.5E-08 79.8 0.9 40 197-239 72-111 (349)
388 1kag_A SKI, shikimate kinase I 96.4 0.001 3.5E-08 69.8 1.9 27 915-941 3-29 (173)
389 1u94_A RECA protein, recombina 96.4 0.0083 2.8E-07 70.8 9.9 34 905-938 50-85 (356)
390 3cr8_A Sulfate adenylyltranfer 96.3 0.00056 1.9E-08 85.3 -0.2 42 912-955 365-408 (552)
391 2gj8_A MNME, tRNA modification 96.3 0.0035 1.2E-07 65.8 5.5 27 914-940 2-28 (172)
392 1u94_A RECA protein, recombina 96.2 0.04 1.4E-06 65.0 14.5 29 194-222 58-86 (356)
393 3kl4_A SRP54, signal recogniti 96.2 0.0079 2.7E-07 72.6 8.6 37 198-237 96-132 (433)
394 3qks_A DNA double-strand break 96.1 0.0023 7.9E-08 69.5 3.3 29 908-937 16-44 (203)
395 3bgw_A DNAB-like replicative h 96.1 0.011 3.6E-07 72.2 9.5 35 904-938 185-219 (444)
396 4fcw_A Chaperone protein CLPB; 96.1 0.012 4.1E-07 67.8 9.4 28 198-225 46-73 (311)
397 3m6a_A ATP-dependent protease 96.1 0.00089 3E-08 83.9 -0.2 47 187-237 97-143 (543)
398 4eaq_A DTMP kinase, thymidylat 96.1 0.0025 8.7E-08 70.5 3.5 37 189-225 13-52 (229)
399 2qby_A CDC6 homolog 1, cell di 96.1 0.0016 5.5E-08 77.2 1.8 28 197-224 43-70 (386)
400 2p67_A LAO/AO transport system 96.1 0.0007 2.4E-08 79.8 -1.3 39 902-940 42-80 (341)
401 2q6t_A DNAB replication FORK h 96.1 0.012 4E-07 71.9 9.5 37 186-222 187-223 (444)
402 1m2o_B GTP-binding protein SAR 96.0 0.0037 1.3E-07 66.6 4.4 35 187-222 12-46 (190)
403 1m2o_B GTP-binding protein SAR 96.0 0.0043 1.5E-07 66.2 4.6 49 904-953 12-66 (190)
404 1mky_A Probable GTP-binding pr 96.0 0.0056 1.9E-07 74.6 6.2 41 200-240 181-230 (439)
405 3llm_A ATP-dependent RNA helic 96.0 0.0014 4.9E-08 72.7 0.9 66 1024-1091 162-228 (235)
406 3qks_A DNA double-strand break 96.0 0.0034 1.2E-07 68.1 3.8 28 192-220 17-44 (203)
407 3h4m_A Proteasome-activating n 96.0 0.0056 1.9E-07 69.7 5.8 28 913-940 48-75 (285)
408 3lxx_A GTPase IMAP family memb 96.0 0.025 8.6E-07 62.6 10.8 42 1039-1080 111-154 (239)
409 1f6b_A SAR1; gtpases, N-termin 95.9 0.0021 7.2E-08 69.2 1.8 35 187-222 14-48 (198)
410 1mky_A Probable GTP-binding pr 95.9 0.0055 1.9E-07 74.7 5.5 39 917-955 181-229 (439)
411 4eaq_A DTMP kinase, thymidylat 95.9 0.0032 1.1E-07 69.8 3.0 36 906-941 13-51 (229)
412 3h4m_A Proteasome-activating n 95.9 0.012 4.1E-07 67.0 7.8 28 196-223 48-75 (285)
413 1m7g_A Adenylylsulfate kinase; 95.8 0.0014 4.9E-08 71.4 -0.1 42 195-239 21-64 (211)
414 2b8t_A Thymidine kinase; deoxy 95.8 0.0048 1.6E-07 67.9 4.1 54 361-420 88-150 (223)
415 2i1q_A DNA repair and recombin 95.8 0.02 6.9E-07 66.6 9.6 34 905-938 86-120 (322)
416 3ice_A Transcription terminati 95.8 0.0017 5.8E-08 76.2 0.4 32 908-939 166-197 (422)
417 2w58_A DNAI, primosome compone 95.8 0.0039 1.3E-07 67.1 3.3 23 917-939 55-77 (202)
418 1l8q_A Chromosomal replication 95.8 0.0086 2.9E-07 69.7 6.2 45 1038-1082 96-141 (324)
419 1f6b_A SAR1; gtpases, N-termin 95.8 0.0027 9.1E-08 68.3 1.7 35 904-939 14-48 (198)
420 1y63_A LMAJ004144AAA protein; 95.7 0.0041 1.4E-07 66.2 3.1 32 191-222 2-33 (184)
421 2pez_A Bifunctional 3'-phospho 95.7 0.0041 1.4E-07 65.7 3.1 39 197-239 3-43 (179)
422 2www_A Methylmalonic aciduria 95.7 0.002 6.9E-08 76.1 0.5 40 914-955 72-111 (349)
423 2qor_A Guanylate kinase; phosp 95.7 0.0042 1.4E-07 67.3 2.9 29 196-224 9-37 (204)
424 1l8q_A Chromosomal replication 95.7 0.0054 1.8E-07 71.5 4.0 46 361-407 97-143 (324)
425 2b8t_A Thymidine kinase; deoxy 95.6 0.015 5.3E-07 63.8 7.2 53 1040-1097 89-150 (223)
426 3m6a_A ATP-dependent protease 95.6 0.0023 7.8E-08 80.2 0.7 49 903-954 96-144 (543)
427 1cke_A CK, MSSA, protein (cyti 95.6 0.0045 1.6E-07 67.9 2.9 25 199-223 5-29 (227)
428 1np6_A Molybdopterin-guanine d 95.6 0.0039 1.3E-07 66.0 2.1 40 200-239 7-46 (174)
429 2pez_A Bifunctional 3'-phospho 95.5 0.0051 1.7E-07 65.0 2.7 27 914-940 3-29 (179)
430 2ohf_A Protein OLA1, GTP-bindi 95.5 0.006 2E-07 72.7 3.5 31 192-222 15-45 (396)
431 2qag_A Septin-2, protein NEDD5 95.5 0.0015 5E-08 77.6 -1.8 33 186-224 30-62 (361)
432 3llm_A ATP-dependent RNA helic 95.5 0.0024 8.2E-08 70.9 -0.0 65 347-414 163-228 (235)
433 2qag_A Septin-2, protein NEDD5 95.4 0.0014 4.9E-08 77.7 -2.1 33 902-940 29-61 (361)
434 2wji_A Ferrous iron transport 95.4 0.014 4.9E-07 60.4 5.7 23 201-223 5-27 (165)
435 2qor_A Guanylate kinase; phosp 95.4 0.0054 1.8E-07 66.4 2.5 28 913-940 9-36 (204)
436 1jjv_A Dephospho-COA kinase; P 95.4 0.0069 2.4E-07 65.5 3.3 69 346-420 61-131 (206)
437 1cke_A CK, MSSA, protein (cyti 95.4 0.0054 1.8E-07 67.2 2.4 56 916-971 5-73 (227)
438 2wji_A Ferrous iron transport 95.4 0.013 4.6E-07 60.6 5.3 23 918-940 5-27 (165)
439 1y63_A LMAJ004144AAA protein; 95.3 0.0065 2.2E-07 64.6 2.8 32 908-939 2-33 (184)
440 2yvu_A Probable adenylyl-sulfa 95.3 0.0041 1.4E-07 66.2 1.1 29 197-225 11-39 (186)
441 3d8b_A Fidgetin-like protein 1 95.3 0.031 1.1E-06 66.1 8.7 27 914-940 115-141 (357)
442 2ffh_A Protein (FFH); SRP54, s 95.2 0.0046 1.6E-07 74.5 1.3 45 190-239 91-135 (425)
443 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0024 8.2E-08 74.7 -1.2 37 187-223 10-48 (359)
444 2wjg_A FEOB, ferrous iron tran 95.2 0.017 5.6E-07 61.0 5.3 22 918-939 9-30 (188)
445 3bgw_A DNAB-like replicative h 95.1 0.085 2.9E-06 64.1 11.9 37 185-221 183-219 (444)
446 2p5t_B PEZT; postsegregational 95.0 0.0051 1.7E-07 69.1 0.9 41 195-240 28-68 (253)
447 2wjg_A FEOB, ferrous iron tran 95.0 0.013 4.6E-07 61.7 4.1 22 201-222 9-30 (188)
448 1ega_A Protein (GTP-binding pr 95.0 0.0084 2.9E-07 69.2 2.7 44 345-395 101-147 (301)
449 3lxx_A GTPase IMAP family memb 95.0 0.07 2.4E-06 58.9 10.1 25 201-225 31-55 (239)
450 2if2_A Dephospho-COA kinase; a 95.0 0.0085 2.9E-07 64.6 2.5 21 201-221 3-23 (204)
451 3cm0_A Adenylate kinase; ATP-b 95.0 0.011 3.8E-07 62.5 3.3 26 197-222 2-27 (186)
452 2v1u_A Cell division control p 95.0 0.019 6.5E-07 68.0 5.7 27 914-940 42-68 (387)
453 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.062 2.1E-06 59.9 9.6 27 197-223 37-63 (262)
454 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.18 6.2E-06 58.5 13.8 28 196-223 42-69 (322)
455 1m7g_A Adenylylsulfate kinase; 94.9 0.0045 1.6E-07 67.4 0.2 40 912-953 21-62 (211)
456 2ga8_A Hypothetical 39.9 kDa p 94.9 0.0031 1.1E-07 73.7 -1.2 37 904-940 10-48 (359)
457 3ice_A Transcription terminati 94.9 0.0076 2.6E-07 70.8 2.0 33 191-223 166-198 (422)
458 1j8m_F SRP54, signal recogniti 94.9 0.0035 1.2E-07 72.2 -1.1 46 190-239 89-135 (297)
459 3d8b_A Fidgetin-like protein 1 94.8 0.081 2.8E-06 62.4 10.6 27 197-223 115-141 (357)
460 1q57_A DNA primase/helicase; d 94.8 0.17 5.9E-06 62.6 14.0 36 186-221 229-264 (503)
461 2ohf_A Protein OLA1, GTP-bindi 94.8 0.012 4E-07 70.2 3.0 45 910-954 16-69 (396)
462 2if2_A Dephospho-COA kinase; a 94.7 0.0095 3.3E-07 64.2 2.1 21 918-938 3-23 (204)
463 1np6_A Molybdopterin-guanine d 94.7 0.013 4.4E-07 61.9 2.9 38 917-954 7-45 (174)
464 1xp8_A RECA protein, recombina 94.7 0.046 1.6E-06 64.7 7.9 34 905-938 61-96 (366)
465 1xp8_A RECA protein, recombina 94.7 0.2 6.9E-06 59.2 13.3 28 194-221 69-96 (366)
466 1qhx_A CPT, protein (chloramph 94.6 0.017 5.6E-07 60.7 3.5 26 199-224 3-28 (178)
467 1sxj_C Activator 1 40 kDa subu 94.6 0.0041 1.4E-07 73.0 -1.4 40 186-225 31-72 (340)
468 3t61_A Gluconokinase; PSI-biol 94.6 0.011 3.9E-07 63.6 2.2 25 199-223 18-42 (202)
469 3kb2_A SPBC2 prophage-derived 94.6 0.016 5.3E-07 60.3 3.1 23 201-223 3-25 (173)
470 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.11 3.7E-06 60.4 10.6 28 913-940 42-69 (322)
471 1q57_A DNA primase/helicase; d 94.5 0.14 4.9E-06 63.2 12.3 35 904-938 230-264 (503)
472 2yvu_A Probable adenylyl-sulfa 94.5 0.015 5.1E-07 61.7 2.7 29 912-940 9-37 (186)
473 2rhm_A Putative kinase; P-loop 94.4 0.017 5.9E-07 61.3 3.2 27 197-223 3-29 (193)
474 2qz4_A Paraplegin; AAA+, SPG7, 94.4 0.044 1.5E-06 61.2 6.5 26 914-939 37-62 (262)
475 3cmw_A Protein RECA, recombina 94.3 0.061 2.1E-06 74.5 8.8 148 906-1102 720-904 (1706)
476 1kht_A Adenylate kinase; phosp 94.3 0.02 7E-07 60.5 3.4 25 199-223 3-27 (192)
477 2ffh_A Protein (FFH); SRP54, s 94.3 0.009 3.1E-07 72.0 0.6 46 907-956 91-136 (425)
478 2zej_A Dardarin, leucine-rich 94.3 0.02 6.8E-07 60.5 3.1 23 201-223 4-26 (184)
479 3io5_A Recombination and repai 94.2 0.024 8.2E-07 65.1 3.8 26 911-937 24-49 (333)
480 2p5t_B PEZT; postsegregational 94.2 0.0089 3.1E-07 67.1 0.3 45 905-954 22-66 (253)
481 3r20_A Cytidylate kinase; stru 94.1 0.022 7.5E-07 63.0 3.2 24 200-223 10-33 (233)
482 3cm0_A Adenylate kinase; ATP-b 94.1 0.02 6.9E-07 60.5 2.9 25 914-938 2-26 (186)
483 1j8m_F SRP54, signal recogniti 94.1 0.0078 2.7E-07 69.3 -0.5 46 907-955 89-135 (297)
484 2v1u_A Cell division control p 94.1 0.05 1.7E-06 64.2 6.5 27 197-223 42-68 (387)
485 2zej_A Dardarin, leucine-rich 94.1 0.023 7.9E-07 60.0 3.1 22 918-939 4-25 (184)
486 1sxj_C Activator 1 40 kDa subu 94.0 0.0071 2.4E-07 71.0 -1.0 39 902-940 30-70 (340)
487 2j9r_A Thymidine kinase; TK1, 94.0 0.12 4.2E-06 56.0 8.7 53 362-420 101-162 (214)
488 3hu3_A Transitional endoplasmi 94.0 0.059 2E-06 66.3 7.0 28 196-223 235-262 (489)
489 3t61_A Gluconokinase; PSI-biol 94.0 0.02 6.7E-07 61.7 2.5 25 916-940 18-42 (202)
490 4b4t_L 26S protease subunit RP 93.9 0.15 5.1E-06 61.5 10.1 29 196-224 212-240 (437)
491 3lw7_A Adenylate kinase relate 93.9 0.027 9.1E-07 58.4 3.2 19 201-219 3-21 (179)
492 3trf_A Shikimate kinase, SK; a 93.9 0.027 9.3E-07 59.5 3.3 26 198-223 4-29 (185)
493 1q3t_A Cytidylate kinase; nucl 93.9 0.023 7.9E-07 62.9 2.8 28 196-223 13-40 (236)
494 2plr_A DTMP kinase, probable t 93.9 0.03 1E-06 60.3 3.7 27 198-224 3-29 (213)
495 1ly1_A Polynucleotide kinase; 93.8 0.03 1E-06 58.5 3.4 22 200-221 3-24 (181)
496 2v54_A DTMP kinase, thymidylat 93.8 0.03 1E-06 60.0 3.5 27 197-223 2-28 (204)
497 1xx6_A Thymidine kinase; NESG, 93.7 0.054 1.8E-06 58.0 5.3 53 1040-1097 81-142 (191)
498 4b4t_K 26S protease regulatory 93.7 0.2 7E-06 60.2 10.8 29 196-224 203-231 (428)
499 3iij_A Coilin-interacting nucl 93.7 0.027 9.1E-07 59.3 2.8 25 198-222 10-34 (180)
500 1qhx_A CPT, protein (chloramph 93.7 0.029 9.9E-07 58.8 3.1 26 916-941 3-28 (178)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.2e-72 Score=763.47 Aligned_cols=214 Identities=28% Similarity=0.371 Sum_probs=177.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.|+|+++.++.. +..++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 58899998876421 23469999999999999999999999999999999999887 4589999999987
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgG 1026 (1472)
.+ ..+|+.++||||++.++.. |++|||.|+..-....++.+.++++..++.++ .|+.+|..| .+||||
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgG 1221 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGG 1221 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHH
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCC-cccCHH
Confidence 54 5678899999999999864 99999977532111233556666666666443 345555443 579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+++.+.|++.|+++. +|+|||+++|+++ ....||+|+||++ |+++..|
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~G 1297 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKG 1297 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999875 4899999999986 4678999999975 7999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 1298 th 1299 (1321)
T 4f4c_A 1298 TH 1299 (1321)
T ss_dssp CH
T ss_pred CH
Confidence 85
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-65 Score=699.70 Aligned_cols=214 Identities=27% Similarity=0.363 Sum_probs=173.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++.. ++.++|+|||++|+|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 57889988776321 12469999999999999999999999999999999999887 4599999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgG 1026 (1472)
.. ...++.+|||+|++.++ ..||+||+.++...+...++.+.++++..++.+. .|+.+|.. +..||||
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~-G~~LSgG 1175 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK-GTQLSGG 1175 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT-SCSSCHH
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCC-CCccCHH
Confidence 43 44667899999999776 5699999987543222233445555665555433 24445543 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+|||||||||+.+++.|++.|+++ .+|+|||+++|+++. ...||++++|++ |+++..|
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~~dri~vl~~-G~i~~~g 1251 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQNADLIVVIQN-GKVKEHG 1251 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGSCSEEEEEET-BEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999886 458999999999874 466999999985 8999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 1252 ~~ 1253 (1284)
T 3g5u_A 1252 TH 1253 (1284)
T ss_dssp CH
T ss_pred CH
Confidence 85
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4e-56 Score=561.57 Aligned_cols=188 Identities=26% Similarity=0.328 Sum_probs=158.0
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+ .+.+||++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 68999999999999999999999999999999998764 4788875 23589999998877889999988
Q ss_pred HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 985 ~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
.............++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 513 (607)
T 3bk7_A 439 SKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513 (607)
T ss_dssp HHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 6531111112355788899999987777654 47999999999999999999999999999999999999999999
Q ss_pred HHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCCCc
Q 045902 1065 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPLGR 1110 (1472)
Q Consensus 1065 l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~~~ 1110 (1472)
|++++ +.|.|||+++||++ .+...+|++++|++ .|+++..|++.+
T Consensus 514 l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 514 IRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 99997 45999999999976 46778999999973 266777888754
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7e-56 Score=554.47 Aligned_cols=188 Identities=26% Similarity=0.331 Sum_probs=156.1
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+ ...+||++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 68999999999999999999999999999999998763 4788875 23589999998877889999988
Q ss_pred HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 985 ~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
.............++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 369 SKIDASKLNSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp HHHHHHHHTCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 6531111122345677778888776665553 47999999999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCCCc
Q 045902 1065 VRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPLGR 1110 (1472)
Q Consensus 1065 l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~~~ 1110 (1472)
|+++++ .|.|||++|||++ ++...||++++|++ .|+++..|++.+
T Consensus 444 l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 444 IRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999974 5999999999976 46778999999974 267777888754
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-54 Score=538.03 Aligned_cols=201 Identities=23% Similarity=0.266 Sum_probs=162.0
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.++|. .++|++|+.......||.|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 57778999999999999999999999999999998774 5899987653 479999987777789999999
Q ss_pred HHHHHcCC-CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHH
Q 045902 985 LYSAWLRL-PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063 (1472)
Q Consensus 985 ~~~~~l~~-~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~ 1063 (1472)
.+...... .....++++++.+++.+..++.+ ..|||||||||+|||||+.+|+||+|||||+|||+.++..+++
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp HHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHhhhhccchhHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 87422111 22345678888888887777654 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecC-cEEEEEcCCCcchhHHHHHHHhC
Q 045902 1064 TVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GHVIYAGPLGRQSHKLVEYFEAV 1122 (1472)
Q Consensus 1064 ~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~g-g~v~~~g~~~~~~~~~~~~f~~~ 1122 (1472)
.|+++++ .|.|||++|||++ ++...||++++|+++ |.....++..........++..+
T Consensus 427 ~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999975 5899999999976 467789999999742 34455555433333444555443
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.2e-53 Score=548.40 Aligned_cols=184 Identities=21% Similarity=0.280 Sum_probs=148.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCC-CCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHD-LHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 264 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12468999874 67889999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccccccCccCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVGNEMRR 343 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~~ 343 (1472)
.|++.+ ...+. . ..++.+++.+||+ +..+..+++
T Consensus 514 ~e~l~~--~~~~~------------~---------------------------~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVGT------------K---------------------------EAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSSC------------H---------------------------HHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcCH------------H---------------------------HHHHHHHHHcCCChhhhcCCccc----
Confidence 999965 11100 0 0134578899995 567777765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ .|.|+|++.|+ ..++.+++|+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECC-HHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999987 47888887654 567788999999999999
Q ss_pred EE-EecChhHHH
Q 045902 424 IV-YQGPREYVL 434 (1472)
Q Consensus 424 iv-~~G~~~~~~ 434 (1472)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789887653
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-53 Score=550.23 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=138.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCCC----ceeEEEEcCee
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLL---------------------QALSGKSDKSLR----VSGRVTYCGHE 239 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~I~~~G~~ 239 (1472)
++++|+|||+.|++||+++|+||||||||||+ +++.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 777777666521 24677787766
Q ss_pred CCCCCCCceEEEEcCCCCC-------------------CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCCh
Q 045902 240 LTEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300 (1472)
Q Consensus 240 ~~~~~~~~~~~yv~Q~d~~-------------------~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1472)
.... +++.++|++|...+ ++.+||+||+.+....... ..+.... ..
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~~---~~ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQIA---RL 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHHH---HH
Confidence 5432 23445555554332 4578999999874221100 0000000 00
Q ss_pred hHHHHHHHHHhccccccccHHHHHHHhCCccc-ccccccCccCCCCChHHHHHHHHHHHHhCCCc--EeEEeCCCCCCCH
Q 045902 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDIC-ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK--ALFMDEISTGLDS 377 (1472)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~--illLDEptsgLDs 377 (1472)
..++. ...-.+++.+||++. .|+.+++ |||||||||+|||||+.+|+ +|+|||||+|||+
T Consensus 175 ~~~~~------------~~~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 ILREI------------RDRLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ----C------------HHHHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred HHHHH------------HHHHHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000 001125888999864 5777665 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHH
Q 045902 378 STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYV 433 (1472)
Q Consensus 378 ~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~ 433 (1472)
.++.++++.|+++++ .|.|+|++.|+.. ....+|+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCHH--HHhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999975 5889998887653 34569999999 89999999998765
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-52 Score=528.68 Aligned_cols=201 Identities=18% Similarity=0.187 Sum_probs=160.4
Q ss_pred eeeccceeEEeCC-----eEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 904 QLLQDVSGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 904 ~iL~~vs~~i~~G-----e~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.+++|+|+++++| |++||+||||||||||+++|+|..++ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 78999999999999999999998774 35641 11 23579999997776678
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
||+|++..............+++++.+++.+..++.+ ..|||||||||+|||+|+.+|+||+|||||+|||+.++
T Consensus 429 tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 503 (608)
T 3j16_B 429 TVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQR 503 (608)
T ss_dssp BHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHH
T ss_pred cHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHH
Confidence 9999875432212223456788999999988877664 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCCCcchhHHHHHHHhC
Q 045902 1059 AIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPLGRQSHKLVEYFEAV 1122 (1472)
Q Consensus 1059 ~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~~~~~~~~~~~f~~~ 1122 (1472)
..++++|++++ +.|.|||++|||++ ++...+||+++|++ .|+++..|++.+.-.....+...+
T Consensus 504 ~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 504 IICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 99999999986 45999999999976 47778999999974 278888888754333322343433
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-40 Score=428.25 Aligned_cols=198 Identities=26% Similarity=0.415 Sum_probs=145.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHH---------hhhcCCCC-CC---eeE------EEEEEcCccCChhc----
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT-GG---YIE------GSISISGYPKKQET---- 960 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl---------~~L~g~~~-~~---~~~------G~i~i~G~~~~~~~---- 960 (1472)
..|+|||++|++|+++||+||||||||||+ +.+.+... .+ ... +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 33433211 11 122 34556554431100
Q ss_pred ----------------------------------------ccceeEEeccCCCCCC------------------------
Q 045902 961 ----------------------------------------FARISGYCEQNDIHSP------------------------ 976 (1472)
Q Consensus 961 ----------------------------------------~~~~~gyv~Q~~~~~~------------------------ 976 (1472)
..+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012367776665544
Q ss_pred --------CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC---CCcc
Q 045902 977 --------NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP---SIIF 1045 (1472)
Q Consensus 977 --------~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p---~il~ 1045 (1472)
.+||.|++.|... .+......++++.+||... ..+.+ ...|||||||||+||+||+.+| +||+
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--~~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~p~~p~LLI 831 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--IPSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKRDTGRTLYI 831 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--CHHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSCCCSSEEEE
T ss_pred cCCHHHHhhCCHHHHHHHHhc--chhHHHHHHHHHHcCCchh---hccCC-ccCCCHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 3688888877432 1222445667777777543 22332 3579999999999999999876 6999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCCC
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPLG 1109 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~~ 1109 (1472)
|||||+|||+.+...+++.|++++++|.|||+++|+++ +...+|++++|. +||++++.|+..
T Consensus 832 LDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 832 LDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 99999999999999999999999988999999999964 567799999993 479999999863
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.9e-40 Score=386.28 Aligned_cols=207 Identities=25% Similarity=0.331 Sum_probs=180.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLH 258 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 258 (1472)
.+++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 457999999999999999999999999999999999999998 9999999999876543 3579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.|+.+..+... .+ . ...++.+++.+||++.+|..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------~~----------~--------------~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------DE----------V--------------KRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------HH----------H--------------HHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HH----------H--------------HHHHHHHHHHcCCchHhcCChh
Confidence 999999999999765433210 00 0 0124668999999988887765
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+..|.|+|++.|+ ..++.++||+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEE
Confidence 4 999999999999999999999999999999999999999999999987778999988765 4578889999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998874
No 11
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.7e-39 Score=417.29 Aligned_cols=195 Identities=28% Similarity=0.402 Sum_probs=147.9
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhc-C----C-----CCCC---eeEE------EEEEcCccCChhc-----
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA-G----R-----KTGG---YIEG------SISISGYPKKQET----- 960 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g----~-----~~~~---~~~G------~i~i~G~~~~~~~----- 960 (1472)
.|+|||++|++||++||+|+||||||||+++|+ | . ..++ .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999964 2 1 1122 2344 5889987752100
Q ss_pred -----------------ccceeEEeccCCCCC----------------------C-------------------------
Q 045902 961 -----------------FARISGYCEQNDIHS----------------------P------------------------- 976 (1472)
Q Consensus 961 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 976 (1472)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 023457887753221 1
Q ss_pred -------CCCHHHHHHHHHHcCCCchHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC---CCcc
Q 045902 977 -------NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTIAVELVANP---SIIF 1045 (1472)
Q Consensus 977 -------~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p---~il~ 1045 (1472)
.+|+.|++.|... .+......++++.++|.. ..+.. +..|||||||||+||++|+.+| +||+
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~--~~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLI 871 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS--IPKIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYI 871 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS--CHHHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred CCHHHhhhcCHHHHHHHHhc--chhHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4678888876322 122233467788888765 33433 3579999999999999999875 9999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPL 1108 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~ 1108 (1472)
|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 872 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 99999999999999999999999988999999999965 457899999994 46889988875
No 12
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5e-40 Score=386.84 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=182.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+... .+...+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 47888888766321 1235799999999999999999999999999999999998874 599999999986
Q ss_pred Ch---h---cccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 957 KQ---E---TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~---~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
.. . ..++.+||++|++.+++.+||+||+.|....+. +.+ +.++++++.++|.+..++.. ..||||
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 167 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGG 167 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHH
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHH
Confidence 43 1 235679999999999999999999999876543 222 45778888888887766653 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+.+|++|+|||||||||+.++..++++|+++.++ |.|||++||+++ .+.+.||++++|++ |++++.
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~ 245 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQ 245 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999754 999999999976 46778999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 246 g~~~ 249 (366)
T 3tui_C 246 DTVS 249 (366)
T ss_dssp CBHH
T ss_pred cCHH
Confidence 9863
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-39 Score=369.39 Aligned_cols=209 Identities=26% Similarity=0.376 Sum_probs=177.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 25 l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESS
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 6788887664 235799999999999999999999999999999999998874 5899999998763
Q ss_pred --h---hcccceeEEeccCCCCCCCCCHHHHHHHHH-HcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHH
Q 045902 958 --Q---ETFARISGYCEQNDIHSPNVTIYESLLYSA-WLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 958 --~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
. ..+++.+||++|++.+++.+||+||+.+.. ... .+. .+.++++++.+++.+..++.. ..|||||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 164 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQ 164 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 1 224567999999999999999999999864 332 222 235678888898887766653 4799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 242 (263)
T 2olj_A 165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGK 242 (263)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999975 46678999999985 78988887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 243 ~ 243 (263)
T 2olj_A 243 P 243 (263)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.9e-39 Score=364.67 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=172.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++.. .....+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 4567777665311 1124699999999999999999999999999999999998874 5999999998764
Q ss_pred hh---c----ccceeEEeccCCCCCCCCCHHHHHHHHHHcC----CCch---HHHHHHHHHcccccc-cccccCCCCCCC
Q 045902 958 QE---T----FARISGYCEQNDIHSPNVTIYESLLYSAWLR----LPKD---MFVEEVMELVEMKAL-RNSLVGLPGVDG 1022 (1472)
Q Consensus 958 ~~---~----~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~----~~~~---~~~~~v~~~l~l~~~-~~~~~~~~~~~~ 1022 (1472)
.. . .++.+||++|++.+++.+||+||+.+....+ .+.+ +.+.++++.+++.+. .+.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 21 1 1345999999999999999999999876543 1222 234556666666543 2333 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999985 78
Q ss_pred EEEEcCCC
Q 045902 1102 VIYAGPLG 1109 (1472)
Q Consensus 1102 v~~~g~~~ 1109 (1472)
++..++..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 98888764
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-39 Score=373.25 Aligned_cols=212 Identities=25% Similarity=0.395 Sum_probs=179.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. ++..+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 477888877652 124599999999999999999999999999999999998874 599999999987
Q ss_pred C--h---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 957 K--Q---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~--~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. . ..+++.+||++|++. .+..+||+||+.|...... +.+ +.++++++.+++.++.+... ..||||
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG 147 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFG 147 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHH
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHH
Confidence 3 2 234577999999863 4457999999999876542 222 45778899999988777654 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~ 225 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQ 225 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999997 56999999999987 36678999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 226 g~~~ 229 (275)
T 3gfo_A 226 GNPK 229 (275)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9864
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-39 Score=384.40 Aligned_cols=210 Identities=25% Similarity=0.361 Sum_probs=182.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ ++..+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECC
Confidence 5667776654 346799999999999999999999999999999999999874 5999999999864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...++.+|||+|+..++|.+||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||||||||+
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVa 143 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVA 143 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHH
Confidence 3 2335679999999999999999999999876653 222 45778899999988777654 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+..+..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+..
T Consensus 144 iArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999999999999999999999765 999999999976 57889999999985 7999999863
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-39 Score=369.75 Aligned_cols=209 Identities=22% Similarity=0.283 Sum_probs=177.5
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 6777877654 235799999999999999999999999999999999998874 5899999998764
Q ss_pred h----------------hcccceeEEeccCCCCCCCCCHHHHHHHHH-HcC-CCc---hHHHHHHHHHcccccc-ccccc
Q 045902 958 Q----------------ETFARISGYCEQNDIHSPNVTIYESLLYSA-WLR-LPK---DMFVEEVMELVEMKAL-RNSLV 1015 (1472)
Q Consensus 958 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~l~-~~~---~~~~~~v~~~l~l~~~-~~~~~ 1015 (1472)
. ..+++.+||++|++.+++.+||+||+.+.. ..+ .+. ...++++++.+++.+. .++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 151 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP 151 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc
Confidence 1 123567999999999999999999999864 332 222 2356788888988877 66553
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE
Q 045902 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1016 ~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++
T Consensus 152 -----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (262)
T 1b0u_A 152 -----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIF 225 (262)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEE
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999976 46678999999
Q ss_pred EecCcEEEEEcCC
Q 045902 1096 MKRGGHVIYAGPL 1108 (1472)
Q Consensus 1096 l~~gg~v~~~g~~ 1108 (1472)
|++ |+++..|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 226 LHQ-GKIEEEGDP 237 (262)
T ss_dssp EET-TEEEEEECH
T ss_pred EEC-CEEEEeCCH
Confidence 985 789888875
No 18
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-39 Score=383.57 Aligned_cols=210 Identities=27% Similarity=0.426 Sum_probs=180.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC-
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK- 956 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~- 956 (1472)
+.++|+++.+ ++..+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 5 l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 5 LHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIF 69 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 5677776654 346799999999999999999999999999999999998874 599999999875
Q ss_pred ---Ch-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 957 ---KQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ---~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. ...++.+|||+|+..++|.+||+||+.|....+. +.+ +.++++++.++|.++.++.. ..||||||
T Consensus 70 ~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 144 (359)
T 3fvq_A 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQ 144 (359)
T ss_dssp SSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHH
T ss_pred ccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHH
Confidence 21 2345779999999999999999999999765432 222 45788899999988877664 47999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
|||+|||||+.+|++|+|||||||||+..+..+++.|+++. +.|.|||++|||.+ ++...+||+++|++ |+++..|+
T Consensus 145 QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 222 (359)
T 3fvq_A 145 QRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTAS 222 (359)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeC
Confidence 99999999999999999999999999999999999888775 56999999999976 57789999999985 79999998
Q ss_pred CC
Q 045902 1108 LG 1109 (1472)
Q Consensus 1108 ~~ 1109 (1472)
+.
T Consensus 223 ~~ 224 (359)
T 3fvq_A 223 PH 224 (359)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 19
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.2e-39 Score=360.36 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=175.6
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~y-------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVI-------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEeEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6677777654 235799999999999999999999999999999999998874 5899999998864
Q ss_pred hh------ccc-ceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 QE------TFA-RISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~~------~~~-~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
.. .++ +.+||++|++.+++.+||+||+.+....+. +. .+.++++++.+++.+..+... ..||||
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 144 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGG 144 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHH
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHH
Confidence 21 122 569999999999999999999998765432 21 235678888888887766654 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ..+.||++++|++ |++++.|
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i~~~g 221 (224)
T 2pcj_A 145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKVVGEI 221 (224)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEe
Confidence 999999999999999999999999999999999999999999877999999999965 3488999999985 7898887
Q ss_pred C
Q 045902 1107 P 1107 (1472)
Q Consensus 1107 ~ 1107 (1472)
+
T Consensus 222 ~ 222 (224)
T 2pcj_A 222 T 222 (224)
T ss_dssp E
T ss_pred e
Confidence 5
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.1e-39 Score=361.22 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=172.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-------ceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-------RTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999998 99999999998765432 359999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc-ccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC-ADIMV 337 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~v 337 (1472)
++.+||+||+.++......+.. .+.+. ...+..+++.+||.+. .|..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SGEER------------------------RKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CHHHH------------------------HHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CHHHH------------------------HHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999987543211000 00000 0113457889999875 36665
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
+ .|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++++..|.|+|++.|++. ..+++|+|+
T Consensus 144 ~-----~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 N-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 5 499999999999999999999999999999999999999999999998766899999988764 458999999
Q ss_pred EecCCeEEEecChhHH
Q 045902 418 LLSEGEIVYQGPREYV 433 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~ 433 (1472)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-39 Score=365.99 Aligned_cols=209 Identities=22% Similarity=0.331 Sum_probs=178.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 16 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 16 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 80 (256)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6677777654 235799999999999999999999999999999999998774 5899999998864
Q ss_pred h--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 958 Q--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 958 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
. ...++.+||++|++.+++.+||+||+.+..... .+.+ +.++++++.+++.+..++.+ ..|||||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv 155 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKL 155 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHH
Confidence 3 234567999999999999999999999865432 2222 35678889999988777654 47999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999999999999999877999999999975 35567999999985 788888875
No 22
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=7.1e-39 Score=412.95 Aligned_cols=195 Identities=25% Similarity=0.361 Sum_probs=142.8
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhh-hcCCC-------CC----------------CeeEE-------EEEEcC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDV-LAGRK-------TG----------------GYIEG-------SISISG 953 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~G 953 (1472)
.|+|||++|++||++||+|+||||||||++. |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999997 76421 11 12467 789999
Q ss_pred ccCChhc-------------c---------cceeEEeccC----------------------CCCCC-------------
Q 045902 954 YPKKQET-------------F---------ARISGYCEQN----------------------DIHSP------------- 976 (1472)
Q Consensus 954 ~~~~~~~-------------~---------~~~~gyv~Q~----------------------~~~~~------------- 976 (1472)
.++.... . .|..||.++. ..+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 8753110 0 1112332221 11111
Q ss_pred -------------------CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-cccccCCCCCCCCCHHHHHHHHHHHH
Q 045902 977 -------------------NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVE 1036 (1472)
Q Consensus 977 -------------------~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~a 1036 (1472)
.+|+.|++.|... .+....+.++++.+++... .++. +..|||||||||.||++
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~--~~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAra 744 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD--ESAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATE 744 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT--SHHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHT
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhc--chHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHH
Confidence 2455555544211 1112346677888887653 2332 35799999999999999
Q ss_pred HhhC---CCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 045902 1037 LVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPL 1108 (1472)
Q Consensus 1037 L~~~---p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~ 1108 (1472)
|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 745 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 745 LRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9996 6999999999999999999999999999988999999999965 448899999994 46889998875
No 23
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.1e-39 Score=378.43 Aligned_cols=207 Identities=22% Similarity=0.332 Sum_probs=178.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC----CCCCC-CceEEEEcCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL----TEFVP-QRTCAYISQHDLHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~----~~~~~-~~~~~yv~Q~d~~~~ 260 (1472)
+++|+|||+.+++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999988 33222 367999999999999
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.+||+||+.|+.+..+... .+. ...++.+++.+||++.+|..+++
T Consensus 94 ~ltV~eni~~~l~~~~~~~--------------------~~~--------------~~~v~~~l~~~gL~~~~~r~~~~- 138 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT--------------------AQE--------------RQRIEAMLELTGISELAGRYPHE- 138 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS--------------------HHH--------------HHHHHHHHHHHTCGGGTTSCGGG-
T ss_pred CCCHHHHHHHHHHHcCCCh--------------------HHH--------------HHHHHHHHHHcCCchHhcCChhh-
Confidence 9999999999865433211 000 01246689999999988877765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..|.|+|++.|+ ..++..++|+|++|+
T Consensus 139 ----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd-~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 139 ----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVMK 213 (359)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC-HHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHCCEEEEEE
Confidence 999999999999999999999999999999999999999999988877678898887664 568889999999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999988743
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.9e-39 Score=368.26 Aligned_cols=211 Identities=23% Similarity=0.313 Sum_probs=179.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++++|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 46788887664 235799999999999999999999999999999999998874 589999999886
Q ss_pred Ch----hcccceeEEeccCCCCCCCCCHHHHHHHHHHc-C-------------CCch---HHHHHHHHHccccccccccc
Q 045902 957 KQ----ETFARISGYCEQNDIHSPNVTIYESLLYSAWL-R-------------LPKD---MFVEEVMELVEMKALRNSLV 1015 (1472)
Q Consensus 957 ~~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l-~-------------~~~~---~~~~~v~~~l~l~~~~~~~~ 1015 (1472)
.. ...++.+||++|++.+++.+||+||+.+.... + .+.. ..++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 43 12345699999999989999999999886533 1 1221 35678889999887777654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE
Q 045902 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1016 ~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999987 46678999999
Q ss_pred EecCcEEEEEcCCC
Q 045902 1096 MKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1096 l~~gg~v~~~g~~~ 1109 (1472)
|++ |++++.|+..
T Consensus 226 l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MFN-GQIIAEGRGE 238 (257)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEeCHH
Confidence 985 7888888763
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-39 Score=362.12 Aligned_cols=210 Identities=21% Similarity=0.354 Sum_probs=175.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 36778887654 235799999999999999999999999999999999998774 589999999886
Q ss_pred Ch---hc-ccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch---HHHHHHHHHcc-cccccccccCCCCCCCCCHHHH
Q 045902 957 KQ---ET-FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD---MFVEEVMELVE-MKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ~~---~~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~---~~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. .. .++.+||++|++.+++.+||+||+.+......+.+ +.++++++.++ +.+..++.. ..||||||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~ 145 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQ 145 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHH
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHH
Confidence 43 11 23459999999999999999999988642222222 34667788884 877666543 47999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 146 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 223 (240)
T 1ji0_A 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999999999999999999999877999999999975 46788999999985 788888875
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.3e-39 Score=367.87 Aligned_cols=211 Identities=25% Similarity=0.339 Sum_probs=181.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 46778887765 346799999999999999999999999999999999998774 489999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
.. ...++.++|++|++.+++.+||+||+.+....... ..+.++++++.+++.++.++.. ..|||||||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv 150 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRV 150 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHH
Confidence 43 33456789999999988899999999987544321 2356788999999988877664 47999999999
Q ss_pred HHHHHHhh------CCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1032 TIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1032 ~iA~aL~~------~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
+|||||+. +|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~ 228 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVA 228 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999 99999999999999999999999999999765 579999999976 46678999999985 79999
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|+..
T Consensus 229 ~g~~~ 233 (266)
T 4g1u_C 229 CGTPE 233 (266)
T ss_dssp EECHH
T ss_pred EcCHH
Confidence 99864
No 27
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.2e-39 Score=379.48 Aligned_cols=207 Identities=23% Similarity=0.347 Sum_probs=181.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
..+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999987655 3679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+ . ...++.+++.+||++..|..+.+
T Consensus 93 ~eni~~~~~~~~~~----------~~~----------~--------------~~~v~~~l~~~~L~~~~~r~p~~----- 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAK----------KEV----------I--------------NQRVNQVAEVLQLAHLLDRKPKA----- 133 (381)
T ss_dssp HHHHTHHHHHTTCC----------HHH----------H--------------HHHHHHHHHHTTCGGGTTCCGGG-----
T ss_pred HHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCchhhcCChhH-----
Confidence 99999986543321 000 0 01246689999999988877765
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.+..|.|+|++.| ...++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998767889888765 45688899999999999999
Q ss_pred EEecChhHHHH
Q 045902 425 VYQGPREYVLD 435 (1472)
Q Consensus 425 v~~G~~~~~~~ 435 (1472)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998743
No 28
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.3e-38 Score=362.71 Aligned_cols=206 Identities=26% Similarity=0.339 Sum_probs=173.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCC-CCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHD-LHHG 260 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d-~~~~ 260 (1472)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999997 999999999984211 135799999996 3455
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.+||+||+.|+....+... .+ . ...++.+++.+||++..|..+++
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~L~~~~~~~~~~- 143 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------DE----------I--------------RKRVDNALKRTGIEHLKDKPTHC- 143 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------HH----------H--------------HHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred cCcHHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHcCCchhhcCCccc-
Confidence 7999999999765432110 00 0 01245688999999988877765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..|.|+|++.|+. .++.+++|+|++|+
T Consensus 144 ----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 144 ----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMK 218 (275)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999733488999888765 47778999999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999988753
No 29
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.7e-38 Score=361.28 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=176.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999997 8999999999876543 25699999999998899
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++....... +. ...++.+++.+||.+..|..+++
T Consensus 101 tv~e~l~~~~~~~~~~----------------------~~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 141 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGS----------------------QD--------------RQALQQVMAQTDCLALAQRDYRV--- 141 (266)
T ss_dssp BHHHHHHGGGTTSCST----------------------TH--------------HHHHHHHHHHTTCSTTTTSBGGG---
T ss_pred CHHHHHHhhhhhcCcH----------------------HH--------------HHHHHHHHHHcCChhHhcCCccc---
Confidence 9999999875422100 00 01235678999999888877764
Q ss_pred CCCChHHHHHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 343 RGISGGQKKRVTTGEMLVG------PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
|||||||||+|||||+. +|++|+|||||+|||+.++.++++.|+++++..+.|+|++.|+ ..++.+++|+|
T Consensus 142 --LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-l~~~~~~~d~v 218 (266)
T 4g1u_C 142 --LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-LNLAALYADRI 218 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-HHHHHHHCSEE
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-HHHHHHhCCEE
Confidence 99999999999999999 9999999999999999999999999999987666788887654 55778899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998863
No 30
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.8e-39 Score=376.78 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=181.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ +++.+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 467777765431 235699999999999999999999999999999999999874 599999999886
Q ss_pred Ch-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 957 KQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 957 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
.. ...++.+|||+|+..++|.+||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRv 154 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRV 154 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHH
Confidence 43 2345779999999999999999999999866542 322 45778899999988877654 47999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 231 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTPE 231 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999999999999765 999999999976 57788999999985 7899988763
No 31
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-38 Score=376.22 Aligned_cols=210 Identities=24% Similarity=0.354 Sum_probs=179.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 5667776554 345799999999999999999999999999999999998874 5899999998864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC-c---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP-K---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...++.+|||+|+..+++++||+||+.|....+.. . ++.++++++.+++.++.++.. ..|||||||||+
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRva 143 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVA 143 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHH
Confidence 3 22356799999999999999999999987654321 1 246788999999988877654 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999999755 999999999975 57788999999985 7899988763
No 32
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.2e-37 Score=401.86 Aligned_cols=195 Identities=25% Similarity=0.361 Sum_probs=145.3
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhc-C----CC-----CCC---eeEE------EEEEcCccCChh------
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA-G----RK-----TGG---YIEG------SISISGYPKKQE------ 959 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g----~~-----~~~---~~~G------~i~i~G~~~~~~------ 959 (1472)
+|+|||++|++|+++||+|+||||||||+++|+ | .. .++ ...| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999963 2 11 122 1223 466777664210
Q ss_pred ----------------cccceeEEeccCCCCC----------------------C-------------------------
Q 045902 960 ----------------TFARISGYCEQNDIHS----------------------P------------------------- 976 (1472)
Q Consensus 960 ----------------~~~~~~gyv~Q~~~~~----------------------~------------------------- 976 (1472)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0123457777743221 1
Q ss_pred -------CCCHHHHHHHHHHcCCCchHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC---CCcc
Q 045902 977 -------NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTIAVELVANP---SIIF 1045 (1472)
Q Consensus 977 -------~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p---~il~ 1045 (1472)
.+||.|++.|... .+......++++.++|.. ..+.. +..|||||||||+||++|+.+| +||+
T Consensus 817 ~si~dvl~ltv~e~l~~~~~--~~~~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLI 889 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP--IAGVHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRSTGRTVYI 889 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT--CHHHHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCCSSEEEE
T ss_pred CCHHHHhhccHHHHHHHhhc--chHHHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 3577788776432 122233456788888765 33333 3579999999999999999875 9999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPL 1108 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~ 1108 (1472)
|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 890 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 890 LDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 99999999999999999999999888999999999965 457899999995 46899999875
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-38 Score=376.10 Aligned_cols=210 Identities=26% Similarity=0.393 Sum_probs=179.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5566766543 345799999999999999999999999999999999998874 5899999998864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...++.+|||+|+..++|++||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||||||||+
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRva 143 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVA 143 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHH
Confidence 3 2234679999999999999999999999865542 322 45778899999988777654 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp HHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999999999999755 999999999975 57788999999985 7899888753
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.6e-38 Score=376.41 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=180.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 5667776554 23579999999999999999999999999999999999987 45999999998753
Q ss_pred h-------hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 Q-------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~-------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. ...++.+|||+|+..++|++||+||+.|....+. +.+ +.++++++.+++.++.++.. ..||||
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGG 143 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----RELSGG 143 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHH
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHH
Confidence 2 1235679999999999999999999999876542 322 45778899999988777654 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..
T Consensus 144 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~ 221 (372)
T 1g29_1 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQV 221 (372)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 999999999976 57788999999985 789998
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 222 g~~~ 225 (372)
T 1g29_1 222 GSPD 225 (372)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8763
No 35
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-38 Score=372.56 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=179.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+ ....++.+++.+||++..|..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KDE------------------------VEKRVVEIARKLLIDNLLDRKPTQ----- 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HHH------------------------TTHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCchHhcCChhh-----
Confidence 99999976543210 000 011246689999999988877765
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898888765 4578889999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (359)
T 2yyz_A 213 VQYGTPDEVY 222 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 36
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.4e-38 Score=352.09 Aligned_cols=200 Identities=25% Similarity=0.321 Sum_probs=171.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999999876432 1469999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.++....+.. +.+. ...++.+++.+||++..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------KKEA------------------------KERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------HHHH------------------------HHHHHHHHHHcCCchhhhCChh
Confidence 99999999999865432210 0000 0123567899999988887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|++. .+ +++|++++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE-LA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HH-HhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999999775 889999887743 44 89999999
Q ss_pred ecCCeEEEecCh
Q 045902 419 LSEGEIVYQGPR 430 (1472)
Q Consensus 419 L~~G~iv~~G~~ 430 (1472)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999874
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.3e-38 Score=371.90 Aligned_cols=206 Identities=27% Similarity=0.396 Sum_probs=178.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+. ...++.+++.+||++.+|..+++
T Consensus 105 ~eni~~~l~~~~~~----------~~~~------------------------~~~v~~~l~~~gL~~~~~r~~~~----- 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------KDEM------------------------DARVRELLRFMRLESYANRFPHE----- 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHHcCCC----------HHHH------------------------HHHHHHHHHHcCChhHhcCCccc-----
Confidence 99999976543211 0000 01246689999999988877764
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898887765 5678899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.5e-38 Score=372.19 Aligned_cols=206 Identities=27% Similarity=0.390 Sum_probs=179.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 3679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+ . ...++.+++.+||++..|..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~~----------~--------------~~~v~~~l~~~~L~~~~~r~~~~----- 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------REE----------I--------------DKKVREVAKMLHIDKLLNRYPWQ----- 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------HHH----------H--------------HHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HHH----------H--------------HHHHHHHHHHcCCchHhhCChhh-----
Confidence 99999976543211 000 0 01246689999999988877764
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898888765 4578899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.7e-38 Score=374.35 Aligned_cols=198 Identities=22% Similarity=0.303 Sum_probs=173.6
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
++ +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..+++.+||
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCH
Confidence 35 99999999999999999999999999999999999874 59999999988643 2335679999999999999999
Q ss_pred HHHHHHHHHcC-CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 981 YESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 981 ~e~l~~~~~l~-~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
+||+.|....+ .+.+..++++++.+++.++.++.. ..|||||||||+|||||+.+|++|+|||||||||+.++.
T Consensus 90 ~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~ 164 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 99999976543 233367888999999988877664 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1060 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1060 ~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
.+++.|+++.+ .|.|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 165 ~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 165 NAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999975 4999999999975 57788999999985 7888888753
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-38 Score=376.30 Aligned_cols=210 Identities=27% Similarity=0.394 Sum_probs=179.3
Q ss_pred EEEeceeeEEeccchhhccccccccce--eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQ--LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
+.++|+++.+ +++. +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y-------------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVF-------------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEE-------------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 5667776554 2345 99999999999999999999999999999999998874 58999999987
Q ss_pred CCh------hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 956 KKQ------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
... ...++.+|||+|+..+++.+||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSG 143 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSG 143 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCH
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCH
Confidence 532 2345779999999999999999999998765432 222 45778899999988877654 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++.
T Consensus 144 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~ 221 (353)
T 1oxx_K 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQ 221 (353)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999754 999999999976 57788999999985 78998
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|+..
T Consensus 222 ~g~~~ 226 (353)
T 1oxx_K 222 VGKPE 226 (353)
T ss_dssp EECHH
T ss_pred EcCHH
Confidence 88763
No 41
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.6e-38 Score=356.42 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=173.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCC--CCC---CCceEEEEcCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT--EFV---PQRTCAYISQHDLHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 260 (1472)
+++|+|||+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 36999999999999999999999999999999999999987 999999999885 111 1346999999999999
Q ss_pred CCCHHHHHHHhh-hccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 261 EMTVRETLDFSG-RCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 261 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
.+||+||+.|+. +..+.. +.+. ...++.+++.+||++..|..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------REKA------------------------EAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------HHHH------------------------HHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCC----------HHHH------------------------HHHHHHHHHHCCCchHhcCChhh
Confidence 999999999853 222110 0000 01235678999999888877765
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|+ ..++.+++|+|++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 8898888765 45677899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998874
No 42
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.4e-38 Score=375.77 Aligned_cols=210 Identities=24% Similarity=0.382 Sum_probs=173.5
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|++..
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 6777877654 23579999999999999999999999999999999999887 45999999998864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...+|.+|||+|+..+++++||+||+.|....+ .+.+ ..++++++.+++.++.++.. ..|||||||||+
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRva 151 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVA 151 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHH
Confidence 3 223567999999999999999999999875443 2222 35778899999988777653 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 152 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 227 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 227 (372)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999999765 999999999975 57788999999985 7899888763
No 43
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5e-38 Score=370.27 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=176.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+|+|+|+.+++||+++|+||||||||||||+|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 899999999999999999999999999999999999998 9999999999876443 367999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.|+.+..+.. .. ..++.+++.+||++..|..+++ ||
T Consensus 92 nl~~~~~~~~~~--------------------~~-----------------~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIK--------------------DP-----------------KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCC--------------------CH-----------------HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCC--------------------HH-----------------HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 999975432110 00 1245688999999988877764 99
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987678898888765 457889999999999999999
Q ss_pred ecChhHHH
Q 045902 427 QGPREYVL 434 (1472)
Q Consensus 427 ~G~~~~~~ 434 (1472)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 44
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-38 Score=355.70 Aligned_cols=194 Identities=23% Similarity=0.357 Sum_probs=166.6
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
+|+|||+++++ |++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 99999999999999999999998774 58999999988643 2335678999999999999999999
Q ss_pred HHHHHHcCCC--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 984 LLYSAWLRLP--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 984 l~~~~~l~~~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
+.+....+.. ..+.++++++.+++.+..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++..+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~ 165 (240)
T 2onk_A 91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL 165 (240)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9886433211 1245678888888887766654 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1062 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1062 ~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 166 ~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 166 MEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999754 999999999975 46778999999985 789888874
No 45
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-38 Score=359.29 Aligned_cols=197 Identities=24% Similarity=0.385 Sum_probs=169.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCC-CCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND-IHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~-~~~~~lTv~ 981 (1472)
+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 4699999999999999999999999999999999998774 5899999998875434556799999995 566789999
Q ss_pred HHHHHHHHcCCC---chHHHHHHHHHcccc--cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 982 ESLLYSAWLRLP---KDMFVEEVMELVEMK--ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 982 e~l~~~~~l~~~---~~~~~~~v~~~l~l~--~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
||+.+......+ ..+.++++++.+++. +..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 172 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHH
Confidence 999986432111 135678899999987 7766654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|+.
T Consensus 173 ~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 173 GKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999877999999999987 35667999999985 788888864
No 46
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.9e-38 Score=371.78 Aligned_cols=206 Identities=26% Similarity=0.361 Sum_probs=178.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC------CCC-CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE------FVP-QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 258 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999998 9999999998754 333 4679999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+|.+||+||+.|+.+..+.. +.+. ...++.+++.+||++..|..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------~~~~------------------------~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------RQEI------------------------DQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCC----------HHHH------------------------HHHHHHHHHHCCCchHhcCCcc
Confidence 99999999999976543211 0000 0124568899999998887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++
T Consensus 139 ~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~v 212 (372)
T 1g29_1 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAV 212 (372)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEE
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEE
Confidence 5 999999999999999999999999999999999999999999999977668898888765 4578899999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998874
No 47
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-38 Score=358.21 Aligned_cols=205 Identities=24% Similarity=0.319 Sum_probs=173.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC----------CC------CCceE
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE----------FV------PQRTC 249 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----------~~------~~~~~ 249 (1472)
+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999987 9999999998851 11 13569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhh-hccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC
Q 045902 250 AYISQHDLHHGEMTVRETLDFSG-RCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG 328 (1472)
Q Consensus 250 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 328 (1472)
+||+|++.+++.+||+||+.|+. +..+.. +.+. ...++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KHDA------------------------RERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HHHH------------------------HHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------HHHH------------------------HHHHHHHHHHcC
Confidence 99999999999999999999853 222110 0000 012456789999
Q ss_pred Cccc-ccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 329 LDIC-ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 329 L~~~-~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
|++. ++..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|++.|+ ..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HH
Confidence 9988 8877765 9999999999999999999999999999999999999999999999764 8888888765 45
Q ss_pred hHHhccCeEEEecCCeEEEecChhHHH
Q 045902 408 ETYDLFDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 408 ~~~~~fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
++.+++|+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 777899999999999999999998774
No 48
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.2e-38 Score=371.72 Aligned_cols=206 Identities=23% Similarity=0.362 Sum_probs=172.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+. ...++.+++.+||++.+|..+++
T Consensus 101 ~eni~~~~~~~~~~----------~~~~------------------------~~~v~~~l~~~~L~~~~~r~~~~----- 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------KDEI------------------------DKRVRWAAELLQIEELLNRYPAQ----- 141 (372)
T ss_dssp HHHHHTTCC--CCC----------HHHH------------------------HHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHhcCCC----------HHHH------------------------HHHHHHHHHHcCChhHhcCChhh-----
Confidence 99999975433211 0000 01246689999999988877654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898888765 4578899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 49
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.9e-38 Score=363.74 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=167.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999998 9999999999987653 357999999998884 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+|||.|+..... ++++.+..+.+.+ ...++. ++...||.+| +.+
T Consensus 143 Tv~eNi~~~~~~~~----------------------~~~~~~~~~~~~l---------~~~i~~--lp~gl~t~~~-~~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----------------------NDEVEAAAQAAGI---------HDAIMA--FPEGYRTQVG-ERG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----------------------HHHHHHHHHHHTC---------HHHHHH--STTGGGCEES-TTS
T ss_pred cHHHHHHhhcccCC----------------------HHHHHHHHHHhCc---------HHHHHh--ccchhhhHhc-CCc
Confidence 99999998643111 0011111111111 111222 3345577777 566
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|+||+|||||+|||+.++..|.+.|+++.+ ++|+|++.|... .+ ..+|+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~-~~-~~aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLS-TV-VNADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHH-HH-HTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChH-HH-HcCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999864 678888776543 44 449999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
++++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 50
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-38 Score=365.92 Aligned_cols=215 Identities=23% Similarity=0.383 Sum_probs=175.7
Q ss_pred ccceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEc
Q 045902 873 FQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS 952 (1472)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~ 952 (1472)
..+..+.++|+++.+ +++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++
T Consensus 17 ~~~~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~ 81 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLF 81 (279)
T ss_dssp --CEEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred CCCceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEEC
Confidence 334468888887765 235799999999999999999999999999999999998874 58999999
Q ss_pred CccCC--h---hcccceeEEeccCCCCC--CCCCHHHHHHHHHHc-----CCCch---HHHHHHHHHcccccccccccCC
Q 045902 953 GYPKK--Q---ETFARISGYCEQNDIHS--PNVTIYESLLYSAWL-----RLPKD---MFVEEVMELVEMKALRNSLVGL 1017 (1472)
Q Consensus 953 G~~~~--~---~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l-----~~~~~---~~~~~v~~~l~l~~~~~~~~~~ 1017 (1472)
|.+.. . ..+++.+||++|++.+. +.+||+||+.+.... ..+.+ +.++++++.+++.+..++.+
T Consensus 82 g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 159 (279)
T 2ihy_A 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-- 159 (279)
T ss_dssp TBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG--
T ss_pred CEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh--
Confidence 98764 2 23456799999987543 457999999875311 11122 35677888888887776654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEE--EEEecCccHHHHHhhCeEEE
Q 045902 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1018 ~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tv--i~t~H~~~~~~~~~~D~v~~ 1095 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.||++++
T Consensus 160 ---~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~ 235 (279)
T 2ihy_A 160 ---GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILL 235 (279)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEE
Confidence 4799999999999999999999999999999999999999999999997669999 99999976 35678999999
Q ss_pred EecCcEEEEEcCCC
Q 045902 1096 MKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1096 l~~gg~v~~~g~~~ 1109 (1472)
|++ |++++.|+..
T Consensus 236 l~~-G~i~~~g~~~ 248 (279)
T 2ihy_A 236 LKD-GQSIQQGAVE 248 (279)
T ss_dssp EET-TEEEEEEEHH
T ss_pred EEC-CEEEEECCHH
Confidence 985 7898888753
No 51
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=8.6e-38 Score=356.13 Aligned_cols=215 Identities=27% Similarity=0.352 Sum_probs=174.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|||+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999987 9999999999865432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCC-CCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI-KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
+||+||+.++......+. ...... ... .+..+. ...++.+++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~- 153 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP-LNSLFY-------KKWIPKEEEM--------------VEKAFKILEFLKLSHLYDRKAGE- 153 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH-HHHHHH-------CSSCCCCHHH--------------HHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CcHHHHHHHHHhhhccCc-cccccc-------ccccCCHHHH--------------HHHHHHHHHHcCCchhhCCCchh-
Confidence 999999998643200000 000000 000 000000 01245688999999888877765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. |.|+|++.|+. .++.+++|+|++|+
T Consensus 154 ----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 154 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMF 227 (257)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999764 88998887765 46778999999999
Q ss_pred CCeEEEecChhH
Q 045902 421 EGEIVYQGPREY 432 (1472)
Q Consensus 421 ~G~iv~~G~~~~ 432 (1472)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999887
No 52
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=7.4e-38 Score=370.34 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=177.1
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC-----CCC-CceEEEEcCCCCCCCC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE-----FVP-QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~-~~~~~yv~Q~d~~~~~ 261 (1472)
+|+|+|+.+++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..+ ++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999998754 222 4679999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.|+.+..+... .+. ...++.+++.+||++..|..+++
T Consensus 97 ltv~eni~~~~~~~~~~~----------~~~------------------------~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------EEI------------------------RKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------HHH------------------------HHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCCH----------HHH------------------------HHHHHHHHHHcCCchHhcCChhh--
Confidence 999999999765432110 000 01245689999999988877764
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999977668898888765 4578899999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 53
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-37 Score=352.66 Aligned_cols=206 Identities=26% Similarity=0.305 Sum_probs=174.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999886421 1356999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|.....+.. ..+ . ...++.+++.+||++..++.+++
T Consensus 105 v~enl~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~~~---- 146 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------SSE----------I--------------EEMVERATEIAGLGEKIKDRVST---- 146 (256)
T ss_dssp HHHHHHHHHHHHCCC----------HHH----------H--------------HHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHHcCCC----------hHH----------H--------------HHHHHHHHHHCCCchHhcCChhh----
Confidence 999999864322110 000 0 00135678999999888877765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|++.|++ .++..++|++++|++|+
T Consensus 147 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 147 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGT 223 (256)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 488998887764 46778899999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
No 54
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-37 Score=349.50 Aligned_cols=204 Identities=21% Similarity=0.339 Sum_probs=171.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999999875432 2359999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC-CcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG-LDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~vg~~ 340 (1472)
+||+||+.++.... .. ..+.. ...+.+++.++ |++..++.++
T Consensus 96 ltv~enl~~~~~~~-~~--------------------~~~~~--------------~~~~~~l~~~~~l~~~~~~~~~-- 138 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD--------------------KEGIK--------------RDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTC-CC--------------------SSHHH--------------HHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CcHHHHHHHhhhcC-CC--------------------HHHHH--------------HHHHHHHHHcccHhhHhcCChh--
Confidence 99999998863111 00 00000 01345678884 8777776655
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++.|++ .++.+++|++++|+
T Consensus 139 ---~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999976 588888887764 46778999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
No 55
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.2e-38 Score=353.16 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=169.0
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
.+|+|||++|++||+++|+||||||||||+++|+|..+ +. |+|.++|.+... ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 48999999999999999999999999999999999887 45 999999987532 3345679999999998899999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC-------CccccCCCCCC
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS-------IIFMDEPTSGL 1053 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~-------il~LDEPTsgL 1053 (1472)
+||+.+...... ....++++++.+++.+..++.. ..|||||||||+|||||+.+|+ +|+|||||+||
T Consensus 91 ~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L 164 (249)
T 2qi9_C 91 WHYLTLHQHDKT-RTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164 (249)
T ss_dssp HHHHHTTCSSTT-CHHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred HHHHHHhhccCC-cHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence 999987532111 2556788999999988777653 4799999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |+++..|+..
T Consensus 165 D~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 165 DVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999877999999999975 45678999999985 7888888753
No 56
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.8e-38 Score=354.23 Aligned_cols=210 Identities=25% Similarity=0.280 Sum_probs=168.4
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC--CCCCeeEEEEEEcCcc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGYIEGSISISGYP 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~--~~~~~~~G~i~i~G~~ 955 (1472)
+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|. .+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 5677777654 235799999999999999999999999999999999997 43 569999999988
Q ss_pred CCh---hcc-cceeEEeccCCCCCCCCCHHHHHHHHHHc--C--CCc---hHHHHHHHHHccc-ccccccccCCCCCCC-
Q 045902 956 KKQ---ETF-ARISGYCEQNDIHSPNVTIYESLLYSAWL--R--LPK---DMFVEEVMELVEM-KALRNSLVGLPGVDG- 1022 (1472)
Q Consensus 956 ~~~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l--~--~~~---~~~~~~v~~~l~l-~~~~~~~~~~~~~~~- 1022 (1472)
... ... ++.++|++|++.+++.+||+|++.+.... . .+. ...++++++.+++ .++.++.+ ..
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccC
Confidence 643 122 33489999999999999999999876421 1 111 2356778888888 46666654 35
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHh-hCeEEEEecCcE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGH 1101 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~-~D~v~~l~~gg~ 1101 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++. +... +|++++|++ |+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CE
Confidence 99999999999999999999999999999999999999999999997779999999999863 4445 599999985 78
Q ss_pred EEEEcCCC
Q 045902 1102 VIYAGPLG 1109 (1472)
Q Consensus 1102 v~~~g~~~ 1109 (1472)
++..|+..
T Consensus 222 i~~~g~~~ 229 (250)
T 2d2e_A 222 VVATGGPE 229 (250)
T ss_dssp EEEEESHH
T ss_pred EEEEeCHH
Confidence 98888753
No 57
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-37 Score=349.93 Aligned_cols=201 Identities=22% Similarity=0.331 Sum_probs=172.7
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+|+|+|+.+++ |+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999987 9999999999865322 467999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.|+.+..+. ...+ ..++.+++.+||++..|..+++ ||
T Consensus 90 nl~~~~~~~~~----------~~~~--------------------------~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VERD--------------------------RRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----------HHHH--------------------------HHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----------chHH--------------------------HHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99986432210 0000 0135578999999888877765 99
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..|.|+|++.|+. .++.+++|++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765578888887654 56778999999999999999
Q ss_pred ecChhHHH
Q 045902 427 QGPREYVL 434 (1472)
Q Consensus 427 ~G~~~~~~ 434 (1472)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 58
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-37 Score=350.90 Aligned_cols=211 Identities=25% Similarity=0.380 Sum_probs=173.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEh
Confidence 567788776541 0235799999999999999999999999999999999998874 589999999886
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccccccc-------CCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV-------GLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~-------~~~~~~~LSgG 1026 (1472)
.. ..+++.+||++|++.+++ .||+||+.+.. .......++++++.+++.++.+... +. .+..||||
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgG 149 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN--PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGG 149 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC--TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHH
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC--CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHH
Confidence 43 334567999999998876 69999998752 1122345677788888876655432 22 24589999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++. .+.||++++|++ |++++.|
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~--~~~~d~v~~l~~-G~i~~~g 225 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST--VKNADRIIVMEK-GKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG--GTTSSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999995 59999999999863 356999999985 7888888
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 226 ~~ 227 (247)
T 2ff7_A 226 KH 227 (247)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 59
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.9e-37 Score=359.41 Aligned_cols=211 Identities=27% Similarity=0.347 Sum_probs=174.7
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 3588899887752 235699999999999999999999999999999999998874 59999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.. ..+++.+|||+|++.+++ .||+||+.|+... ..+..++++++.+++.+.. ++.++.. ...|||
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSG 193 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGER-GLKLSG 193 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTT-SBCCCH
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCC-cCCCCH
Confidence 643 345678999999998885 6999999875421 2234566677777665543 2334433 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||||+|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|||+++|+++ ....||++++|++ |+++..
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~aD~i~vl~~-G~iv~~ 269 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS--TVVNADQILVIKD-GCIVER 269 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH--HHHTCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH--HHHcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999864 799999999976 3456999999985 799999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 270 G~~ 272 (306)
T 3nh6_A 270 GRH 272 (306)
T ss_dssp ECH
T ss_pred CCH
Confidence 985
No 60
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.3e-37 Score=348.23 Aligned_cols=200 Identities=24% Similarity=0.387 Sum_probs=168.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+. +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 5 l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEEE------
T ss_pred EEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE------
Confidence 66777776541 035799999999999999999999999999999999998874 5899982
Q ss_pred hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-----CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-----LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 958 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-----~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
++.+||++|++.+++.+||+||+.+..... .+. ...++++++.+++.+..++.. ..|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 356899999999988999999998864321 112 245678889999887777653 479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999975 46678999999986 67 777765
Q ss_pred C
Q 045902 1109 G 1109 (1472)
Q Consensus 1109 ~ 1109 (1472)
.
T Consensus 213 ~ 213 (253)
T 2nq2_C 213 R 213 (253)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.5e-37 Score=350.48 Aligned_cols=214 Identities=25% Similarity=0.301 Sum_probs=173.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 47888887765 23579999999999999999999999999999999999742225689999999875
Q ss_pred Ch---hcc-cceeEEeccCCCCCCCCCHHHHHHHHHH-c----CC---Cch---HHHHHHHHHcccc-cccccccCCCCC
Q 045902 957 KQ---ETF-ARISGYCEQNDIHSPNVTIYESLLYSAW-L----RL---PKD---MFVEEVMELVEMK-ALRNSLVGLPGV 1020 (1472)
Q Consensus 957 ~~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-l----~~---~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~ 1020 (1472)
.. ... ++.++|++|++.+++.+||.|++.+... . .. +.+ ..++++++.+++. .+.++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 122 2348999999999999999999976431 1 11 111 3466788888885 45554432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHh-hCeEEEEecC
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1099 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~-~D~v~~l~~g 1099 (1472)
..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|++++++|+|||++||+++. +... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-
Confidence 2499999999999999999999999999999999999999999999997779999999999763 4344 899999985
Q ss_pred cEEEEEcCCC
Q 045902 1100 GHVIYAGPLG 1109 (1472)
Q Consensus 1100 g~v~~~g~~~ 1109 (1472)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 7899888863
No 62
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-38 Score=345.93 Aligned_cols=195 Identities=18% Similarity=0.267 Sum_probs=166.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ ++ ++|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 46677776553 34 699999999999999999999999999999999998774 589999999876
Q ss_pred ChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH
Q 045902 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA 1034 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA 1034 (1472)
. ..++.++|++|++.+++.+||+||+.+....+. .....++++++.+++.+. +.. +..|||||||||+||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLA 145 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHH
Confidence 5 356779999999999999999999998754322 124567888999998776 544 347999999999999
Q ss_pred HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1035 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1035 ~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 9999999999999999999999999999999999867899999999987 355667777655
No 63
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-36 Score=348.62 Aligned_cols=205 Identities=25% Similarity=0.361 Sum_probs=172.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCC-CCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHD-LHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999999875432246799999995 56778999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc--ccccccccCccC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD--ICADIMVGNEMR 342 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~~~dt~vg~~~~ 342 (1472)
+||+.|+.... .. ..+ ....++.+++.+||+ +..++.+++
T Consensus 97 ~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~~gl~~~~~~~~~~~~--- 138 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------DRD--------------PVPLVKKAMEFVGLDFDSFKDRVPFF--- 138 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------TSC--------------SHHHHHHHHHHTTCCHHHHTTCCGGG---
T ss_pred HHHHHHHHHhc-CC--------------------HHH--------------HHHHHHHHHHHcCcCCcccccCChhh---
Confidence 99999864321 00 000 001235678999998 888877654
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|++.|++. ++..++|++++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765 889998887654 667789999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
++++.|+.+++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
No 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.6e-36 Score=341.59 Aligned_cols=200 Identities=27% Similarity=0.421 Sum_probs=161.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999987 9999999999876432 356999999998886 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccc-------cc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA-------DI 335 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-------dt 335 (1472)
||+||+.|+.. .. . . .+ ++.+++.+|+.+.. ++
T Consensus 98 tv~enl~~~~~--~~-~-~------------------~~------------------~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM-S-V------------------EK------------------VIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC-C-H------------------HH------------------HHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC-C-H------------------HH------------------HHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 00 0 0 00 11123333333222 23
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ +.+|+
T Consensus 138 ~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d~ 212 (247)
T 2ff7_A 138 IVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNADR 212 (247)
T ss_dssp BCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSSE
T ss_pred hhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCCE
Confidence 333 3456799999999999999999999999999999999999999999999984 4789999888754 34 46999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 65
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.8e-37 Score=350.87 Aligned_cols=211 Identities=23% Similarity=0.304 Sum_probs=167.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+.. .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 4778888765421 0125699999999999999999999999999999999998874 589999999876
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchH--------HHHHHHHHc--ccccccccccCCCCCCCC
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM--------FVEEVMELV--EMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~--------~~~~v~~~l--~l~~~~~~~~~~~~~~~L 1023 (1472)
.. ..+++.+||++|++.+++ .||+||+.+........+. .++++++.+ ++....+.. +..|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 157 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQL 157 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTS
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCC
Confidence 42 234567999999998877 5999999875322111011 123445555 455444443 3479
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.||++++|++ |++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~i 234 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GSV 234 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999864 4899999999965 3456999999985 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 235 ~~~g~~ 240 (271)
T 2ixe_A 235 CEQGTH 240 (271)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 888875
No 66
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-37 Score=349.38 Aligned_cols=197 Identities=27% Similarity=0.425 Sum_probs=165.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.+||++|++.+++ .|
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 5699999999999999999999999999999999998774 58999999987643 334567999999998877 59
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHccccccccccc-------CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV-------GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~-------~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
|+||+.+... ....+..++++++.+++.++.+... +. .+..|||||||||+|||||+.+|++|+|||||+|
T Consensus 92 v~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~ 169 (243)
T 1mv5_A 92 IRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169 (243)
T ss_dssp HHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCS
T ss_pred HHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 9999987421 1122355778888888877665432 22 2458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+++.|+++. +|+|||++||+++ ..+.+|++++|++ |+++..|+.
T Consensus 170 LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 170 LDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp SCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCH
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999997 6999999999975 3456999999985 788887775
No 67
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.7e-36 Score=346.88 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=168.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCC--CCCC---CceEEEEcCCCCCC-
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT--EFVP---QRTCAYISQHDLHH- 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~~~~---~~~~~yv~Q~d~~~- 259 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++. .... ++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 36999999999999999999999999999999999999987 999999999876 3322 35699999987543
Q ss_pred -CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 260 -GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 260 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+.+||+||+.++..... + .+. . +..+. ...++.+++.+||++..++.++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~---~-----------~~~~~--------------~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ---D-----------IDDEI--------------RNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CCHHH--------------HHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc---C-----------CcHHH--------------HHHHHHHHHHcCChhHhcCChh
Confidence 35699999988532100 0 000 0 00000 0123567899999988887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEEEecCcchHHhccCeE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTM--IISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv--ii~~~q~~~~~~~~fD~i 416 (1472)
+ |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +.|+ |++.|+. .++.+++|+|
T Consensus 161 ~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v 233 (279)
T 2ihy_A 161 Y-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKI 233 (279)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEE
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEE
Confidence 5 9999999999999999999999999999999999999999999999775 7888 8877664 4677899999
Q ss_pred EEecCCeEEEecChhHH
Q 045902 417 ILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~ 433 (1472)
++|++|++++.|+++++
T Consensus 234 ~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999998776
No 68
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.8e-36 Score=343.87 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=169.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+.. ...+.+|+|||++|++||++||+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 3778888765421 011469999999999999999999999999999999999875 3 79999999876
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccc-------cccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN-------SLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~-------~~~~~~~~~~LSgG 1026 (1472)
.. ..+++.+||++|++.+++ .||+||+.+... . ..++.+.++++.+++.+..+ +..+.. +..||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~-~~~LSgG 159 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-D-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK-GMKLSGG 159 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-T-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-SBCCCHH
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-C-CCHHHHHHHHHHhCCHHHHHhccccccccccCC-cCcCCHH
Confidence 32 334567999999998876 699999987421 1 22344566777777655432 222222 4589999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||++||+++. .+.||++++|++ |+++..|
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~--~~~~d~i~~l~~-G~i~~~g 235 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST--ISSAESIILLNK-GKIVEKG 235 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--STTCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH--HHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999964 8999999999863 356999999985 7888888
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 236 ~~ 237 (260)
T 2ghi_A 236 TH 237 (260)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 69
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.3e-36 Score=344.22 Aligned_cols=209 Identities=22% Similarity=0.373 Sum_probs=167.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46899999999999999999999999999999999999987 9999999999865432 356999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh--CCcccccccccCc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL--GLDICADIMVGNE 340 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l--gL~~~~dt~vg~~ 340 (1472)
||+||+.|+..... .. + +..+... ....+.+++.+ ||+...+..+
T Consensus 108 tv~enl~~~~~~~~--~~-~---~~~~~~~------------------------~~~~~~~l~~l~~gl~~~~~~~~--- 154 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--TM-E---EITAVAM------------------------ESGAHDFISGFPQGYDTEVGETG--- 154 (271)
T ss_dssp BHHHHHHTTCSSCC--CH-H---HHHHHHH------------------------HHTCHHHHHHSTTGGGSBCCGGG---
T ss_pred cHHHHHhhhcccCC--hH-H---HHHHHHH------------------------HHhHHHHHHhhhcchhhhhcCCc---
Confidence 99999998642110 00 0 0000000 01124467777 6766666554
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+..++|+|++.|++. .+ ..+|+|++|+
T Consensus 155 --~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~ 230 (271)
T 2ixe_A 155 --NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLK 230 (271)
T ss_dssp --TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEE
T ss_pred --CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 4599999999999999999999999999999999999999999999986545889998887653 44 4599999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 70
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.9e-36 Score=341.49 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=163.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeE-EeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISG-YCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~g-yv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|++++ ||+++|+|||||||||||++|+|.. +. +|+|.++|.+......++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 569999999999 9999999999999999999999987 53 899999998754211155789 99999877 89999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~ 1060 (1472)
||+.+.........+.++++++.+++. +..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++..
T Consensus 92 enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 166 (263)
T 2pjz_A 92 DIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166 (263)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHH
Confidence 999987654333345678899999998 7766653 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCccHHHHHhhC-eEEEEecCcEEEEEcCC
Q 045902 1061 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1061 i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D-~v~~l~~gg~v~~~g~~ 1108 (1472)
+++.|+++++ |||++||+++ .+.+.|| ++++|++ |++++.|+.
T Consensus 167 l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 167 ISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp HHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 9999999853 9999999986 3567899 9999985 789888874
No 71
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.2e-36 Score=337.22 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=168.7
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 263 (1472)
++|+|+|+.+++||+++|+||||||||||||+|+|.++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999987 3 999999998865432 356999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.++.. ... . . ..++.+++.+||++..|..+++
T Consensus 90 v~e~l~~~~~-~~~----------~-~---------------------------~~~~~~l~~~~l~~~~~~~~~~---- 126 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R-T---------------------------ELLNDVAGALALDDKLGRSTNQ---- 126 (249)
T ss_dssp HHHHHHTTCS-STT----------C-H---------------------------HHHHHHHHHTTCGGGTTSBGGG----
T ss_pred HHHHHHHhhc-cCC----------c-H---------------------------HHHHHHHHHcCChhHhcCChhh----
Confidence 9999987521 000 0 0 0135578899999888876654
Q ss_pred CCChHHHHHHHHHHHHhCCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 344 GISGGQKKRVTTGEMLVGPAK-------ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~-------illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
|||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++++. |.|+|++.|++ .++.+++|++
T Consensus 127 -LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v 203 (249)
T 2qi9_C 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRA 203 (249)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEE
Confidence 99999999999999999999 99999999999999999999999999764 88988887654 4667899999
Q ss_pred EEecCCeEEEecChhHH
Q 045902 417 ILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~ 433 (1472)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 72
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.6e-36 Score=338.27 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=163.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC--CCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK--SDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~--~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 6666 8999999999876432 23489999999999
Q ss_pred CCCCHHHHHHHhhhc-cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCC-cccccccc
Q 045902 260 GEMTVRETLDFSGRC-LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGL-DICADIMV 337 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL-~~~~dt~v 337 (1472)
+.+||+||+.+.... .+... ... +. ...++.+++.+|| ++..|+.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~--------~~~----------~~--------------~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV--------GVA----------EF--------------WTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC--------CHH----------HH--------------HHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC--------CHH----------HH--------------HHHHHHHHHHcCCChhHhcCCc
Confidence 999999999885421 11000 000 00 0123567899999 47777665
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc-cCeE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-FDDI 416 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~-fD~i 416 (1472)
++ +|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++..+ +|+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQR-ILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSG-GGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCCEE
Confidence 42 3999999999999999999999999999999999999999999999865 5789998887754 55666 5999
Q ss_pred EEecCCeEEEecChhH
Q 045902 417 ILLSEGEIVYQGPREY 432 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~ 432 (1472)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 73
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.7e-35 Score=333.10 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=165.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ++.++|++|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999987 999982 35699999999999999999
Q ss_pred HHHHHhhhcc-CCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 266 ETLDFSGRCL-GVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 266 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
||+.++.... +... .+..+. ...++.+++.+||++..+..+++
T Consensus 85 enl~~~~~~~~~~~~-----------------~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFA-----------------KPKSHD--------------YQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCTTC-----------------CCCHHH--------------HHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccccc-----------------CCCHHH--------------HHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999864211 1000 000000 01235678999999888877654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999999775588998887764 46778999999999999
Q ss_pred EEecChhHH
Q 045902 425 VYQGPREYV 433 (1472)
Q Consensus 425 v~~G~~~~~ 433 (1472)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
No 74
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.5e-35 Score=335.26 Aligned_cols=221 Identities=22% Similarity=0.253 Sum_probs=171.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS--DKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.. +|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 455 8999999998865432 13499999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-cccccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVG 338 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg 338 (1472)
+.+||+|++.+..... .. .......+..+. ...++.+++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~------------~~-~~~~~~~~~~~~--------------~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAV------------RS-YRGQETLDRFDF--------------QDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHH------------HH-GGGCCCCCHHHH--------------HHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhh------------hh-hhccccCCHHHH--------------HHHHHHHHHHcCCChhHhcCCcc
Confidence 9999999998743100 00 000000000000 01245678999996 46666553
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc-cCeEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-FDDII 417 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~-fD~ii 417 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .++|+|++.|++ .++..+ +|+++
T Consensus 163 ----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVH 236 (267)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEE
T ss_pred ----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEE
Confidence 14999999999999999999999999999999999999999999999864 478998887765 355555 89999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCC
Q 045902 418 LLSEGEIVYQGPREYVLDFFESVGFR 443 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~~~F~~~G~~ 443 (1472)
+|++|++++.|+++++.. .+..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4455543
No 75
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-36 Score=337.84 Aligned_cols=202 Identities=24% Similarity=0.348 Sum_probs=165.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46899999999999999999999999999999999999987 9999999999865432 457999999998887 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccc------
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIM------ 336 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~------ 336 (1472)
||+||+.|+... .. . +. .++.+++.+|+.+..+..
T Consensus 91 tv~enl~~~~~~-~~-~-------------------~~------------------~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY-T-------------------DE------------------DLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS-C-------------------HH------------------HHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC-C-------------------HH------------------HHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 0 00 023345666766554433
Q ss_pred -ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 337 -VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 337 -vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..+|+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~-~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS-TI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH-HH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH-HH-HhCCE
Confidence 32 3456799999999999999999999999999999999999999999999986 4789999888754 44 56999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 045902 416 IILLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~~ 435 (1472)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.9e-35 Score=334.41 Aligned_cols=206 Identities=22% Similarity=0.355 Sum_probs=162.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4689999999999999999999999999999999999864 7999999998865432 356999999998885 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCcccccccccCcc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLDICADIMVGNEM 341 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~~ 341 (1472)
||+||+.|+.. .. .. .++.+.++. .+ +.+.+ ++++..||.++ +.
T Consensus 108 tv~enl~~~~~--~~-~~-------------------~~~~~~l~~---~~---------l~~~~~~l~~~~~~~~~-~~ 152 (260)
T 2ghi_A 108 TIKYNILYGKL--DA-TD-------------------EEVIKATKS---AQ---------LYDFIEALPKKWDTIVG-NK 152 (260)
T ss_dssp EHHHHHHTTCT--TC-CH-------------------HHHHHHHHH---TT---------CHHHHHTSTTGGGCEES-SS
T ss_pred CHHHHHhccCC--CC-CH-------------------HHHHHHHHH---hC---------CHHHHHhcccccccccc-CC
Confidence 99999988521 00 00 000000000 00 01111 34555666665 45
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|+|++.|++. .+ +.+|+|++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~-~~~d~i~~l~~ 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI-SSAESIILLNK 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-TTCSEEEEEET
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCEEEEEEC
Confidence 677999999999999999999999999999999999999999999999853 689999888764 33 46999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+++..|+++++..
T Consensus 229 G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 229 GKIVEKGTHKDLLK 242 (260)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988753
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.5e-35 Score=331.74 Aligned_cols=194 Identities=22% Similarity=0.178 Sum_probs=164.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEE-EEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCA-YISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999999875431245799 99999877 8999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccccccCccCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVGNEMRR 343 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~~ 343 (1472)
+||+.+...... .+ ...++.+++.+||+ +..++.+++
T Consensus 91 ~enl~~~~~~~~---------------------~~-----------------~~~~~~~l~~~gl~~~~~~~~~~~---- 128 (263)
T 2pjz_A 91 NDIVYLYEELKG---------------------LD-----------------RDLFLEMLKALKLGEEILRRKLYK---- 128 (263)
T ss_dssp HHHHHHHHHHTC---------------------CC-----------------HHHHHHHHHHTTCCGGGGGSBGGG----
T ss_pred HHHHHHhhhhcc---------------------hH-----------------HHHHHHHHHHcCCChhHhcCChhh----
Confidence 999988532110 00 00135578899998 877776654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC-eEEEecCC
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD-DIILLSEG 422 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD-~iilL~~G 422 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|++.|++ .++.+++| ++++|++|
T Consensus 129 -LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 129 -LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEECC
Confidence 999999999999999999999999999999999999999999998642 888877664 46778999 99999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 78
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.8e-35 Score=372.06 Aligned_cols=208 Identities=24% Similarity=0.388 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46899999999999999999999999999999999999998 9999999999887643 3579999999988865
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.... .. +++. +++...+. +.. .-.+++..||.+| +.+
T Consensus 430 tv~eni~~~~~~~---~~-------------------~~~~---~~~~~~~~------~~~--~~~lp~g~~t~~~-~~g 475 (578)
T 4a82_A 430 TVKENILLGRPTA---TD-------------------EEVV---EAAKMANA------HDF--IMNLPQGYDTEVG-ERG 475 (578)
T ss_dssp BHHHHHGGGCSSC---CH-------------------HHHH---HHHHHTTC------HHH--HHTSTTGGGCBCC-GGG
T ss_pred cHHHHHhcCCCCC---CH-------------------HHHH---HHHHHhCc------HHH--HHhCcchhhhhhc-cCC
Confidence 9999998853210 00 0111 11111110 111 2245666788888 567
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++. .++|+|++.|++. . .+.+|+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~-~~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS-T-ITHADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG-G-TTTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999885 3688888877765 3 4569999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 79
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.8e-35 Score=328.57 Aligned_cols=200 Identities=22% Similarity=0.378 Sum_probs=159.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~-----------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWE-----------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSS-----------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeC-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 467788776542 1235799999999999999999999999999999999998874 589999998
Q ss_pred ChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccccc-------ccCCCCCCCCCHHHHH
Q 045902 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS-------LVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~-------~~~~~~~~~LSgGqrq 1029 (1472)
.++|++|++.+++. ||+||+.+... . .+...+++++.+++.+..+. .++.+ ...|||||||
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LSgGqkq 137 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS--Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEG-GITLSGGQRA 137 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC--C-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTTSCHHHHH
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC--c-ChHHHHHHHHHhCcHHHHHhCcccccccccCC-CCcCCHHHHH
Confidence 37999999988875 99999987431 1 12234455555555433222 22222 3589999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH-HHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~-l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ ..+.||++++|++ |+++..|+.
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999997 45654 4899999999975 3456999999986 788888875
No 80
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=330.43 Aligned_cols=199 Identities=22% Similarity=0.367 Sum_probs=158.4
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+. .+++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 56777776542 113569999999999999999999999999999999999987 5699999998
Q ss_pred hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHHHHHH
Q 045902 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTEQRKR 1030 (1472)
Q Consensus 958 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgGqrqR 1030 (1472)
.+||++|++.+ +.+||+||+.+.... . ....+++.+.+++.+.. ++..+. .+..||||||||
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqR 135 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL--E-EPYYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQR 135 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC--C-TTHHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHH
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc--C-HHHHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHH
Confidence 27999999864 688999999875322 1 22344555555543211 111222 246899999999
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHH---HHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~---~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
|+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. .+.||++++|++ |+++..|+
T Consensus 136 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~--~~~~d~v~~l~~-G~i~~~g~ 211 (237)
T 2cbz_A 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY--LPQVDVIIVMSG-GKISEMGS 211 (237)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT--GGGSSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH--HHhCCEEEEEeC-CEEEEeCC
Confidence 999999999999999999999999999999999995 443 58999999999874 357999999985 78888887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 212 ~ 212 (237)
T 2cbz_A 212 Y 212 (237)
T ss_dssp H
T ss_pred H
Confidence 5
No 81
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=351.45 Aligned_cols=200 Identities=24% Similarity=0.270 Sum_probs=164.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|||+.|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 468999999999999999999999999999999999986 5 8999999999887654 367999999999887 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC---
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN--- 339 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~--- 339 (1472)
||+||+.+.... . + . .++.+++.+||++..+.....
T Consensus 109 tv~enl~~~~~~----~---------~----------~------------------~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH----S---------D----------Q------------------EIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS----C---------H----------H------------------HHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc----C---------H----------H------------------HHHHHHHHhCCHHHHhhccccccc
Confidence 999999642110 0 0 0 123356667776655544321
Q ss_pred ---ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 340 ---EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 340 ---~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+.|+|++.|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEE
Confidence 3345599999999999999999999999999999999999999999999863 467888877764 455679999
Q ss_pred EEecCCeEEEecChhHHHH
Q 045902 417 ILLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~~ 435 (1472)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
No 82
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-35 Score=370.52 Aligned_cols=208 Identities=26% Similarity=0.343 Sum_probs=169.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46899999999999999999999999999999999999998 9999999999877653 367999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.... . ++++.+..+.+.+ +..+ -.+++..||.+| +.+
T Consensus 432 tv~eni~~~~~~~---~-------------------~~~~~~~~~~~~~---------~~~i--~~l~~g~~~~~~-~~~ 477 (587)
T 3qf4_A 432 TIKENLKWGREDA---T-------------------DDEIVEAAKIAQI---------HDFI--ISLPEGYDSRVE-RGG 477 (587)
T ss_dssp EHHHHHTTTCSSC---C-------------------HHHHHHHHHHTTC---------HHHH--HTSSSGGGCEEC-SSS
T ss_pred cHHHHHhccCCCC---C-------------------HHHHHHHHHHhCc---------HHHH--HhcccchhhHhc-CCC
Confidence 9999998753210 0 0011111111110 1111 245566788887 567
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.|++. ....+|+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~--~~~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIP--TALLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH--HHTTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH--HHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999874 4789999888764 44689999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 83
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=353.45 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=175.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. .++..+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|+++
T Consensus 19 ~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 477888877652 124579999999999999999999999999999999999874 489999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCC------CCCCCCCHHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL------PGVDGLSTEQ 1027 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~------~~~~~LSgGq 1027 (1472)
.. ..+++.+|||+|++.+++ +||+||+.+.. ...++.++++++.+++.++.++.... .....|||||
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 43 335678999999999887 69999996422 22345678899999998877665331 1123499999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||||+|||||+.+|++|+|||||||||+.++..+++.|+++. .|+|||+++|+.+ ....+|++++|++ |+++..|+
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~ 236 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECC
Confidence 999999999999999999999999999999999999999874 4899999999965 4567999999985 79999998
Q ss_pred CC
Q 045902 1108 LG 1109 (1472)
Q Consensus 1108 ~~ 1109 (1472)
+.
T Consensus 237 ~~ 238 (390)
T 3gd7_A 237 IL 238 (390)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 84
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.8e-34 Score=367.27 Aligned_cols=214 Identities=29% Similarity=0.386 Sum_probs=177.1
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++. .+++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 342 i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 788998877631 012469999999999999999999999999999999999887 45899999999864
Q ss_pred h---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHH
Q 045902 958 Q---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgG 1026 (1472)
+ ..+++.+|||+|++.+++ .||+||+.++.... ...++.++++++.+++.+.. |+.+|.. ..+||||
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~~~LSgG 487 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-GVLLSGG 487 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-SCCCCHH
T ss_pred hCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCC-CCcCCHH
Confidence 3 345678999999998886 59999998854221 12345677888888876543 4445443 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|||+++|+++ ..+.||++++|++ |+++..|
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~~~g 563 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLDQ-GKITEYG 563 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999976 899999999975 4467999999985 7899988
Q ss_pred CCC
Q 045902 1107 PLG 1109 (1472)
Q Consensus 1107 ~~~ 1109 (1472)
+.+
T Consensus 564 ~~~ 566 (595)
T 2yl4_A 564 KHE 566 (595)
T ss_dssp CSC
T ss_pred CHH
Confidence 864
No 85
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8e-35 Score=321.40 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=155.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999987 999999999876 23567999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.++....+. .. + ...++.+++.+||++. +..+. .||
T Consensus 98 nl~~~~~~~~~--------------------~~-~---------------~~~~~~~l~~~gl~~~-~~~~~-----~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV--------------------KV-N---------------KNEIMDALESVEVLDL-KKKLG-----ELS 135 (214)
T ss_dssp HHHHHHHHTTC--------------------CC-C---------------HHHHHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHhcCC--------------------ch-H---------------HHHHHHHHHHcCCCcC-CCChh-----hCC
Confidence 99886432110 00 0 0113557889999876 65554 599
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. ++|+|++.|++. ++.+++|+|++ ..|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEE-eCCcc
Confidence 99999999999999999999999999999999999999999998764 789999887764 56677777764 44554
No 86
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.1e-34 Score=366.78 Aligned_cols=210 Identities=23% Similarity=0.375 Sum_probs=167.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+..+ ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999998 9999999999977543 357999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++....... .++++++..+.+.+ +..+ -.+++..||.+| +.+
T Consensus 433 tv~eni~~~~~~~~~~-------------------~~~~~~~~~~~~~l---------~~~~--~~l~~g~~~~~~-~~~ 481 (595)
T 2yl4_A 433 SIAENIAYGADDPSSV-------------------TAEEIQRVAEVANA---------VAFI--RNFPQGFNTVVG-EKG 481 (595)
T ss_dssp BHHHHHHTTSSSTTTS-------------------CHHHHHHHHHHTTC---------HHHH--HTSSSGGGCBCS-SSS
T ss_pred CHHHHHhhcCCCcccc-------------------CHHHHHHHHHHcCC---------HHHH--HhCccccccccc-CCC
Confidence 9999999864210000 01111111111111 1111 134566789887 456
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.+|+|++|++|
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLS--TIKNANMVAVLDQG 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHH--HHHHSSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHcCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999865 689988887754 34569999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+++++.
T Consensus 558 ~i~~~g~~~~l~ 569 (595)
T 2yl4_A 558 KITEYGKHEELL 569 (595)
T ss_dssp EEEEEECSCC--
T ss_pred EEEEECCHHHHH
Confidence 999999998875
No 87
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.6e-34 Score=321.86 Aligned_cols=196 Identities=21% Similarity=0.311 Sum_probs=152.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46899999999999999999999999999999999999987 99999998 38999999988875 999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.|+.... .. .. +...+.. ..+..++.+ ....++.++ +.+..|
T Consensus 87 enl~~~~~~~----~~----~~---------------~~~~~~~---------~l~~~~~~~--~~~~~~~~~-~~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----EY----RY---------------RSVIKAC---------QLEEDISKF--AEKDNIVLG-EGGITL 131 (229)
T ss_dssp HHHHTTSCCC----HH----HH---------------HHHHHHT---------TCHHHHTTS--TTGGGSCBC-TTCTTS
T ss_pred HHhhccCCcC----hH----HH---------------HHHHHHh---------CcHHHHHhC--ccccccccc-CCCCcC
Confidence 9998853210 00 00 0000000 001112222 222344454 345679
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRF-MRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~-L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
||||||||+|||||+.+|++++|||||+|||+.++..+++. ++++. .++|+|++.|++. ++ ..+|++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH-HH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH-HH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999997 45553 3689988887753 44 46999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998774
No 88
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.3e-34 Score=365.35 Aligned_cols=209 Identities=22% Similarity=0.357 Sum_probs=168.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46899999999999999999999999999999999999998 9999999999876543 357999999998887 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.. ... . ++++++..+ ..+ .+..++. +++..||.+| +.+
T Consensus 432 tv~eni~~~~~-~~~-~-------------------~~~~~~~l~---~~~------l~~~~~~--~p~g~~~~~~-~~~ 478 (582)
T 3b60_A 432 TVANNIAYART-EEY-S-------------------REQIEEAAR---MAY------AMDFINK--MDNGLDTIIG-ENG 478 (582)
T ss_dssp BHHHHHHTTTT-SCC-C-------------------HHHHHHHHH---TTT------CHHHHHH--STTGGGSBCC-TTS
T ss_pred CHHHHHhccCC-CCC-C-------------------HHHHHHHHH---HcC------CHHHHHh--cccccccccc-CCC
Confidence 99999988531 000 0 011111111 111 1122222 3445688887 467
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.+|+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH--HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999863 789999888764 34579999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999998864
No 89
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.7e-34 Score=364.73 Aligned_cols=209 Identities=23% Similarity=0.365 Sum_probs=167.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999998 8999999999876543 467999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.. .. . +++++++..+.+.+ +..++ .+++..||.+| +.+
T Consensus 432 tv~eni~~~~~-~~--~------------------~~~~~~~~~~~~~l---------~~~~~--~~p~g~~t~~~-~~~ 478 (582)
T 3b5x_A 432 TIANNIAYAAE-GE--Y------------------TREQIEQAARQAHA---------MEFIE--NMPQGLDTVIG-ENG 478 (582)
T ss_pred cHHHHHhccCC-CC--C------------------CHHHHHHHHHHCCC---------HHHHH--hCcccccchhc-CCC
Confidence 99999988531 00 0 00111111111111 11222 23445678887 457
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.+|+|++|++|
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 554 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS--TIEQADEILVVDEG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999853 789999888764 34579999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998753
No 90
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=321.91 Aligned_cols=196 Identities=24% Similarity=0.308 Sum_probs=153.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46899999999999999999999999999999999999887 99999998 3899999986 4688999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-cccccccCccCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI-CADIMVGNEMRRG 344 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg~~~~~g 344 (1472)
||+.|+.... .. ..++..++. .+.+.+++.. ..+|.++ ..+..
T Consensus 84 enl~~~~~~~--~~---------------------~~~~~~~~~------------~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EP---------------------YYRSVIQAC------------ALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TT---------------------HHHHHHHHT------------TCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HH---------------------HHHHHHHHH------------hhHHHHHhcccccccccc-CCCCC
Confidence 9998853211 00 000000000 0122233321 2233333 45667
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMR---QMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~---~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+ ++. .++|+|++.|++. .+ +.+|++++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 332 3789999888765 33 57999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|++++.|+++++..
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
No 91
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-34 Score=364.81 Aligned_cols=213 Identities=22% Similarity=0.297 Sum_probs=173.9
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 35889998876531 235699999999999999999999999999999999998874 59999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.. ..+++.+|||+|++.+++. ||+||+.++.. ...++.+.++++..++.+.. |+.++.. ..+|||
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~-~~~LSg 482 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG-GRNFSG 482 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSS-SCSSCH
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCC-CCCcCH
Confidence 643 3456789999999988865 99999986531 12234455555555554322 3344443 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....+|++++|++ |+++..
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~-G~i~~~ 558 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE-GKVAGF 558 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999999984 5899999999975 4568999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+.+
T Consensus 559 g~~~ 562 (587)
T 3qf4_A 559 GTHK 562 (587)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9864
No 92
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.2e-34 Score=365.65 Aligned_cols=212 Identities=24% Similarity=0.320 Sum_probs=175.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 4788888876521 124699999999999999999999999999999999998874 589999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccc-------cccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN-------SLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~-------~~~~~~~~~~LSgG 1026 (1472)
.. ..+++.+|||+|++.+++. ||+||+.+... ....++.++++++.+++.+..+ +.++.. ..+||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgG 484 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGG 484 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHH
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHH
Confidence 43 3456779999999988874 99999988531 1223456777888887765543 334433 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|||+++|+++. .+.||++++|++ |+++..|
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g 560 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED-GIIVERG 560 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEec
Confidence 99999999999999999999999999999999999999999965 8999999999863 467999999985 7899988
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 561 ~~ 562 (582)
T 3b60_A 561 TH 562 (582)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 93
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.9e-34 Score=364.03 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=173.4
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++. ++..+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 35888998876531 235699999999999999999999999999999999998874 59999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.+ ..+++.+|||+|++.+++. ||+||+.++.. ...++.+.++++..++.+.. |+.+|.. ..+|||
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~-g~~LSg 480 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSG 480 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCH
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccC-CCcCCH
Confidence 643 4456789999999988876 99999987521 12234455666666654432 2333332 347999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. .+.||++++|++ |+++..
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~ 556 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN-GHIVET 556 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999999985 47999999999874 467999999985 799999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 557 g~~ 559 (578)
T 4a82_A 557 GTH 559 (578)
T ss_dssp ECH
T ss_pred CCH
Confidence 985
No 94
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-34 Score=365.57 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999999987653 357999999998885 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.... . ++++.+..+ ..+ .+..++ .+++..||.+| +.+
T Consensus 444 tv~eni~~~~~~~---~-------------------~~~~~~~~~---~~~------~~~~~~--~~~~g~~t~~~-~~g 489 (598)
T 3qf4_B 444 TVKENLKYGNPGA---T-------------------DEEIKEAAK---LTH------SDHFIK--HLPEGYETVLT-DNG 489 (598)
T ss_dssp BHHHHHHSSSTTC---C-------------------TTHHHHHTT---TTT------CHHHHH--TSTTGGGCBCH-HHH
T ss_pred cHHHHHhcCCCCC---C-------------------HHHHHHHHH---HhC------CHHHHH--hccccccchhc-CCC
Confidence 9999998853210 0 111111111 000 111222 34556688887 566
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.|++. . .+.+|+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~-~~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-T-IKNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-H-HHHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999985 4789999888775 3 4569999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 95
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.3e-34 Score=364.03 Aligned_cols=212 Identities=24% Similarity=0.318 Sum_probs=176.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEh
Confidence 5888998877631 124699999999999999999999999999999999998774 589999999886
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccccc-------ccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS-------LVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~-------~~~~~~~~~LSgG 1026 (1472)
.. ..+++.+|||+|++.+++. ||+||+.++.. ....++.++++++.+++.+..+. .++.. ..+||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgG 484 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGG 484 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHH
Confidence 42 4456789999999988874 99999988531 11234567788888887765443 33333 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|||+++|+++ ..+.||++++|++ |+++..|
T Consensus 485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~~~g 560 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE-GEIIERG 560 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999975 4567999999985 7899988
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 561 ~~ 562 (582)
T 3b5x_A 561 RH 562 (582)
T ss_pred CH
Confidence 75
No 96
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-34 Score=396.05 Aligned_cols=211 Identities=24% Similarity=0.348 Sum_probs=175.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
..++|+|+|++|+|||.++|+||+|||||||+++|.|.++|+ +|+|.+||+++++... ++.++||+|++.+|.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~- 1166 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD- 1166 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-
Confidence 446999999999999999999999999999999999999998 9999999999998764 478999999999885
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||||||.|+..-.. ..++++.++.+.+.++ |. .-.|++..||.|| +.
T Consensus 1167 gTIreNI~~gld~~~--------------------~sd~ei~~Al~~a~l~--------~~---I~~Lp~GldT~vg-e~ 1214 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSS--------------------VTMAQVEEAARLANIH--------NF---IAELPEGFETRVG-DR 1214 (1321)
T ss_dssp EEHHHHHSSSSCTTT--------------------SCHHHHHHHHHHTTCH--------HH---HHTSTTTTCSEET-TT
T ss_pred ccHHHHHhccCCCCC--------------------CCHHHHHHHHHHhCCh--------HH---HHcCcCCCCCEec-CC
Confidence 599999987531100 0122333333332221 22 2357788899999 56
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+.+||||||||++|||||+.+|+||+||||||+||+.|...|.+.|++.. .++|+|+..|.. .+...+|+|+||++
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRL--sTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRL--NTVMNADCIAVVSN 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSS--STTTTCSEEEEESS
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCH--HHHHhCCEEEEEEC
Confidence 77899999999999999999999999999999999999999999998864 478988887754 46778999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+|+++|+++++++
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999975
No 97
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.5e-34 Score=361.91 Aligned_cols=210 Identities=25% Similarity=0.384 Sum_probs=170.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ +++++|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEh
Confidence 578899887652 234699999999999999999999999999999999999874 599999999886
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccc-------cCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSL-------VGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~-------~~~~~~~~LSgG 1026 (1472)
.. ..+++.+|||+|++.+++ .||+||+.++.. ...++.++++++..++.+..+.. +|.. ..+||||
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~-g~~LSgG 495 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDN-GEDLSQG 495 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHH-HTTSCHH
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchhcCC-CCCCCHH
Confidence 43 456678999999998885 599999987521 11223455555555554433322 2211 2479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. .+.||++++|++ |+++..|
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~g 571 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRD-GEIVEMG 571 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECS-SSEEECS
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999985 58999999999873 456999999985 7899999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 572 ~~ 573 (598)
T 3qf4_B 572 KH 573 (598)
T ss_dssp CH
T ss_pred CH
Confidence 85
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.9e-33 Score=321.00 Aligned_cols=185 Identities=23% Similarity=0.389 Sum_probs=149.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.+|+||||+|++||++||+|||||||||||++|+|..+ +.+|+|.++| .++|++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 468999999999999999999999999999999999877 5699999998 37999999988875 9999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccc-------cCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSL-------VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~-------~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
|+. .. .. .....+++++.+++.+..+.. .+. .+..||||||||++|||||+.+|++|+|||||+|||+
T Consensus 118 nl~-~~--~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 118 NII-GV--SY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp HHH-TT--CC-CHHHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred Hhh-Cc--cc-chHHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 997 32 11 223344556666654432221 221 1357999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1056 RAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1056 ~~~~~i~~~l-~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |+++..|+..
T Consensus 193 ~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 193 LTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp HHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCHH
Confidence 9999999964 5554 4899999999975 3457999999985 7888888753
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.98 E-value=1.8e-32 Score=316.22 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=148.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999999987 89999988 3899999998887 49999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+. +... .... .+...+.. + .+..++.+ ....++.++ +.+..||
T Consensus 118 nl~-~~~~----~~~~-------------------~~~~~~~~---~------l~~~l~~~--~~~~~~~~~-~~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DEYR-------------------YRSVIKAC---Q------LEEDISKF--AEKDNIVLG-EGGITLS 161 (290)
T ss_dssp HHH-TTCC----CHHH-------------------HHHHHHHT---T------CHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----chHH-------------------HHHHHHHh---C------hHHHHHhc--cccccchhc-CccCcCC
Confidence 997 3211 0000 00000000 0 11122222 222344444 3456799
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFM-RQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L-~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
|||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .++|+|++.|++. .+ ..+|++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH-HH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHH-HH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999974 4543 3789998887753 44 569999999999999
Q ss_pred EecChhHHH
Q 045902 426 YQGPREYVL 434 (1472)
Q Consensus 426 ~~G~~~~~~ 434 (1472)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=2.1e-31 Score=364.09 Aligned_cols=210 Identities=23% Similarity=0.320 Sum_probs=170.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
.++|+|+|+.++|||+++|+||||||||||+++|+|.++|+ +|+|.+||++++.... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 46899999999999999999999999999999999999998 9999999999987653 46799999999776 57
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++...... .++++.+..+.+.+ +.. .-.+++..||.|| +.+
T Consensus 1122 ti~eNi~~~~~~~~~--------------------~~~~i~~~~~~~~~---------~~~--i~~l~~gldt~vg-e~G 1169 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV--------------------SYEEIVRAAKEANI---------HQF--IDSLPDKYNTRVG-DKG 1169 (1284)
T ss_dssp BHHHHHTCCCSSCCC--------------------CHHHHHHHHHHHTC---------HHH--HSSTTTGGGCBCS-TTS
T ss_pred cHHHHHhccCCCCCC--------------------CHHHHHHHHHHhCc---------HHH--HHhCccccccccC-CCC
Confidence 999999875321110 01111111111111 111 1245677899998 567
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. .|+|+|++.|... .+ ..+|+|++|++|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSEEEEEETB
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999998853 4788888877665 34 569999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=2.6e-29 Score=317.34 Aligned_cols=191 Identities=25% Similarity=0.302 Sum_probs=160.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577888889999999999999999999999999999987 899875 2369999999887788999998
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+...... ... . ...++.+++.+||.+.+|+.+++ |||
T Consensus 438 ~~~~~~~-----------~~~--~-------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----------KLN--S-------------------------NFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHH-----------HHH--C-------------------------HHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC--H-------------------------HHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 8542100 000 0 00135578899999888877765 999
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC--CeEE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE--GEIV 425 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~--G~iv 425 (1472)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999976678888887654 5678889999999986 8889
Q ss_pred EecChhHHHH
Q 045902 426 YQGPREYVLD 435 (1472)
Q Consensus 426 ~~G~~~~~~~ 435 (1472)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=3.7e-29 Score=313.06 Aligned_cols=191 Identities=25% Similarity=0.300 Sum_probs=158.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 477778888999999999999999999999999999987 899875 2359999999877788999998
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+...... ... + ...++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~-----------~~~----------~-----------------~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDAS-----------KLN----------S-----------------NFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHH-----------HHT----------C-----------------HHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC----------H-----------------HHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 7542100 000 0 00134567888998888877765 999
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC--CeEE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE--GEIV 425 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~--G~iv 425 (1472)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.| ...++..++|+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH-d~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987656788888765 45678889999999986 8899
Q ss_pred EecChhHHHH
Q 045902 426 YQGPREYVLD 435 (1472)
Q Consensus 426 ~~G~~~~~~~ 435 (1472)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.2e-28 Score=307.29 Aligned_cols=192 Identities=21% Similarity=0.217 Sum_probs=157.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
.|+++|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999997 89998764 358999998777778999999
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+.+..... .. .. ....+.+++.+||.+..|..+++ |||
T Consensus 351 l~~~~~~~-~~-------------------~~-----------------~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDA-LS-------------------TS-----------------SWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSST-TC-------------------TT-----------------SHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhc-cc-------------------hh-----------------HHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 97632100 00 00 00134567788998888877765 999
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC--CeEE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE--GEIV 425 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~--G~iv 425 (1472)
||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.| ...++..++|+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsH-dl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH-DLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999998777888888765 45688889999999986 6666
Q ss_pred EecChhHHH
Q 045902 426 YQGPREYVL 434 (1472)
Q Consensus 426 ~~G~~~~~~ 434 (1472)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.95 E-value=8.2e-31 Score=329.05 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=113.9
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW 989 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 989 (1472)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.|++|++. .++.++. ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~---~~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA---YS 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH---HT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH---HH
Confidence 459999999999999999999999999996432 122 12445555531 1222221 11
Q ss_pred cCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH-----HHHHHHHH
Q 045902 990 LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----AAAIVMRT 1064 (1472)
Q Consensus 990 l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~-----~~~~i~~~ 1064 (1472)
+..+ .+++ ...++..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .+..+.++
T Consensus 331 ~g~~----~~~~-~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 331 WGMD----FEEM-ERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp TSCC----HHHH-HHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred cCCC----HHHH-HhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHH
Confidence 1111 2222 234454444432 3479999999999999999999999999 99999999 99999999
Q ss_pred HHHHhhCCCEEEEEecCcc---------HHHHHhhCeEEEEecC
Q 045902 1065 VRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1065 l~~l~~~g~tvi~t~H~~~---------~~~~~~~D~v~~l~~g 1099 (1472)
++.+++.|.|||+++|+.. ..+...+|++++|.+|
T Consensus 400 l~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 400 TGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 9999888999999999971 2355679999999863
No 105
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-28 Score=306.90 Aligned_cols=192 Identities=25% Similarity=0.244 Sum_probs=159.0
Q ss_pred eeeeceeeEEeCC-----eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 187 EILHDVSGIVKPS-----RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 187 ~iL~~vs~~i~~G-----e~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
.+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5789999999998 789999999999999999999999987 7752 1 23468999999777777
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||+|++....+ +.. .+. ...+.+++.+||.+.+|..+++
T Consensus 428 ~tv~e~~~~~~~--~~~-------------------~~~-----------------~~~~~~l~~l~l~~~~~~~~~~-- 467 (608)
T 3j16_B 428 GTVRQLFFKKIR--GQF-------------------LNP-----------------QFQTDVVKPLRIDDIIDQEVQH-- 467 (608)
T ss_dssp SBHHHHHHHHCS--STT-------------------TSH-----------------HHHHHTHHHHTSTTTSSSBSSS--
T ss_pred ccHHHHHHHHhh--ccc-------------------ccH-----------------HHHHHHHHHcCChhhhcCChhh--
Confidence 899998753211 100 000 0124578899999888877765
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|+ ..++..++|+|++|++
T Consensus 468 ---LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd-l~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 468 ---LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD-FIMATYLADKVIVFEG 543 (608)
T ss_dssp ---CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEECEE
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999876668888887654 5688899999999986
Q ss_pred --CeEEEecChhHHHH
Q 045902 422 --GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 --G~iv~~G~~~~~~~ 435 (1472)
|+++..|+++++..
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999988865
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=4.2e-28 Score=315.08 Aligned_cols=181 Identities=19% Similarity=0.282 Sum_probs=148.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCC-CCCCCCCH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND-IHSPNVTI 980 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~-~~~~~lTv 980 (1472)
++.+|+|+||+|++|++++|+|||||||||||++|+| |+| +|.+.... ..++|++|+. ..++.+||
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~---~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE---CRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT---SCEEETTCCCCCCCTTSBH
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc---eeEEEEcccccccccCCcH
Confidence 4579999999999999999999999999999999995 222 44433211 2368999874 67788999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
.|++.+ ..... ...++++++.+|+. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++.
T Consensus 514 ~e~l~~--~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~ 585 (986)
T 2iw3_A 514 LDFVFE--SGVGT-KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585 (986)
T ss_dssp HHHHHT--TCSSC-HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHH--hhcCH-HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 999975 11111 45678889999984 5666654 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EEcCC
Q 045902 1060 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI-YAGPL 1108 (1472)
Q Consensus 1060 ~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~-~~g~~ 1108 (1472)
.+.+.|++ .|+|||++||+++ .+.+.||++++|.+ |+++ +.|+.
T Consensus 586 ~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 586 WLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp HHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred HHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 99999998 5899999999975 46678999999986 6765 78875
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=1.8e-28 Score=316.57 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=132.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHH---------------------hhhcCCCCCC--ee---EEEEEEcCcc
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM---------------------DVLAGRKTGG--YI---EGSISISGYP 955 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl---------------------~~L~g~~~~~--~~---~G~i~i~G~~ 955 (1472)
+..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999997 6666654322 11 4677787765
Q ss_pred CChhcccceeEEeccCCCC-------------------CCCCCHHHHHHHHHHcCCCch------HHH------HHHHHH
Q 045902 956 KKQETFARISGYCEQNDIH-------------------SPNVTIYESLLYSAWLRLPKD------MFV------EEVMEL 1004 (1472)
Q Consensus 956 ~~~~~~~~~~gyv~Q~~~~-------------------~~~lTv~e~l~~~~~l~~~~~------~~~------~~v~~~ 1004 (1472)
.... .++.+|+++|...+ ++.+||.|++.+...+..... ... .++++.
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4321 23345666654332 356899999987432221110 011 123666
Q ss_pred cccccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 045902 1005 VEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1005 l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~ 1081 (1472)
+++.+. .++.+ ..|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|.|||+++||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 666543 34443 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhhCeEEEEe-----cCcEEEEEcCCC
Q 045902 1082 PSIDIFEAFDELFLMK-----RGGHVIYAGPLG 1109 (1472)
Q Consensus 1082 ~~~~~~~~~D~v~~l~-----~gg~v~~~g~~~ 1109 (1472)
++ ....||++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 65 456799999993 357899999864
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=2.1e-23 Score=271.34 Aligned_cols=107 Identities=25% Similarity=0.296 Sum_probs=90.5
Q ss_pred HHHHHHHhCCccc-ccccccCccCCCCChHHHHHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 045902 320 TDYVLKILGLDIC-ADIMVGNEMRRGISGGQKKRVTTGEMLVGPA---KALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395 (1472)
Q Consensus 320 ~~~il~~lgL~~~-~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 395 (1472)
...+|+.+||... .+. ....|||||||||.||++|+.+| ++|+|||||+|||+.+...+++.|+++++ .|
T Consensus 785 ~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 3457888999742 233 34569999999999999999865 79999999999999999999999999976 58
Q ss_pred cEEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHHH
Q 045902 396 VTMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYVL 434 (1472)
Q Consensus 396 ~tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~~ 434 (1472)
.|+|++.|+. +....+|+|++| ++|+|+++|+++++.
T Consensus 859 ~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 NTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 8988877765 345669999999 899999999999985
No 109
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-26 Score=283.18 Aligned_cols=195 Identities=16% Similarity=0.083 Sum_probs=147.6
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-E-EEEcCccCChhcccceeEEeccCCC---CCCCCCH
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-S-ISISGYPKKQETFARISGYCEQNDI---HSPNVTI 980 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~-i~i~G~~~~~~~~~~~~gyv~Q~~~---~~~~lTv 980 (1472)
+.++|+++++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+|+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 358999999999999999999999999999999876 4589 8 999983 2456899999984 4556899
Q ss_pred HHHHHHHHHc-CCC-chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHH--HhhCCCC----ccccC-CCC
Q 045902 981 YESLLYSAWL-RLP-KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVE--LVANPSI----IFMDE-PTS 1051 (1472)
Q Consensus 981 ~e~l~~~~~l-~~~-~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~a--L~~~p~i----l~LDE-PTs 1051 (1472)
+|++ |.... +.. ....+.++++.+|+.+..+ ...|||||||||+||++ |+.+|++ |+||| ||+
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts 271 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSIS 271 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGG
T ss_pred hhhh-cccccccCcchHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccc
Confidence 9988 64332 111 1123345556666655544 24799999999999999 9999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCcc--H---HHHHhhCe-----EEEEecCcEEEEEcCCCcc----hhHHHH
Q 045902 1052 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGHVIYAGPLGRQ----SHKLVE 1117 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~--~---~~~~~~D~-----v~~l~~gg~v~~~g~~~~~----~~~~~~ 1117 (1472)
|||+. ...+.+.++++ |.|+|+++|+.+ . ++.+.+|+ +++|.++|+++ .|+.... ...+.+
T Consensus 272 ~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~~ 346 (460)
T 2npi_A 272 QLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIRE 346 (460)
T ss_dssp GSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHHH
T ss_pred ccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHHH
Confidence 99999 65666666553 789999999976 3 34578899 99998345677 7765322 234556
Q ss_pred HHHh
Q 045902 1118 YFEA 1121 (1472)
Q Consensus 1118 ~f~~ 1121 (1472)
||..
T Consensus 347 ~f~g 350 (460)
T 2npi_A 347 YFYG 350 (460)
T ss_dssp HHHC
T ss_pred HhCC
Confidence 7754
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=1e-23 Score=271.58 Aligned_cols=106 Identities=25% Similarity=0.261 Sum_probs=92.0
Q ss_pred HHHHHHhCCcc-cccccccCccCCCCChHHHHHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 045902 321 DYVLKILGLDI-CADIMVGNEMRRGISGGQKKRVTTGEMLVGPA---KALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396 (1472)
Q Consensus 321 ~~il~~lgL~~-~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 396 (1472)
..+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999987 56666654 9999999999999999764 99999999999999999999999999976 578
Q ss_pred EEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHHH
Q 045902 397 TMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYVL 434 (1472)
Q Consensus 397 tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~~ 434 (1472)
|+|++.|+. .+ ...+|+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 988887764 34 4689999999 799999999998875
No 111
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.90 E-value=6.7e-24 Score=259.09 Aligned_cols=197 Identities=18% Similarity=0.156 Sum_probs=137.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC------------------------------------CeeE
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG------------------------------------GYIE 946 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~------------------------------------~~~~ 946 (1472)
..+++++|+.+.+| +++|+|||||||||||++|.+...+ ....
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 9999999999999999999654321 0126
Q ss_pred EEEEEcCccCChh---cc-cceeEEeccCCCCCCCCCHHHHHHHHHHcCC--------------------------C---
Q 045902 947 GSISISGYPKKQE---TF-ARISGYCEQNDIHSPNVTIYESLLYSAWLRL--------------------------P--- 993 (1472)
Q Consensus 947 G~i~i~G~~~~~~---~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--------------------------~--- 993 (1472)
|.+.+||.+.... .. ...+++++|++.+... +..+...|--+... .
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8899999987642 22 2347999998766532 44443332111000 0
Q ss_pred -----------------------------------chHHHHHHHHHccccccc----------------cc---ccCC--
Q 045902 994 -----------------------------------KDMFVEEVMELVEMKALR----------------NS---LVGL-- 1017 (1472)
Q Consensus 994 -----------------------------------~~~~~~~v~~~l~l~~~~----------------~~---~~~~-- 1017 (1472)
....+++.++.+++.... +. ....
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 001122334444332200 00 0100
Q ss_pred ----CCCCC-CCHHHHHHHHHHHHHhhCC--CCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhh
Q 045902 1018 ----PGVDG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1090 (1472)
Q Consensus 1018 ----~~~~~-LSgGqrqRl~iA~aL~~~p--~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~ 1090 (1472)
..+.. ||||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|+|||+|||++ ++.+.+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 00112 6999999999999999999 9999999999999999999999999997 589999999996 456889
Q ss_pred CeEEEE----ecCcEEEEE
Q 045902 1091 DELFLM----KRGGHVIYA 1105 (1472)
Q Consensus 1091 D~v~~l----~~gg~v~~~ 1105 (1472)
|++++| .+ |+++..
T Consensus 363 d~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 363 HHHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp SEEEEEEEEEET-TEEEEE
T ss_pred CeEEEEEEeccC-CceEEE
Confidence 999999 65 566543
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.6e-26 Score=277.29 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=144.6
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-E-EEEcCeeCCCCCCCceEEEEcCCCC---CCCCCCH
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG-R-VTYCGHELTEFVPQRTCAYISQHDL---HHGEMTV 264 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 264 (1472)
.++|+.+++|++++|+||||||||||+|+|+|...++ +| + |.+||. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999876 89 8 999982 3567899999873 5567899
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+ |+..... +. ... ..++.+++.+||++..+ ...
T Consensus 200 ~eni-~~~~~~~-~~-----------~~~------------------------~~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GA-----------TLL------------------------HNKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBS-SC-----------CSS------------------------CCBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-ccccccc-Cc-----------chH------------------------HHHHHHHHHhCCCcccc-------hhh
Confidence 9998 7543210 00 000 00122456678876655 245
Q ss_pred CChHHHHHHHHHHH--HhCCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc-----hHHhc
Q 045902 345 ISGGQKKRVTTGEM--LVGPAKA----LFMDE-ISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP-----ETYDL 412 (1472)
Q Consensus 345 LSGGqrkRvsia~a--L~~~p~i----llLDE-ptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~-----~~~~~ 412 (1472)
|||||||||++|++ |+.+|++ |+||| ||++||.. ...+.+.+++ .+.|+|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 4444444443 46788888887662 44588
Q ss_pred cCe-----EEEec-CCeEEEecChhHHH
Q 045902 413 FDD-----IILLS-EGEIVYQGPREYVL 434 (1472)
Q Consensus 413 fD~-----iilL~-~G~iv~~G~~~~~~ 434 (1472)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987653
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=2.5e-23 Score=269.02 Aligned_cols=107 Identities=25% Similarity=0.250 Sum_probs=92.2
Q ss_pred HHHHHHhCCcc-cccccccCccCCCCChHHHHHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 045902 321 DYVLKILGLDI-CADIMVGNEMRRGISGGQKKRVTTGEMLVGPA---KALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396 (1472)
Q Consensus 321 ~~il~~lgL~~-~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 396 (1472)
..+++.+||.. ..+..++ .|||||||||+||++|+.+| ++|+|||||+|||..+...+.+.|+++++ .|.
T Consensus 844 ~~~L~~lgL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 917 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAP-----TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGN 917 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGG-----GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCccc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999986 5666555 49999999999999999864 99999999999999999999999999976 588
Q ss_pred EEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHHHH
Q 045902 397 TMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYVLD 435 (1472)
Q Consensus 397 tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~~~ 435 (1472)
|+|++.|+.. + ...+|+|++| ++|++++.|+++++..
T Consensus 918 TVIvisHdl~-~-i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 918 TVIVIEHNLD-V-IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEECCCHH-H-HTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEEEcCCHH-H-HHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9888877643 4 4789999999 7999999999988754
No 114
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=2.4e-23 Score=268.79 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=92.5
Q ss_pred HHHHHHHhCCcc-cccccccCccCCCCChHHHHHHHHHHHHhCC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 045902 320 TDYVLKILGLDI-CADIMVGNEMRRGISGGQKKRVTTGEMLVGP---AKALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395 (1472)
Q Consensus 320 ~~~il~~lgL~~-~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~---p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 395 (1472)
+..+++.+||.. ..++.++ .|||||||||.||++|+.+ |++|+|||||+|||..+...+.+.|+++++ .|
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 783 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AG 783 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCCcc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 456889999987 3465554 4999999999999999996 799999999999999999999999999986 57
Q ss_pred cEEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHHH
Q 045902 396 VTMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYVL 434 (1472)
Q Consensus 396 ~tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~~ 434 (1472)
.|||++.|+. .++ ..+|+|++| ++|++++.|+++++.
T Consensus 784 ~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 784 NTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 8888877654 455 889999999 799999999998874
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.87 E-value=1.3e-22 Score=247.63 Aligned_cols=237 Identities=14% Similarity=0.095 Sum_probs=148.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----------------------------------CCce
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-----------------------------------LRVS 230 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 230 (1472)
..+++++++.+.|| +++|+|||||||||||++|.+...+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 99999999999999999997655320 0116
Q ss_pred eEEEEcCeeCCCCCC----CceEEEEcCCCCCCCCCCHHHHHHHhhhccCCC-c----hhHHHHHhhHHHHhcCCCCC--
Q 045902 231 GRVTYCGHELTEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RFELLAELSRREKDAGIKPD-- 299 (1472)
Q Consensus 231 G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~-- 299 (1472)
|++.+||.+++.... +..+++++|++.++.. +..+...|--...... . .+.......+..........
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998764221 2348999999866643 5655554422211000 0 00000000000000000000
Q ss_pred --------hhHHHHHHHHHhc-----------cccccccHHHHHHHhCCcccc----------------cc---cccC--
Q 045902 300 --------PEIDAFMKATAMS-----------GLKTSLGTDYVLKILGLDICA----------------DI---MVGN-- 339 (1472)
Q Consensus 300 --------~~~~~~~~~~~~~-----------~~~~~~~~~~il~~lgL~~~~----------------dt---~vg~-- 339 (1472)
..++...+..... ....+..++..++.++++... +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0011110000000 000111234456667665410 00 1110
Q ss_pred ----ccCCC-CChHHHHHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc
Q 045902 340 ----EMRRG-ISGGQKKRVTTGEMLVGPA--KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412 (1472)
Q Consensus 340 ----~~~~g-LSGGqrkRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~ 412 (1472)
...+. +||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|++++ .+.|+|++.|++ ++.+.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~ 361 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAAR 361 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTT
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhh
Confidence 11111 6999999999999999999 9999999999999999999999999987 378999888875 56789
Q ss_pred cCeEEEe----cCCeEEEec
Q 045902 413 FDDIILL----SEGEIVYQG 428 (1472)
Q Consensus 413 fD~iilL----~~G~iv~~G 428 (1472)
+|++++| .+|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.86 E-value=1.4e-24 Score=238.74 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=98.9
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.+|+|| ++||+++|+||||||||||+++|+|. + +.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 446799996 89999999999999999999999998 5 33566532111111123456789999976
Q ss_pred HHHH-HHHH----HcCC-CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 981 YESL-LYSA----WLRL-PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 981 ~e~l-~~~~----~l~~-~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
+||+ .+.. .+.. .....++++++. + + |||||++|||||+.+|++|+|||||+|
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~-- 134 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT-- 134 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 3444 2210 1111 111233333332 1 2 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
++..+++.|+++ ++|+||| +||+++
T Consensus 135 --~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 135 --TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp --CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred --cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 888899999998 6789999 999965
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=1.6e-21 Score=233.23 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=74.3
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1020 VDGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~------~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999888999999999965 47789999
Q ss_pred EEEecCcEEEE
Q 045902 1094 FLMKRGGHVIY 1104 (1472)
Q Consensus 1094 ~~l~~gg~v~~ 1104 (1472)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99986 67653
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=1.4e-22 Score=216.47 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=103.4
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC-CCCCHHHHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS-PNVTIYESLLY 986 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~-~~lTv~e~l~~ 986 (1472)
|||+++++||+++|+||||||||||++++.+-.. .+++ . ...|+++|+.... ..-++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1111 1 1236777764321 01112222211
Q ss_pred HHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH----------
Q 045902 987 SAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---------- 1056 (1472)
Q Consensus 987 ~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~---------- 1056 (1472)
. . +.....+.....+.. ...|+|||||++||++|+.+|++|+|||||+|||+.
T Consensus 65 ~----------~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~ 127 (171)
T 4gp7_A 65 I----------V-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVE 127 (171)
T ss_dssp H----------H-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCC
T ss_pred H----------H-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCC
Confidence 1 1 111122333333322 246999999999999999999999999999999999
Q ss_pred ------HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCe
Q 045902 1057 ------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1092 (1472)
Q Consensus 1057 ------~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~ 1092 (1472)
....+++.|+++.++|.|+|+++|+++ ..+.+++
T Consensus 128 ~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 128 EYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred HHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 568899999988777999999999854 3444443
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=3.8e-21 Score=226.57 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE--
Q 045902 1020 VDGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1093 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~----~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v-- 1093 (1472)
+..||+|||||++||++|+ .+|++|+|||||++||+..+..+.+.|+++. +|.|||+++|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 5789999999999999999999999999985 5899999999964 67789986
Q ss_pred EEEecCcEEEEEcCC
Q 045902 1094 FLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1094 ~~l~~gg~v~~~g~~ 1108 (1472)
++|.+|...+.....
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 788877666666654
No 120
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=4.5e-23 Score=247.79 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=135.6
Q ss_pred ceeeccceeEEeCCe--------------------EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhccc
Q 045902 903 LQLLQDVSGAFRPGV--------------------LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFA 962 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge--------------------~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~ 962 (1472)
+.+|++||+++++|+ ++||+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 468999999999999 9999999999999999999998763 4799999886542
Q ss_pred ceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH--HHHHHHHHHHHhh-
Q 045902 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE--QRKRLTIAVELVA- 1039 (1472)
Q Consensus 963 ~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG--qrqRl~iA~aL~~- 1039 (1472)
+ .+|++|++ .++.+|+.|++.+.. ....++++++.+++.+..... .||+| ||||+.||++|+.
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~-----~~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~la~aL~~~ 174 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS-----TNFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDIAKAISMM 174 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG-----SSCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHHHHHHHHT
T ss_pred e-eEEecccc-ccCCeeehHhhcccc-----hHHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHHHHHHHhc
Confidence 1 27899985 567889988875432 123477888888887653222 28999 9999999999999
Q ss_pred ---------CCCCccccCCCCCCCHHHHHHHHHHHHHHh-----hC----CCEEEEEecCccH-HHHHhhCeEE
Q 045902 1040 ---------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDELF 1094 (1472)
Q Consensus 1040 ---------~p~il~LDEPTsgLD~~~~~~i~~~l~~l~-----~~----g~tvi~t~H~~~~-~~~~~~D~v~ 1094 (1472)
+|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++-+++|++.
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999999999984 22 3678899998652 2555666654
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.81 E-value=3.1e-22 Score=220.12 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=97.0
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
.++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 345789996 89999999999999999999999999 775 677632111111112246799999975
Q ss_pred HHHHH-HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 264 VRETL-DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 264 V~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
+||+ .+.... + ..+. ..... ..++.+++. |
T Consensus 76 -~enl~~~~~~~------~---~~~~------~~~~~------------------~~~~~~l~~-g-------------- 106 (208)
T 3b85_A 76 -NEKIDPYLRPL------H---DALR------DMVEP------------------EVIPKLMEA-G-------------- 106 (208)
T ss_dssp -----CTTTHHH------H---HHHT------TTSCT------------------THHHHHHHT-T--------------
T ss_pred -HHHHHHHHHHH------H---HHHH------HhccH------------------HHHHHHHHh-C--------------
Confidence 6666 332100 0 0000 00000 012223332 2
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 406 (1472)
+ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ + .+.|+| +.|++.
T Consensus 107 --l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 107 --I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp --S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred --C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 3 999999999999999999999999999 888999999887 3 478888 777653
No 122
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.81 E-value=9.1e-20 Score=217.96 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=74.1
Q ss_pred cCCCCChHHHHHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 341 MRRGISGGQKKRVTTGEMLV------GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+ .|.|+|++.|++. ..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 44569999999999999999 79999999999999999999999999999875 5889999888763 467899
Q ss_pred eEEEecCCeEEE
Q 045902 415 DIILLSEGEIVY 426 (1472)
Q Consensus 415 ~iilL~~G~iv~ 426 (1472)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999974
No 123
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=8.7e-20 Score=214.92 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=71.0
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE-
Q 045902 342 RRGISGGQKKRVTTGEMLV----GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI- 416 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i- 416 (1472)
+..|||||||||+||++|+ .+|++++|||||++||+.+...+.+.|+++. .+.++|++.|.+ ++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEE
Confidence 3459999999999999996 7899999999999999999999999999984 367888887774 578899987
Q ss_pred -EEecCCeEE-EecChhH
Q 045902 417 -ILLSEGEIV-YQGPREY 432 (1472)
Q Consensus 417 -ilL~~G~iv-~~G~~~~ 432 (1472)
++|.+|... .....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 788888653 3344443
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=1.2e-20 Score=202.64 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=99.0
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~ 994 (1472)
.++|+||||||||||+++|+|... |.++|.+... ...++.+||++|+. ++.+++ + +.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~~~ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFFTS 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcCCc
Confidence 589999999999999999999753 2233332211 12346789999975 222222 0 0000000
Q ss_pred hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHH-----HhhCCCCccccC--CCCCCCHHHHHHHHHHHHH
Q 045902 995 DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMRTVRN 1067 (1472)
Q Consensus 995 ~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~a-----L~~~p~il~LDE--PTsgLD~~~~~~i~~~l~~ 1067 (1472)
....+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....+.+.+++
T Consensus 67 -------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 67 -------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0111221 34699999999999996 999999999999 9999999999998888865
Q ss_pred HhhCCCEEEEEec---CccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1068 TVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1068 l~~~g~tvi~t~H---~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
.+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 129 ---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 129 ---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp ---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred ---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 4778999986 433 45566776 3466665443
No 125
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=1.5e-22 Score=223.15 Aligned_cols=177 Identities=13% Similarity=0.067 Sum_probs=113.3
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
...+++| .+|++||+++|+||||||||||+++|+|..+ .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3567888 6999999999999999999999999999764 233333333332221 2245689999998777777877
Q ss_pred HHHHHH----H--Hc-CCCchHH---HHHH------HHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcc
Q 045902 982 ESLLYS----A--WL-RLPKDMF---VEEV------MELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1045 (1472)
Q Consensus 982 e~l~~~----~--~l-~~~~~~~---~~~v------~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~ 1045 (1472)
|++... . .+ ..+.... +++. ++.+++.++++... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 765321 1 11 1111111 2222 23333333333332 2466 8899999999
Q ss_pred ccCCCCCC----CHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1046 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1046 LDEPTsgL----D~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
|||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++.+.+|++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999974 5899999999986 5788999999996544
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.79 E-value=1.2e-21 Score=235.40 Aligned_cols=172 Identities=14% Similarity=0.150 Sum_probs=130.5
Q ss_pred cceeeeceeeEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC
Q 045902 185 KLEILHDVSGIVKPSR--------------------MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge--------------------~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 244 (1472)
.+.+|+|+|+.+++|+ +++|+||||||||||+|+|+|..+++ +|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---
Confidence 3568999999999999 99999999999999999999999887 899999987653
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHH
Q 045902 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVL 324 (1472)
Q Consensus 245 ~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 324 (1472)
+ .+|++|++ .++.+|+.||+.+... +...+..+
T Consensus 109 -~--~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L 141 (413)
T 1tq4_A 109 -M--ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYL 141 (413)
T ss_dssp -C--CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHH
T ss_pred -e--eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHH
Confidence 1 27899985 5778899888744210 01134567
Q ss_pred HHhCCcccccccccCccCCCCChH--HHHHHHHHHHHhC----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 325 KILGLDICADIMVGNEMRRGISGG--QKKRVTTGEMLVG----------PAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 325 ~~lgL~~~~dt~vg~~~~~gLSGG--qrkRvsia~aL~~----------~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
+.++|.+.. ..+ . +||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 142 ~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 142 EKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 778876542 221 2 9999 9999999999999 9999999999999999999999999998852
Q ss_pred ----hC----CcEEEEEEecCcc-hHHhccCeE
Q 045902 393 ----IT----DVTMIISLLQPAP-ETYDLFDDI 416 (1472)
Q Consensus 393 ----~~----~~tvii~~~q~~~-~~~~~fD~i 416 (1472)
.. ..+++++.|.... .+-+++|+|
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 22 2456666654432 244555555
No 127
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.78 E-value=4.2e-22 Score=230.09 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=115.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+|. +|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999987 48873 46778776665 4888
Q ss_pred H-HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 266 E-TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 266 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
| |+.|.... +. . ....++.+ |++..| +..
T Consensus 171 ~~ni~~~~~~-------------~~-----------~------------------~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------A------------------CWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------H------------------HHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-------------cH-----------H------------------HHHHHHHH-hHccCC-------ccC
Confidence 7 77653110 00 0 01122222 333333 346
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||| |||++.+|+||+ ||+||+.++..|.. + +| ..++.+.+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999988752 1 12 22345689999 9999999
Q ss_pred EEecChhHHHHHHHh
Q 045902 425 VYQGPREYVLDFFES 439 (1472)
Q Consensus 425 v~~G~~~~~~~~F~~ 439 (1472)
++.|+++++..+|..
T Consensus 256 v~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 256 PFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 999999998666654
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.77 E-value=6.5e-20 Score=195.87 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEecC
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSS----------------TTFQIVRFMRQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~----------------t~~~i~~~L~~l~~~~~~tvii~~~q~ 405 (1472)
.||||||||+||+++..+|++++|||||++||+. ...++.+.|+++.+. |.|+|++.|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 568889999888765 88999888764
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.77 E-value=3.2e-20 Score=199.33 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCch
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 280 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 280 (1472)
.++|+||||||||||+++|+|.+. +.+.|... .+......++.++|++|+. |+.+++ ++ +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~----- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF----- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ETT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hhc-----
Confidence 579999999999999999999874 22334221 1111101245689999964 222222 10 000
Q ss_pred hHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHH--
Q 045902 281 FELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM-- 358 (1472)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~a-- 358 (1472)
..+ +...+ ..+..||||||||++||++
T Consensus 64 ---------------~~~-------------------------------~~~~~-----~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 64 ---------------FTS-------------------------------KKLVG-----SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp ---------------CCC-------------------------------SSEET-----TEEECHHHHHHHHHHHHHHHH
T ss_pred ---------------CCc-------------------------------ccccc-----ccccCcCHHHHHHHHHHhhcc
Confidence 000 01112 2334599999999999996
Q ss_pred ---HhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe--cCcchHHhccCeEEEecCCeEEE
Q 045902 359 ---LVGPAKALFMDE--ISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL--QPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 359 ---L~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~--q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
++.+|++++||| ||++||+.....+.+.+++ .+.|+|++.| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999888865 4667888887 666777778887 5567665
No 130
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=5.6e-22 Score=220.40 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=99.0
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~~~~~~l 978 (1472)
..-|+||||++++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 346999999999999999999999999999999999762 67888 665321 12345679999987655433
Q ss_pred CH-HHHHH---HHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHH-----HHHHhhCCCCccccCC
Q 045902 979 TI-YESLL---YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTI-----AVELVANPSIIFMDEP 1049 (1472)
Q Consensus 979 Tv-~e~l~---~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~i-----A~aL~~~p~il~LDEP 1049 (1472)
+. .+++. +...........++++++..+.. +.+ ..||||||||++| +++++.+|++++||||
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred hhccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 21 11111 11111111223456666654432 111 2589999999999 8999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 045902 1050 TSGLDARAAAIVMRTVRNTV 1069 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~ 1069 (1472)
|+++|..+...+.+.++++.
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 99999999999988888764
No 131
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=2.6e-20 Score=213.16 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc-hH
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-DM 996 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-~~ 996 (1472)
.+||+||||||||||+|+|+|... +.+|+|.++|.+......++.++|++|++.+++.+||.|++.|+....... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999766 458999999988755555678999999999999999999998875433211 12
Q ss_pred HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 045902 997 FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076 (1472)
Q Consensus 997 ~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi 1076 (1472)
.+.+.++ ..+.+... ..||||||||++|||+++. ++||||||+|||+.. .+.++++.+. .+||
T Consensus 82 ~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI 144 (270)
T 3sop_A 82 PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNII 144 (270)
T ss_dssp HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEE
T ss_pred HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEE
Confidence 2233222 34444443 3699999999999999876 999999999999987 4455666555 8999
Q ss_pred EEecCc
Q 045902 1077 CTIHQP 1082 (1472)
Q Consensus 1077 ~t~H~~ 1082 (1472)
+++|..
T Consensus 145 ~Vi~K~ 150 (270)
T 3sop_A 145 PVIAKA 150 (270)
T ss_dssp EEETTG
T ss_pred EEEecc
Confidence 999964
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.74 E-value=6.7e-20 Score=212.91 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=118.5
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeEEeccCCC-CC
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TF--ARISGYCEQNDI-HS 975 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~--~~~~gyv~Q~~~-~~ 975 (1472)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997652 369999999876421 22 235899999988 88
Q ss_pred CCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCC
Q 045902 976 PNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGL 1053 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgL 1053 (1472)
|.+|++|++.+...... + ..+++.+|+.+..+... ..|| |||++||++|+.+|+ +|+|| ||+||
T Consensus 168 ~~~~v~e~l~~~~~~~~--d---~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY--D---VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHHHHTTC--S---EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHHHHcCC--c---chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 88999999987542211 1 12445566665555443 3588 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHh-hCCCEEEEEecC
Q 045902 1054 DARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1081 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~-~~g~tvi~t~H~ 1081 (1472)
|+... ++++. +.|.|+|++||.
T Consensus 234 D~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 234 NMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp GGHHH------HHHHHHHTCCCEEEEECC
T ss_pred CHHHH------HHHHHHhcCCCEEEEeCC
Confidence 98754 24454 348999999994
No 133
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=2.4e-19 Score=208.34 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=129.9
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---------CCceEEEEcCCCC-C
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---------PQRTCAYISQHDL-H 258 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 258 (1472)
++++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999998876 799999998865421 1235899999988 8
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+|.+||+|++.++.. .+. + ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~-~~~---------------------d---------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EGY---------------------D---------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHH-TTC---------------------S---------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHH-cCC---------------------c---------------------chHHhcCCCCcchhHHHH
Confidence 889999999987421 000 0 012345677666665554
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------ch
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAK--ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA--------PE 408 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~--------~~ 408 (1472)
. || |||++||++++.+|+ +|+|| ||+|||+.+. ++++.+..+.|+++..|-+. ..
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 3 88 999999999999999 99999 9999999854 24444445788888776322 12
Q ss_pred HHhccCeEEEecCCeE
Q 045902 409 TYDLFDDIILLSEGEI 424 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~i 424 (1472)
.....+.|..+..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 2345667888888864
No 134
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=3.5e-19 Score=209.80 Aligned_cols=131 Identities=20% Similarity=0.155 Sum_probs=105.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
.+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|.+... ...++.++++.
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe-------------
Confidence 389999999999999999999999999999999998764 48999999864211 11222233332
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
+ |||+||++||++|..+|++|+|||||+ ..++
T Consensus 224 ---------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~ 255 (330)
T 2pt7_A 224 ---------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAY 255 (330)
T ss_dssp ---------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHH
T ss_pred ---------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHH
Confidence 1 799999999999999999999999998 2356
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 256 ~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 256 DFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp HHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 777777543458999999987 67789999999865
No 135
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.72 E-value=1.7e-21 Score=224.96 Aligned_cols=158 Identities=12% Similarity=0.129 Sum_probs=113.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
..+|+|||++|++|+++||+||||||||||+++|+|.. +|+|. +|++|++.++. .|++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~---------------~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL---------------SFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE---------------CGGGTTSGGGG-GGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE---------------EEecCcccccc-ccHHH
Confidence 45899999999999999999999999999999999976 46663 45677666554 36665
Q ss_pred -HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 983 -SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 983 -~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
|+.+.. .....+.+.++.+ +.+..| ...|||||||| ||||+.+|+||+ ||+||+.++..+
T Consensus 172 ~ni~~~~----~~~~~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 172 TRAALVD----DATHACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp CSCEEEE----EECHHHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred HhhccCc----cccHHHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 654421 0112233444442 222122 24799999999 999999999999 999999998887
Q ss_pred HHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhC
Q 045902 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAV 1122 (1472)
Q Consensus 1062 ~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~ 1122 (1472)
.. .+|+++ .++.+|++ +|++ |++++.|+. +++..+|..+
T Consensus 233 ~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 233 LY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp GG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH----HHHHHHHHHH
Confidence 52 188876 45789999 8875 789988875 3455666654
No 136
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=5.1e-20 Score=224.20 Aligned_cols=175 Identities=16% Similarity=0.120 Sum_probs=137.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc---cCCh--------hcccceeEEecc
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY---PKKQ--------ETFARISGYCEQ 970 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~---~~~~--------~~~~~~~gyv~Q 970 (1472)
+.++|+++ +.+.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 46799999 99999999999999999999999999998764 4899999997 3321 235677899999
Q ss_pred C-CCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC
Q 045902 971 N-DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1049 (1472)
Q Consensus 971 ~-~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP 1049 (1472)
+ +..++.+|+.+++.+.+....... -....+.|. ...||+|| ||++|| +.+|++
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~~---------~~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~------ 275 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDRG---------QHVLLIMDS------LTRYAMAQ-REIALA---IGEPPA------ 275 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTT---------CEEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCC---------CCHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc------
Confidence 5 556678899999887653211000 001111122 24699999 999999 888888
Q ss_pred CCCCCHHHHHHHHHHHHHHhh---C-CC-----EEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1050 TSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+|||+.+...+.+.++++.+ + |. ||++++||.+ ...+|++++|.+ |+++..|++
T Consensus 276 t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999876 3 64 9999999987 467899999975 899988754
No 137
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=4.4e-19 Score=209.71 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=119.3
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeEEeccCCC-CCC
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TF--ARISGYCEQNDI-HSP 976 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 976 (1472)
+++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999997653 369999999876421 12 345899999988 888
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLD 1054 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgLD 1054 (1472)
..|++|++.+...... + ..+++.+|+.+..+... ..|| |||++||++|+.+|+ +|+|| ||+|||
T Consensus 226 ~~tv~e~l~~~~~~~~--d---~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD 291 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGY--D---VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLN 291 (359)
T ss_dssp HHHHHHHHHHHHHTTC--S---EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGG
T ss_pred hhhHHHHHHHHHhCCC--H---HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCC
Confidence 8999999987643211 1 12445566665555443 3588 999999999999999 99999 999999
Q ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEecC
Q 045902 1055 ARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1081 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~-~g~tvi~t~H~ 1081 (1472)
+.... +++.+ .|.|+|++||.
T Consensus 292 ~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 292 MLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp GHHHH------HHHHHHTCCCEEEEESC
T ss_pred HHHHH------HHHHHhcCCeEEEEecC
Confidence 87653 34443 48999999994
No 138
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.71 E-value=3.8e-19 Score=203.50 Aligned_cols=146 Identities=15% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCch
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 280 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 280 (1472)
.++|+||||||||||+|+|+|...++ +|+|.++|+++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999998887 89999999987654445789999999999999999999988653321100
Q ss_pred hHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHh
Q 045902 281 FELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360 (1472)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~ 360 (1472)
...+..+.. ....+...+ .|||||||||++||+++
T Consensus 80 ------------------~~~i~~~~~----------------------~~~~~~~~~-----~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ------------------WEPIEKYIN----------------------EQYEKFLKE-----EVNIARKKRIPDTRVHC 114 (270)
T ss_dssp ------------------SHHHHHHHH----------------------HHHHHHHHH-----HSCTTCCSSCCCCSCCE
T ss_pred ------------------HHHHHHHHH----------------------HHHHhhhHH-----hcCcccchhhhhheeee
Confidence 001111110 111222222 49999999999999987
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
. ++++|||+.|||+.. .+.++.+.+. .++|+.++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 5 999999999999987 4455555442 677776653
No 139
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=5.8e-17 Score=192.15 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=68.7
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1020 VDGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1020 ~~~LSgGqrq------Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.+.|.|||++||++. +.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677788888899999999999999999999999999999877899999999954 67889999
Q ss_pred EEEe
Q 045902 1094 FLMK 1097 (1472)
Q Consensus 1094 ~~l~ 1097 (1472)
+.|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 140
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.70 E-value=1.9e-17 Score=196.14 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=73.5
Q ss_pred CccCC-CCChHHHHHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch
Q 045902 339 NEMRR-GISGGQKKRVTTGEMLV---------GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE 408 (1472)
Q Consensus 339 ~~~~~-gLSGGqrkRvsia~aL~---------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 408 (1472)
+...+ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++. .|+|++.| +. +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c
Confidence 33455 69999999999999999 8999999999999999999999999998752 46666555 43 3
Q ss_pred HHhccCeEEEecCCeEEEecChhHH
Q 045902 409 TYDLFDDIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~iv~~G~~~~~ 433 (1472)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999998765
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.68 E-value=2.6e-18 Score=203.08 Aligned_cols=174 Identities=15% Similarity=0.191 Sum_probs=130.1
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---------CCceEEEEcCCCC-CC
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---------PQRTCAYISQHDL-HH 259 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 259 (1472)
+++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999998876 799999998865421 1235899999988 88
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
|.+||+|++.++... +. + ..+++.+|+.+..+..+.
T Consensus 225 p~~tv~e~l~~~~~~-~~---------------------d---------------------~~lldt~Gl~~~~~~~~~- 260 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY---------------------D---------------------VVLCDTSGRLHTNYSLME- 260 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC---------------------S---------------------EEEEECCCCSSCCHHHHH-
T ss_pred hhhhHHHHHHHHHhC-CC---------------------H---------------------HHHHHhcCCChhhhhHHH-
Confidence 899999999875210 00 0 012345666666555554
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------chH
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAK--ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA--------PET 409 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~--------~~~ 409 (1472)
.|| |||++||++++.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+..|-+. ...
T Consensus 261 ----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 261 ----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp ----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred ----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 388 999999999999999 99999 99999998653 3444445788888776321 122
Q ss_pred HhccCeEEEecCCeE
Q 045902 410 YDLFDDIILLSEGEI 424 (1472)
Q Consensus 410 ~~~fD~iilL~~G~i 424 (1472)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 345667777777764
No 142
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.68 E-value=7.1e-18 Score=196.24 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=115.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-EEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-SISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
..+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.........+.+.++.+... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 4589999999999999999999999999999999996542 235 56554433333333333333333321 1223
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHH-HHHHHHHHHHhhCCCCccccCCCC---C---CC
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS---G---LD 1054 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq-rqRl~iA~aL~~~p~il~LDEPTs---g---LD 1054 (1472)
+++.....-.......++++++...+ .+.+. ...+|.+| +||+. |+++..+|++|++||||+ + +|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~~l-~i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d 167 (296)
T 1cr0_A 96 DSLKREIIENGKFDQWFDELFGNDTF-HLYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESD 167 (296)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSSSCE-EEECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----------
T ss_pred cccccCCCCHHHHHHHHHHHhccCCE-EEECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCC
Confidence 33432210000000112222221111 11111 12588998 66666 999999999999999999 5 56
Q ss_pred H-HHHHHHHHHHHHHhhC-CCEEEEEecCcc-H--------------------HHHHhhCeEEEEecC
Q 045902 1055 A-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1055 ~-~~~~~i~~~l~~l~~~-g~tvi~t~H~~~-~--------------------~~~~~~D~v~~l~~g 1099 (1472)
. .....+++.|++++++ |+|||+++|+.. . .+.+.+|++++|.+|
T Consensus 168 ~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 168 ERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 6678899999999765 999999999952 1 466789999999874
No 143
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.67 E-value=5.1e-17 Score=192.46 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCe
Q 045902 1022 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1092 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~---------~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~ 1092 (1472)
.||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. +. .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~----~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP----GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 32 7899
Q ss_pred EEEEecCcEEEEEcCCC
Q 045902 1093 LFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1093 v~~l~~gg~v~~~g~~~ 1109 (1472)
+++|.+ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 7898888764
No 144
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.67 E-value=2e-20 Score=207.95 Aligned_cols=174 Identities=14% Similarity=0.083 Sum_probs=105.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ + |+|.+ |.+.....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 77888 766543322 3467899997655543
Q ss_pred CC-HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 262 MT-VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 262 lT-V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
++ +.+++.+. ...+ ..+.. +..+ ++.+++... ...+.
T Consensus 83 ~~~~~~~l~~~-~~~~--~~~g~--------------~~~~------------------i~~~l~~~~-----~~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYAN--NFYGT--------------LKSE------------------YDKAKEQNK-----ICLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EETT--EEEEE--------------EHHH------------------HHHHHHTTC-----EEEEE--
T ss_pred hhhccchhhhh-hccc--ccCCC--------------cHHH------------------HHHHHhCCC-----cEEEE--
Confidence 32 11111110 0000 00000 0000 112222211 11111
Q ss_pred cCCCCChHHHHHHHH-----HHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 341 MRRGISGGQKKRVTT-----GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsi-----a~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++.... .+ +.| ...+|.
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~ 187 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNL 187 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSE
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCE
Confidence 3599999999999 89999999999999999999999999999999876543 22 111 246788
Q ss_pred EEEecC
Q 045902 416 IILLSE 421 (1472)
Q Consensus 416 iilL~~ 421 (1472)
|+++++
T Consensus 188 iiv~~~ 193 (218)
T 1z6g_A 188 SIINDD 193 (218)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 877754
No 145
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.66 E-value=5.7e-19 Score=214.95 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=137.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCe---eCCCCC--------CCceEEEEc
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH---ELTEFV--------PQRTCAYIS 253 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~~~--------~~~~~~yv~ 253 (1472)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++. .++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35689999 999999999999999999999999999999887 899999998 454321 246799999
Q ss_pred CC-CCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc
Q 045902 254 QH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC 332 (1472)
Q Consensus 254 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 332 (1472)
|+ +..++.+||.+|+.+.++... .. +......
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~--------------~~--------------------~~~v~~~------------- 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFR--------------DR--------------------GQHVLLI------------- 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHH--------------TT--------------------TCEEEEE-------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH--------------hC--------------------CCCHHHH-------------
Confidence 95 556778899999987543210 00 0000000
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH---hCCc-----EEEEEEec
Q 045902 333 ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH---ITDV-----TMIISLLQ 404 (1472)
Q Consensus 333 ~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~---~~~~-----tvii~~~q 404 (1472)
.| ....+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+ ..|. |+++..|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 01 123499999 999999 888887 999999999999999998865 2353 66666665
Q ss_pred CcchHHhccCeEEEecCCeEEEecChhHH
Q 045902 405 PAPETYDLFDDIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 405 ~~~~~~~~fD~iilL~~G~iv~~G~~~~~ 433 (1472)
.. ...+|++++|.+|+++..|+..++
T Consensus 317 l~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 54 467899999999999999987665
No 146
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.66 E-value=1.6e-16 Score=198.87 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=70.5
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1020 VDGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1020 ~~~L-SgGqrqRl~iA~aL~~~p--~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3457 999999999999999999 99999999999999999999999999987 899999999965 55679999999
Q ss_pred ecC
Q 045902 1097 KRG 1099 (1472)
Q Consensus 1097 ~~g 1099 (1472)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 653
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.65 E-value=2.2e-17 Score=194.46 Aligned_cols=133 Identities=15% Similarity=0.196 Sum_probs=103.4
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
+++++|+.+++|++++|+|||||||||||++|+|.++++ +|.|+++|.+ +... ++ +
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~-------~~---~--------- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVF-------KH---H--------- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCC-------SS---C---------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--cccc-------cc---c---------
Confidence 789999999999999999999999999999999999987 8999998853 1100 00 0
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+ . .. + .+ .| |
T Consensus 216 -----~-~-----------------------------------------~i---------~-------~~-----~g--g 225 (330)
T 2pt7_A 216 -----K-N-----------------------------------------YT---------Q-------LF-----FG--G 225 (330)
T ss_dssp -----S-S-----------------------------------------EE---------E-------EE-----CB--T
T ss_pred -----h-h-----------------------------------------EE---------E-------EE-----eC--C
Confidence 0 0 00 0 00 01 8
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
||+||++||+||..+|+++++||||+. ++.+.|+.+.. .+.|++++.|.++ +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35667776643 3457888888765 7788999999988863
No 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.65 E-value=1.1e-19 Score=200.39 Aligned_cols=190 Identities=11% Similarity=0.073 Sum_probs=111.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
..+++| ..+++||+++|+||||||||||+++|+|.++ .+ .+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i--~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NL--HFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST-TC--EECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ce--EEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 467888 6899999999999999999999999999985 22 3332232322211 1235689999998888888888
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
|++.+.....+....+.. .+. ++++..+ . +...-. .++.+|+.+.++..+ +.|
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~----------~~~~~~~--~--~~~~~~----~l~~~gl~~~~~~~~-----~~l 135 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQ----------PVRAAAA--T--GVPVLI----EVDLAGARAIKKTMP-----EAV 135 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHH----------HHHHHHH--H--TCCEEE----ECCHHHHHHHHHHCT-----TSE
T ss_pred CCceeehhhcCchhhcCC----cHH----------HHHHHHH--c--CCeEEE----EeCHHHHHHHHHhcC-----CcE
Confidence 876432211110000000 000 0000000 0 000000 022233333333333 236
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGL----DSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgL----Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+.|++++.| ...++..++|+|++|.
T Consensus 136 S-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH-dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 136 T-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR-RLESACAELVSLLVGT 202 (207)
T ss_dssp E-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS-SHHHHHHHHHHHHC--
T ss_pred E-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC-CHHHHHHHHHHHHHhc
Confidence 6 889999999999999998 7789999999999997666788887765 5678999999999984
No 149
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.64 E-value=5.1e-18 Score=198.02 Aligned_cols=128 Identities=9% Similarity=-0.014 Sum_probs=95.1
Q ss_pred ceee-EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 191 DVSG-IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 191 ~vs~-~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|++. .+++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999998764 332 358999999999988 9999985
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
+... .+.... .+.+ ....+++.++ ....++.+. .+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d~~---------------~~~~~L~~l~-~~~~~~~~~-----~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YNRR---------------ALMRFVTSVK-SGSDYACAP-----VYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BCHH---------------HHHHHHHHHH-TTCSCEEEE-----EEETTT
T ss_pred HHHh-cCCChH-------------------HHHH---------------HHHHHHHHhC-CCcccCCcc-----cCChhh
Confidence 4211 111000 0000 1233566666 444445444 499999
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCH
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDS 377 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs 377 (1472)
|||+++|++++.+|+|+|+|||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999997
No 150
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.63 E-value=3.6e-18 Score=214.27 Aligned_cols=167 Identities=20% Similarity=0.136 Sum_probs=115.7
Q ss_pred cceeecccee-EEeCCeEEEEEcCCCCChhHHHhh--hcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCC
Q 045902 902 RLQLLQDVSG-AFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 902 ~~~iL~~vs~-~i~~Ge~~al~G~nGaGKTTLl~~--L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~ 976 (1472)
+..+|++||+ .+++|++++|+||||||||||+++ ++|..++ .+|.|.++|.+... ...++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3568999999 999999999999999999999999 6787653 37999999987432 123456799998754211
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCCCccccCCCC----
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-ANPSIIFMDEPTS---- 1051 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-~~p~il~LDEPTs---- 1051 (1472)
. +.+ ..........++++.+++.++ .-.+..+|- .+|++++|||||+
T Consensus 102 ~------l~~---~~~~~~~~~~~~l~~~~l~~~-------------------~~~~~~~LS~g~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 102 K------LFI---LDASPDPEGQEVVGGFDLSAL-------------------IERINYAIQKYRARRVSIDSVTSVFQQ 153 (525)
T ss_dssp S------EEE---EECCCCSSCCSCCSSHHHHHH-------------------HHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred c------EEE---EecCcccchhhhhcccCHHHH-------------------HHHHHHHHHHcCCCEEEECCHHHHHHh
Confidence 1 100 000000000111222222222 223333332 4688999999998
Q ss_pred -CCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHH--------HHHhhCeEEEEec
Q 045902 1052 -GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID--------IFEAFDELFLMKR 1098 (1472)
Q Consensus 1052 -gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~--------~~~~~D~v~~l~~ 1098 (1472)
+||+..+..+.++++++++.|+|||+++|+++.. ....+|++++|.+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 5699999999999999988899999999998631 2345999999986
No 151
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.62 E-value=2.4e-15 Score=178.26 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=68.6
Q ss_pred cCCCCChHHHH------HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 341 MRRGISGGQKK------RVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 341 ~~~gLSGGqrk------Rvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
....||||||| |+++|++++.+|++|+|||||+|||+.++..+.+.|+++.. .+.|++++.|+ +++.+.+|
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCC
Confidence 34569999999 67788899999999999999999999999999999999865 46788888876 46789999
Q ss_pred eEEEec--CCe
Q 045902 415 DIILLS--EGE 423 (1472)
Q Consensus 415 ~iilL~--~G~ 423 (1472)
++++|. +|.
T Consensus 322 ~~~~l~~~~g~ 332 (339)
T 3qkt_A 322 HVIRISLENGS 332 (339)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEecCCc
Confidence 999984 454
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=1.4e-17 Score=188.26 Aligned_cols=151 Identities=10% Similarity=0.009 Sum_probs=97.9
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3467999999999999999999999999999999999854 222222 2356789999985 6678999
Q ss_pred HHHHHHHHHcCC---CchHHHHHHHHHcc-cccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 981 YESLLYSAWLRL---PKDMFVEEVMELVE-MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~---~~~~~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
.|++.+...... +.....+.+.+.++ +.+..+.. ...||+||+||+.+ ++++.+|++++||||....|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 999876543221 11111233334433 33333332 24699999999988 5788899999999999888864
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecC
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~ 1081 (1472)
++++ .+.+|++++|+
T Consensus 150 --------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 150 --------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp --------HHTT--CSEEEEEECCH
T ss_pred --------HHHh--cCeEEEEECCH
Confidence 2233 27899999996
No 153
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.62 E-value=7e-17 Score=190.90 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=123.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----------hcccceeEEeccC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----------ETFARISGYCEQN 971 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----------~~~~~~~gyv~Q~ 971 (1472)
+.++|+++ +.|.+||+++|+||||||||||+++|+|...+ ..|.|.+.|.+... ..+.+.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 45799999 99999999999999999999999999998764 47999998864211 1234557778775
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 972 DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 972 ~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+. ...+.+.-... .....+.....+ .+...-...+..||+|| ||+++| +.+|++ |+
T Consensus 135 ~~-----~~~~r~~~~~~-----~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~ 190 (347)
T 2obl_A 135 DR-----PALERMKAAFT-----ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RG 190 (347)
T ss_dssp TS-----CHHHHHHHHHH-----HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BT
T ss_pred CC-----CHHHHHHHHHH-----HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------cc
Confidence 42 22222211000 000011110000 00000001134699999 899999 688887 99
Q ss_pred CCCHHHHHHHHHHHHHHhh--CCC-----EEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1052 GLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~--~g~-----tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+.....+.++++++.+ .|. ||++++||.+ ...+|+++++.+ |+++..+++
T Consensus 191 Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 191 GFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp TBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 9999999999999999874 477 9999999987 357899999985 899988764
No 154
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.61 E-value=3.4e-17 Score=185.03 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=106.9
Q ss_pred eccce-eEEeCCeEEEEEcCCCCChhHHHhhhc--CCCCCCeeEEEEEEcCccCChh--cccceeEEeccCCCCCCCCCH
Q 045902 906 LQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLA--GRKTGGYIEGSISISGYPKKQE--TFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 906 L~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~--g~~~~~~~~G~i~i~G~~~~~~--~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
|+++- +.|++|++++|+||||||||||+++|+ |.... ..|.+.+++...... ...+.+||.+|+....+.+++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 44442 489999999999999999999999999 55221 246677776543221 122345777665444444444
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC-----H
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-----A 1055 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD-----~ 1055 (1472)
.+......... ..+.. .. ....+.++..+...+..-..+|+++++||||++|| +
T Consensus 97 ~~~~~~~~~~~------~~~~~----------~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~ 155 (251)
T 2ehv_A 97 VDGVSSVVGLP------SEEKF----------VL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEER 155 (251)
T ss_dssp EC----------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGG
T ss_pred EEccccccccc------cccce----------ec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHH
Confidence 44322110000 00000 00 01234455555555555568999999999999998 6
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCccHHH---------HHhh-CeEEEEec
Q 045902 1056 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELFLMKR 1098 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~---------~~~~-D~v~~l~~ 1098 (1472)
..+..+.++++.+++.|+|||+++|+++. . ...| |++++|++
T Consensus 156 ~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 156 KIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 77777999999998889999999999763 3 4677 99999963
No 155
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.61 E-value=2.8e-18 Score=200.17 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=93.5
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~ 992 (1472)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++|++.+......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhcCC
Confidence 8999999999999999999999999976531 121 357999999998888 99999864221112
Q ss_pred Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 993 PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 993 ~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
+.. +...+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 150 ~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 150 PESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp GGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 221 34566777776 44433332 36999999999999999999999999999999986
No 156
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.60 E-value=1.2e-15 Score=158.22 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1020 VDGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA------~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999886 899999999999999999999999999999999977799999999997 356789999
Q ss_pred EEEe
Q 045902 1094 FLMK 1097 (1472)
Q Consensus 1094 ~~l~ 1097 (1472)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.60 E-value=1.1e-16 Score=186.11 Aligned_cols=187 Identities=12% Similarity=0.074 Sum_probs=112.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-EEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG-RVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
..++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+. .++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRV----RLR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTC----CGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chh
Confidence 346899999999999999999999999999999999987654 46 5655432211000000111111110 001
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+.+++... .+.. .+..+ ..+.+++..++. +. +...
T Consensus 94 ~~~~l~~~--------------~~~~----------~~~~~--------------~~~~~l~~~~l~------i~-~~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------IIEN----------GKFDQ--------------WFDELFGNDTFH------LY-DSFA 128 (296)
T ss_dssp GCHHHHHH--------------HHHH----------THHHH--------------HHHHHHSSSCEE------EE-CCCC
T ss_pred hccccccC--------------CCCH----------HHHHH--------------HHHHHhccCCEE------EE-CCCC
Confidence 11111100 0000 00000 112222211221 10 1123
Q ss_pred CCChHH-HHHHHHHHHHhCCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcEEEEEEecC-cc-------
Q 045902 344 GISGGQ-KKRVTTGEMLVGPAKALFMDEIST---G---LDS-STTFQIVRFMRQMVHITDVTMIISLLQP-AP------- 407 (1472)
Q Consensus 344 gLSGGq-rkRvsia~aL~~~p~illLDEpts---g---LDs-~t~~~i~~~L~~l~~~~~~tvii~~~q~-~~------- 407 (1472)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.|+|++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 488998 66776 999999999999999999 5 555 6678899999999887789999888775 13
Q ss_pred -------------hHHhccCeEEEecCCeE
Q 045902 408 -------------ETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 408 -------------~~~~~fD~iilL~~G~i 424 (1472)
.+.+.+|+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
No 158
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.60 E-value=1.1e-15 Score=191.31 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=68.8
Q ss_pred CCCC-ChHHHHHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 342 RRGI-SGGQKKRVTTGEMLVGPA--KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 342 ~~gL-SGGqrkRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
...| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ +.|||++.|+| ++...+|++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4457 999999999999999999 99999999999999999999999999975 68899888875 45567999999
Q ss_pred ecCC
Q 045902 419 LSEG 422 (1472)
Q Consensus 419 L~~G 422 (1472)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.59 E-value=2.3e-16 Score=179.59 Aligned_cols=132 Identities=18% Similarity=0.265 Sum_probs=97.6
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCee-EEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
.+|+++| +++|++++|+||||||||||+++|+|..+ +. +|+|.++|.++. |++|+...+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 4899999 89999999999999999999999999765 33 799999987642 333321100
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
. +. ..+|.. ...+ |++||++|..+|++|++|||| |+.+...+
T Consensus 75 -------v--~q------------------~~~gl~-~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~- 116 (261)
T 2eyu_A 75 -------V--NQ------------------REVGED-TKSF------ADALRAALREDPDVIFVGEMR---DLETVETA- 116 (261)
T ss_dssp -------E--EE------------------EEBTTT-BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH-
T ss_pred -------e--eH------------------HHhCCC-HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH-
Confidence 0 00 011110 0123 899999999999999999999 98886544
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1098 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~ 1098 (1472)
++. ++.|.+|++++|+.+ ..+.+|+++.|..
T Consensus 117 --l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 --LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp --HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred --HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 333 356999999999976 5678899988753
No 160
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.59 E-value=1.2e-15 Score=199.76 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=106.6
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhc--------CCCCCCeeEEEEEEcCccCChhcccceeEEeccCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA--------GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI 973 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~--------g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~ 973 (1472)
...+++|+++.+++|++++|+|||||||||||++++ |..-+ ..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHH---HH
Confidence 356899999999999999999999999999999994 32211 0110 01111 00
Q ss_pred CCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCCccccCCCC
Q 045902 974 HSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVEL--VANPSIIFMDEPTS 1051 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL--~~~p~il~LDEPTs 1051 (1472)
++..+++ .|.+ ..++|++++++..+|++| +.+|++++|||||+
T Consensus 708 ---------------------------i~~~ig~---~d~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~ 752 (934)
T 3thx_A 708 ---------------------------ILARVGA---GDSQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGR 752 (934)
T ss_dssp ---------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC
T ss_pred ---------------------------HHHhcCc---hhhH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC
Confidence 0011111 1111 135888888888888888 89999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1052 GLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1052 gLD~~~~~~i-~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+.....+ +.+++.+.+ .|+|||++||+. ++.+.+|++..+.+ |++...++.
T Consensus 753 GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 753 GTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 9999988777 677788876 499999999995 46688999998875 788876654
No 161
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.59 E-value=1e-16 Score=181.34 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=93.9
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
..+++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 4567999999999999999999999999999999999965 222232 1245689999985 677899
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+.|++.+.......... + ..+.+.+ ...++. |.+..+..+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~----------~-------~~~~~~~---------------~~~L~~--l~~~~~~~~-----~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----------D-------AFDNDLM---------------HRTLKN--IVEGKTVEV-----P 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----------G-------GBCHHHH---------------HHHHHH--HHTTCCEEE-----C
T ss_pred HhHhhhhhccCCCCCCc----------c-------cccHHHH---------------HHHHHH--HHCCCCeec-----c
Confidence 99998764332111000 0 0000111 112222 233344444 3
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
.+|+||+||+.+ ++++.+|+++++|||...+|.. +.+ ..+.+++++.|.
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~---~~~~~i~v~th~ 164 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD---MFHLRLFVDTDS 164 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT---TCSEEEEEECCH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH---hcCeEEEEECCH
Confidence 599999999988 5888899999999988877753 222 236777777654
No 162
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.58 E-value=2.9e-16 Score=208.33 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=112.7
Q ss_pred ceeeccceeEEeC-------CeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeE-EeccCCCC
Q 045902 903 LQLLQDVSGAFRP-------GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISG-YCEQNDIH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~-------Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~g-yv~Q~~~~ 974 (1472)
..+++|+++.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 5699999999988 999999999999999999999 86531 12345 9999753
Q ss_pred CCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 975 SPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
.+||.|++.. + +|+. |... .+.+.+|+|+++ +++|++++.+|++++|||||+|+|
T Consensus 828 --~l~v~d~I~~----r-------------ig~~---d~~~--~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd 882 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R-------------LGAS---DRIM--SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTA 882 (1022)
T ss_dssp --EECCCSBEEE----E-------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSC
T ss_pred --CCCHHHHHHH----H-------------cCCH---HHHh--hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCC
Confidence 4555554410 1 1111 1111 112467777765 999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1055 ARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1055 ~~~-~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
+.. ...++.+|+.++++ |+++|++||+++. ....+|++.++. |++.
T Consensus 883 ~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 883 TFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 987 46678999999876 9999999999653 445678888874 6776
No 163
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.55 E-value=4.7e-15 Score=194.29 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=74.3
Q ss_pred CCCChHHHHHHHHHHHH--hCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 343 RGISGGQKKRVTTGEML--VGPAKALFMDEISTGLDSSTTFQI-VRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL--~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ ...++.+.+..+.+++++.|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999999999888 999999999999999999999888 566777766568899998886 4677899999999
Q ss_pred cCCeEEEecChhHH
Q 045902 420 SEGEIVYQGPREYV 433 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~ 433 (1472)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876554
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.54 E-value=3.1e-16 Score=174.81 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=98.8
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--C---eeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G---YIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~---~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.|+.+- +.+++|++++|+||||||||||+++|+|.... + ...|.+.+++..... .+.++++.|...+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-
Confidence 344333 58999999999999999999999999983221 1 124577777654210 1123344443322221
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH-HHHHHHHHHHHhh-------CCCCccccCCC
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1050 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG-qrqRl~iA~aL~~-------~p~il~LDEPT 1050 (1472)
|+ .+.+.+. ...+.+ +++.+..+.+++. +|+++++||||
T Consensus 89 ~~---------------------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 89 EV---------------------LKHIYVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp HH---------------------HHTEEEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred HH---------------------hhcEEEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 22 2222111 013333 4444666777766 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHhhC-CCEEEEEecCccH---HHHHhhCeEEEEecC
Q 045902 1051 SGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSI---DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1051 sgLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~t~H~~~~---~~~~~~D~v~~l~~g 1099 (1472)
+++|+. . ...+++.|++++++ |.|||+++|..+. .+...+|+++.|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999983 2 23677788887654 9999999995431 255678999999864
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.54 E-value=2.6e-15 Score=196.08 Aligned_cols=145 Identities=13% Similarity=0.120 Sum_probs=98.6
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+..+++|||+.+++|++++|+|||||||||||+++++..... .. |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 457999999999999999999999999999999997631100 00 1000000 0011111 1111112211
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
+++ .. +.+.+|+||+|++.|+++ +.+|++++|||||+|||+.....+
T Consensus 727 d~l------------------------------~~--~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i 773 (918)
T 3thx_B 727 DNI------------------------------YK--GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAI 773 (918)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHH
T ss_pred HHH------------------------------HH--hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHH
Confidence 111 10 124689999999999999 899999999999999999998888
Q ss_pred H-HHHHHHhh-CCCEEEEEecCccHHHHHhhCeE
Q 045902 1062 M-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1062 ~-~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
. .+++.+++ .|+|||++||+++ +.+.+|+.
T Consensus 774 ~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 774 AYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 6 77777765 5999999999965 45566653
No 166
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.52 E-value=1.4e-15 Score=195.98 Aligned_cols=129 Identities=21% Similarity=0.136 Sum_probs=96.9
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+..+++|+|++ |++++|+|||||||||||++|+|.... ...|.+ ... .+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vpa--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VPA--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BSS--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------eeh--hccceeeHHH---hhccCCHH
Confidence 35799999999 999999999999999999999995320 012322 111 1345677776 44556666
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCCccccCC---CCCCCHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVEL--VANPSIIFMDEP---TSGLDAR 1056 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL--~~~p~il~LDEP---TsgLD~~ 1056 (1472)
|++. .++|+|+++++.+|++| +.+|++++|||| |++||..
T Consensus 630 d~l~-----------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 630 DDLA-----------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp ----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred HHHH-----------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence 5542 14799999999999999 999999999999 9999998
Q ss_pred HH-HHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1057 AA-AIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1057 ~~-~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
+. ..+++.|++ .|+|||++||+.+
T Consensus 675 ~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 675 AIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp HHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred HHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 75 567777776 4899999999853
No 167
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=1.4e-16 Score=185.45 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=85.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC-CCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~-~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+++.+++|++++| +|+||||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999998 99999999999999999996 43 3467 8888876533222345789999888878889
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC-CCCHHHH
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAA 1058 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs-gLD~~~~ 1058 (1472)
+.|+.-+...... .+....+.+.+ .+..+... +++|||||||+.+||+++ +|++||||+ |||+...
T Consensus 80 v~Dt~g~~~~~~~--~e~~~~l~~~l--~~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~ 146 (301)
T 2qnr_A 80 VVDTPGYGDAINC--RDCFKTIISYI--DEQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV 146 (301)
T ss_dssp EEEEC-------------CTTHHHHH--HHHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH
T ss_pred hhhhhhhhhhcCc--HHHHHHHHHHH--HHHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH
Confidence 8888766433210 00111111111 11122222 369999999999988875 999999998 5999873
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCcc
Q 045902 1059 AIVMRTVRNTVDT-GRTVVCTIHQPS 1083 (1472)
Q Consensus 1059 ~~i~~~l~~l~~~-g~tvi~t~H~~~ 1083 (1472)
+.++++.+. +.++|++.||..
T Consensus 147 ----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 ----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ----HHHHHHHhcCCEEEEEEeCCCC
Confidence 556666543 789999999863
No 168
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.51 E-value=6.3e-16 Score=182.74 Aligned_cols=180 Identities=12% Similarity=0.145 Sum_probs=123.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC----------CCCceEEEEcC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF----------VPQRTCAYISQ 254 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q 254 (1472)
...+|+++ +.+.+|++++|+||||||||||+++|+|..+++ .|.|.++|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 35689999 999999999999999999999999999999887 79999998652111 01346777777
Q ss_pred CCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc
Q 045902 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD 334 (1472)
Q Consensus 255 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 334 (1472)
.+. ...+.+.-... ...+. ++ ....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~----------~~~~a--------------------------------e~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT----------ATTIA--------------------------------EY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH----------HHHHH--------------------------------HH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH----------HHHHH--------------------------------HH-HHhcc----cc
Confidence 532 22222211000 00000 00 00000 00
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEEecCcch
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH-ITDV-----TMIISLLQPAPE 408 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~-~~~~-----tvii~~~q~~~~ 408 (1472)
..+--+....+|+|| |||++| +++|++ |+|||+....++.+.++++.+ ..|. |+++..|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000001233499999 899999 578876 999999999999999998864 3465 6666655544
Q ss_pred HHhccCeEEEecCCeEEEecChhHH
Q 045902 409 TYDLFDDIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~iv~~G~~~~~ 433 (1472)
..++|++++|.+|+++..|+.++.
T Consensus 230 -~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 -DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ChhhhheEEeeCcEEEEeCCHHHc
Confidence 457899999999999999987665
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.50 E-value=1.3e-16 Score=175.88 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=110.2
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC--CCCCHHHHHHHHHHc
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS--PNVTIYESLLYSAWL 990 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l 990 (1472)
.++|+++||+||||||||||+++|+|...+ .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999996531 368999998776 5689988865421
Q ss_pred CCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHH----HHHHHHHHHHhhCCCCccccCCCCC-------CCHH
Q 045902 991 RLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG-------LDAR 1056 (1472)
Q Consensus 991 ~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq----rqRl~iA~aL~~~p~il~LDEPTsg-------LD~~ 1056 (1472)
..+. ...+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++ ||+.
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~ 134 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDAD 134 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECC
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCC
Confidence 1111 24456677777766544432 24689996 4788999999999999999999999 9999
Q ss_pred HHHHHHHHHHHH-hhCCCEEEEEecCc
Q 045902 1057 AAAIVMRTVRNT-VDTGRTVVCTIHQP 1082 (1472)
Q Consensus 1057 ~~~~i~~~l~~l-~~~g~tvi~t~H~~ 1082 (1472)
....+.+.+++. .+.|+|++.++|+.
T Consensus 135 ~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 135 ADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999998876 45699999999974
No 170
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.50 E-value=2.8e-15 Score=167.06 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=46.3
Q ss_pred CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEEecCc---chHHhccCeEEEecCCe
Q 045902 361 GPAKALFMDEISTGLDSST------------TFQIVRFMRQMVHITDVTMIISLLQPA---PETYDLFDDIILLSEGE 423 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t------------~~~i~~~L~~l~~~~~~tvii~~~q~~---~~~~~~fD~iilL~~G~ 423 (1472)
.+|+++++||||++||+.. ..++++.|+++++..+.|+|++.|... ..+...+|+++.|++|+
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3899999999999999842 237888888888777899988877432 13667899999998753
No 171
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.49 E-value=1.7e-15 Score=175.86 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeEEeccCCCCCCCCCHHHHHH
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TF--ARISGYCEQNDIHSPNVTIYESLL 985 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~--~~~~gyv~Q~~~~~~~lTv~e~l~ 985 (1472)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999997664 379999999875321 11 245899999998888899999987
Q ss_pred HHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHH
Q 045902 986 YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065 (1472)
Q Consensus 986 ~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l 1065 (1472)
+....... ..+++..|+.+..+. -++..++||++|||+|+.+|+.++| .||+.+...+++.+
T Consensus 179 ~~~~~~~d-----~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~ 240 (304)
T 1rj9_A 179 AMKARGYD-----LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQA 240 (304)
T ss_dssp HHHHHTCS-----EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHH
T ss_pred HHHhCCCC-----EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHH
Confidence 64321100 001122222221111 2455669999999999999994333 44444445566666
Q ss_pred HHHhhC-CCEEEEEecCc
Q 045902 1066 RNTVDT-GRTVVCTIHQP 1082 (1472)
Q Consensus 1066 ~~l~~~-g~tvi~t~H~~ 1082 (1472)
+++.+. |.|+|++||+.
T Consensus 241 ~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 241 KKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHCCSEEEEECTT
T ss_pred HHHHHHcCCcEEEEECCc
Confidence 776544 89999999973
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.49 E-value=1.5e-14 Score=161.24 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=108.2
Q ss_pred ceeecccee-EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccc---eeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSG-AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR---ISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~-~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~---~~gyv~Q~~~~~~~l 978 (1472)
...|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.......+ ..++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 457888885 899999999999999999999999997543 12345555443322111111 112222110000 00
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCC--C
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGL--D 1054 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgL--D 1054 (1472)
.+ ++...+.++ .... ....|.++.++...+.....+|+ ++++||||+++ |
T Consensus 86 ~~-----------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d 139 (235)
T 2w0m_A 86 II-----------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK 139 (235)
T ss_dssp EE-----------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred EE-----------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence 00 000000000 0000 12359999999888888888999 99999999888 9
Q ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEecCcc-------HHHHHhhCeEEEEec
Q 045902 1055 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKR 1098 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~-------~~~~~~~D~v~~l~~ 1098 (1472)
+.....+++.|+++++ .|.|||+++|+.. ..+.+.+|++++|.+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 140 PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9989999999999864 4899999999972 236678999999975
No 173
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.48 E-value=7.8e-14 Score=144.51 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=71.0
Q ss_pred ccCCCCChHHHHHHHHH------HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhcc
Q 045902 340 EMRRGISGGQKKRVTTG------EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia------~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~f 413 (1472)
..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ +..+.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhC
Confidence 34456999999999876 899999999999999999999999999999999865 378899888875 567899
Q ss_pred CeEEEe--cCCeE
Q 045902 414 DDIILL--SEGEI 424 (1472)
Q Consensus 414 D~iilL--~~G~i 424 (1472)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 56644
No 174
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.47 E-value=7.7e-15 Score=190.22 Aligned_cols=156 Identities=12% Similarity=0.030 Sum_probs=105.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+..+++|+++. ++|++++|+|||||||||||++|+|....+ . .|...... ...++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q---~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----Y---IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----T---TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----h---cCcccchh--cccceeHHH---HHhhCCHH
Confidence 35699999999 999999999999999999999999852110 0 12111111 134566655 44555665
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
|++... .+.+|+|+++ +..+..++.+|++++|||||+|+|+.....+
T Consensus 661 d~l~~~--------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 661 DDLASG--------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp -----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred HHHHhh--------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence 554211 1246777664 4455557899999999999999999776664
Q ss_pred -HHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1062 -MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1062 -~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+.+++.+.+ .|.|+|++||+++ +.+.+|++..+.+ +++.+..
T Consensus 708 ~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~ 751 (800)
T 1wb9_A 708 AWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALE 751 (800)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEE
Confidence 788888887 4999999999975 4567887766654 5665543
No 175
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.47 E-value=1.5e-15 Score=180.31 Aligned_cols=163 Identities=19% Similarity=0.147 Sum_probs=101.6
Q ss_pred eeccc-eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCee----EEE-EEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 905 LLQDV-SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI----EGS-ISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 905 iL~~v-s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~----~G~-i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.|+++ .+.+++|++++|+||||||||||++.|++.....+. .|. |++++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 46665 689999999999999999999999999996421111 366 888886531 12345666665433221
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-------hCCCCccccCCCC
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-------ANPSIIFMDEPTS 1051 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-------~~p~il~LDEPTs 1051 (1472)
++.||+. +. +. .-|.+|+|++.++++++ .+|++|++||||+
T Consensus 195 ~v~~ni~---------------------~~---~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 195 EVLKHIY---------------------VA---RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHGGGEE---------------------EE---EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHhhCEE---------------------EE---ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 2222211 11 00 02567888898888888 6899999999999
Q ss_pred CCCHHH------------HHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1052 GLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1052 gLD~~~------------~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
++|+.. ...+++.|+++++ .|+|||+|+|... +.-..++...... +|+++.+
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~ 307 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAH 307 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCT
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEee
Confidence 999852 3566677777765 4899999999854 2322334444443 4554433
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=1.8e-15 Score=176.18 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=80.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC-CCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK-SDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
++.+++|+++.| +|+||||||||||++.|.|. ..+. +| |.++|.++..-...+.++|++|++.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6655 78 8888876643222345789999988888899
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|.||..++.... ..+.. ..+ .+++.+. .+ .+.+
T Consensus 80 v~Dt~g~~~~~~-------------~~e~~------~~l-----------------~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAIN-------------CRDCF------KTI-----------------ISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------------------C------TTH-----------------HHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcC-------------cHHHH------HHH-----------------HHHHHHH------HH-----HHHH
Confidence 999987643210 00000 000 1111111 12 2234
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
++|||||||+.+||+++ ++++||||++ ||+... +.++++....+.++|++-|+
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCC
Confidence 59999999999988885 9999999985 999873 55666554345566655443
No 177
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.46 E-value=3.5e-15 Score=197.99 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=109.6
Q ss_pred ceeeeceeeEEeC-------CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEE-EEcCCCC
Q 045902 186 LEILHDVSGIVKP-------SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCA-YISQHDL 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~-------Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~ 257 (1472)
..+++|+++.+++ |++++|+|||||||||||++| |.+.. ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 87642 01233 8888652
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
.+||.|++.. +. |+.+..+.
T Consensus 828 ---~l~v~d~I~~--ri-----------------------------------------------------g~~d~~~~-- 847 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--RL-----------------------------------------------------GASDRIMS-- 847 (1022)
T ss_dssp ---EECCCSBEEE--EC-----------------------------------------------------C---------
T ss_pred ---CCCHHHHHHH--Hc-----------------------------------------------------CCHHHHhh--
Confidence 4566555410 00 00000000
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT-FQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~-~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
....+|++++ ++++|++++.+|++++||||++|+|+... ..++..|+.+++..+.+++++.|.+ ..+...+|++
T Consensus 848 ---~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~ 922 (1022)
T 2o8b_B 848 ---GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCS
T ss_pred ---chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcc
Confidence 0123566655 59999999999999999999999999985 4467888888765578888887654 4566678998
Q ss_pred EEecCCeEE--EecChh
Q 045902 417 ILLSEGEIV--YQGPRE 431 (1472)
Q Consensus 417 ilL~~G~iv--~~G~~~ 431 (1472)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556543
No 178
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.46 E-value=5.6e-16 Score=170.79 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=105.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCC--CCCCHHHHHHHhhh
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHH--GEMTVRETLDFSGR 273 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 273 (1472)
.++|++++|+||||||||||+++|+|.+.+ .++|++|++.++ ..+|++|++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999997642 378999998776 56899998765321
Q ss_pred ccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH----
Q 045902 274 CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ---- 349 (1472)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq---- 349 (1472)
.. + .. +.+ ....+++.+++.+..+..+ ..+|+||
T Consensus 61 ~~--~-------~~-------------~~~---------------~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-------AF-------------DLA---------------LYLEHAQALLRGLPVEMPV-----YDFRAYTRSPR 98 (211)
T ss_dssp SG--G-------GB-------------CHH---------------HHHHHHHHHHTTCCEEECC-----EETTTTEECSS
T ss_pred Ch--h-------hh-------------hHH---------------HHHHHHHHHHcCCCcCCCc-----ccCcccCCCCC
Confidence 00 0 00 000 1123455666655444433 3488886
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTG-------LDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsg-------LDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
+||+++|++++.+|.++++||||++ ||+.+..++.+.+++..+..|.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999999987655567777665554
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.46 E-value=5.2e-14 Score=162.18 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=102.4
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR 991 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~ 991 (1472)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+.- ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~~-~g~~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLHA-LGAH 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHHH-HHTT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHHH-HHhh
Confidence 589999999999999999999999998433 2444 23443211 2346677655421 011112111 0111
Q ss_pred CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC--CCCHHH---HHHHHHHHH
Q 045902 992 LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AAIVMRTVR 1066 (1472)
Q Consensus 992 ~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs--gLD~~~---~~~i~~~l~ 1066 (1472)
......+++++.+.+.+..+.. +..||+||+|++ ++++.+|+++++||||+ ++|... ...+++.|+
T Consensus 94 -~~~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~ 164 (279)
T 1nlf_A 94 -LSAEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRME 164 (279)
T ss_dssp -SCHHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH
T ss_pred -cChhhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHH
Confidence 1223456677888777665433 346999998865 68889999999999999 999744 478888999
Q ss_pred HHh-hCCCEEEEEecCcc
Q 045902 1067 NTV-DTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1067 ~l~-~~g~tvi~t~H~~~ 1083 (1472)
+++ +.|+|||+++|+..
T Consensus 165 ~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 165 AIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHCCEEEEEEEC--
T ss_pred HHHHHcCCEEEEEecCCC
Confidence 986 45999999999854
No 180
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.45 E-value=6.4e-14 Score=183.02 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIV-RFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~-~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
..+|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+++..|.|++++.|.+ +..+++|+.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 3489999999999998 8999999999999999999999997 677777665688999988764 455666653
No 181
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.44 E-value=6.7e-15 Score=174.70 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=101.5
Q ss_pred eeeece-eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCC-CCceeE-EEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 187 EILHDV-SGIVKPSRMTLLLGPPGSGKTTLLQALSGKS--DKS-LRVSGR-VTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 187 ~iL~~v-s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
.-|+++ +|.+++|++++|+||||||||||++.|+|.. +++ ....|+ |.+++.+. + ..+.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 346665 6899999999999999999999999999986 433 011367 77777542 1 12234555554433322
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
++.||+.+...
T Consensus 195 -~v~~ni~~~~~-------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 -EVLKHIYVARA-------------------------------------------------------------------- 205 (349)
T ss_dssp -HHGGGEEEEEC--------------------------------------------------------------------
T ss_pred -HHhhCEEEEec--------------------------------------------------------------------
Confidence 44444322110
Q ss_pred CCCCChHHHHHHHHHHHHh-------CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEE
Q 045902 342 RRGISGGQKKRVTTGEMLV-------GPAKALFMDEISTGLDSST------------TFQIVRFMRQMVHITDVTMIISL 402 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~-------~~p~illLDEptsgLDs~t------------~~~i~~~L~~l~~~~~~tvii~~ 402 (1472)
--|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+.|+|++.
T Consensus 206 --~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 206 --FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp --CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred --CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 01344555555555555 7899999999999999852 35677778888877788888877
Q ss_pred ecCcchHHhccCeEEEecCCeEEEecCh
Q 045902 403 LQPAPETYDLFDDIILLSEGEIVYQGPR 430 (1472)
Q Consensus 403 ~q~~~~~~~~fD~iilL~~G~iv~~G~~ 430 (1472)
|... ..-..|++......|+++.++..
T Consensus 284 h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC----------------CCCCCTTCS
T ss_pred cccc-ccccccCCccccCCcceEeecCc
Confidence 6543 33334556667777877766553
No 182
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.44 E-value=7.3e-15 Score=165.82 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCC-----HHHHHHHHHHHHHHHHhCCcEEEEEEecCcch--------HHhc
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLD-----SSTTFQIVRFMRQMVHITDVTMIISLLQPAPE--------TYDL 412 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLD-----s~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~--------~~~~ 412 (1472)
+-++..+...+..-..+|+++++||||++|| ...+..+.+.++.+++ .|.|++++.|..... +..+
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCCCCcccccccChhhE
Confidence 3344444444444468999999999999997 6666668888888865 588999988765433 1578
Q ss_pred c-CeEEEec
Q 045902 413 F-DDIILLS 420 (1472)
Q Consensus 413 f-D~iilL~ 420 (1472)
+ |+|++|+
T Consensus 198 ~aD~vi~l~ 206 (251)
T 2ehv_A 198 IARGVIVLD 206 (251)
T ss_dssp GCSEEEEEE
T ss_pred eeeEEEEEe
Confidence 8 9999995
No 183
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.43 E-value=1.4e-14 Score=164.91 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=95.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
++|+|+| +++|++++|+|||||||||||++|+|.++++ .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 8999999999999999999999999988652 169999998764321 11111111110
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011110 012
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|++||++|..+|+++++|||| |..+...++ +. +. .|.++++++|.+. ..+.+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 988866544 33 23 5788888888754 6678899888854
No 184
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.43 E-value=3.3e-13 Score=165.16 Aligned_cols=75 Identities=20% Similarity=0.398 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 343 RGISGGQKKRVTTGEMLV----GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
..||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .+.++|++.|+ .+..+.+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 349999999999999999 78999999999999999999999999998754 36788887776 467789999999
Q ss_pred ec
Q 045902 419 LS 420 (1472)
Q Consensus 419 L~ 420 (1472)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 185
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.43 E-value=7.9e-15 Score=170.34 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---------CceEEEEcCCCCCCCCCCHHHHH
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---------QRTCAYISQHDLHHGEMTVRETL 268 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 268 (1472)
+|++++|+||||||||||++.|+|.+.++ +|+|.++|.++..... ++.++|++|++...|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999887 8999999998754321 23589999999888989999999
Q ss_pred HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChH
Q 045902 269 DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGG 348 (1472)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGG 348 (1472)
.++.. .+. +. .+++..|+.+..+. -++..
T Consensus 178 ~~~~~-~~~---------------d~---------------------------~llDt~G~~~~~~~--------~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------DL---------------------------LFVDTAGRLHTKHN--------LMEEL 206 (304)
T ss_dssp HHHHH-HTC---------------SE---------------------------EEECCCCCCTTCHH--------HHHHH
T ss_pred HHHHh-CCC---------------CE---------------------------EEecCCCCCCchHH--------HHHHH
Confidence 76421 000 00 01112233222111 14555
Q ss_pred HHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 045902 349 QKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 349 qrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 405 (1472)
+|||++|||+++.+|+.++| .||+.+..++++.++++.+..+.|+|+..|.+
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 68999999999999995555 56666666777778777665678888877753
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.43 E-value=2.3e-14 Score=169.83 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=89.5
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
+|+++ ...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|.......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~------- 182 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDT------- 182 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTB-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecccc-------
Confidence 44444 67899999999999999999999999975421 13555444333211 111222344443222111
Q ss_pred HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 985 ~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
++..+ +||++|..+|++|++|||| |..+.. .
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 22222 8999999999999999999 666544 4
Q ss_pred HHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 045902 1065 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1098 (1472)
Q Consensus 1065 l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~ 1098 (1472)
+.+++++|.||++|+|+.+. .+.+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 44456779999999999874 388999998854
No 187
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=2.3e-15 Score=162.83 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~ 994 (1472)
|++++|+||||||||||+++|+|... . +| |.++|.+..+ ...++.+||++|+.. ... +++ +.+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hcccccC
Confidence 78999999999999999999999764 2 57 8888876533 235677899999751 111 111 0110000
Q ss_pred hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH-HHHH---HHhhCCCCccccC--CCCCCCHHHHHHHHHHHHHH
Q 045902 995 DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 995 ~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl-~iA~---aL~~~p~il~LDE--PTsgLD~~~~~~i~~~l~~l 1068 (1472)
+ ..-.+..++.. ...+|+|||+++ ++++ |++.+|++|+||| ||..+|......+.+++
T Consensus 69 ~------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l--- 132 (189)
T 2i3b_A 69 P------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL--- 132 (189)
T ss_dssp C------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH---
T ss_pred C------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH---
Confidence 0 00011133332 235999999988 4454 5789999999999 89999987655554444
Q ss_pred hhCCCEEEE----EecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1069 VDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1069 ~~~g~tvi~----t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+...++|+ ++|+.+. ...|++..+. +|+++...+.
T Consensus 133 -~~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 133 -STPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp -HCSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSS
T ss_pred -hCCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChH
Confidence 44445553 2388642 3456666665 4777776653
No 188
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=1e-15 Score=165.70 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-CCceEEEEcCCCCCCCCCCHHHHHHHhhhccCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 277 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 277 (1472)
|++++|+||||||||||+++|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 78 888888775432 246789999964 111 1111 00000
Q ss_pred CchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHH-HH
Q 045902 278 GTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT-TG 356 (1472)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvs-ia 356 (1472)
.+. +...+..+| ++...+|||||+++. ++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~-~~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVG-QYVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESS-SSEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccc-eEEEcchHHHHHHHHHHh
Confidence 000 000111333 234459999999984 44
Q ss_pred H---HHhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEecCcchHHhccCeEEEecCCeEEEec
Q 045902 357 E---MLVGPAKALFMDE--ISTGLDSSTTFQIVRFMRQMVHITDVTMII---SLLQPAPETYDLFDDIILLSEGEIVYQG 428 (1472)
Q Consensus 357 ~---aL~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii---~~~q~~~~~~~~fD~iilL~~G~iv~~G 428 (1472)
+ |+..+|++++||| |+..+|......+.+.++ . ..++|+ ++.|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 898899876555555554 2 334443 2213322 3467888888899988643
No 189
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.40 E-value=4.6e-14 Score=181.95 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=96.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-KSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999753 22 34421 0 01234666655 4444555
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55441 24
Q ss_pred CChHHHHHHHHHHHH--hCCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCcchHHhcc
Q 045902 345 ISGGQKKRVTTGEML--VGPAKALFMDEI---STGLDSSTT-FQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413 (1472)
Q Consensus 345 LSGGqrkRvsia~aL--~~~p~illLDEp---tsgLDs~t~-~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~f 413 (1472)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.+++++.|.+ +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 899999999999999 999999999999 999998875 568888765 367888888764 344443
No 190
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.38 E-value=8.9e-15 Score=185.82 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=106.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCC-CCCceeEEEEcCeeCCC------CCCCceEEEEcCCCCCCCCCCHHHHHHHhhhc
Q 045902 202 TLLLGPPGSGKTTLLQALSGKSDK-SLRVSGRVTYCGHELTE------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 274 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~~~-~~~~~G~I~~~G~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 274 (1472)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999866 5 8999999988521 12346799999999999999999999775321
Q ss_pred cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHH
Q 045902 275 LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354 (1472)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvs 354 (1472)
.+.. . .++| ++++.
T Consensus 125 ~~~~--------------~-------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGE--------------G-------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCS--------------S-------------------------------------------------SCCC---SCCEE
T ss_pred hcCC--------------c-------------------------------------------------cccc---hHHHH
Confidence 1000 0 0011 11112
Q ss_pred HHHHHhCCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCcc---h---HHhc-----cCeE
Q 045902 355 TGEMLVGPAKALFMDEI------STGLDSSTTFQIVRFMRQMVHIT-DVTMIISLLQPAP---E---TYDL-----FDDI 416 (1472)
Q Consensus 355 ia~aL~~~p~illLDEp------tsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~q~~~---~---~~~~-----fD~i 416 (1472)
++.+....|+++++||| |+|||+....++.+.++++.... +.+++++.|.... + +.+. ...|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 99999999999999999975443 3444444433221 1 1122 2458
Q ss_pred EEecCCeEEEecChhHHHHH
Q 045902 417 ILLSEGEIVYQGPREYVLDF 436 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~~~ 436 (1472)
+|+.++..+..|+.+++.+.
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp EEEECGGGSSSSSTTCCCCC
T ss_pred EEecchhhcCcccHHHHHHH
Confidence 88999988888876655443
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.38 E-value=5.3e-13 Score=148.59 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHHHHhCCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCc-------chHHhcc
Q 045902 345 ISGGQKKRVTTGEMLVGPAK--ALFMDEISTGL--DSSTTFQIVRFMRQMVHITDVTMIISLLQPA-------PETYDLF 413 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~--illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~-------~~~~~~f 413 (1472)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|++++.|... +.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 59999988888777778999 99999999888 9999999999999998777889888877662 4577899
Q ss_pred CeEEEecCC
Q 045902 414 DDIILLSEG 422 (1472)
Q Consensus 414 D~iilL~~G 422 (1472)
|+|++|+..
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999764
No 192
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.37 E-value=2.2e-14 Score=157.45 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=88.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC---CCeeEEEEEEcCccC--ChhcccceeEEeccCCCCCCCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGYIEGSISISGYPK--KQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~G~~~--~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.+|++ +.+++|+.++|+|+||||||||++.|+|... ..+..|.+.+.+.-. ....+....|+..+. .+.-
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~ 90 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEE 90 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------C
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHH
Confidence 46777 8899999999999999999999999999751 012345443321100 000000011111100 0000
Q ss_pred C---HHHHHHHHHH-cC------------CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHH-HHHHHHHhhCC
Q 045902 979 T---IYESLLYSAW-LR------------LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR-LTIAVELVANP 1041 (1472)
Q Consensus 979 T---v~e~l~~~~~-l~------------~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR-l~iA~aL~~~p 1041 (1472)
. .+..+..... .+ .+.....+++.+.+...++....+++. ...+|+||||| +.++++++.+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK-~D~~s~~~~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK-ADKLASGARKAQLNMVREAVLAF 169 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC-GGGSCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec-ccCCCchhHHHHHHHHHHHHHhc
Confidence 0 0111111100 00 001111122333322222221112211 34699999999 89999999999
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhhCCCE
Q 045902 1042 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1074 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~t 1074 (1472)
+++++|||||++|......+++.|.++..+|.|
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998766644
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.36 E-value=3e-14 Score=180.93 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=93.8
Q ss_pred EEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC------hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK------QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~ 992 (1472)
+||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~- 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI- 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH-
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh-
Confidence 999999999999999999998653 14899999998731 2346678999999999999999999997643210
Q ss_pred CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC------CCCCCHHHHHHHHHHHH
Q 045902 993 PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAAIVMRTVR 1066 (1472)
Q Consensus 993 ~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP------TsgLD~~~~~~i~~~l~ 1066 (1472)
+... .++| ++++.++.+...+|+++++||| |+|||+.....+.++++
T Consensus 126 -------------~~~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 126 -------------AGEG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp -------------HCSS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred -------------cCCc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 0000 0111 1112222233458999999999 99999999999999999
Q ss_pred HHhhC--CCEEEEEecCcc
Q 045902 1067 NTVDT--GRTVVCTIHQPS 1083 (1472)
Q Consensus 1067 ~l~~~--g~tvi~t~H~~~ 1083 (1472)
++..+ +.++++++|+.+
T Consensus 179 ~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 179 KYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHTTSSSCCEEEEEESSSC
T ss_pred HHHhcCCCCceEEEeccch
Confidence 97543 678899999876
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.35 E-value=1.5e-12 Score=150.08 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=100.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhc
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 274 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 274 (1472)
-+++|++++|+||||||||||++.|++... .|.+ +.|.+.. ....+.|+..++. .. .+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~~-~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------PT-AIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------HH-HHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------HH-HHH--HHH
Confidence 489999999999999999999999998543 3444 2343321 1346788876542 21 110 000
Q ss_pred cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHH
Q 045902 275 LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354 (1472)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvs 354 (1472)
. .+ +...+ ....+.+++.+++.+..+..+ ..+|+||++++
T Consensus 88 ~----------~~-------g~~~~-----------------~~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 H----------AL-------GAHLS-----------------AEERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL- 127 (279)
T ss_dssp H----------HH-------HTTSC-----------------HHHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH-
T ss_pred H----------HH-------HhhcC-----------------hhhhhhccCceEEeecCCCCc-----ccCCHHHHHHH-
Confidence 0 00 00000 001233566777766555433 45999998876
Q ss_pred HHHHHhCCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCcEEEEEEecC
Q 045902 355 TGEMLVGPAKALFMDEIST--GLDSSTT---FQIVRFMRQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 355 ia~aL~~~p~illLDEpts--gLDs~t~---~~i~~~L~~l~~~~~~tvii~~~q~ 405 (1472)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|++.|..
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57888999999999999 9998554 7888999999876788988877654
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=3.3e-14 Score=171.55 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=91.5
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.+++|+||+| +|+|+||||||||+++|+|...+....|.+.+++.+ ....+.++|++|++...+.+|+
T Consensus 22 ~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 22 YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 3467999999998 999999999999999999975421112222222211 1123567999999888888999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC---CccccCCC-CCCCHH
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS---IIFMDEPT-SGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~---il~LDEPT-sgLD~~ 1056 (1472)
.|++.+..... .......+.+.++ ..++.+++||++||++++.+|+ +|++|||| .|||+.
T Consensus 93 ~Dt~g~~~~~~--~~~~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~ 156 (418)
T 2qag_C 93 VDTPGFGDAVD--NSNCWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 156 (418)
T ss_dssp EECC-------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH
T ss_pred eechhhhhhcc--chhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH
Confidence 99987754321 1111112222211 1366778889999999999999 89999999 699988
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
.. +.++++.. +.+||+++|..+
T Consensus 157 d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 157 DI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HH----HHHHHHhc-cCcEEEEEEccc
Confidence 74 34455543 788888888643
No 196
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.34 E-value=1.8e-13 Score=177.42 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=103.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC--ceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ--RTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~--~~~~yv~Q~d~~~~~lT 263 (1472)
..+++|+++. ++|++++|+||||||||||||+|+|..... ..| . +.+. ..++++.| +++.++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~----~vpa~~~~i~~~~~---i~~~~~ 658 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------S----YVPAQKVEIGPIDR---IFTRVG 658 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------C----CBSSSEEEECCCCE---EEEEEC
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------c----ccchhcccceeHHH---HHhhCC
Confidence 4689999999 999999999999999999999999963211 012 1 1111 23444443 444455
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+.|++... ..
T Consensus 659 ~~d~l~~~----------------------------------------------------------------------~s 668 (800)
T 1wb9_A 659 AADDLASG----------------------------------------------------------------------RS 668 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhh----------------------------------------------------------------------hh
Confidence 55554211 01
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI-VRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.+|+|+++ ++.+...+.+|++++||||++|+|+.....+ ...++.+.+..+.+++++.|.+ +..+++|++..+.+|
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEE
Confidence 25666654 4444456899999999999999999888776 6778887764578999988875 455688887777777
Q ss_pred eEEEec
Q 045902 423 EIVYQG 428 (1472)
Q Consensus 423 ~iv~~G 428 (1472)
++.+..
T Consensus 746 ~~~~~~ 751 (800)
T 1wb9_A 746 HLDALE 751 (800)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776553
No 197
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.33 E-value=2.7e-14 Score=158.19 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHc
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWL 990 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l 990 (1472)
-..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.... .++.++|++|++..++.+|+...
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~------- 82 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDA------- 82 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTC-------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCH-------
Confidence 3578999999999999999999999999765323689999998765432 23457899987544333222000
Q ss_pred CCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh
Q 045902 991 RLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070 (1472)
Q Consensus 991 ~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~ 1070 (1472)
.++.+. +..... +.| +++ ..+++.++++++|| ||+.++..+.+.+.
T Consensus 83 ----------f~E~~~---~~~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~---- 128 (219)
T 1s96_A 83 ----------FLEHAE---VFGNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP---- 128 (219)
T ss_dssp ----------EEEEEE---ETTEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----
T ss_pred ----------HHHHHH---HHhccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----
Confidence 000000 000000 122 222 45566778999999 99999999988776
Q ss_pred CCCEEEEEecCcc
Q 045902 1071 TGRTVVCTIHQPS 1083 (1472)
Q Consensus 1071 ~g~tvi~t~H~~~ 1083 (1472)
++.||++++|+++
T Consensus 129 ~~~tI~i~th~~~ 141 (219)
T 1s96_A 129 HARSIFILPPSKI 141 (219)
T ss_dssp TCEEEEEECSSHH
T ss_pred CCEEEEEECCCHH
Confidence 5899999999865
No 198
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.32 E-value=2.3e-12 Score=137.02 Aligned_cols=75 Identities=11% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE
Q 045902 1020 VDGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~~----~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999974 4699999999999999999999999999865 47899999984 46788999986
Q ss_pred Ee
Q 045902 1096 MK 1097 (1472)
Q Consensus 1096 l~ 1097 (1472)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.29 E-value=9.9e-12 Score=137.19 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=100.0
Q ss_pred eeeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.+.++..+ . .+..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~~~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSPER 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCHHH
Confidence 4677776 4899999999999999999999999998 221 2334443321 1 11111
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH--HHHHHHHHHHHhhC-CCCccccCCCCCCCHHH--
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGLDARA-- 1057 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG--qrqRl~iA~aL~~~-p~il~LDEPTsgLD~~~-- 1057 (1472)
-.......... .+++++.+.. . ..|++ +++++..+++++.+ |+++++||||+++|+..
T Consensus 62 ~~~~~~~~~~~----~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 62 LVQMAETRGLN----PEEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp HHHHHHTTTCC----HHHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred HHHHHHhcCCC----hHHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 11000011111 1222222211 1 23334 46788889999986 99999999999999732
Q ss_pred ------HHHHHHHHHHHhhC-CCEEEEEecCccH------------HHHHhhCeEEEEecC
Q 045902 1058 ------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1058 ------~~~i~~~l~~l~~~-g~tvi~t~H~~~~------------~~~~~~D~v~~l~~g 1099 (1472)
...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 34566678888754 8999999997541 456789999999864
No 200
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.28 E-value=1.8e-15 Score=163.70 Aligned_cols=167 Identities=15% Similarity=0.163 Sum_probs=110.3
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD 995 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~ 995 (1472)
|++++|+||||||||||+++|++. ..|.+.++|.+... ....|+++|.....+..|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 789999999999999999999973 24788998865321 1234677776644455688888766432110
Q ss_pred HHHHHHHHHcccccccccccCC---CCCCCC--CHHHHHHHHHHH------HHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 996 MFVEEVMELVEMKALRNSLVGL---PGVDGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 996 ~~~~~v~~~l~l~~~~~~~~~~---~~~~~L--SgGqrqRl~iA~------aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
. -+...+.+...+. ...+.+ |+|++|++.++. +|+.+|+...+|+ |||+..... ++.
T Consensus 71 -------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~ 138 (189)
T 2bdt_A 71 -------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEE 138 (189)
T ss_dssp -------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHH
T ss_pred -------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHH
Confidence 0 0000011110000 001124 888888888888 9999999999994 899988888 888
Q ss_pred HHHHhhCCCEEEEEecC-ccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1065 VRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1065 l~~l~~~g~tvi~t~H~-~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
++.+.+.+.+||.++|+ ++ ++.+.+|+++ +.|+++..|++.
T Consensus 139 ~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 139 FESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp HHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred HhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 88886667899999998 65 4778899998 468888888763
No 201
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.26 E-value=8e-14 Score=150.80 Aligned_cols=140 Identities=15% Similarity=0.036 Sum_probs=90.2
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeEEeccCCCCCCCCCHHHHHHHHHHc
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-TFARISGYCEQNDIHSPNVTIYESLLYSAWL 990 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l 990 (1472)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|+.. +..|+.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 478999999999999999999999999732 58899998653221 11234678877654 457888988764321
Q ss_pred C--CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHH
Q 045902 991 R--LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 991 ~--~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l 1068 (1472)
. ......++.+++..++..+.+. +. .+..+|+|++||+.++|++.++|+++ +|+.....+.+.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HhccCCeEEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 1 0000001111111111111110 11 12369999999999999999999987 6887777777766554
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=1.8e-13 Score=164.18 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=108.1
Q ss_pred ccceeeccceeEEeCCeE--EEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVL--TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
++.+ |++||+++++|++ +||+||||||||||+++|+|..- .|.-. ... .....++.++|++|++.+++.+
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCcccccc
Confidence 3345 9999999999999 99999999999999999999742 22111 110 1112345789999998888889
Q ss_pred CHHHHHHHHHHcCCC--ch-------HHHHHHHHHc-ccc----cccccc----cC--CCCCCCCCHHHHHHHHHHHHHh
Q 045902 979 TIYESLLYSAWLRLP--KD-------MFVEEVMELV-EMK----ALRNSL----VG--LPGVDGLSTEQRKRLTIAVELV 1038 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~--~~-------~~~~~v~~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqRl~iA~aL~ 1038 (1472)
||.|++.|+...... .. ...++.++.. +.. ...|.. +. .+...+|+-.+ +.|+++|.
T Consensus 98 tv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 98 TIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred chhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 999988664321100 00 1122223222 222 112221 11 11123577776 78999999
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHH-HhhCCCEEEEEecC
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~-l~~~g~tvi~t~H~ 1081 (1472)
.+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999987 77779999988764
No 203
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.25 E-value=1.1e-12 Score=157.06 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=97.1
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCee-EEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
.+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+... ..++.++|++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee----------
Confidence 3677776 79999999999999999999999999764 23 6899777765432 2345567888741
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
+++. ...+ +.+|+++|..+|++|++|||| |+.+...
T Consensus 191 ----------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~-- 226 (372)
T 2ewv_A 191 ----------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET-- 226 (372)
T ss_dssp ----------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH--
T ss_pred ----------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH--
Confidence 1110 1134 469999999999999999999 7766443
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
.++. +..|.+|++|+|..+ ..+.+||++.|.
T Consensus 227 -~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 227 -ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp -HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred -HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 3443 356999999999965 667888887664
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.24 E-value=1.1e-12 Score=155.44 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=45.3
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 354 sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
+||++|..+|+++++|||| |..+...+. +.+. .|.++++++|..+ ..+.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~----~~~~-~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLAL----TAAE-TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHH----HHHH-TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHH----HHHh-cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 8999999999999999999 666544333 3343 5888888887765 33789999988654
No 205
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.23 E-value=1.1e-12 Score=156.50 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=100.2
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC-hhcccceeEEec-cCCCCCCCCCHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK-QETFARISGYCE-QNDIHSPNVTIYE 982 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~-~~~~~~~~gyv~-Q~~~~~~~lTv~e 982 (1472)
+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|.... ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998774 4899999985421 122456678888 54321
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
+++++..+|-.|+.++..+|+.+++|||+. ..+.
T Consensus 234 ---------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~ 267 (361)
T 2gza_A 234 ---------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAY 267 (361)
T ss_dssp --------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHH
T ss_pred ---------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHH
Confidence 012233456667777777899999999986 2455
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 268 ~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 268 DFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp HHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 667776544568899999965 56788999998764
No 206
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.5e-12 Score=157.01 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=85.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ -...+.++|+.|++..++.+||.
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 46899999998 99999999999999999998764311 2222222111 01124589999998888889999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.+...... .+ .... ..+++- ..+
T Consensus 94 Dt~g~~~~~~~-------------~~---------~~~~--------------i~~~i~------------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDN-------------SN---------CWQP--------------VIDYID------------------SKF 119 (418)
T ss_dssp ECC---------------------------------CHH--------------HHHHHH------------------HHH
T ss_pred echhhhhhccc-------------hh---------hHHH--------------HHHHHH------------------HHH
Confidence 99877532100 00 0000 011110 125
Q ss_pred ChHHHHHHHHHHHHhCCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 346 SGGQKKRVTTGEMLVGPAK---ALFMDEIS-TGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~---illLDEpt-sgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
+++.++|+.|||+++.+|+ ++++|||| .|||+... +.++.+.. +.++|++++.
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 6677889999999999999 99999999 69998773 33444432 5667766654
No 207
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.22 E-value=5.1e-11 Score=126.58 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=70.0
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 342 RRGISGGQKKRVTTGEMLV----GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
...||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|++.|++ .+.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEE
Confidence 4569999999999999996 56899999999999999999999999998864 35666666653 5778999998
Q ss_pred Ee--cCCeE-EEecChhHHH
Q 045902 418 LL--SEGEI-VYQGPREYVL 434 (1472)
Q Consensus 418 lL--~~G~i-v~~G~~~~~~ 434 (1472)
.+ .+|.. +.....++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 65 46654 3344444443
No 208
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.22 E-value=1.3e-13 Score=155.76 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=97.5
Q ss_pred CCeEEEEEcCCCCChhHHHhhhc---CCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH--
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLA---GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW-- 989 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-- 989 (1472)
++++++|+||||||||||+++|+ |... +..|+|.++|.+... ...+.+++++|+....+..|+.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 9765 457888887754321 122334566777777888899999876431
Q ss_pred ------c-CCCchH-HHHHHHHH--cc------------cccccccccCCCCCCCCCHHHHHHHHHHHHH-hhCCCCccc
Q 045902 990 ------L-RLPKDM-FVEEVMEL--VE------------MKALRNSLVGLPGVDGLSTEQRKRLTIAVEL-VANPSIIFM 1046 (1472)
Q Consensus 990 ------l-~~~~~~-~~~~v~~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL-~~~p~il~L 1046 (1472)
+ ..+... ..+.+.+. .+ +..+.++. +..||| |+ ++| +.+|++++|
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~lll 170 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVHGI 170 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSSTTB
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccccc
Confidence 1 112221 12222111 11 11122222 235888 66 677 999999999
Q ss_pred c----CCCCCCCHHHHHHHHHHHHHHhhC
Q 045902 1047 D----EPTSGLDARAAAIVMRTVRNTVDT 1071 (1472)
Q Consensus 1047 D----EPTsgLD~~~~~~i~~~l~~l~~~ 1071 (1472)
| |||+|||..+...+.+.++++.++
T Consensus 171 D~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 171 DDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 9 999999999999999999988655
No 209
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.21 E-value=6e-13 Score=147.39 Aligned_cols=148 Identities=19% Similarity=0.193 Sum_probs=94.7
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH----HHHHH
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV----RETLD 269 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 269 (1472)
-..++|++++|+||||||||||+++|+|..+++ ..+|.|.+++.+.... .++.++|++|++..++.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998753 3589999988765432 23457899986544433333 12211
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
+. |+ ..|-.
T Consensus 89 ~~------------------------------------------------------------------~~-----~yg~~ 97 (219)
T 1s96_A 89 VF------------------------------------------------------------------GN-----YYGTS 97 (219)
T ss_dssp ET------------------------------------------------------------------TE-----EEEEE
T ss_pred HH------------------------------------------------------------------hc-----cCCCC
Confidence 11 00 01111
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecC
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.|++++.|++. ++. .|+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~-~l~---~Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKI-ELD---RRL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHH-HHH---HHH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHH-HHH---HHH--HHcC----CCC
Confidence 221 23444557999999 99999999998876 3677777665432 332 243 6777 577
Q ss_pred hhHHHHHH
Q 045902 430 REYVLDFF 437 (1472)
Q Consensus 430 ~~~~~~~F 437 (1472)
.+++..-+
T Consensus 155 ~e~i~~rl 162 (219)
T 1s96_A 155 EEVIAKRM 162 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.21 E-value=1.7e-13 Score=148.33 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=87.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHHHHHHhhh
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGR 273 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 273 (1472)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++..... .+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 6999999876533221 234567777543 35688888866432
Q ss_pred ccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHH
Q 045902 274 CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRV 353 (1472)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRv 353 (1472)
.. ...... ...+.+++.++++...+. +.....+|+|++||+
T Consensus 78 ~~------------~~~~~~------------------------~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RY------------AKEGYF------------------------VILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HH------------HHTSCE------------------------EEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HH------------hccCCe------------------------EEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 10 000000 000000111111111100 011234999999999
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 045902 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQM 390 (1472)
Q Consensus 354 sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l 390 (1472)
.++|++..+|+++ +|+.....+.+.++.+
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 9999999999876 6887766666665443
No 211
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.21 E-value=1.2e-14 Score=174.03 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=95.7
Q ss_pred eeeceeeEEeC--CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCce----eEEEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 188 ILHDVSGIVKP--SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVS----GRVTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 188 iL~~vs~~i~~--Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~----G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
+.+.|+..+++ |+.++|+||||||||||+++|+|.++++ + |+|.++++.. ..+..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 45689999999 9999999999999999999999999886 6 6666532100 00001111
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
... +++.+... ... ....+..+ ++ . ++..+..++.
T Consensus 221 ~~~-~~I~~~~q------~~~-~~~~t~~~---nl------------------~-----------~~~~~~~~~~----- 255 (365)
T 1lw7_A 221 SDY-PQMALGHQ------RYI-DYAVRHSH---KI------------------A-----------FIDTDFITTQ----- 255 (365)
T ss_dssp TTH-HHHHHHHH------HHH-HHHHHHCS---SE------------------E-----------EESSCHHHHH-----
T ss_pred hHH-HHHHHHHH------HHH-HHHHhccC---CE------------------E-----------EEeCCchHHH-----
Confidence 122 33333210 000 00000000 00 0 0000000111
Q ss_pred CCCCChHHHHHHHHHHHHh-CCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHh
Q 045902 342 RRGISGGQKKRVTTGEMLV-GPAKALFMDE---IS------TGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~-~~p~illLDE---pt------sgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 411 (1472)
...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++.. +|. +..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~~-~~~r 333 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SPS-YLDR 333 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CSS-HHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CCC-HHHH
Confidence 1126677788888888775 5899999999 65 589999999999999887665566766654 443 3444
Q ss_pred ccCeEEEe
Q 045902 412 LFDDIILL 419 (1472)
Q Consensus 412 ~fD~iilL 419 (1472)
++|.+.++
T Consensus 334 ~~~~i~~i 341 (365)
T 1lw7_A 334 YNQVKAVI 341 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 212
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.21 E-value=1.8e-11 Score=135.12 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=59.7
Q ss_pred CChHH--HHHHHHHHHHhCC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHHhCCcEEEEEEecCcc------
Q 045902 345 ISGGQ--KKRVTTGEMLVGP-AKALFMDEISTGLDSST--------TFQIVRFMRQMVHITDVTMIISLLQPAP------ 407 (1472)
Q Consensus 345 LSGGq--rkRvsia~aL~~~-p~illLDEptsgLDs~t--------~~~i~~~L~~l~~~~~~tvii~~~q~~~------ 407 (1472)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.|++++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45554 5688888999986 99999999999999743 2456677888887778888877665431
Q ss_pred ------hHHhccCeEEEecCC
Q 045902 408 ------ETYDLFDDIILLSEG 422 (1472)
Q Consensus 408 ------~~~~~fD~iilL~~G 422 (1472)
.+.+.+|.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 456789999999754
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.19 E-value=7.6e-12 Score=149.21 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=95.0
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-CCceEEEEc-CCCCC--CCCCC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-PQRTCAYIS-QHDLH--HGEMT 263 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 263 (1472)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999987 899999985311111 245678888 54332 13334
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
++
T Consensus 241 ~~------------------------------------------------------------------------------ 242 (361)
T 2gza_A 241 AA------------------------------------------------------------------------------ 242 (361)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
..|+.++..+|+.+++||+.. .++.+.++.+.. ...|++.++|..+ ....+||+..+..|.
T Consensus 243 ---------~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 243 ---------TLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---------HHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---------HHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 444455556789999999985 234455655543 3456677777654 667789998887764
No 214
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.16 E-value=3.1e-14 Score=167.12 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCCC------CeeEEEEEEcCccCCh------------------hcccceeEEe---c
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKTG------GYIEGSISISGYPKKQ------------------ETFARISGYC---E 969 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~~------~~~~G~i~i~G~~~~~------------------~~~~~~~gyv---~ 969 (1472)
++++|+|+||||||||++.|+|...+ .+..|+|.+||.++.. ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999987521 1247899999977532 1233446666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--H----c-CCCchH---HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhh
Q 045902 970 QNDIHSPNVTIYESLLYSA--W----L-RLPKDM---FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVA 1039 (1472)
Q Consensus 970 Q~~~~~~~lTv~e~l~~~~--~----l-~~~~~~---~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~ 1039 (1472)
|+....++.++.|+..++. . + ..+... .++.+++.+++.+..+... .+|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7666566777777654320 0 0 000000 0011122223333333321 589999999999999999
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1040 ~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99988 999 67888888875 5899999999753
No 215
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.16 E-value=8.9e-13 Score=138.30 Aligned_cols=78 Identities=22% Similarity=0.087 Sum_probs=65.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+++++|+.+++|++++|+||||||||||+++|+|.+ +. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999998 76 899999998764211111 2789998888 89999
Q ss_pred HHHHH
Q 045902 266 ETLDF 270 (1472)
Q Consensus 266 E~l~f 270 (1472)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 216
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.15 E-value=1.1e-13 Score=165.63 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=97.5
Q ss_pred eeccceeEEeC--CeEEEEEcCCCCChhHHHhhhcCCCCCCeeE----EEEEEc----CccC--ChhcccceeEEeccCC
Q 045902 905 LLQDVSGAFRP--GVLTALVGVSGAGKTTLMDVLAGRKTGGYIE----GSISIS----GYPK--KQETFARISGYCEQND 972 (1472)
Q Consensus 905 iL~~vs~~i~~--Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~----G~i~i~----G~~~--~~~~~~~~~gyv~Q~~ 972 (1472)
+.+.|++.|++ |+.++|+||||||||||+++|+|...+ .+ |+|.++ |.+. ....+ +.++|++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45789999999 999999999999999999999998763 35 555543 2111 00011 1122222211
Q ss_pred CCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCCCccccC---
Q 045902 973 IHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-ANPSIIFMDE--- 1048 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-~~p~il~LDE--- 1048 (1472)
..+ ..|+.||+.+ ++ .+..+.. ...+|+|++||..+++++. .+|++++|||
T Consensus 234 ~~~-~~t~~~nl~~------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~ 288 (365)
T 1lw7_A 234 IDY-AVRHSHKIAF------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 288 (365)
T ss_dssp HHH-HHHHCSSEEE------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred HHH-HHhccCCEEE------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 000 0011111100 00 0011111 1135677788888888775 5999999999
Q ss_pred CC------CCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1049 PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1049 PT------sgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
|+ .++|...+..+.+.|+++.+ .|.+||+++|. + .....+|++.+++
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999998754 48899999974 3 3445556555553
No 217
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.15 E-value=4.6e-14 Score=152.69 Aligned_cols=173 Identities=10% Similarity=0.037 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 278 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 278 (1472)
|++++|+||||||||||+++|++. . +|.+.++|.++... ...++++|.+...+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 689999999999999999999972 2 68899998765432 123566665544445678888766432100
Q ss_pred chhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC--ChHHHHHHHHH
Q 045902 279 TRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI--SGGQKKRVTTG 356 (1472)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL--SGGqrkRvsia 356 (1472)
. .+ . ....+ .+...... +..+.+ |+|+++|+.++
T Consensus 71 ----------~----~~------------------~--~~ild----~~~~~~~~------~~~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 71 ----------L----AQ------------------N--DVVLD----YIAFPDEA------EALAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp ----------H----TT------------------C--EEEEE----SCCCHHHH------HHHHHHHHHHCSSEEEEEE
T ss_pred ----------h----cC------------------C--cEEEe----eccCHHHH------HHHHHHHHhcccCCCeEEE
Confidence 0 00 0 00000 00000000 001124 88999888877
Q ss_pred H------HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecCh
Q 045902 357 E------MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPR 430 (1472)
Q Consensus 357 ~------aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~ 430 (1472)
. +++.+++...+|+ +||+..... .+.++.+.. .+.++|.+.|....++.+.+|+|+ ++|+++.+|++
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAG 179 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecC
Confidence 7 8888888888884 899988888 888877643 456777766552457778899998 99999999987
Q ss_pred hHH
Q 045902 431 EYV 433 (1472)
Q Consensus 431 ~~~ 433 (1472)
+-+
T Consensus 180 ~~~ 182 (189)
T 2bdt_A 180 DPL 182 (189)
T ss_dssp ---
T ss_pred Cch
Confidence 654
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=6.8e-12 Score=150.60 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=101.5
Q ss_pred eeceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC---CCCceEEEEcCCCCCCCCCC
Q 045902 189 LHDVSGIVKPSRM--TLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF---VPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 189 L~~vs~~i~~Ge~--~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lT 263 (1472)
|+|+|+.+++|++ ++|+||||||||||+|+|+|..- .| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 99999999999999999999741 22 222111 11346899999998888999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCc----cccccc--
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLD----ICADIM-- 336 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~----~~~dt~-- 336 (1472)
|.||+.|+.... ....... +..+++. ..+..+... ++. ...|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~~---------------i~~~i~~----------q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYKP---------------IVEFIDA----------QFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSHH---------------HHHHHHH----------HHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhhH---------------HHHHHHH----------HHHHHHHHHHhhhhhhccccccccc
Confidence 999997753211 0000000 0011100 011222222 333 112322
Q ss_pred --cc--CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEE
Q 045902 337 --VG--NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ-MVHITDVTMI 399 (1472)
Q Consensus 337 --vg--~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~-l~~~~~~tvi 399 (1472)
+. .+...+|+-.+ +.|+++|..+++++++|||+..|.......+.+.+++ +.. .|..++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~ 213 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIY 213 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCC
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEE
Confidence 11 11124577666 7899999999999999999999999988888888886 543 455443
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.14 E-value=4e-11 Score=134.45 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=88.7
Q ss_pred eccce-eEEeCCeEEEEEcCCCCChhHHHhhhcC--CCCC---CeeEEEEEEcCccC-Chhc---ccceeEEeccCCCCC
Q 045902 906 LQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTG---GYIEGSISISGYPK-KQET---FARISGYCEQNDIHS 975 (1472)
Q Consensus 906 L~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~---~~~~G~i~i~G~~~-~~~~---~~~~~gyv~Q~~~~~ 975 (1472)
|+.+- +-+++|++++|+||||||||||++.|++ ...+ +...|.+.+++... .... ..+.+++.+
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~------ 86 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSG------ 86 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH------
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCH------
Confidence 44433 6799999999999999999999999998 3321 11256777776542 1110 111112111
Q ss_pred CCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHH-HHHHHHHh--hCCCCccccCCCCC
Q 045902 976 PNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSG 1052 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR-l~iA~aL~--~~p~il~LDEPTsg 1052 (1472)
+++++.+... ...+..+... +.-+.+++ .+|+++++||||+.
T Consensus 87 -----------------------~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 87 -----------------------SDVLDNVAYA------------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp -----------------------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred -----------------------HHHhhCeEEE------------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 1122211110 1244444332 33344444 48999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHhhC-CCEEEEEecCccHH------------------HHHhhCeEEEEecC
Q 045902 1053 LDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 1099 (1472)
Q Consensus 1053 LD~~-------~-----~~~i~~~l~~l~~~-g~tvi~t~H~~~~~------------------~~~~~D~v~~l~~g 1099 (1472)
+|+. + ...+++.|++++++ |+|||+++|..... +...+|.+++|.++
T Consensus 132 ~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 132 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 9985 3 34566667776654 99999999964321 11168999999863
No 220
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.12 E-value=1.8e-12 Score=136.04 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=66.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++... .. ...+++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~-~~-~~~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEE-YN-IAGKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEE-EE-ETTEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeee-cc-CCCcceeccccc-cCCc
Confidence 3457899999999999999999999999999999999977 3 479999999876422 11 113789988788 8999
Q ss_pred HHHHHH
Q 045902 981 YESLLY 986 (1472)
Q Consensus 981 ~e~l~~ 986 (1472)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999865
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.12 E-value=7.2e-12 Score=152.02 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=102.6
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------c--ccceeEEeccCCCCCC
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------T--FARISGYCEQNDIHSP 976 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~--~~~~~gyv~Q~~~~~~ 976 (1472)
-+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368999999999999999999999999999999765 2368999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCC-CccccCCCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-ANPS-IIFMDEPTSGLD 1054 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-~~p~-il~LDEPTsgLD 1054 (1472)
..|+++++.+...-... . -+++..|+.+... .+-..-+|++.+++++. ..|. +||...||+|.|
T Consensus 361 ~~tV~e~l~~a~~~~~D---v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~ 426 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID---V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 426 (503)
T ss_dssp HHHHHHHHHHHHHTTCS---E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH
T ss_pred HHHHHHHHHHHHhcCCC---E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH
Confidence 89999999876431110 0 0111111111111 12234457888888764 4564 555555888866
Q ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEec
Q 045902 1055 ARAAAIVMRTVRNTVD-TGRTVVCTIH 1080 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~-~g~tvi~t~H 1080 (1472)
.. +.++.+.+ -|.|.|++||
T Consensus 427 al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 427 AV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HH------HHHHHHHHHTCCSEEEEEC
T ss_pred HH------HHHHHHHhhcCCCEEEEEc
Confidence 54 23444432 3789999999
No 222
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.11 E-value=4e-13 Score=142.76 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---C---C-ceEE----EEcCCCCCCCCCCHHHHH
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---P---Q-RTCA----YISQHDLHHGEMTVRETL 268 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~---~-~~~~----yv~Q~d~~~~~lTV~E~l 268 (1472)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. . + +.++ +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998764333699999998865432 1 1 2345 777765544 000
Q ss_pred HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHH-hCCcccccccccCccCCCCCh
Q 045902 269 DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKI-LGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~-lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+ . . +. .+ ..+.+++. + + ..||.+++ +|||
T Consensus 77 -------~--~-~----~~-----~a------------------------~l~~~i~~~l--~-g~dt~i~E----glSg 106 (171)
T 2f1r_A 77 -------V--S-E----EE-----GN------------------------DLDWIYERYL--S-DYDLVITE----GFSK 106 (171)
T ss_dssp -------C--C-H----HH-----HT------------------------CHHHHHHHHT--T-TCSEEEEE----SCGG
T ss_pred -------C--C-h----hh-----hh------------------------CHHHHHHhhC--C-CCCEEEEC----CcCC
Confidence 0 0 0 00 00 11223343 3 2 46899986 5999
Q ss_pred HHHHHHHHHHHHhCCCcEe-------EEeCCCCC---CCHHHHHHHHHHHHHHHHhC
Q 045902 348 GQKKRVTTGEMLVGPAKAL-------FMDEISTG---LDSSTTFQIVRFMRQMVHIT 394 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~il-------lLDEptsg---LDs~t~~~i~~~L~~l~~~~ 394 (1472)
|||||++|||+++++|++. .-|.|..+ +|......+.+.+.+.....
T Consensus 107 Gq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 107 AGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp GCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 9999999999999999873 22444322 34455667777776655433
No 223
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.10 E-value=5.9e-11 Score=129.92 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=45.8
Q ss_pred CCCChHHHHH-HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 343 RGISGGQKKR-VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 343 ~gLSGGqrkR-vsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
..+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.++..
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3499999999 8999999999999999999999999999999999988765
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.10 E-value=9.6e-13 Score=148.67 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhc
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALS---GKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 274 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 274 (1472)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.++.|+...++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 988775 7888887754221 0112345567777788888999999764321
Q ss_pred -cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhcccc----ccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 275 -LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLK----TSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
.+.+... .+. +... ............. -....+.+++. ..+..+ ..+||
T Consensus 102 ~~~~~~il------------~g~-~~~~-~~~~~l~~~~~~~~vi~L~~~~~~~l~r-----~~~r~~-----~~lSg-- 155 (246)
T 2bbw_A 102 RRGQHWLL------------DGF-PRTL-GQAEALDKICEVDLVISLNIPFETLKDR-----LSRRWI-----HPPSG-- 155 (246)
T ss_dssp CTTSCEEE------------ESC-CCSH-HHHHHHHTTCCCCEEEEEECCHHHHHHH-----HHTEEE-----ETTTT--
T ss_pred cCCCeEEE------------ECC-CCCH-HHHHHHHhhcCCCEEEEEECCHHHHHHH-----HHcCCC-----cCCCC--
Confidence 0000000 000 0000 0000000000000 00001111111 123233 34999
Q ss_pred HHHHHHHHHH-hCCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 045902 350 KKRVTTGEML-VGPAKALFMD----EISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 350 rkRvsia~aL-~~~p~illLD----EptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
|| +++ +.+|++++|| |||+|||..+...+.+.++++.+
T Consensus 156 --rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 156 --RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp --EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred --Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 66 677 9999999999 99999999999999999988765
No 225
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.08 E-value=1e-10 Score=140.22 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=67.5
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1021 DGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1021 ~~LSgGqrqRl------~iA~aL~~~-p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567888999 99999999999999999999999999974 3579999999975 56789999
Q ss_pred EEEecCc
Q 045902 1094 FLMKRGG 1100 (1472)
Q Consensus 1094 ~~l~~gg 1100 (1472)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
No 226
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.07 E-value=1.4e-12 Score=138.68 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCC------hhccc-ceeE----EeccCCCCCCCCCHHHHH
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKK------QETFA-RISG----YCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~G~~~~------~~~~~-~~~g----yv~Q~~~~~~~lTv~e~l 984 (1472)
++++|+|+||||||||++.|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999997552 233799999998732 22344 3566 788876654 110
Q ss_pred HHHHHcCCCchH--HHHHHHHH-cccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc-------cccCCCCC--
Q 045902 985 LYSAWLRLPKDM--FVEEVMEL-VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII-------FMDEPTSG-- 1052 (1472)
Q Consensus 985 ~~~~~l~~~~~~--~~~~v~~~-l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il-------~LDEPTsg-- 1052 (1472)
...+. ..++.++. +. + .|+.++ .+||||||||++|||+++.+|++. .-|.|..+
T Consensus 77 -------~~~~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -------VSEEEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -------CCHHHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -------CChhhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 00011 23444444 43 2 355554 369999999999999999999874 23454322
Q ss_pred -CCHHHHHHHHHHHHHHhhCCC
Q 045902 1053 -LDARAAAIVMRTVRNTVDTGR 1073 (1472)
Q Consensus 1053 -LD~~~~~~i~~~l~~l~~~g~ 1073 (1472)
+|......+.+.|.+...+|.
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccHHHHHHHHHHHHhccC
Confidence 233445566666666555543
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=5.5e-11 Score=123.58 Aligned_cols=95 Identities=15% Similarity=0.238 Sum_probs=70.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE--EEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG--SISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G--~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
.+|+++ +|+.++|+||||+|||||+++|++.... +| .+.+++.+. ...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~-----------------~~~----- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASM-----------------PLT----- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTS-----------------CCC-----
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHh-----------------hHH-----
Confidence 456666 8999999999999999999999996532 23 333333221 100
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
+++.+|++|++|||++ +|...+..+
T Consensus 79 ------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l 103 (149)
T 2kjq_A 79 ------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALL 103 (149)
T ss_dssp ------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHH
T ss_pred ------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHH
Confidence 1246799999999998 665558889
Q ss_pred HHHHHHHhhCCCE-EEEEecCcc
Q 045902 1062 MRTVRNTVDTGRT-VVCTIHQPS 1083 (1472)
Q Consensus 1062 ~~~l~~l~~~g~t-vi~t~H~~~ 1083 (1472)
.+++.++.++|++ +|+++|.+.
T Consensus 104 ~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 104 FSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHcCCcEEEEECCCCH
Confidence 9999998877888 899999643
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.05 E-value=4.2e-11 Score=141.09 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=78.3
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEc-CccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS-GYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..+++..|++|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 4444443 47999999999999999999999997651 247999887 75543 23456789999998888888998842
Q ss_pred HHHHHcCCCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 045902 985 LYSAWLRLPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVEL 1037 (1472)
Q Consensus 985 ~~~~~l~~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL 1037 (1472)
. ...+.+ ....++++.+++.++.+... .++| ||+||++||+++
T Consensus 283 l----~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 L----WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C----CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h----cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 122222 22446677777777666553 4799 999999999864
No 229
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=1.8e-12 Score=153.13 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=105.4
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cccceeEEeccCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TFARISGYCEQNDIH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~~~~~gyv~Q~~~~ 974 (1472)
...+|+++|+++++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3568999999999999999999999999999999999754 2368899988765321 234568999998877
Q ss_pred CCCC------------CHHHHHHHHHH-----------------------------cCCCc-hHHHH----HHHHHcccc
Q 045902 975 SPNV------------TIYESLLYSAW-----------------------------LRLPK-DMFVE----EVMELVEMK 1008 (1472)
Q Consensus 975 ~~~l------------Tv~e~l~~~~~-----------------------------l~~~~-~~~~~----~v~~~l~l~ 1008 (1472)
++.. +++|.+..... +..+. ....+ .+.+...+.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 6432 23333311000 00000 00000 111222221
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhh------CCCCccccCCCCCCCHHHHHHHHHHHHHHh
Q 045902 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069 (1472)
Q Consensus 1009 ~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~------~p~il~LDEPTsgLD~~~~~~i~~~l~~l~ 1069 (1472)
.+ |+.. ......+|+|++|++..+++++. +|++++ ||++|......+++.|.++.
T Consensus 199 vl-NK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 199 AV-NKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EE-ECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EE-Echh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 11 2111 00113579999999999999987 688876 99999999999999998864
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.05 E-value=8.2e-12 Score=151.49 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=68.3
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC------C---CCceEEEEcCCCCCC
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF------V---PQRTCAYISQHDLHH 259 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 259 (1472)
-+++|+.+++|++++|+|+||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998776 79999987765431 0 134689999998888
Q ss_pred CCCCHHHHHHHhh
Q 045902 260 GEMTVRETLDFSG 272 (1472)
Q Consensus 260 ~~lTV~E~l~f~~ 272 (1472)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998753
No 231
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.04 E-value=2.7e-11 Score=144.88 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=91.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
+|++++ +++|++++|+|||||||||||++|+|.++++ .+|+|.+.|.++. ...++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 7999999999999999999999999988652 1599977775543 22334456666631
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+|++ ...+
T Consensus 191 -----------------------------------------------------------~g~~-----------~~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED-----------TKSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT-----------BSCS--
T ss_pred -----------------------------------------------------------cCCC-----------HHHH--
Confidence 0000 0113
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
+.+|+++|..+|+++++|||+ |..+... .++. + ..|.++++++|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~-~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-A-ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-H-TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-H-hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 2 2567877776653 4677788877664
No 232
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.03 E-value=2.4e-10 Score=139.74 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1021 DGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~----~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|+|++ ...+.+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 57999999999999999999999999999876688999999994 467889999999
Q ss_pred ec
Q 045902 1097 KR 1098 (1472)
Q Consensus 1097 ~~ 1098 (1472)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 233
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.03 E-value=2.6e-11 Score=129.90 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=42.7
Q ss_pred HhhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCccH
Q 045902 1037 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084 (1472)
Q Consensus 1037 L~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~ 1084 (1472)
.+.+|++|+||||++ ++|+.....+.+++.+..++|+++|+|||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 356999999999995 999999999999999888789999999998753
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.02 E-value=1.3e-11 Score=144.56 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=93.3
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cccce--eEEeccCCCCCCCCCHHHH
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TFARI--SGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~~~~--~gyv~Q~~~~~~~lTv~e~ 983 (1472)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+++. +.+++|.....|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 47899999999999999999999999765 3478999999875321 12333 4489999988999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHH
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~ 1063 (1472)
+.+........ .+++..|+.+..+ .=.++.-.|++++..++.+++||.+| | ..+++
T Consensus 204 l~~~~~~~~d~-----vliDtaG~~~~~~------------~l~~eL~~i~ral~~de~llvLDa~t-~------~~~~~ 259 (328)
T 3e70_C 204 IQHAKARGIDV-----VLIDTAGRSETNR------------NLMDEMKKIARVTKPNLVIFVGDALA-G------NAIVE 259 (328)
T ss_dssp HHHHHHHTCSE-----EEEEECCSCCTTT------------CHHHHHHHHHHHHCCSEEEEEEEGGG-T------THHHH
T ss_pred HHHHHhccchh-----hHHhhccchhHHH------------HHHHHHHHHHHHhcCCCCEEEEecHH-H------HHHHH
Confidence 98653211100 0011111111111 11223334788887666666666443 3 45566
Q ss_pred HHHHHhh-CCCEEEEEecC
Q 045902 1064 TVRNTVD-TGRTVVCTIHQ 1081 (1472)
Q Consensus 1064 ~l~~l~~-~g~tvi~t~H~ 1081 (1472)
.++.+.+ .+.|+|++||.
T Consensus 260 ~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 260 QARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHhcCCCEEEEeCc
Confidence 6666653 48999999994
No 235
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.01 E-value=6.8e-13 Score=164.44 Aligned_cols=173 Identities=12% Similarity=0.041 Sum_probs=107.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCC---------
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI--------- 973 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~--------- 973 (1472)
..+++++++.+++|+.++|+|||||||||||++|+|..++ .+|.|.++|.+.-.......+++..|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4588999999999999999999999999999999998764 47999999865211111223444444322
Q ss_pred -------------CCCCCCHHHHHHHHHHcCCC-------chHHHHHHHHHccccc--ccccccCC-----CCCCCCCHH
Q 045902 974 -------------HSPNVTIYESLLYSAWLRLP-------KDMFVEEVMELVEMKA--LRNSLVGL-----PGVDGLSTE 1026 (1472)
Q Consensus 974 -------------~~~~lTv~e~l~~~~~l~~~-------~~~~~~~v~~~l~l~~--~~~~~~~~-----~~~~~LSgG 1026 (1472)
+...++..|++.+....... +....+++++.+.... +...+... .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 12345555554332211110 0122344555544421 11111100 001247999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEE--EecCccHHHHHhh
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1090 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~--t~H~~~~~~~~~~ 1090 (1472)
||||++++.+ | |+|||+.+...+++.|.++.+.|+|+++ ++|+.+ ++...+
T Consensus 405 ~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 405 TRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp CEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999877521 7 9999998887777777777666889875 889754 343343
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.01 E-value=1.7e-10 Score=129.25 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=42.6
Q ss_pred CCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCcch------------------HH
Q 045902 361 GPAKALFMDEISTGLDSS-------T-----TFQIVRFMRQMVHITDVTMIISLLQPAPE------------------TY 410 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~-------t-----~~~i~~~L~~l~~~~~~tvii~~~q~~~~------------------~~ 410 (1472)
.+|+++++|||++.+|+. + ..++++.|+++++..+.|++++.|..... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999975 3 34567777777777788888876533211 22
Q ss_pred hccCeEEEecCC
Q 045902 411 DLFDDIILLSEG 422 (1472)
Q Consensus 411 ~~fD~iilL~~G 422 (1472)
.++|.+++|+.|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 378999999865
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.01 E-value=4.7e-11 Score=140.65 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=79.2
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCCceeEEEEc-CeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-KSLRVSGRVTYC-GHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.+++++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4555554 4899999999999999999999999988 76 8999987 765432 23457899999998899989998
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
+ .. .+. ...+.. ...+.+++.+|+.+..|.... ++|
T Consensus 281 ~---~l--~~l----------~~~e~~------------------------~~~~e~l~~~gl~~f~~~~~~-----~lS 316 (358)
T 2rcn_A 281 F---GL--WHL----------EPEQIT------------------------QGFVEFHDYLGHCKYRDCKHD-----ADP 316 (358)
T ss_dssp C---CC--CCC----------CHHHHH------------------------HTSGGGGGGTTCSSSTTCCSS-----SCT
T ss_pred h---hh--cCC----------CHHHHH------------------------HHHHHHHHHcCCchhcCCCcc-----cCC
Confidence 4 11 110 000000 012335667788777776554 499
Q ss_pred hHHHHHHHHHHHH
Q 045902 347 GGQKKRVTTGEML 359 (1472)
Q Consensus 347 GGqrkRvsia~aL 359 (1472)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999765
No 238
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.00 E-value=2.8e-11 Score=145.99 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=92.8
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCC----------CCC
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND----------IHS 975 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~----------~~~ 975 (1472)
-++|++++++|+.++|+|+|||||||||++|+|..+ .+.+++.. +....+|++.+++ .+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCcceEEEEeccccc
Confidence 379999999999999999999999999999999742 22333221 1112234444432 221
Q ss_pred CCCCHHHHHHHHHHcCCCchHHHHH---HHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 976 PNVTIYESLLYSAWLRLPKDMFVEE---VMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~~~~~~~---v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
.... +. ..+. ....+. +-..+.+.++.+. ....||+|++||+.+|++|+.+|.||++ ++
T Consensus 217 ~~a~--~~------~~L~-~~fl~~~era~~lL~vvDls~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 217 EGAS--EG------KGLG-LEFLRHIARTRVLLYVLDAADE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp CCGG--GS------CCSC-HHHHHHHTSSSEEEEEEETTSC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred cchh--hh------hhhh-HHHHHHHHHHHhhhEEeCCccC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 1100 00 0000 011111 1111111122111 1346999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHH-hhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1053 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l-~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+|...+ ..++.+++. .+.|.+++.+|..-...+-++++.+
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 998776 444444444 4457777665543333455555544
No 239
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.98 E-value=1.2e-12 Score=153.71 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--------CCCCCceeEEEEcCeeCCCCCC------------------CceEEEE
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS--------DKSLRVSGRVTYCGHELTEFVP------------------QRTCAYI 252 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~--------~~~~~~~G~I~~~G~~~~~~~~------------------~~~~~yv 252 (1472)
=++++|+|+||||||||||.|.|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 344 7999999988765421 1234455
Q ss_pred ---cCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCC
Q 045902 253 ---SQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGL 329 (1472)
Q Consensus 253 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 329 (1472)
+|+...++..+|.||..++.. ......+.. +++.. . ....+.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p-------~~~~~~~~~---------~~~~~---~---------~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADP-------GPIIQTFFS---------HEVLC---Q---------RYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCH-------HHHHHHHHH---------SHHHH---H---------HEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCH-------HHHHHHHhc---------Ccccc---C---------eEEECCEEEEEEH
Confidence 455544556666666544310 000000000 00000 0 0000111222333
Q ss_pred cccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 045902 330 DICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406 (1472)
Q Consensus 330 ~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 406 (1472)
.+..+... .+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+++++.|.+.
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 33333322 38999999998888888888877 888 67788888764 4678888777643
No 240
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=7.3e-12 Score=147.89 Aligned_cols=183 Identities=13% Similarity=0.069 Sum_probs=108.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 258 (1472)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.++ +|+|.+.|.++.... .++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999998776 799999998774321 23568999998877
Q ss_pred CCCC---------C---HHHHHHHh-h---hc---cCCCchhHHHHHhhHHHHhcCC----CCChhHHHHHHHHHhcccc
Q 045902 259 HGEM---------T---VRETLDFS-G---RC---LGVGTRFELLAELSRREKDAGI----KPDPEIDAFMKATAMSGLK 315 (1472)
Q Consensus 259 ~~~l---------T---V~E~l~f~-~---~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 315 (1472)
++.. | ++|.+... . .. ..+|.+.... .+ +..... .....-+.. ...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~-~v---~~~~d~vl~v~d~~~~~~~------~~i- 187 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET-AV---ADLTDFFLVLMLPGAGDEL------QGI- 187 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH-HH---HTTSSEEEEEECSCC------------C-
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh-hH---HhhCCEEEEEEcCCCcccH------HHH-
Confidence 7532 2 33332110 0 00 0111100000 00 000000 000000000 000
Q ss_pred ccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 045902 316 TSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG------PAKALFMDEISTGLDSSTTFQIVRFMRQ 389 (1472)
Q Consensus 316 ~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~ 389 (1472)
......+...+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 188 -~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 188 -KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp -CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred -HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 0001111112222 222211 013479999999999999887 588877 999999999999999987
Q ss_pred HHH
Q 045902 390 MVH 392 (1472)
Q Consensus 390 l~~ 392 (1472)
...
T Consensus 258 ~~~ 260 (337)
T 2qm8_A 258 HRS 260 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.98 E-value=1.8e-11 Score=143.36 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=61.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---------CceEEEEcCCCCCCCCCCHHH
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---------QRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.++..... +..+.+++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999998876 8999999998754321 123569999999999999999
Q ss_pred HHHHh
Q 045902 267 TLDFS 271 (1472)
Q Consensus 267 ~l~f~ 271 (1472)
++.++
T Consensus 203 ~l~~~ 207 (328)
T 3e70_C 203 AIQHA 207 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99765
No 242
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.95 E-value=4e-11 Score=144.61 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=96.6
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHH
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETL 268 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 268 (1472)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..++++.+++. ..+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 379999999999999999999999999999999742 12333333222 24566665441 111222221
Q ss_pred HH---hhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 269 DF---SGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 269 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
-+ +....+.+.. +.+.. ..++.++..++++ + .....+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~~~--------era~~lL~vvDls---~-----~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLRHI--------ARTRVLLYVLDAA---D-----EPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHHHH--------TSSSEEEEEEETT---S-----CHHHHH
T ss_pred ccccchhhhhhhhHH------------------------HHHHH--------HHHHhhhEEeCCc---c-----CCHHHH
Confidence 11 0000000000 00000 0011122223332 2 223349
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
|+||+||+.+|++|...|.++++ +++|...+ ..++.+++..+..+.+++.+.......+-++++
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 99999999999999999999999 99999877 555555555444566665544333333433333
No 243
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.95 E-value=4.9e-11 Score=137.61 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=83.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 276 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 276 (1472)
+++.+++|.||+|||||||.+.|++.+.+. | . ..+.+.+|+|++.+++. ++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 467899999999999999999999987642 2 0 12345666999988864 88999877521000
Q ss_pred CCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc--c--cccccccCccCCCCChHHHHH
Q 045902 277 VGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD--I--CADIMVGNEMRRGISGGQKKR 352 (1472)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~--~~dt~vg~~~~~gLSGGqrkR 352 (1472)
. + ...+.....+.+.+ ...++.+.-. . .....+. .+...+||||+||
T Consensus 92 l---------~----~~~g~p~a~d~~~l---------------~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R 142 (290)
T 1odf_A 92 L---------L----QGRGLPGTHDMKLL---------------QEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDR 142 (290)
T ss_dssp G---------G----SSSCSTTSBCHHHH---------------HHHHHHHTC------CCEEEEC-CEETTHHHHTCEE
T ss_pred h---------h----hhccCcchhHHHHH---------------HHHHHHhhccCccccCcceeec-cCccccCCccccc
Confidence 0 0 00000000011111 1223333221 0 0111121 3446799999999
Q ss_pred HHHH--HHHhCCCcEeEEeCCCCCCCHHH
Q 045902 353 VTTG--EMLVGPAKALFMDEISTGLDSST 379 (1472)
Q Consensus 353 vsia--~aL~~~p~illLDEptsgLDs~t 379 (1472)
+.+| +++ +|+|+|+||++++||+..
T Consensus 143 ~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 143 CPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cccccceEc--CCCEEEEeCccccCCccc
Confidence 9997 555 999999999999999864
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.95 E-value=6.5e-12 Score=151.73 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=95.2
Q ss_pred hhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hccccee
Q 045902 893 MKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETFARIS 965 (1472)
Q Consensus 893 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~~~~~ 965 (1472)
+++.+..++...+|+++ + .++|++++|+|||||||||||++|+|...+ .+|+|.+.|.|+.. ....+.+
T Consensus 146 l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRV 221 (418)
T ss_dssp GGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGG
T ss_pred HHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEcccc
Confidence 34445555556689998 5 489999999999999999999999997653 36899998877531 1123334
Q ss_pred EEec---------cCCCC--CCC----CCHHHHHHHHHH-------cCCCchHHHHHHHHHcccccccccccCCCCCCCC
Q 045902 966 GYCE---------QNDIH--SPN----VTIYESLLYSAW-------LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 966 gyv~---------Q~~~~--~~~----lTv~e~l~~~~~-------l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~L 1023 (1472)
|+.+ |++.. ... .|+.+++.+... +.........+.+..+++.... . ...|
T Consensus 222 g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~-----~~~L 294 (418)
T 1p9r_A 222 DMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--I-----SSSL 294 (418)
T ss_dssp TBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--H-----HHHE
T ss_pred CcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--H-----HHHH
Confidence 5544 77654 233 689999887542 1111112222345566665432 1 2469
Q ss_pred CHHHHHHHHHHHHHhhCCCCcc
Q 045902 1024 STEQRKRLTIAVELVANPSIIF 1045 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~ 1045 (1472)
||||+|| ||++|+.+|++..
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHH--hhhhhcCCCCccC
Confidence 9999999 9999999999865
No 245
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.91 E-value=1.4e-11 Score=152.70 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=66.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|+++|.+--.......+.++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 35789999999999999999999999999999999999887 899999886522222234567777766544457888
Q ss_pred HHHHHhhh
Q 045902 266 ETLDFSGR 273 (1472)
Q Consensus 266 E~l~f~~~ 273 (1472)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876554
No 246
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.90 E-value=2.7e-09 Score=127.82 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=64.8
Q ss_pred CCCCChHHHHHH------HHHHHHhCC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 342 RRGISGGQKKRV------TTGEMLVGP-AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 342 ~~gLSGGqrkRv------sia~aL~~~-p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
...+|||||||+ ++|+++.++ |++++|||||+|||+.++..+.+.|+++. .+.+++++.|++ ++...+|
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCG--GGGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChH--HHHhhCC
Confidence 456999999988 567899999 99999999999999999999999999864 245788888875 4678999
Q ss_pred eEEEec
Q 045902 415 DIILLS 420 (1472)
Q Consensus 415 ~iilL~ 420 (1472)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
No 247
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.88 E-value=5.7e-11 Score=137.09 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=82.5
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH----
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW---- 989 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~---- 989 (1472)
+++.++||.|++|||||||.+.|++.... .| . . ++.+.+|+||+.+++. +.++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 57899999999999999999999987542 11 0 0 2345566999988754 78888877521
Q ss_pred c--C-CCch---HHHHHHHHHccccc---c-cccccCCCCCCCCCHHHHHHHHHH--HHHhhCCCCccccCCCCCCCHHH
Q 045902 990 L--R-LPKD---MFVEEVMELVEMKA---L-RNSLVGLPGVDGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 990 l--~-~~~~---~~~~~v~~~l~l~~---~-~~~~~~~~~~~~LSgGqrqRl~iA--~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
+ + .+.. ....+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+|||+||||+++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1 1 1221 23344455443220 0 0001111 1246999999999997 555 999999999999999853
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.85 E-value=4.2e-11 Score=131.64 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=82.2
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR 991 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~ 991 (1472)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|......... ..+....... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~~~~~~~~~-~~~~------------- 83 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PRGLLPRKGA-PETF------------- 83 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GGTCGGGTTS-GGGB-------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-HhcccccCCC-Cchh-------------
Confidence 579999999999999999999999997542 22357777776654322111 1111110000 0000
Q ss_pred CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH-HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh
Q 045902 992 LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070 (1472)
Q Consensus 992 ~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA-~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~ 1070 (1472)
......+.++.+...+-.+...... ..++|+||+||+++| ++++.++.++++|||.. ..+++..
T Consensus 84 --~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~- 148 (208)
T 3c8u_A 84 --DFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIW- 148 (208)
T ss_dssp --CHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTC-
T ss_pred --hHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhc-
Confidence 0011122222222111111111111 235899999999998 88999999999999841 1122222
Q ss_pred CCCEEEEEecCccHHHHHhhCe
Q 045902 1071 TGRTVVCTIHQPSIDIFEAFDE 1092 (1472)
Q Consensus 1071 ~g~tvi~t~H~~~~~~~~~~D~ 1092 (1472)
-.+|++.|..+..+.....|
T Consensus 149 --d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 149 --DVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp --SEEEEECCCHHHHHHHHHHH
T ss_pred --CEEEEEeCCHHHHHHHHHHH
Confidence 36777777655434445554
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.85 E-value=4.9e-11 Score=144.10 Aligned_cols=137 Identities=19% Similarity=0.158 Sum_probs=88.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEc-----
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYIS----- 253 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~----- 253 (1472)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++....+ .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4478888 4 4899999999999999999999999998876 7999999887742211 12234433
Q ss_pred ----CCCCC--CCC----CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHH
Q 045902 254 ----QHDLH--HGE----MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYV 323 (1472)
Q Consensus 254 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 323 (1472)
|++.. +++ .|+.+++.++..-...-. .+ ... +.. ..-..
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~------tl---------h~~-~~~---------------~~i~r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMS------TL---------HTN-TAV---------------GAVTR 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEE------EE---------CCS-SSH---------------HHHHH
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCccc------cc---------chh-hHH---------------HHHHH
Confidence 76654 344 577777766421000000 00 000 000 01113
Q ss_pred HHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeE
Q 045902 324 LKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367 (1472)
Q Consensus 324 l~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~ill 367 (1472)
|..+|++... .. ..|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccC
Confidence 5567776532 22 3499999999 9999999999875
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.84 E-value=5.7e-10 Score=129.73 Aligned_cols=125 Identities=13% Similarity=0.077 Sum_probs=78.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCeeCCCCCCC---ceEEEEcCCCCCC-----CCCCH
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY---CGHELTEFVPQ---RTCAYISQHDLHH-----GEMTV 264 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV 264 (1472)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88876 899999 89877653211 2479999998553 68899
Q ss_pred HHHH--HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-cccccccCcc
Q 045902 265 RETL--DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI-CADIMVGNEM 341 (1472)
Q Consensus 265 ~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg~~~ 341 (1472)
|++ .|.. .. +. . |+- . +-.+. .+....++.+++.+||++ ..+....
T Consensus 238 -e~l~~~f~~-~~------~~-~--c~~-~--~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~~--- 286 (302)
T 2yv5_A 238 -REVRNYFRE-FL------RY-Q--CKY-P--DCTHT--------------NEPGCAVKEAVKNGEISCERYKSYLK--- 286 (302)
T ss_dssp -GGGGGGCGG-GH------HH-H--HHS-T--TCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHHH---
T ss_pred -HHHHHHHHH-HH------Hc-c--CCC-C--CCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHHH---
Confidence 888 3421 00 00 0 000 0 00000 001123456788888875 5565554
Q ss_pred CCCCChHHHHHHHHHH
Q 045902 342 RRGISGGQKKRVTTGE 357 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~ 357 (1472)
.|||.++|++.|||
T Consensus 287 --~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 --IIKVYLEEIKELCR 300 (302)
T ss_dssp --HTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHhc
Confidence 49999999999986
No 251
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.83 E-value=9.4e-10 Score=117.76 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=39.7
Q ss_pred hCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch
Q 045902 360 VGPAKALFMDEIST-GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE 408 (1472)
Q Consensus 360 ~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 408 (1472)
+.+|++|+||||++ ++|......+.+.+..... .++++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999985 9999999999999987654 578888888877654
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.83 E-value=1.6e-09 Score=130.24 Aligned_cols=63 Identities=8% Similarity=0.079 Sum_probs=46.8
Q ss_pred CCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEecCc------------------chHH
Q 045902 361 GPAKALFMDEISTGLDSSTT------------FQIVRFMRQMVHITDVTMIISLLQPA------------------PETY 410 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~------------~~i~~~L~~l~~~~~~tvii~~~q~~------------------~~~~ 410 (1472)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997543 56888899998888999998877611 2235
Q ss_pred hccCeEEEecCCe
Q 045902 411 DLFDDIILLSEGE 423 (1472)
Q Consensus 411 ~~fD~iilL~~G~ 423 (1472)
+.+|.++.|+.|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999887763
No 253
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.82 E-value=9.9e-09 Score=123.29 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=90.7
Q ss_pred eccc-eeEEeCCeEEEEEcCCCCChhHHHhhh--cCCCCC---CeeEEEEEEcCccC-ChhcccceeEEeccCCCCCCCC
Q 045902 906 LQDV-SGAFRPGVLTALVGVSGAGKTTLMDVL--AGRKTG---GYIEGSISISGYPK-KQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 906 L~~v-s~~i~~Ge~~al~G~nGaGKTTLl~~L--~g~~~~---~~~~G~i~i~G~~~-~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
|+.+ .+-|++|++++|+||||||||||++.| .+..+. +...+.+++++... .....
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl----------------- 229 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL----------------- 229 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-----------------
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-----------------
Confidence 4443 368999999999999999999999954 454431 11245777776542 11100
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCH-HHHHHHHHHHHHh--hCCCCccccCCCCCCCH
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg-GqrqRl~iA~aL~--~~p~il~LDEPTsgLD~ 1055 (1472)
......+.... +++++.+-+. +..+. .+.+.+..+.+++ .+|+++++||||+.+|+
T Consensus 230 -----~~~a~~~gl~~----~~vleni~~~------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 230 -----VSIAQRFGLDP----DDALNNVAYA------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp -----HHHHHHTTCCH----HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred -----HHHHHHcCCCh----HhHhhcEEEe------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00011111111 1222211110 01222 2334444444443 46999999999999996
Q ss_pred HHH------------HHHHHHHHHHhhC-CCEEEEEecCcc------------------HHHHHhhCeEEEEecC
Q 045902 1056 RAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1056 ~~~------------~~i~~~l~~l~~~-g~tvi~t~H~~~------------------~~~~~~~D~v~~l~~g 1099 (1472)
... ..+++.|++++++ |.|||+++|..+ ..+...+|.++.|.++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 433 5688888888765 999999999721 1234567888888763
No 254
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=2.3e-09 Score=127.29 Aligned_cols=162 Identities=14% Similarity=0.044 Sum_probs=84.5
Q ss_pred EEEEcCCCCChhHHHhhhcC-CCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchH
Q 045902 919 TALVGVSGAGKTTLMDVLAG-RKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM 996 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g-~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~ 996 (1472)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+... ...++.+++++|.+.+..... + .......
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC-------------CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cCCcchH
Confidence 89999999999999999999 4432 36889988876432 122455788888764321111 0 0001111
Q ss_pred HHHHHHHHcc-cccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEE
Q 045902 997 FVEEVMELVE-MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075 (1472)
Q Consensus 997 ~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tv 1075 (1472)
.+.+.++.+. ...+.+.. .+|| +..+|+++++|||++ ||+.+...+.+.+.+.. .+.++
T Consensus 108 ~~~~~i~~~~~~~~~~~~~-------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~ 167 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQD-------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRL 167 (354)
T ss_dssp HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEE
T ss_pred HHHHHHHHHHHhccccccc-------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEE
Confidence 2233333221 11111100 2465 788999999999999 99999999999998864 46899
Q ss_pred EEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHH
Q 045902 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFE 1120 (1472)
Q Consensus 1076 i~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~ 1120 (1472)
|+++|+++.-.-..-+| ..++.+.|+.. +++.++..
T Consensus 168 Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp EEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 99999976311112222 24556666643 34444444
No 255
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.82 E-value=2.9e-11 Score=144.51 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=116.2
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCC----------CCCeeEEEEEEcCccCCh----hcccce---eEEeccCCCC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRK----------TGGYIEGSISISGYPKKQ----ETFARI---SGYCEQNDIH 974 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~----------~~~~~~G~i~i~G~~~~~----~~~~~~---~gyv~Q~~~~ 974 (1472)
.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 112568999998843211 011122 2477788887
Q ss_pred CCCCCHHHHH--HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC--CCccccCCC
Q 045902 975 SPNVTIYESL--LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP--SIIFMDEPT 1050 (1472)
Q Consensus 975 ~~~lTv~e~l--~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p--~il~LDEPT 1050 (1472)
....+..|.+ .|.+.++... .++..++..+ ...+..+|++. +| +++++|||+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d-----~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ildeel 151 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD-----AIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIVDEL 151 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS-----EEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH-----HHHHHHhccc-------cceeeeecccc------------Ccchhhhhchhhh
Confidence 7777776655 4444433211 1111111111 11122355543 89 999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-hhCCCEEEEEecCccHHHHHhhCeEE-EEecCc-EEEEEcCCC
Q 045902 1051 SGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-HVIYAGPLG 1109 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l-~~~g~tvi~t~H~~~~~~~~~~D~v~-~l~~gg-~v~~~g~~~ 1109 (1472)
.++|+......++.++++ .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 999999999999999998 77788864 99865 5778899998 7865 6 677767664
No 256
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.80 E-value=5e-10 Score=130.26 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=78.6
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCChh--ccc-ceeEEeccCCCCC-----CCCCHH
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PNVTIY 981 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~~--~~~-~~~gyv~Q~~~~~-----~~lTv~ 981 (1472)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3568999999999999999999999 765 45899999 88765432 122 2579999998654 67899
Q ss_pred HHH--HHH------HHcCC-----CchHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 045902 982 ESL--LYS------AWLRL-----PKDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTIAVE 1036 (1472)
Q Consensus 982 e~l--~~~------~~l~~-----~~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~iA~a 1036 (1472)
|++ .|. +..+. .....++++++.+++.+ ..+... ..|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 443 11221 11246888999999875 455443 3699999999999874
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.78 E-value=5.4e-12 Score=137.70 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=43.2
Q ss_pred HHH-HHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1033 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1033 iA~-aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +...|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 456 788899999999999999999999999988887543 2334521 4689887764
No 258
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.74 E-value=1.8e-11 Score=140.45 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=90.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCC-CCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHD-LHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 261 (1472)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999877643221 13355555542 33444
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+++.|++.+.+..++ ....+ .+....++ .
T Consensus 106 i~~~Deid~~~~~r~--------------~~~~~--------------------------------~~~~~~~~-----~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRETG--------------------------------ASVRVVNQ-----L 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHH-----H
T ss_pred eEeeehhhhhhcccC--------------CCcch--------------------------------HHHHHHHH-----H
Confidence 455454433211000 00000 00011121 2
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEIST------------GLDSSTTFQIVRFM 387 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEpts------------gLDs~t~~~i~~~L 387 (1472)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 2349999999999999999999975 98864 23555666665543
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.72 E-value=1.1e-10 Score=128.15 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=27.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999998865
No 260
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.72 E-value=5.8e-09 Score=108.23 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=34.1
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE-EEEEEecCcch
Q 045902 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT-MIISLLQPAPE 408 (1472)
Q Consensus 360 ~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t-vii~~~q~~~~ 408 (1472)
+.+|++|++|||++ +|......+.+.+..+... +++ +|++.+.+..+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHH
Confidence 35689999999998 6665588888988887654 555 66666655433
No 261
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.71 E-value=1.7e-10 Score=136.39 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=94.7
Q ss_pred cceeeccceeEEeCC-------eEEEEEcCCCCChhHHHhhhcCCCCC--CeeEEEEEEcCccCCh---hcccceeEEec
Q 045902 902 RLQLLQDVSGAFRPG-------VLTALVGVSGAGKTTLMDVLAGRKTG--GYIEGSISISGYPKKQ---ETFARISGYCE 969 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~G-------e~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~G~~~~~---~~~~~~~gyv~ 969 (1472)
+..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++++.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 346889999999877 88999999999999999999996421 1345655555443211 11234689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCC--------CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 045902 970 QNDIHSPNVTIYESLLYSAWLRL--------PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP 1041 (1472)
Q Consensus 970 Q~~~~~~~lTv~e~l~~~~~l~~--------~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p 1041 (1472)
|.+.+.+ ++.|++........ +....+++.++.+++.. +++. ...||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9877765 78888854322211 11122333344445544 3332 236999999998655
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhhC
Q 045902 1042 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~~~~~~i~~~l~~l~~~ 1071 (1472)
.+||+.+...+.+.|++.++.
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHH
Confidence 788888899999999988643
No 262
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=8e-09 Score=122.68 Aligned_cols=136 Identities=20% Similarity=0.193 Sum_probs=69.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC-CCCCCCCceeEEEEcCeeCCCCC-CCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCc
Q 045902 202 TLLLGPPGSGKTTLLQALSG-KSDKSLRVSGRVTYCGHELTEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 279 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G-~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 279 (1472)
++|.||||+|||||+++|+| ...++ .|.+.++|.+..... .+..+++++|.+.+.-... + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 56665 799999987654321 1345778887653311100 0 00000
Q ss_pred hhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHH
Q 045902 280 RFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359 (1472)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL 359 (1472)
+ ..+ ...++.+......+..+ .+|| +
T Consensus 106 ~-------------------~~~------------------~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------IVI------------------QELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------HHH------------------HHHHHHHTTTTC---------------------------
T ss_pred h-------------------HHH------------------HHHHHHHHHhccccccc------cccc-----------c
Confidence 0 000 01111111000001000 2566 7
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 360 ~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
.++|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 78999999999999 99999999999998753 35677887777653
No 263
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=1.9e-11 Score=145.94 Aligned_cols=168 Identities=13% Similarity=0.145 Sum_probs=111.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCC------------CCCCCCceeEEEEcCeeCCC----CCCCceE---EEEcCC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGK------------SDKSLRVSGRVTYCGHELTE----FVPQRTC---AYISQH 255 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~------------~~~~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~ 255 (1472)
.+++|..++|+|+||||||||+|+|+|. .+|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 2333 7999998844321 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccc
Q 045902 256 DLHHGEMTVRETL--DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA 333 (1472)
Q Consensus 256 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 333 (1472)
+-+...++..|++ .|-+.++.. +.++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777766665544 221111100 0001111111
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEecCcchHH
Q 045902 334 DIMVGNEMRRGISGGQKKRVTTGEMLVGPA--KALFMDEISTGLDSSTTFQIVRFMRQM-VHITDVTMIISLLQPAPETY 410 (1472)
Q Consensus 334 dt~vg~~~~~gLSGGqrkRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l-~~~~~~tvii~~~q~~~~~~ 410 (1472)
++..+..+||+. +| +++++|||+.++|.......++.++.. .+ .+.|++ .|-..++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccHHHHH
Confidence 012223366653 88 999999999999999999999988887 43 455543 34456778
Q ss_pred hccCeEE-EecCC-eEEEecChh
Q 045902 411 DLFDDII-LLSEG-EIVYQGPRE 431 (1472)
Q Consensus 411 ~~fD~ii-lL~~G-~iv~~G~~~ 431 (1472)
+++|++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 8999999 99999 888777643
No 264
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.69 E-value=1.6e-11 Score=140.95 Aligned_cols=129 Identities=18% Similarity=0.154 Sum_probs=86.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh---cccceeEEeccCC-CCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE---TFARISGYCEQND-IHSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~---~~~~~~gyv~Q~~-~~~~~ 977 (1472)
+..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.+.... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 99999999999999999999754 26899999765321 2234466777753 34455
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 978 VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+++.|++...+..+.. ...+ ......+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 106 i~~~Deid~~~~~r~~--~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTCC-----------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhhcccCC--Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 5655555432111110 0000 0112223322 359999999999999999999985 98864
No 265
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.67 E-value=5.3e-08 Score=109.09 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=47.1
Q ss_pred HHHHHHHh--hCCCCccccCCCCCC--CHHHHHHHHHHHHHHh-hCCCEEEEEecCccHH-------HHHhhCeEEEEec
Q 045902 1031 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1098 (1472)
Q Consensus 1031 l~iA~aL~--~~p~il~LDEPTsgL--D~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~-------~~~~~D~v~~l~~ 1098 (1472)
...++.++ .+|+++++|||++.+ |+.....++..+.+++ +.|.|||+++|..... +.+.+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 6544455555555554 5699999999986531 3567899999974
No 266
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.65 E-value=1.4e-10 Score=136.96 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=96.5
Q ss_pred ceeeeceeeEEeCC-------eEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEEcCeeCCCC---CCCceEEEEcC
Q 045902 186 LEILHDVSGIVKPS-------RMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEF---VPQRTCAYISQ 254 (1472)
Q Consensus 186 ~~iL~~vs~~i~~G-------e~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv~Q 254 (1472)
..++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35788888888776 8899999999999999999999863221 1356665555443221 12356899999
Q ss_pred CCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc
Q 045902 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD 334 (1472)
Q Consensus 255 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 334 (1472)
.+.+.+ ++.|++.......... .. .... +. ...++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~----i~--~~~~-------~~-----------------~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQID----IM--IGKG-------PS-----------------AKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhcccc----ee--eccC-------cc-----------------cccccccCCCeEEEE-ec
Confidence 877665 7888874432111000 00 0000 00 000112233344433 45
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 395 (1472)
+.++ .||+|+|+|+.++ .+||+.+..++.+.|++.++..+
T Consensus 158 ~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 158 TRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp SCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 5554 4999999998554 78999999999999998876544
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.64 E-value=4.3e-10 Score=131.22 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=86.6
Q ss_pred eeeccceeEE-------------------eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCChhcc
Q 045902 904 QLLQDVSGAF-------------------RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQETF 961 (1472)
Q Consensus 904 ~iL~~vs~~i-------------------~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~~~~ 961 (1472)
++++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 4788888877 89999999999999999999999996541123789999 98875432 2
Q ss_pred cceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 045902 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP 1041 (1472)
Q Consensus 962 ~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p 1041 (1472)
++.+|++ |...+++.+|+.+++.+...++.... .+. ....+ .+.+ +|+..+.+.+.+|
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------~i~-~P~~~----------~~~~--~~~~~~~~~~~~~ 185 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------NVT-APVYS----------HLIY--DVIPDGDKTVVQP 185 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------CEE-ECCEE----------TTTT--EECTTCCEEEC-C
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------cee-ccccc----------cccc--CcccccceecCCC
Confidence 3457888 77777788999999987655442211 000 00011 1111 2222222345678
Q ss_pred CCccccCCCCCCCH
Q 045902 1042 SIIFMDEPTSGLDA 1055 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~ 1055 (1472)
+++++|.|....|.
T Consensus 186 ~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 186 DILILEGLNVLQSG 199 (308)
T ss_dssp CEEEEECTTTTCCG
T ss_pred CEEEECchhhCCCc
Confidence 99999999998874
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.64 E-value=1.3e-11 Score=134.80 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=43.1
Q ss_pred HHH-HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 355 TGE-MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 355 ia~-aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.... .| . . ..+|.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~-----a~--~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMES-----SK--E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTG-----GG--S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----hh--c--c-CCceEEEECCC
Confidence 445 678889999999999999999999999999887653211 12 1 1 57899988764
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.63 E-value=3.9e-09 Score=122.10 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=65.3
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCCh-hcccce-eEEeccCCCCCC----CCCHH
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQ-ETFARI-SGYCEQNDIHSP----NVTIY 981 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~-~~~~~~-~gyv~Q~~~~~~----~lTv~ 981 (1472)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|..... ....+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677899999999999999999999999765 45899998 7765432 122222 799999987765 6899
Q ss_pred HHHH--HHH---H---cC--C-----CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 982 ESLL--YSA---W---LR--L-----PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 982 e~l~--~~~---~---l~--~-----~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
|++. |.. . ++ . .....++++++.+++.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 321 1 11 1 12246788899988876443322 146777776
No 270
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.63 E-value=9.4e-09 Score=126.48 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=106.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-EEEEcCccCChhccc-ce----eEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-SISISGYPKKQETFA-RI----SGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~G~~~~~~~~~-~~----~gyv~Q~~~~~~ 976 (1472)
...|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+......... |. .++-.+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHTCCHH------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcCCCHH------
Confidence 3468889889999999999999999999999999874321 012 344433332221111 11 111111
Q ss_pred CCCHHHHHHHHHHcCCCch--HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKD--MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~--~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsg 1052 (1472)
.+. .. +...+ ..+.+.++.++..++. +..+ .++|.+|.+ ..++.++ .+|+++++|+++..
T Consensus 262 ------~l~-~g--~l~~~~~~~~~~a~~~l~~~~l~---i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 262 ------NLR-TG--KLTPEDWGKLTMAMGSLSNAGIY---IDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp ------HHH-TS--CCCHHHHHHHHHHHHHHHSSCEE---EECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred ------HHh-cC--CCCHHHHHHHHHHHHHHhcCCEE---EECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 010 00 11111 1233344444333221 1111 368999987 5677776 68999999999997
Q ss_pred CCH--------HHHHHHHHHHHHHhhC-CCEEEEEec---------C--ccH-------HHHHhhCeEEEEecC
Q 045902 1053 LDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1053 LD~--------~~~~~i~~~l~~l~~~-g~tvi~t~H---------~--~~~-------~~~~~~D~v~~l~~g 1099 (1472)
.+. .....+.+.|+.++++ |.+||+++| + |.. .+.+.+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 742 3346788888888755 999999999 2 431 356679999999864
No 271
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.62 E-value=9.2e-11 Score=131.04 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=55.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhc-CCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA-GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
.+..+++|+++++|++++|+||||||||||+++|+ |..++ ..+.+.+...+..... ....+|.+++...+..+++.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~--~~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN--IVKSVSVTTRAARKGE-KEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C--EEECCCEESSCCCTTC-CBTTTBEECCHHHHHHHHHT
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC--cccccccCCCCCCccc-cCCCeEEEecHHHhhhhhhc
Confidence 35789999999999999999999999999999999 97542 1222222221111110 11223555543322222222
Q ss_pred HHHHHH----HHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH-HHH-HHHhhCCCCccccCCCCCCCH
Q 045902 982 ESLLYS----AWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL-TIA-VELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 982 e~l~~~----~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl-~iA-~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
+++... ..........++++++.-.. -+.+. + ..+ ...-++++ .-+ ..++..|+...+||++.+.|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-vild~----~-~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~ 163 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGVS-TLLVI----D-WQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA 163 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHHTCE-EEEEC----C-HHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC------
T ss_pred CceehhhhhccccCCCCHHHHHHHHHcCCe-EEEEc----C-HHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC
Confidence 221100 00000011224444433111 11110 0 000 11123333 111 233567889999999999998
Q ss_pred HHHHHHHHHHHHH
Q 045902 1056 RAAAIVMRTVRNT 1068 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l 1068 (1472)
.+...+.+.|++.
T Consensus 164 ~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 164 DDSEVVEARLKGA 176 (231)
T ss_dssp --------CHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8887777666654
No 272
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=4.1e-09 Score=122.56 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=51.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCeeCCCCCC---CceEEEEcCCCC-----------
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY---CGHELTEFVP---QRTCAYISQHDL----------- 257 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 257 (1472)
.+.+|++++|+||||||||||||+|+|...++ +|+|.+ +|++++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999999887 899999 8988765322 135799999974
Q ss_pred -----CCCCCCHHHHHHHh
Q 045902 258 -----HHGEMTVRETLDFS 271 (1472)
Q Consensus 258 -----~~~~lTV~E~l~f~ 271 (1472)
++|++|+ ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788888 888775
No 273
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=9.1e-09 Score=119.59 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=64.1
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCChh--cc-cceeEEeccCCC------------
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQE--TF-ARISGYCEQNDI------------ 973 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~~--~~-~~~~gyv~Q~~~------------ 973 (1472)
.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|.+.... .. .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 445799999999999999999999999876 35899999 88765321 11 134799999874
Q ss_pred ----CCCCCCHHHHHHHHHHcC-CCchHHHHHHHHHcccc-cccccc
Q 045902 974 ----HSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMK-ALRNSL 1014 (1472)
Q Consensus 974 ----~~~~lTv~e~l~~~~~l~-~~~~~~~~~v~~~l~l~-~~~~~~ 1014 (1472)
++|++|+ ||+.|..... ......++++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4788999 9988753221 12235688889988884 444443
No 274
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=1.4e-08 Score=117.50 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=44.3
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCeeCCCCCCC-ce-EEEEcCCCCCCC----CCCH
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY---CGHELTEFVPQ-RT-CAYISQHDLHHG----EMTV 264 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 264 (1472)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+..... +. .+|+.|++-+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999998876 899998 88776543211 12 699999987665 6899
Q ss_pred HHHHH
Q 045902 265 RETLD 269 (1472)
Q Consensus 265 ~E~l~ 269 (1472)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.53 E-value=5.5e-08 Score=112.82 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHh
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFS 271 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 271 (1472)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45557899999999999999999999999988664 577877654421 00 001111
Q ss_pred hhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHH
Q 045902 272 GRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKK 351 (1472)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrk 351 (1472)
....+.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11223445432 1236899999
Q ss_pred HH---HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 352 RV---TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 352 Rv---sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
++ ++++++..+|+++++|||.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 4555667776766544
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.50 E-value=3.1e-08 Score=114.85 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=74.1
Q ss_pred ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHH
Q 045902 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSA 988 (1472)
Q Consensus 909 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~ 988 (1472)
+++..++|++++|+||||+||||++..|++.... ..|.|.+.+.+.... + ..|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~------~-------------a~eqL---- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA------A-------------AIEQL---- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH------H-------------HHHHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH------H-------------HHHHH----
Confidence 4556789999999999999999999999996542 235666655442110 0 11111
Q ss_pred HcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH---HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHH
Q 045902 989 WLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065 (1472)
Q Consensus 989 ~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl---~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l 1065 (1472)
+...+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ......+++.+
T Consensus 152 ----------~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL 208 (306)
T 1vma_A 152 ----------KIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEEL 208 (306)
T ss_dssp ----------HHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHH
T ss_pred ----------HHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHH
Confidence 12233334321 124689999999 89999999999999999974 23344455555
Q ss_pred HHH
Q 045902 1066 RNT 1068 (1472)
Q Consensus 1066 ~~l 1068 (1472)
+++
T Consensus 209 ~~l 211 (306)
T 1vma_A 209 RKV 211 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 277
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.48 E-value=1.5e-07 Score=108.82 Aligned_cols=118 Identities=22% Similarity=0.133 Sum_probs=80.9
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+...... . +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------~-------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------R-------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------H-------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------H-------------HHH--
Confidence 678888 9999999999999999999999996542 24677777655321100 0 111
Q ss_pred HHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC-CCCCCHHHHHHHHHHH
Q 045902 987 SAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAIVMRTV 1065 (1472)
Q Consensus 987 ~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP-TsgLD~~~~~~i~~~l 1065 (1472)
..+.+..++..+.. + ..-+-.+.+|.+|+.+...+++++++||| ++|+|......+.+..
T Consensus 146 ------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~ 206 (295)
T 1ls1_A 146 ------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLK 206 (295)
T ss_dssp ------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred ------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHh
Confidence 01122233322211 0 11344566788999988899999999999 9999998888887777
Q ss_pred HHH
Q 045902 1066 RNT 1068 (1472)
Q Consensus 1066 ~~l 1068 (1472)
+.+
T Consensus 207 ~~~ 209 (295)
T 1ls1_A 207 EVL 209 (295)
T ss_dssp HHH
T ss_pred hhc
Confidence 665
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.48 E-value=5.2e-07 Score=100.93 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch-------HHhccCeEEEecC
Q 045902 361 GPAKALFMDEISTGL--DSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE-------TYDLFDDIILLSE 421 (1472)
Q Consensus 361 ~~p~illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~-------~~~~fD~iilL~~ 421 (1472)
.+|+++++|+|++.+ |.....+++..|.++++..+.|++++.|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 665667777777777777788988877655431 4567899999864
No 279
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.46 E-value=2.2e-07 Score=109.86 Aligned_cols=147 Identities=22% Similarity=0.288 Sum_probs=83.3
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCCC-CCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-GGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW 989 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 989 (1472)
+-+++|+++.|.||||+|||||+..++.... .+ | .+.|+.-+....+ . +...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~----------------~vlyi~~E~~~~~-------~-~a~~ 108 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---G----------------IAAFIDAEHALDP-------E-YAKK 108 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---C----------------CEEEEESSCCCCH-------H-HHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---C----------------eEEEEECCCCcCH-------H-HHHH
Confidence 4799999999999999999999888875321 11 1 1233333221100 0 1111
Q ss_pred cCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCccccCCCCCC----------CH--
Q 045902 990 LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVAN--PSIIFMDEPTSGL----------DA-- 1055 (1472)
Q Consensus 990 l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~--p~il~LDEPTsgL----------D~-- 1055 (1472)
+..+. .+-.+-.+ .+.. +-+.++++++.+ |+++++|||++.+ |+
T Consensus 109 lG~~~----------------~~l~i~~~----~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 109 LGVDT----------------DSLLVSQP----DTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp TTCCG----------------GGCEEECC----SSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred cCCCH----------------HHeEEecC----CCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 11110 00011111 2333 345678888755 9999999999998 33
Q ss_pred -HHHHHHHHHHHHH----hhCCCEEEEEecCccH---------------HHHHhhCeEEEEecCcEEEEEcC
Q 045902 1056 -RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI---------------DIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1056 -~~~~~i~~~l~~l----~~~g~tvi~t~H~~~~---------------~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
..++.+.+.++++ .+.|+|||++.|..+. .+...+|.++.+.+ ++++..|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 2223444555554 3459999999996431 13456788888875 34443343
No 280
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.45 E-value=2.9e-07 Score=113.20 Aligned_cols=184 Identities=13% Similarity=0.129 Sum_probs=109.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
....|+++.+-+++|++++|.|+||+|||||+..|++...+. .| ..+.|++- +++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~------E~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSL------EMSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEES------SSCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEEC------CCCH
Confidence 456799999899999999999999999999999999754321 12 12445543 3444
Q ss_pred HHHHHHh-hhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 265 RETLDFS-GRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 265 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
.+...-. +...+... + .+ ..+...+.+...+.+ .++.++..+. .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~--~---~l-----~~g~l~~~~~~~~~~---------------a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA--Q---NL-----RTGKLTPEDWGKLTM---------------AMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH--H---HH-----HTSCCCHHHHHHHHH---------------HHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH--H---HH-----hcCCCCHHHHHHHHH---------------HHHHHhcCCE---EEEC--CC
Confidence 3332110 00001100 0 00 001111111111111 2222322211 1111 23
Q ss_pred CCChHHHHHHHHHHHHh--CCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEe---------c
Q 045902 344 GISGGQKKRVTTGEMLV--GPAKALFMDEISTGLDS--------STTFQIVRFMRQMVHITDVTMIISLL---------Q 404 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~--~~p~illLDEptsgLDs--------~t~~~i~~~L~~l~~~~~~tvii~~~---------q 404 (1472)
++|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++..+.++|++.| .
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 58999987 5666666 68999999999998743 23366788899999888888888765 1
Q ss_pred --Cc-------chHHhccCeEEEecCCeE
Q 045902 405 --PA-------PETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 405 --~~-------~~~~~~fD~iilL~~G~i 424 (1472)
|. ..+...+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 32 146678999999987654
No 281
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.44 E-value=3e-08 Score=121.11 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=49.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF 243 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~ 243 (1472)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 3579999999999 999999999999999999999999887 89999999877543
No 282
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.44 E-value=8.7e-09 Score=120.17 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=58.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEE---cCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHh
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTY---CGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFS 271 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 271 (1472)
++|++++|+||||||||||+++|+|.+. ++ +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999876 65 899999 88764221 12346788 777778889999999876
Q ss_pred hhc
Q 045902 272 GRC 274 (1472)
Q Consensus 272 ~~~ 274 (1472)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 283
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.40 E-value=1.8e-08 Score=128.28 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=98.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCC---------
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHD--------- 256 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d--------- 256 (1472)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... ..++|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999998775 2388999887766543 3588888742
Q ss_pred -------------CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHH
Q 045902 257 -------------LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYV 323 (1472)
Q Consensus 257 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 323 (1472)
..+..+++.+|+... .+.. .+.+.+ ...... .
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~--------------------~~~~~v-----------~~~~~~---~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGR--------------------TKAPFI-----------DATGAH---A 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTC--------------------SSCCEE-----------ECTTCC---H
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccC--------------------CCCCEE-----------EcCCCC---H
Confidence 011111111111000 0000 000000 000000 1
Q ss_pred HHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 045902 324 LKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ 389 (1472)
Q Consensus 324 l~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 389 (1472)
-+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12222211111 1224699999999999999999999999999998 888877777776653
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.38 E-value=3.3e-07 Score=105.94 Aligned_cols=139 Identities=15% Similarity=0.125 Sum_probs=82.4
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP 993 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~ 993 (1472)
++|++++|+||||+||||++..|++.... ..| +.+.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 47899999999999999999999986531 123 13456666542 3455565543221
Q ss_pred chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh---h
Q 045902 994 KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV---D 1070 (1472)
Q Consensus 994 ~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~---~ 1070 (1472)
..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-+. .
T Consensus 159 ----------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~ 213 (296)
T 2px0_A 159 ----------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESS 213 (296)
T ss_dssp ----------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTT
T ss_pred ----------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCC
Confidence 1121100 01222 33344555 45999999999 99999876655554444332 1
Q ss_pred CCCEEEE-EecCccHHHHHhhCeEEEEecCcEE
Q 045902 1071 TGRTVVC-TIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1071 ~g~tvi~-t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
.+.++|+ ++|... ++.+.+|++-.+..+|.+
T Consensus 214 ~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 214 IQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp EEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEE
T ss_pred CeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEE
Confidence 2334444 478753 566667766655554433
No 285
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.37 E-value=9.6e-09 Score=130.87 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=100.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCC-------
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI------- 973 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~------- 973 (1472)
+...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 3456899999999999999999999999999999999976532 24888888876542 2345788876431
Q ss_pred ---------------CCCCCCHHHHHHHHHHcCCCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHH
Q 045902 974 ---------------HSPNVTIYESLLYSAWLRLPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAV 1035 (1472)
Q Consensus 974 ---------------~~~~lTv~e~l~~~~~l~~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~ 1035 (1472)
.+..+++.+|+.....-..+.. .......++++........ ..++|+|++|++..++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGGGGEECCH
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCccccccccccCce
Confidence 1111122111110000000000 0000112222322211111 1369999999999999
Q ss_pred HHhhCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 045902 1036 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067 (1472)
Q Consensus 1036 aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~ 1067 (1472)
...+++.+|||||... |++.....+.+.|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999998 899888888888874
No 286
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.33 E-value=4.8e-08 Score=105.40 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHH
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l 1068 (1472)
+...+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888653
No 287
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.30 E-value=1.1e-09 Score=125.85 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=81.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCC-CCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDI-HSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~-~~~~ 977 (1472)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ....+.+++++|... ..+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 456899999999999 89999999999999999999654 5788888865321 112234566677643 4566
Q ss_pred CCHHHHHHHHHHcCCC----chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 978 VTIYESLLYSAWLRLP----KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~----~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
+++.|++......+.. .....++.+.. .. ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~---------ll-----~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ---------LL-----VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHH---------HH-----HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHH---------HH-----HHHhCCCCCCCEEEEEecCCchh
Confidence 7777777432221110 01111111111 11 24899999999999999999987
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.30 E-value=2.9e-08 Score=108.17 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=48.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---CCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---PQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ..+.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56678999999999999999999999999863 2455554443322 1345789999877666666665543
No 289
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.30 E-value=7.2e-08 Score=117.73 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=46.6
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
..+|+|||++|++ +++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 3579999999999 99999999999999999999998763 4799999998753
No 290
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.28 E-value=9.3e-07 Score=102.18 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=83.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 276 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 276 (1472)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999987643 35 13555555432 2355555543211
Q ss_pred CCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHH
Q 045902 277 VGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356 (1472)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia 356 (1472)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122110 0 012 233355565
Q ss_pred HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH--hCCcEEEEEEecCcchHHhccCeEEEecCCeEEEe
Q 045902 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH--ITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427 (1472)
Q Consensus 357 ~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~--~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~ 427 (1472)
+ +.+++++++| |.|+|+.....+.+..+-+.. ..+.++|+...+...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 999998776554443332211 11223344223334566666676656666777653
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.27 E-value=1.3e-06 Score=101.04 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=79.7
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHHH
Confidence 678887 99999999999999999999999987654 6788887654311 0 000 0000
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
.+.+..|++.... + .+-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112233332110 0 0123345
Q ss_pred HHHHHHHHHHhCCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 045902 350 KKRVTTGEMLVGPAKALFMDEI-STGLDSSTTFQIVRFMRQM 390 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEp-tsgLDs~t~~~i~~~L~~l 390 (1472)
.+|.+++++...+++++++||| +.|+|.....++.+..+.+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988889999999999 9999988877777776654
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.27 E-value=3.9e-08 Score=107.11 Aligned_cols=64 Identities=23% Similarity=0.185 Sum_probs=41.9
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHH
Confidence 56788999999999999999999999999753 34555543221 112345688888754443333
No 293
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.23 E-value=2.6e-08 Score=122.44 Aligned_cols=167 Identities=11% Similarity=0.066 Sum_probs=91.4
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcC--CCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC-CC-CCHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS-PN-VTIYES 983 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~-~~-lTv~e~ 983 (1472)
.+++.+..+.-++|.|++||||||++++|.. .... ..|++.+.+.+.+...+.. | ..-+.+. +- ..+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 4677788899999999999999999999875 2221 1245555554433222211 0 0001110 00 112222
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH----------HHHHHHhhCCC-CccccCCCCC
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL----------TIAVELVANPS-IIFMDEPTSG 1052 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl----------~iA~aL~~~p~-il~LDEPTsg 1052 (1472)
...-.++.... +...+.++..|..++.+..... ...+|+||+|+. .+++++...|. ++++||++.-
T Consensus 233 ~~~L~~~~~Em-erR~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 233 ANALRWCVNEM-ERRYKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 21111111000 1223556666665554321000 013677877652 35566677898 6899999999
Q ss_pred CCHHHHHHHHHHHHHHhh----CCCEEEEEecCccH
Q 045902 1053 LDARAAAIVMRTVRNTVD----TGRTVVCTIHQPSI 1084 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~----~g~tvi~t~H~~~~ 1084 (1472)
+|.. ...+.+.|.++++ .|.++|+++|+|+.
T Consensus 310 l~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 310 MMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred Hhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 8843 3445555555543 27799999999983
No 294
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.23 E-value=7.1e-07 Score=105.58 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=49.4
Q ss_pred HHHHHHHHhC--CCcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhCCcEEEEEEecCcc------
Q 045902 352 RVTTGEMLVG--PAKALFMDEISTGL----------DS---STTFQIVRFMRQM---VHITDVTMIISLLQPAP------ 407 (1472)
Q Consensus 352 Rvsia~aL~~--~p~illLDEptsgL----------Ds---~t~~~i~~~L~~l---~~~~~~tvii~~~q~~~------ 407 (1472)
-+.++++++. +|+++++||+++.+ |+ ..+..+.+.++++ ++..+.++|++-|....
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 3557777765 49999999999998 33 2222344444444 46678888876653321
Q ss_pred ---------hHHhccCeEEEecCCeEEEecC
Q 045902 408 ---------ETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 408 ---------~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
.+...+|.++.++.++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1446788888888777655443
No 295
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.22 E-value=2e-09 Score=121.83 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=81.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCC-CCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDI-HSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~-~~~~ 977 (1472)
+..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 346899999999999 89999999999999999998654 5788888865321 111233556666542 4566
Q ss_pred CCHHHHHHHHHHcCCC----chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC
Q 045902 978 VTIYESLLYSAWLRLP----KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1049 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~----~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP 1049 (1472)
+++.|++......+.. ......+.+..+ . ..|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l---------l-----~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL---------L-----VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHH---------H-----HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHH---------H-----HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777776432211110 011111111111 1 24789999999999999999987 4543
No 296
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.20 E-value=1.6e-07 Score=115.43 Aligned_cols=166 Identities=12% Similarity=0.100 Sum_probs=91.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC--CCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCC--CHHH
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEM--TVRE 266 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G--~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 266 (1472)
.+++.+..+..++|.|++||||||+|++|.. ....+ .|+|.+.+.+.+..... .-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--------hhccCCcccceeec
Confidence 3677788899999999999999999999875 22222 35666655554431110 00011111 1222
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc--ccccCccCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD--IMVGNEMRRG 344 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d--t~vg~~~~~g 344 (1472)
+...+.+.. .....++.+| ..+++..|+.+..+ ..+. ..
T Consensus 228 d~~~a~~~L-----~~~~~EmerR------------------------------~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEMERR------------------------------YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHHHH------------------------------HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHH-----HHHHHHHHHH------------------------------HHHHHHcCCccHHHHHHHHH----HH
Confidence 222211100 0011122111 12455556554322 1111 23
Q ss_pred CChHHHHHH----------HHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHH---HHhCCcEEEEEEecCcc
Q 045902 345 ISGGQKKRV----------TTGEMLVGPAK-ALFMDEISTGLDSSTTFQIVRFMRQM---VHITDVTMIISLLQPAP 407 (1472)
Q Consensus 345 LSGGqrkRv----------sia~aL~~~p~-illLDEptsgLDs~t~~~i~~~L~~l---~~~~~~tvii~~~q~~~ 407 (1472)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++ .+..|.++|++.+.|..
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 788988763 24556677887 89999999998843 34455555544 34447789988888873
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.19 E-value=2.9e-09 Score=122.31 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=52.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCC-CCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHD-LHHGEM 262 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 262 (1472)
.+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 99999999999999999999874 5889888866432211 12234444442 133444
Q ss_pred CHHHHH
Q 045902 263 TVRETL 268 (1472)
Q Consensus 263 TV~E~l 268 (1472)
++.|++
T Consensus 136 ~~iDei 141 (278)
T 1iy2_A 136 VFIDEI 141 (278)
T ss_dssp EEEETH
T ss_pred Eehhhh
Confidence 555555
No 298
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.14 E-value=2.7e-07 Score=100.08 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~ 1069 (1472)
...|++|+.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999888887653
No 299
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.13 E-value=4.6e-09 Score=118.87 Aligned_cols=47 Identities=32% Similarity=0.618 Sum_probs=41.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 240 (1472)
.+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 5789999999999 99999999999999999999864 58888887654
No 300
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.06 E-value=2.6e-06 Score=104.35 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=76.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
..++++++.+++| +.|.||+|+|||||.++|++..... -+.+++.+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~--------------------------- 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDF--------------------------- 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGT---------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHH---------------------------
Confidence 4567788888888 7899999999999999999843210 011111000
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC----------CCCC
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP----------TSGL 1053 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP----------TsgL 1053 (1472)
.+..+| .+++++|-.++.+....|.|||+||+ ++|.
T Consensus 86 ---------------------------~~~~~g-------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~ 131 (476)
T 2ce7_A 86 ---------------------------VELFVG-------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131 (476)
T ss_dssp ---------------------------TTCCTT-------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred ---------------------------HHHHhc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence 000011 26788888999999999999999999 4477
Q ss_pred CHHHHHHHHHHHHHHh----hCCCEEEEEecCcc
Q 045902 1054 DARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~----~~g~tvi~t~H~~~ 1083 (1472)
|......+.+++..+- ..+..||+++|+|+
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 7777777777777663 34778999999975
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.04 E-value=1e-06 Score=98.14 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=23.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHh-CCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALS-GKSDK 225 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~-G~~~~ 225 (1472)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98753
No 302
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.03 E-value=4.4e-08 Score=116.61 Aligned_cols=140 Identities=11% Similarity=0.037 Sum_probs=80.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCC-CCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIH-SPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~-~~~lTv~ 981 (1472)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+...+.+. ..+...+|+++|...+ +.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999853 35555422221 1112235677776532 2333321
Q ss_pred HHHHHHHHcCCCch----HHHHHHHH---Hccccc-cc---ccccC----CCCCCCCCHHHHHHHHHHHHHhhCCCCcc-
Q 045902 982 ESLLYSAWLRLPKD----MFVEEVME---LVEMKA-LR---NSLVG----LPGVDGLSTEQRKRLTIAVELVANPSIIF- 1045 (1472)
Q Consensus 982 e~l~~~~~l~~~~~----~~~~~v~~---~l~l~~-~~---~~~~~----~~~~~~LSgGqrqRl~iA~aL~~~p~il~- 1045 (1472)
..+. ..++.... ..+...++ .+.+.. .. +.+.. ......+++|+++|+..+.+++.+|++++
T Consensus 229 ~~~~--r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 229 GGES--RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTT--TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHH--hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 1110 00000000 11122221 000110 00 10000 00123588999999999888899999876
Q ss_pred ccCCCC
Q 045902 1046 MDEPTS 1051 (1472)
Q Consensus 1046 LDEPTs 1051 (1472)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 999997
No 303
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.03 E-value=1.9e-06 Score=92.86 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ 389 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 389 (1472)
.+++.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
No 304
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.00 E-value=1.6e-07 Score=103.98 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=39.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-----------CceEEEEcCC
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-----------QRTCAYISQH 255 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-----------~~~~~yv~Q~ 255 (1472)
++.+.+ ++++|+|||||||||||++|+|.+.++ +|+|.++|.++....+ ++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999999887 8999999987732211 2457888873
No 305
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.99 E-value=1.8e-06 Score=101.87 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=48.7
Q ss_pred eeccce--eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEE-EEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 905 LLQDVS--GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGS-ISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 905 iL~~vs--~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~-i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
-|+.+- +-+++|+++.|.||||+|||||+..+++.... ..|. +.+++.......+.+.+|+.+|+..+....++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 344443 47999999999999999999999999875321 1233 466665433223344556666554444444554
Q ss_pred HHH
Q 045902 982 ESL 984 (1472)
Q Consensus 982 e~l 984 (1472)
+.+
T Consensus 126 ~~l 128 (356)
T 3hr8_A 126 QAL 128 (356)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 306
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.95 E-value=5.1e-06 Score=98.83 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-------CC-CceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhh
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDK-------SL-RVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 272 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~-------~~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 272 (1472)
.++|+|+||||||||++.|+|.... +. ..+|.|.++|.++. ...++|++.+.+...-+ ..+.++....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHHHHHH
Confidence 4899999999999999999997531 00 24689999886542 11234554442211100 0111211110
Q ss_pred hccCCCchhHHHHHhhHHHHhcCCCCChh--HHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHH
Q 045902 273 RCLGVGTRFELLAELSRREKDAGIKPDPE--IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQK 350 (1472)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqr 350 (1472)
.....-.-. + . .++. .+... ..+..+++.+++.+..-..|+|. ..-+|+|++
T Consensus 257 ~aD~il~Vv-----------D--~-s~~~~~~~~~~-----------~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~ 310 (364)
T 2qtf_A 257 YSDALILVI-----------D--S-TFSENLLIETL-----------QSSFEILREIGVSGKPILVTLNK-IDKINGDLY 310 (364)
T ss_dssp GSSEEEEEE-----------E--T-TSCHHHHHHHH-----------HHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHH
T ss_pred hCCEEEEEE-----------E--C-CCCcchHHHHH-----------HHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHH
Confidence 000000000 0 0 0011 11100 01245677777765543444543 334788888
Q ss_pred HHHHHH----HHH-hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 351 KRVTTG----EML-VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 351 kRvsia----~aL-~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
+|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 311 ~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 311 KKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 988877 555 434444 89999999999999999887654
No 307
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.93 E-value=1.3e-05 Score=94.62 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=28.6
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
|=+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999986543
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.90 E-value=1.7e-05 Score=97.18 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEecC
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEI----------STGLDSSTTFQIVRFMRQMV---HITDVTMIISLLQP 405 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEp----------tsgLDs~t~~~i~~~L~~l~---~~~~~tvii~~~q~ 405 (1472)
|+++.|..++++....|.|||+||+ +.|.|......+.+.|..+- ...+..+|.+.+.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 34677766666666666553 22355666666655
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.88 E-value=7.6e-07 Score=96.83 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=39.2
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh--cccceeEEeccCC
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE--TFARISGYCEQND 972 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~--~~~~~~gyv~Q~~ 972 (1472)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 3556789999999999999999999999854 6788888765321 1122357777753
No 310
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.85 E-value=3.6e-07 Score=101.25 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=39.0
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----------hcccceeEEeccC
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----------ETFARISGYCEQN 971 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----------~~~~~~~gyv~Q~ 971 (1472)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999997763 47899999876521 1124557888874
No 311
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.83 E-value=1.4e-06 Score=103.78 Aligned_cols=141 Identities=15% Similarity=0.152 Sum_probs=80.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCC---------CeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH---HHH
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTG---------GYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE---SLL 985 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~---------~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e---~l~ 985 (1472)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+. ..+.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHHHHHHHHHH
Confidence 4999999999999999999996431 13578999988543 12233455544221 11111 111
Q ss_pred HHH--H--c-----CCCc---hH---HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH----HHH-hhCCCCcc
Q 045902 986 YSA--W--L-----RLPK---DM---FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA----VEL-VANPSIIF 1045 (1472)
Q Consensus 986 ~~~--~--l-----~~~~---~~---~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA----~aL-~~~p~il~ 1045 (1472)
... . + ..+. .. .+.++++.+++.+..--++.+. ...+|+++++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 000 0 0 0111 11 1234555555443321111211 235788888888887 444 333444
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhh
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVD 1070 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~ 1070 (1472)
+|||++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999888654
No 312
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.81 E-value=1.8e-05 Score=92.56 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=89.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
...-|+.+.+-++||+++.|.|+||+|||||+.-++...... . ..+.|++- +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g----------------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---D----------------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---T----------------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---C----------------CeEEEEeC------CCCH
Confidence 455688888889999999999999999999998887643211 1 23455543 4554
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
.+... | +. ... .++ ..+.+. + | .
T Consensus 87 ~ql~~---R---------ll----s~~--~~v----------------------~~~~l~---------~---g-----~ 109 (338)
T 4a1f_A 87 EQLAL---R---------AL----SDL--TSI----------------------NMHDLE---------S---G-----R 109 (338)
T ss_dssp HHHHH---H---------HH----HHH--HCC----------------------CHHHHH---------H---T-----C
T ss_pred HHHHH---H---------HH----HHh--hCC----------------------CHHHHh---------c---C-----C
Confidence 44331 0 00 000 000 001110 0 2 3
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCcchHHhccCeEEEecC
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHIT-DVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
||++|.+|++.|...+.++++++.|+|... ..+|...++++.+.. +..+|+. |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI------------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI------------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE------------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE------------echHHhcC
Confidence 999999999999999999999999998643 346667777776655 5565554 66666654
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.79 E-value=5.8e-07 Score=97.79 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=45.3
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|++...+.+++.|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 3556789999999999999999999999864 77888887654211 0123466666544444445555543
No 314
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.71 E-value=1.4e-05 Score=93.46 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=82.0
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
.-|+.+.+-++||+++.|.|++|+|||||+..++..... .| ..+.|+. ..++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fS------lEms~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFS------LEMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEE------SSSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEe------CCCCHHHH
Confidence 457777778999999999999999999999888753210 11 1233332 23444333
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHH
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~ 1063 (1472)
..- .......+++..+++ | .||.++.+|+..|...+.++++.+.|+|...+| .|..
T Consensus 90 ~~R-----------lls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~ 145 (338)
T 4a1f_A 90 ALR-----------ALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRL 145 (338)
T ss_dssp HHH-----------HHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHH
T ss_pred HHH-----------HHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHH
Confidence 210 000111122222222 2 599999999999999999999999999865432 5556
Q ss_pred HHHHHhhC--CCEEEEEec
Q 045902 1064 TVRNTVDT--GRTVVCTIH 1080 (1472)
Q Consensus 1064 ~l~~l~~~--g~tvi~t~H 1080 (1472)
.++++.++ |..+|++=|
T Consensus 146 ~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 146 QLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 66666543 567776643
No 315
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.71 E-value=6.5e-05 Score=89.22 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcccc-CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEe--cCc
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQP 1082 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LD-EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~--H~~ 1082 (1472)
..+|++|+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 358999998876 55555667788999 99999999998888887777653 67777777 664
No 316
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.70 E-value=1.2e-05 Score=85.66 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=32.4
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~ 226 (1472)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6788999999 99999999999999999999876553
No 317
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.69 E-value=1.4e-05 Score=86.39 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045902 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMV 391 (1472)
Q Consensus 353 vsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~ 391 (1472)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998886643
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.67 E-value=1e-05 Score=105.53 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEE-ecCccHHHHHhhCeEEEE
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t-~H~~~~~~~~~~D~v~~l 1096 (1472)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++. ++.+.+++..++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 3579999999999999999999999999996 999887777777666655455677775 88764 566677654333
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.61 E-value=2.9e-05 Score=84.51 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=72.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHH
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMF 997 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~ 997 (1472)
+++|+|+|||||||+.+.|++. |...+++-. ..+.+. .+....
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-------g~~~id~d~-----~~~~~~-------------------------~~~~~~ 46 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-------GVPLVDADV-----VAREVV-------------------------AKDSPL 46 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-------TCCEEEHHH-----HHHHTT-------------------------CSSCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-------CCcccchHH-----HHHHHc-------------------------cCChHH
Confidence 6899999999999999999983 222333211 111000 001122
Q ss_pred HHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEE
Q 045902 998 VEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077 (1472)
Q Consensus 998 ~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~ 1077 (1472)
..++.+.+|...+ .+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.+++. .+.+||+
T Consensus 47 ~~~i~~~~g~~~~------------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~ 110 (206)
T 1jjv_A 47 LSKIVEHFGAQIL------------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLF 110 (206)
T ss_dssp HHHHHHHHCTTCC------------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEE
T ss_pred HHHHHHHhCHHHh------------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEE
Confidence 3445555543211 3578899999999988888765444 3456666666666555433 3568888
Q ss_pred EecCccHH-HHHhhCeEEEEe
Q 045902 1078 TIHQPSID-IFEAFDELFLMK 1097 (1472)
Q Consensus 1078 t~H~~~~~-~~~~~D~v~~l~ 1097 (1472)
.+|..... ....||.++++.
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEE
T ss_pred EechhhhcCcHhhCCEEEEEE
Confidence 88864321 245678888875
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.61 E-value=1.6e-05 Score=86.33 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~ 226 (1472)
.+++|++++|+|||||||||++++|++.+.++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
No 321
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.59 E-value=1.4e-05 Score=102.45 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=75.0
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ...++.+++..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3467889999999999999999999999643221234666 45544321 1223334444443322110 0
Q ss_pred HHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHH
Q 045902 987 SAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066 (1472)
Q Consensus 987 ~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~ 1066 (1472)
-...+.|+ ||...++ .......-..+.-++++| |+.|+|+.+... ++
T Consensus 74 -------------------~~~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~----~~ 120 (665)
T 2dy1_A 74 -------------------HRVFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA----WT 120 (665)
T ss_dssp -------------------EEEEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH----HH
T ss_pred -------------------EEEEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH----HH
Confidence 00112222 2222222 112222335677888999 999999887743 23
Q ss_pred HHhhCCCEEEEEecCccH
Q 045902 1067 NTVDTGRTVVCTIHQPSI 1084 (1472)
Q Consensus 1067 ~l~~~g~tvi~t~H~~~~ 1084 (1472)
.+.+.|.++|+++|..+.
T Consensus 121 ~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHTTCCEEEEEECGGG
T ss_pred HHHHccCCEEEEecCCch
Confidence 333457888999998663
No 322
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.58 E-value=8.6e-06 Score=95.09 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=59.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---------C---CceEEEE-cC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---------P---QRTCAYI-SQ 254 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---------~---~~~~~yv-~Q 254 (1472)
+++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999988664 688998877653211 1 3457888 67
Q ss_pred CCCCCCCCCHHHHHHH
Q 045902 255 HDLHHGEMTVRETLDF 270 (1472)
Q Consensus 255 ~d~~~~~lTV~E~l~f 270 (1472)
.....|..++.+++..
T Consensus 171 ~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 171 KLNADPASVVFDAIKK 186 (320)
T ss_dssp STTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6555555566666654
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.55 E-value=2.4e-05 Score=84.90 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.5
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
No 324
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.54 E-value=0.00017 Score=84.13 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=31.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
..-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346788888899999999999999999999888874
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=3.9e-05 Score=83.17 Aligned_cols=40 Identities=25% Similarity=0.081 Sum_probs=24.8
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
....+++|||+.+++|+.++|+|+|||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999765
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.50 E-value=1.8e-05 Score=84.93 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998864
No 327
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.49 E-value=1.2e-06 Score=108.02 Aligned_cols=49 Identities=33% Similarity=0.617 Sum_probs=42.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 242 (1472)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 3688999999999 99999999999999999999864 5788888876644
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.47 E-value=1.1e-05 Score=90.92 Aligned_cols=63 Identities=21% Similarity=0.118 Sum_probs=45.4
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhc---CCCCCCeeEEEEE--------EcCccCCh----hcccceeEEec
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA---GRKTGGYIEGSIS--------ISGYPKKQ----ETFARISGYCE 969 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~--------i~G~~~~~----~~~~~~~gyv~ 969 (1472)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ...++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 445544 789999999999999999999999 8755 4578888 78876532 23455678887
Q ss_pred cCC
Q 045902 970 QND 972 (1472)
Q Consensus 970 Q~~ 972 (1472)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
No 329
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.44 E-value=9e-06 Score=91.80 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=44.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHh---CCCCCCCCceeEEE--------EcCeeCCCCCC----CceEEEE
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALS---GKSDKSLRVSGRVT--------YCGHELTEFVP----QRTCAYI 252 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~I~--------~~G~~~~~~~~----~~~~~yv 252 (1472)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++..... .+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887666 78888 88887643211 2456777
Q ss_pred cCC
Q 045902 253 SQH 255 (1472)
Q Consensus 253 ~Q~ 255 (1472)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 330
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.44 E-value=6.1e-06 Score=89.64 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=42.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEE--EEcCeeCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRV--TYCGHELT 241 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I--~~~G~~~~ 241 (1472)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445667777789999999999999999999999999875 2 5766 78776553
No 331
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.43 E-value=1.2e-06 Score=108.02 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=78.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh---cccceeEEeccCCC-CCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE---TFARISGYCEQNDI-HSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~---~~~~~~gyv~Q~~~-~~~~l 978 (1472)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+..++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 45789999999999 89999999999999999998653 46788888654221 11122344555432 33444
Q ss_pred CHHHHHHHHHHcCC-----CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 979 TIYESLLYSAWLRL-----PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~-----~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
++.|.+......+. ..+...+.+.+++ ..|||||+|+..|+++...+|++ |||+..
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL---------------~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH---------------HHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHH---------------HHhcccccCccEEEEEecCChhh--cCcccc
Confidence 54444422111111 1111111111111 13778888888889999999987 898875
No 332
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.41 E-value=2.7e-05 Score=90.84 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=53.6
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcc-----cceeEEe-ccC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETF-----ARISGYC-EQN 971 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~-----~~~~gyv-~Q~ 971 (1472)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+... ..+ +..++++ .|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 34789999999999999999999999999999996542 25788887766532 112 3456788 665
Q ss_pred CCCCCCCCHHHHH
Q 045902 972 DIHSPNVTIYESL 984 (1472)
Q Consensus 972 ~~~~~~lTv~e~l 984 (1472)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4443433444444
No 333
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.40 E-value=1.4e-05 Score=89.89 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=35.6
Q ss_pred ceeeccceeEEeC---CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 903 LQLLQDVSGAFRP---GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 903 ~~iL~~vs~~i~~---Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+|+|+|++|++ |++++|+|++||||||+.++|++..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5699999999999 9999999999999999999999854
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.39 E-value=5.3e-05 Score=80.60 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=32.4
Q ss_pred eee--ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 904 QLL--QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 904 ~iL--~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
..+ +++++.+.+| +++|+||||||||||+++|.+...
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 345 7889999999 999999999999999999987543
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=3e-05 Score=83.12 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999764
No 336
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=6.8e-05 Score=81.24 Aligned_cols=38 Identities=29% Similarity=0.148 Sum_probs=24.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999754
No 337
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.35 E-value=0.0001 Score=85.35 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=80.5
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC-----CCCC--HHHHHH
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS-----PNVT--IYESLL 985 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~-----~~lT--v~e~l~ 985 (1472)
+++| .++|+|++|+|||||++.|.|.... + ..+.+ ..+..+..|++.+++..+ |..- ....+
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l- 74 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAI- 74 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHH-
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeEEEEECcCCCccchhhH-
Confidence 3444 8999999999999999999996420 0 11122 112234557776654211 1111 00000
Q ss_pred HHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCCCCHHH-HHHHH
Q 045902 986 YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVM 1062 (1472)
Q Consensus 986 ~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsgLD~~~-~~~i~ 1062 (1472)
... ..+.+.+.+...++.-..+. ... +|.|++ .+++.+. ..|.++++ +.+|... ...+.
T Consensus 75 -~~~-------~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 75 -NRL-------MNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp -HHH-------HTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred -HHH-------HHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 000 00001111111111111111 112 888886 5566666 67888888 7899876 56677
Q ss_pred HHHHHHhhC-CC--EEEEEecCccHHHHHhhCeEE
Q 045902 1063 RTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 1094 (1472)
Q Consensus 1063 ~~l~~l~~~-g~--tvi~t~H~~~~~~~~~~D~v~ 1094 (1472)
+.++++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888888654 43 5556666543 3444555443
No 338
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.33 E-value=9.9e-06 Score=96.41 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEec
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1080 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g-~tvi~t~H 1080 (1472)
.+..++++..+++..+.+|+++++.-..+..|... ...++.++.+...| ++|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788899999999999999777664333445433 44566677765555 57777766
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.30 E-value=4.7e-05 Score=84.55 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=35.3
Q ss_pred ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 909 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445689999999999999999999999986 36788888763
No 340
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.30 E-value=9.2e-05 Score=96.53 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEIST-GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++..++...+.+++++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTS
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcC
Confidence 389999999999999999999999999996 9998877777766655432 3456777655566666677764
No 341
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.30 E-value=7.9e-05 Score=79.38 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEc
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~ 236 (1472)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987532 25655543
No 342
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.29 E-value=0.00052 Score=81.79 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.3
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHHHhh---CCCEEEEEecCcc
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1083 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~---~g~tvi~t~H~~~ 1083 (1472)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888887766654 5789999999874
No 343
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.28 E-value=0.00056 Score=80.68 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=78.2
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCC--CCC---CeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~--~~~---~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
-|+.+- +-+++|+++.|.||+|+|||||+..++.. .+. +...+. .|+.-+..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~v-----------------lyi~~E~~~---- 168 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKI-----------------IFIDTENTF---- 168 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEE-----------------EEEESSSCC----
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeE-----------------EEEECCCCC----
Confidence 345443 57999999999999999999999988863 210 001122 333322211
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH-HHHHHHHHHHHh----hCCCCccccCCCCCC
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-QRKRLTIAVELV----ANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG-qrqRl~iA~aL~----~~p~il~LDEPTsgL 1053 (1472)
....-......+..+ .+++++.+-.. + ..++. +.+.+..++.++ .+++++++|+.++-.
T Consensus 169 ~~~~l~~~~~~~g~~----~~~~l~~l~~~---~---------~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 169 RPDRLRDIADRFNVD----HDAVLDNVLYA---R---------AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp CHHHHHHHHHHTTCC----HHHHHHTEEEE---E---------CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred CHHHHHHHHHHcCCC----HHHHHhceeEe---e---------cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 121111112222222 12233322111 1 12333 335555666666 568999999999865
Q ss_pred CHH------------HHHHHHHHHHHHhhC-CCEEEEEecCc
Q 045902 1054 DAR------------AAAIVMRTVRNTVDT-GRTVVCTIHQP 1082 (1472)
Q Consensus 1054 D~~------------~~~~i~~~l~~l~~~-g~tvi~t~H~~ 1082 (1472)
+.. ....+++.|++++++ |.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 134556666666654 89999988853
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.26 E-value=5.1e-05 Score=84.31 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=34.8
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 240 (1472)
++..++|++++|.|++|||||||+++|+|. .|+|.+++.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 345579999999999999999999999997 37788887654
No 345
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.22 E-value=0.00058 Score=79.52 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=82.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
..+-|+++.+-++||+++.|.|+||+|||||+.-++...-. .| ..+.|++- +++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---------------~~vl~~sl------E~s~ 108 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND---------------DVVNLHSL------EMGK 108 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---------------CEEEEEES------SSCH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---------------CeEEEEEC------CCCH
Confidence 44568888888999999999999999999998888753211 11 23556553 3455
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
.+...=.. .. ..++ ..+.+ .+ |. ..
T Consensus 109 ~~l~~R~~----------------~~--~~~i----------------------~~~~l---------~~---~~---~~ 133 (315)
T 3bh0_A 109 KENIKRLI----------------VT--AGSI----------------------NAQKI---------KA---AR---RD 133 (315)
T ss_dssp HHHHHHHH----------------HH--HTTC----------------------CHHHH---------HS---CH---HH
T ss_pred HHHHHHHH----------------HH--HcCC----------------------CHHHH---------hc---CC---CC
Confidence 44331000 00 0000 00000 00 00 12
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE--EEEE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT--MIIS 401 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t--vii~ 401 (1472)
||++|++|+..|...+.++++++.|+|... ..++.+.++++.+..+.. +|+.
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 899999999999888888899999988632 455667777776655555 5443
No 346
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.19 E-value=3.2e-05 Score=86.94 Aligned_cols=38 Identities=37% Similarity=0.462 Sum_probs=35.7
Q ss_pred ceeeeceeeEEeC---CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 186 LEILHDVSGIVKP---SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 186 ~~iL~~vs~~i~~---Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|+|+.+++ |+.++|+|+|||||||+.++|++.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999 9999999999999999999999865
No 347
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.00073 Score=79.03 Aligned_cols=145 Identities=20% Similarity=0.194 Sum_probs=78.6
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHH
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
.|+.+- +-+++|+++.|.||+|+|||||+..++.........| |. ...+.|+.-+..+ ...+-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHH
Confidence 345443 6799999999999999999999998875311000000 00 0122333322211 11111
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH-HHHHHHHHHHHh---hCCCCccccCCCCCCCH----
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA---- 1055 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG-qrqRl~iA~aL~---~~p~il~LDEPTsgLD~---- 1055 (1472)
......+..+ .+++++.+- +. +..+.. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 159 ~~~~~~~g~~----~~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 159 ENMAKALGLD----IDNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp HHHHHHTTCC----HHHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred HHHHHHhCCC----HHHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1111122222 122222111 11 113333 346677788887 57899999999975532
Q ss_pred ----HH----HHHHHHHHHHHhhC-CCEEEEEecC
Q 045902 1056 ----RA----AAIVMRTVRNTVDT-GRTVVCTIHQ 1081 (1472)
Q Consensus 1056 ----~~----~~~i~~~l~~l~~~-g~tvi~t~H~ 1081 (1472)
.. ...+++.|++++++ |.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24455566666544 8999998874
No 348
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00012 Score=78.02 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG 953 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G 953 (1472)
.+|++++|+||||||||||++.|++..++ ...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 36899999999999999999999996542 1345555443
No 349
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.15 E-value=0.001 Score=76.45 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH----------HHHHHHHHHHHHhh----CCCEEEEEecCcc---HHH
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1086 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~t~H~~~---~~~ 1086 (1472)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467777888888888899999999998776532 22234444443321 2356788888753 334
Q ss_pred HHhhCeE
Q 045902 1087 FEAFDEL 1093 (1472)
Q Consensus 1087 ~~~~D~v 1093 (1472)
...||+.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4455543
No 350
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.13 E-value=7.1e-05 Score=81.14 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=40.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEE--EEcCccC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSI--SISGYPK 956 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i--~i~G~~~ 956 (1472)
....+.++...++|++++|+||||||||||.++|++... ..|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 345677778889999999999999999999999999753 13555 7777543
No 351
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.12 E-value=0.00019 Score=78.42 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=27.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
No 352
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.11 E-value=6.9e-05 Score=89.17 Aligned_cols=44 Identities=32% Similarity=0.348 Sum_probs=38.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY 235 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~ 235 (1472)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 466654
No 353
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.07 E-value=0.0023 Score=75.39 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.2
Q ss_pred eecee-eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 189 LHDVS-GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 189 L~~vs-~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55443 57999999999999999999999998874
No 354
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.0011 Score=78.68 Aligned_cols=56 Identities=9% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMD-EISTGLDSSTTFQIVRFMRQMVHITDVTMIISL 402 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLD-EptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 402 (1472)
.+|+||+|++. +.+...++-++++| ++..|+|......+++.+++... +..+++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55566788899999 99999999988888877776532 45555554
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.03 E-value=0.0003 Score=76.42 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=27.7
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
-.+++|++++|+|+|||||||+.+.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999763
No 356
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.02 E-value=0.0015 Score=77.47 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=27.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
..+|+++++.++ .++|+|++|||||||+++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999988 8999999999999999999994
No 357
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00016 Score=76.33 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999863 566776643
No 358
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.00 E-value=0.0023 Score=73.42 Aligned_cols=27 Identities=44% Similarity=0.818 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++.-++|.||||+|||||.++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467788999999999999999999864
No 359
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.98 E-value=0.00026 Score=77.27 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999765
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.98 E-value=0.00012 Score=79.35 Aligned_cols=41 Identities=24% Similarity=0.126 Sum_probs=33.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999987554 5677665443
No 361
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.94 E-value=0.00044 Score=84.42 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=47.5
Q ss_pred hCCCCccccCCCCCCCH-HHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE-EecCcEEEEEcCCC
Q 045902 1039 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~-~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~-l~~gg~v~~~g~~~ 1109 (1472)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.+..++....+++.- + ..|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~-~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-HSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-cCCeEEEeCCCC
Confidence 38999999999887764 6777888999888888999999999864321111122211 2 235666666664
No 362
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.90 E-value=0.0029 Score=73.97 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=29.5
Q ss_pred eeecee-eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 188 ILHDVS-GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 188 iL~~vs-~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 355543 67999999999999999999999988864
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.84 E-value=0.00054 Score=74.44 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=27.2
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
-.+++|++++|+|++|||||||.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357889999999999999999999999865
No 364
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.83 E-value=0.00011 Score=94.36 Aligned_cols=48 Identities=38% Similarity=0.369 Sum_probs=33.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 242 (1472)
|+.+++|+.++|+|++|+|||||++.|++..... ...|+| .+|..+.+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 3457789999999999999999999999754331 125766 55554433
No 365
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.82 E-value=0.00027 Score=74.57 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=30.0
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999999753 556777654
No 366
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.82 E-value=8.9e-05 Score=86.22 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=34.7
Q ss_pred ccceeeccceeEEeCCe------EEEEEcCCCCChhHHHhhhcCCCC
Q 045902 901 NRLQLLQDVSGAFRPGV------LTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge------~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
+..+.|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567888888887776 999999999999999999998653
No 367
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.80 E-value=0.0047 Score=73.43 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=30.6
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEecC
Q 045902 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHI--TDVTMIISLLQP 405 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~--~~~tvii~~~q~ 405 (1472)
++|.++++||+... |......+.+.+.+.... .+.++|++.+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 56889999999876 887777777777654331 355666665554
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.80 E-value=0.00054 Score=70.64 Aligned_cols=30 Identities=30% Similarity=0.712 Sum_probs=24.8
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566665 99999999999999999986
No 369
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.75 E-value=0.00026 Score=88.37 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=36.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-EEE-EcCee
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG-RVT-YCGHE 239 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~I~-~~G~~ 239 (1472)
..+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 357899999999999999999999999998775 54 674 77643
No 370
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.75 E-value=0.00046 Score=74.48 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=26.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999865
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.74 E-value=0.00014 Score=84.69 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=28.8
Q ss_pred eeeceeeEEeCCe------EEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 188 ILHDVSGIVKPSR------MTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 188 iL~~vs~~i~~Ge------~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.|++++..+..++ +++|+||||||||||+++|++.+.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444 899999999999999999999875
No 372
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.74 E-value=0.00028 Score=86.20 Aligned_cols=69 Identities=9% Similarity=0.205 Sum_probs=44.9
Q ss_pred CCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE-ecCCeEEEecCh
Q 045902 361 GPAKALFMDEISTGLDS-STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL-LSEGEIVYQGPR 430 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs-~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil-L~~G~iv~~G~~ 430 (1472)
.++++|++||+..-.+. .+...+...+..+.. .+..+|++.+.|..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 38899999999887765 667778888887754 5677888777765543323333332 345555555443
No 373
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.74 E-value=0.0037 Score=70.16 Aligned_cols=34 Identities=35% Similarity=0.806 Sum_probs=24.3
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++++++..++| ++|.||||+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998653
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.74 E-value=0.00073 Score=69.69 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=23.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~ 220 (1472)
.+..+.+| +++|+|||||||||+|++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34445555 99999999999999999987
No 375
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.00051 Score=72.09 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.|++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.66 E-value=0.0003 Score=76.27 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=31.7
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
..++|++++|+|+||||||||++.|++.... ..|.|.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 3578999999999999999999999986531 1355655443
No 377
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.64 E-value=0.00098 Score=77.05 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=26.4
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999754
No 378
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.62 E-value=0.0013 Score=80.39 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=91.7
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--CCeeEEEEEEcCccCChhcc-cceeE---EeccCCCCCCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GGYIEGSISISGYPKKQETF-ARISG---YCEQNDIHSPN 977 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~~~~G~i~i~G~~~~~~~~-~~~~g---yv~Q~~~~~~~ 977 (1472)
.-|+.+.+-+++|+++.|.|++|+|||||...++.... .+ ...+.+... .+.... .|..+ -++.+......
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~~g~ 264 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVRLGQ 264 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCCGGG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhCCC
Confidence 45777777899999999999999999999988876321 11 012222221 111111 11100 01110000001
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCCCCH
Q 045902 978 VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsgLD~ 1055 (1472)
++-.|. ..+.+.++.+...++ .+.. ..++|..+- .+.++.+. .+|+++++|..+.=.+.
T Consensus 265 l~~~~~------------~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 265 LTDRDF------------SRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp CCHHHH------------HHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred CCHHHH------------HHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 111110 112222332221111 1111 125777665 34556665 47999999998753322
Q ss_pred ----------HHHHHHHHHHHHHhhC-CCEEEEEecC-----------ccH-------HHHHhhCeEEEEec
Q 045902 1056 ----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLMKR 1098 (1472)
Q Consensus 1056 ----------~~~~~i~~~l~~l~~~-g~tvi~t~H~-----------~~~-------~~~~~~D~v~~l~~ 1098 (1472)
.....+.+.|+.++++ +.+||+++|- |.. .+.+.+|.++.|.+
T Consensus 326 ~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 326 GSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1234677888888765 8999999982 211 23456788888864
No 379
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.61 E-value=0.0011 Score=86.90 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=28.0
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
+.+++|+.++|.||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999999999998754
No 380
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.60 E-value=0.00065 Score=73.27 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998643
No 381
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.60 E-value=0.0042 Score=71.75 Aligned_cols=29 Identities=41% Similarity=0.736 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+++++-++|.||||+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35688899999999999999999999865
No 382
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.58 E-value=0.0021 Score=77.64 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=33.1
Q ss_pred HHHHHHhhCCCCccccCCC-CC--CCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 045902 1032 TIAVELVANPSIIFMDEPT-SG--LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPT-sg--LD~~~~~~i~~~l~~l~~~g~tvi~t~H~ 1081 (1472)
+++.+...+++++++|+|. .+ .|+....++.++++.+......+|+.+|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 4555555689999999997 45 78877777777666554334445555553
No 383
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.00047 Score=81.86 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999753
No 384
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.54 E-value=0.0013 Score=86.17 Aligned_cols=32 Identities=44% Similarity=0.691 Sum_probs=28.8
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
+.+++|+.++|.||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998753
No 385
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.47 E-value=0.00029 Score=83.05 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCe
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 238 (1472)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 5778888888999999999999999999999999976543 455655443
No 386
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.37 E-value=0.0033 Score=66.00 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
No 387
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.35 E-value=0.00073 Score=79.84 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=32.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999976554 5777665544
No 388
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.35 E-value=0.001 Score=69.77 Aligned_cols=27 Identities=37% Similarity=0.334 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
.|++++|+||||||||||.++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998643
No 389
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.35 E-value=0.0083 Score=70.81 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=28.4
Q ss_pred eeccce--eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 905 LLQDVS--GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 905 iL~~vs--~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 4689999999999999999999988875
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.34 E-value=0.00056 Score=85.32 Aligned_cols=42 Identities=36% Similarity=0.534 Sum_probs=34.1
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-EEE-EcCcc
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-SIS-ISGYP 955 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~-i~G~~ 955 (1472)
.+++|++++|+|+||||||||+++|+|...+ ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 5789999999999999999999999997653 244 574 77754
No 391
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.27 E-value=0.0035 Score=65.77 Aligned_cols=27 Identities=37% Similarity=0.697 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999853
No 392
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.19 E-value=0.04 Score=64.99 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.9
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+=+++|+++.|.|+||+|||||...++..
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999999888754
No 393
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.18 E-value=0.0079 Score=72.60 Aligned_cols=37 Identities=30% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG 237 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G 237 (1472)
++.+++++|||||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999877543 45555533
No 394
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.14 E-value=0.0023 Score=69.47 Aligned_cols=29 Identities=31% Similarity=0.735 Sum_probs=24.3
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999886
No 395
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.13 E-value=0.011 Score=72.15 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
.-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35677777799999999999999999999877775
No 396
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.11 E-value=0.012 Score=67.78 Aligned_cols=28 Identities=39% Similarity=0.570 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568899999999999999999987644
No 397
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.10 E-value=0.00089 Score=83.90 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=38.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG 237 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G 237 (1472)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3567777777 89999999999999999999999988654 67776655
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.09 E-value=0.0025 Score=70.55 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=27.4
Q ss_pred eeceeeEEe---CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 189 LHDVSGIVK---PSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 189 L~~vs~~i~---~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 677777776 9999999999999999999999987653
No 399
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.07 E-value=0.0016 Score=77.24 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998653
No 400
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.06 E-value=0.0007 Score=79.78 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=35.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
...+++++++.+.+|.+++|+|++|||||||++.|++..
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999854
No 401
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.06 E-value=0.012 Score=71.86 Aligned_cols=37 Identities=19% Similarity=0.458 Sum_probs=32.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457777778999999999999999999999888864
No 402
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.04 E-value=0.0037 Score=66.64 Aligned_cols=35 Identities=34% Similarity=0.444 Sum_probs=20.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999988887 5689999999999999999973
No 403
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.00 E-value=0.0043 Score=66.21 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=27.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC------CCCeeEEEEEEcC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGYIEGSISISG 953 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~------~~~~~~G~i~i~G 953 (1472)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 4789999998887 67999999999999999999732 1223455666655
No 404
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.00 E-value=0.0056 Score=74.61 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC-------C--CCceeEEEEcCeeC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDK-------S--LRVSGRVTYCGHEL 240 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~-------~--~~~~G~I~~~G~~~ 240 (1472)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47899999999999999999997431 0 02368999999865
No 405
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.00 E-value=0.0014 Score=72.69 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhC
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1091 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D 1091 (1472)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-++++++.--+.....+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445555543 33578899999999976 6887766544444444333334666665544433444444
No 406
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.98 E-value=0.0034 Score=68.13 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=22.9
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~ 220 (1472)
.++.+.| .+++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3444555 499999999999999999986
No 407
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.98 E-value=0.0056 Score=69.70 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.++.-+.|.||+|+|||||.++|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999998754
No 408
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.96 E-value=0.025 Score=62.61 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=28.8
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHHHhh--CCCEEEEEec
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1080 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~--~g~tvi~t~H 1080 (1472)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46799999999888888666555555443321 1258888888
No 409
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.94 E-value=0.0021 Score=69.18 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=30.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888875 689999999999999999974
No 410
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.89 E-value=0.0055 Score=74.68 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCC------C----CeeEEEEEEcCcc
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKT------G----GYIEGSISISGYP 955 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~------~----~~~~G~i~i~G~~ 955 (1472)
-.++|+|+||+|||||++.|+|... + .+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3689999999999999999999642 1 1346889999864
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.89 E-value=0.0032 Score=69.77 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.5
Q ss_pred eccceeEEe---CCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 906 LQDVSGAFR---PGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 906 L~~vs~~i~---~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
|.++++++. +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566777766 999999999999999999999998654
No 412
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.86 E-value=0.012 Score=66.98 Aligned_cols=28 Identities=43% Similarity=0.845 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.++.-++|.||||+|||||.++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999865
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.84 E-value=0.0014 Score=71.41 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=33.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee--EEEEcCee
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG--RVTYCGHE 239 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~I~~~G~~ 239 (1472)
.+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 35689999999999999999999999987643 46 66666543
No 414
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.82 E-value=0.0048 Score=67.89 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=41.9
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCcchHHhccCeEEEec
Q 045902 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL---------QPAPETYDLFDDIILLS 420 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~---------q~~~~~~~~fD~iilL~ 420 (1472)
.+++++++||.-. |+. ++++.++.+++ .+..+|++=+ .+++++..++|.|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999964 664 35556677666 4888888877 67788899999999975
No 415
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.81 E-value=0.02 Score=66.57 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=28.5
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444 6799999999999999999999988774
No 416
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.81 E-value=0.0017 Score=76.22 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=30.5
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
|+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999874
No 417
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.81 E-value=0.0039 Score=67.14 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHhhhcCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.-+.|.||+|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999864
No 418
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.76 E-value=0.0086 Score=69.69 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.4
Q ss_pred hhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCc
Q 045902 1038 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082 (1472)
Q Consensus 1038 ~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~ 1082 (1472)
..+|++||+||+-. .-|..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999866 2344677788888888877777788877754
No 419
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.76 E-value=0.0027 Score=68.34 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=31.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999998888 4789999999999999999974
No 420
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.74 E-value=0.0041 Score=66.19 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999875
No 421
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.74 E-value=0.0041 Score=65.68 Aligned_cols=39 Identities=31% Similarity=0.253 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee--EEEEcCee
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG--RVTYCGHE 239 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~I~~~G~~ 239 (1472)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999987643 24 45555543
No 422
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.70 E-value=0.002 Score=76.07 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
+++.+++|+|++|||||||++.|+|...+ ..|.|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEeec
Confidence 46889999999999999999999985431 13556555543
No 423
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.69 E-value=0.0042 Score=67.28 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=26.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998764
No 424
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.69 E-value=0.0054 Score=71.45 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=31.2
Q ss_pred CCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 361 GPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 361 ~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
.++++|++||+-.- .|..+...+...+..+.. .+..+|++...+..
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 46899999998662 233677778888877655 45566666655544
No 425
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.64 E-value=0.015 Score=63.83 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=42.6
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CccHHHHHhhCeEEEEe
Q 045902 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1040 ~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H---------~~~~~~~~~~D~v~~l~ 1097 (1472)
+|+++++||.-. |+.. +++.++.+++.|.+||++-| .++.++.+.+|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 6643 55566777777999999999 66778889999999875
No 426
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.64 E-value=0.0023 Score=80.16 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=40.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
..+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 45678888888 899999999999999999999998654 34677777664
No 427
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.62 E-value=0.0045 Score=67.87 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.+++|+|||||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 428
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.59 E-value=0.0039 Score=65.95 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
.+++|+|++|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999998754321224777776554
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.51 E-value=0.0051 Score=64.99 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999854
No 430
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.50 E-value=0.006 Score=72.67 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=26.4
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456778889999999999999999999986
No 431
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.49 E-value=0.0015 Score=77.61 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 45678888876 9999999999999999988643
No 432
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.47 E-value=0.0024 Score=70.86 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEIST-GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... .-.++++|-.-|.+...++|+
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTT
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcC
Confidence 35544442 33578899999999966 6887766555555444322 234566666555555445554
No 433
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.44 E-value=0.0014 Score=77.69 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.7
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 456788999877 999999999999999998853
No 434
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.41 E-value=0.014 Score=60.41 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 435
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.40 E-value=0.0054 Score=66.39 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=25.2
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999998754
No 436
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.39 E-value=0.0069 Score=65.46 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch--HHhccCeEEEec
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE--TYDLFDDIILLS 420 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~--~~~~fD~iilL~ 420 (1472)
+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .+.++|+..+- ..+ ....+|.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~-l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPL-LIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTT-TTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEech-hhhcCcHhhCCEEEEEE
Confidence 678899999999888887654333 2345555555554444322 24456655432 222 246788887773
No 437
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.37 E-value=0.0054 Score=67.25 Aligned_cols=56 Identities=21% Similarity=0.083 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEE--------cCccCCh----hcccceeEEeccC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISI--------SGYPKKQ----ETFARISGYCEQN 971 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i--------~G~~~~~----~~~~~~~gyv~Q~ 971 (1472)
+.+++|+|||||||||+.+.|++.... -...|++.. +|.+... ...++.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975321 133566665 5654431 1233456777665
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.37 E-value=0.013 Score=60.65 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 439
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.33 E-value=0.0065 Score=64.61 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=26.2
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999864
No 440
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.30 E-value=0.0041 Score=66.17 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
++|.++.|.|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987654
No 441
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.28 E-value=0.031 Score=66.06 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999998643
No 442
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.23 E-value=0.0046 Score=74.52 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=37.8
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999988764 5778776544
No 443
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.20 E-value=0.0024 Score=74.67 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=32.3
Q ss_pred eeeeceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhCCC
Q 045902 187 EILHDVSGIVKPSRM--TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~--~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++++++..+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367777788888888 9999999999999999999865
No 444
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.15 E-value=0.017 Score=60.96 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 445
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.06 E-value=0.085 Score=64.14 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
...-|+.+.+=+.||+++.|.|+||+|||||+.-++.
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3456777777799999999999999999999887775
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.05 E-value=0.0051 Score=69.11 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=32.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 240 (1472)
..+++.+++|+|+|||||||+.+.|+..+.. |.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 4567889999999999999999999987642 4566666443
No 447
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.03 E-value=0.013 Score=61.68 Aligned_cols=22 Identities=41% Similarity=0.768 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 448
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.01 E-value=0.0084 Score=69.21 Aligned_cols=44 Identities=7% Similarity=0.073 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHHh--CCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 045902 345 ISGGQKKRVTTGEMLV--GPAKALFMDEISTGLDSST-TFQIVRFMRQMVHITD 395 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~--~~p~illLDEptsgLDs~t-~~~i~~~L~~l~~~~~ 395 (1472)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 5566666 78999999 7899876 6667777877765433
No 449
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.01 E-value=0.07 Score=58.95 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5789999999999999999997543
No 450
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.00 E-value=0.0085 Score=64.58 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 451
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.97 E-value=0.011 Score=62.54 Aligned_cols=26 Identities=35% Similarity=0.661 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+|..++|.|+|||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
No 452
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.96 E-value=0.019 Score=67.96 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998743
No 453
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.95 E-value=0.062 Score=59.95 Aligned_cols=27 Identities=48% Similarity=0.789 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++..-++|.||||+|||||.++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999754
No 454
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.95 E-value=0.18 Score=58.53 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=24.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+|..-++|.||||+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566788999999999999999999865
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.95 E-value=0.0045 Score=67.36 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=31.5
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE--EEEEcC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG--SISISG 953 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G--~i~i~G 953 (1472)
.+++|.+++|+|++||||||+.+.|++...+ ..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECC
Confidence 3578999999999999999999999986531 235 566664
No 456
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.93 E-value=0.0031 Score=73.66 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=33.6
Q ss_pred eeeccceeEEeCCeE--EEEEcCCCCChhHHHhhhcCCC
Q 045902 904 QLLQDVSGAFRPGVL--TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+++++++.+++|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999998 9999999999999999999853
No 457
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.93 E-value=0.0076 Score=70.77 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=31.3
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
No 458
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.87 E-value=0.0035 Score=72.25 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=36.5
Q ss_pred ec-eeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 190 HD-VSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 190 ~~-vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 35 677766 9999999999999999999999987653 4667665443
No 459
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.84 E-value=0.081 Score=62.43 Aligned_cols=27 Identities=41% Similarity=0.800 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999999764
No 460
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.82 E-value=0.17 Score=62.56 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=30.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.+-|+.+.+-+.+|+++.|.|+||+|||||+.-++-
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 345677766799999999999999999999877764
No 461
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.77 E-value=0.012 Score=70.19 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=33.6
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC---------CCeeEEEEEEcCc
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------GGYIEGSISISGY 954 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---------~~~~~G~i~i~G~ 954 (1472)
-+.++.|..++|+|+||+|||||+++|+|... ..+..|.+.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34667888999999999999999999999621 1244688877664
No 462
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.74 E-value=0.0095 Score=64.18 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 463
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.71 E-value=0.013 Score=61.93 Aligned_cols=38 Identities=34% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCC-CCeeEEEEEEcCc
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKT-GGYIEGSISISGY 954 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~G~ 954 (1472)
.+++|+|+||||||||++.|.+... .+..-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999998532 2233467776654
No 464
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.68 E-value=0.046 Score=64.67 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.7
Q ss_pred eeccce--eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 905 LLQDVS--GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 905 iL~~vs--~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344443 4789999999999999999999887764
No 465
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.65 E-value=0.2 Score=59.19 Aligned_cols=28 Identities=39% Similarity=0.584 Sum_probs=25.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
+-+++|+++.|.||||+|||||...++-
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4689999999999999999999887764
No 466
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.61 E-value=0.017 Score=60.69 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.61 E-value=0.0041 Score=73.03 Aligned_cols=40 Identities=33% Similarity=0.576 Sum_probs=34.8
Q ss_pred ceeeeceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 186 LEILHDVSGIVKPSRM--TLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~--~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577788888889988 999999999999999999997644
No 468
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.60 E-value=0.011 Score=63.58 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999764
No 469
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.57 E-value=0.016 Score=60.31 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 470
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.56 E-value=0.11 Score=60.40 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=23.8
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..|..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566678999999999999999999754
No 471
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.54 E-value=0.14 Score=63.24 Aligned_cols=35 Identities=20% Similarity=0.099 Sum_probs=29.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34666666799999999999999999999877764
No 472
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.47 E-value=0.015 Score=61.72 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=25.7
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..++|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999999854
No 473
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.43 E-value=0.017 Score=61.27 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++.++.|.|+|||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998643
No 474
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.35 E-value=0.044 Score=61.15 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=21.9
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++..-+.|.||+|+|||||.++|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455789999999999999999874
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.31 E-value=0.061 Score=74.54 Aligned_cols=148 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred ecccee--EEeCCeEEEEEcCCCCChhHHHhhhcC-CCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 906 LQDVSG--AFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 906 L~~vs~--~i~~Ge~~al~G~nGaGKTTLl~~L~g-~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
|+.+.+ -+++|+++.|.||+|+|||||+..++. ....+ .--+.+++.........+..|+-.++-.+....++.+
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~lee 797 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHH
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCCCC------
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLD------ 1054 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsgLD------ 1054 (1472)
.+ ..++.++ .+|+++++|+.+.=..
T Consensus 798 i~-----------------------------------------------~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~ 830 (1706)
T 3cmw_A 798 AL-----------------------------------------------EICDALARSGAVDVIVVDSVAALTPKAEIEG 830 (1706)
T ss_dssp HH-----------------------------------------------HHHHHHHHHTCCSEEEESCSTTCCCHHHHHS
T ss_pred HH-----------------------------------------------HHHHHHHHccCCCEEEEechhhhcccccccc
Q ss_pred ----------HHHHHHHHHHHHHHhhC-CCEEEEEec----------Cc-----cHHHHHhhCeEEEEecCcEE
Q 045902 1055 ----------ARAAAIVMRTVRNTVDT-GRTVVCTIH----------QP-----SIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1055 ----------~~~~~~i~~~l~~l~~~-g~tvi~t~H----------~~-----~~~~~~~~D~v~~l~~gg~v 1102 (1472)
......++..|+.++++ |.+||++.| +| +-.+.+.+|-++.+.+++..
T Consensus 831 ~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~~ 904 (1706)
T 3cmw_A 831 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 904 (1706)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEE
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEecccc
No 476
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.30 E-value=0.02 Score=60.52 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 477
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.30 E-value=0.009 Score=71.98 Aligned_cols=46 Identities=26% Similarity=0.105 Sum_probs=36.9
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
+++++. +|++++++|+||+||||++..|++.... ..|.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577887 8999999999999999999999996542 146777766554
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.25 E-value=0.02 Score=60.47 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 479
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.21 E-value=0.024 Score=65.10 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.1
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
+-+.+| ++.|.||+|+|||||+-.++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 568899 99999999999999955443
No 480
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.19 E-value=0.0089 Score=67.08 Aligned_cols=45 Identities=29% Similarity=0.347 Sum_probs=34.1
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
++++.+ ..+++.++.|+|++||||||+.+.|+..... +.+.++|-
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecH
Confidence 444544 5678899999999999999999999976531 34566663
No 481
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.15 E-value=0.022 Score=63.03 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999654
No 482
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.13 E-value=0.02 Score=60.48 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
No 483
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.08 E-value=0.0078 Score=69.28 Aligned_cols=46 Identities=28% Similarity=0.190 Sum_probs=34.5
Q ss_pred cc-ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 907 QD-VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 907 ~~-vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
++ +++..+ |++++++|++|+||||++..|++.... ..+.+.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 777766 999999999999999999999986431 13455554443
No 484
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.07 E-value=0.05 Score=64.25 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++..++|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 485
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.05 E-value=0.023 Score=59.96 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 486
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.05 E-value=0.0071 Score=70.97 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=34.6
Q ss_pred cceeeccceeEEeCCeE--EEEEcCCCCChhHHHhhhcCCC
Q 045902 902 RLQLLQDVSGAFRPGVL--TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34578888889999998 9999999999999999999864
No 487
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.03 E-value=0.12 Score=56.01 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=42.7
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCcchHHhccCeEEEec
Q 045902 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL---------QPAPETYDLFDDIILLS 420 (1472)
Q Consensus 362 ~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~---------q~~~~~~~~fD~iilL~ 420 (1472)
+.+++++||.-- +|.. +++.++.++. .+..||++=+ .+++++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6643 3366777766 4889999988 89999999999999885
No 488
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.00 E-value=0.059 Score=66.34 Aligned_cols=28 Identities=50% Similarity=0.899 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998754
No 489
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.99 E-value=0.02 Score=61.65 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 490
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.15 Score=61.50 Aligned_cols=29 Identities=45% Similarity=0.815 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++|-.=+++.||||+|||+|.++||+...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55667789999999999999999998653
No 491
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.90 E-value=0.027 Score=58.44 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 045902 201 MTLLLGPPGSGKTTLLQAL 219 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L 219 (1472)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 492
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.89 E-value=0.027 Score=59.46 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999998654
No 493
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.89 E-value=0.023 Score=62.90 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999999754
No 494
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.86 E-value=0.03 Score=60.27 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999997654
No 495
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.79 E-value=0.03 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 496
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.78 E-value=0.03 Score=59.99 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999999876
No 497
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.73 E-value=0.054 Score=58.02 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CccHHHHHhhCeEEEEe
Q 045902 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1040 ~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H---------~~~~~~~~~~D~v~~l~ 1097 (1472)
+.+++++||.-- +|+. +++.++++++.|..||++-+ .++.++.+.+|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6643 35677887777999999999 55678889999988774
No 498
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.2 Score=60.22 Aligned_cols=29 Identities=45% Similarity=0.890 Sum_probs=24.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++|-+=+++.||||+|||+|.++||+.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45556689999999999999999998653
No 499
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.72 E-value=0.027 Score=59.35 Aligned_cols=25 Identities=48% Similarity=0.575 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+..++|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5677899999999999999999844
No 500
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.72 E-value=0.029 Score=58.79 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
|.++.|+|++||||||+.+.|+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997543
Done!