BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045903
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 16/231 (6%)
Query: 93 ADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVD----FLIKLFGSR 148
AD ++ L L +LG+ DL KI P + + + FE+ + FL L
Sbjct: 139 ADYVDHSETLQKLVQLGV---DLSKI-EKHPDVANLLLRLNFEKDIKQILLFLKDLGLED 194
Query: 149 EMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLN-DQK 207
L + +N ++ + DL+ +K VA + S+ D+ M+ + P L+ + D +
Sbjct: 195 NQLGPFLTKNYAIFSEDLE-NLKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSVERLDNR 253
Query: 208 MEYISRTQVSRASKMYKYVVTL--IAISRIETIRE--KVANLEKFGMSEDEIWSLFGRSP 263
+ + + K VV L + +E ++E KV LE G +EI + + P
Sbjct: 254 LGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLE-LGFKHNEIQHMVTKIP 312
Query: 264 LLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAA 314
+LT + K+ +V M +P ++I+++P +FN +K R L A
Sbjct: 313 KMLTANKRKLTETFDYVHNVMNIPHHIIVKFP-QVFNTRVFKIKERHLFLA 362
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 93 ADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVD----FLIKLFGSR 148
AD ++ L L +LG+ DL KI P + + + FE+ + FL L
Sbjct: 142 ADYVDHSKTLQKLVQLGV---DLSKI-EKHPDAANLLLRLDFEKHIKQILLFLKDLGLED 197
Query: 149 EMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLN-DQK 207
L + +N ++ + DL+ +K VA + S+ D+ M+ + P L+ + D +
Sbjct: 198 NQLGPFLTKNYAIFSEDLE-NLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVERLDNR 256
Query: 208 MEYISRTQVSRASKMYKYVVTL--IAISRIETIRE--KVANLEKFGMSEDEIWSLFGRSP 263
+ + + K VV L + +E ++E KV +LE G +EI + + P
Sbjct: 257 LGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLE-LGFKHNEIQHMVIKIP 315
Query: 264 LLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAA 314
+LT + K+ +V M +P ++I+++P LFN +K R L A
Sbjct: 316 KMLTANKRKLTEIFDYVHNVMNIPHHIIVKFP-QLFNTRVFKIKERHLFLA 365
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 151 LCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLN-DQKME 209
L + +N ++ + DL+ +K VA S+ D+ M+ P L+ + D ++
Sbjct: 205 LGAFLTKNHAIFSEDLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLG 263
Query: 210 YISRTQVSRASKMYKYVVTL--IAISRIETIRE--KVANLEKFGMSEDEIWSLFGRSPLL 265
+ + K VV L + +E ++E KV LE G +EI + R P +
Sbjct: 264 FFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLE-LGFKHNEIQHMITRIPKM 322
Query: 266 LTLSVDKVQRNMTFVVGTMKMPANVILEYP 295
LT + K+ FV M +P ++I+++P
Sbjct: 323 LTANKMKLTETFDFVHNVMSIPHHIIVKFP 352
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 37/149 (24%)
Query: 161 LLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRAS 220
LLT D +K I ++ + VGI + L P L P
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNP------------------------- 201
Query: 221 KMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFV 280
Y++ +E + +VA L+ EI + R+P LL SV+++ + F
Sbjct: 202 ----YILG----EELEALETRVAYLKSKKFGNAEITQMVSRAPYLLLFSVERLDNRLGFF 253
Query: 281 VG----TMKMPANVILEYPFLLFNNLEAV 305
++K ++++ +P LL LE V
Sbjct: 254 KNELGLSVKKTKDLVIRFPRLLTGKLEPV 282
>sp|C5DYE7|RRG7_ZYGRC Required for respiratory growth protein 7, mitochondrial
OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732
/ NBRC 1130 / NCYC 568 / NRRL Y-229) GN=RRG7 PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 12/192 (6%)
Query: 182 ISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREK 241
+SR I +M RP + R S ND +++I + Q S +++ + + R + +
Sbjct: 1 MSRLKAINGIMLRPIIWKRPSSNDAILQFIRQNQEISQSSVFQGTLYEHTVMRELSGKLS 60
Query: 242 VANLEKFGMSEDEIWSLFGRSPLLLTLS-------VDKVQRNMTFVVGTMKMPANVILEY 294
+ L+K G S D + G+ PL +D V + + GT P +E
Sbjct: 61 MNQLQKIGGSHDRGVDIRGQWPLDFVFGQVTKVVPLDAVPKRCK-IHGTTLKPLRCKIEE 119
Query: 295 PFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDA 354
+ L+A+++ + +KV E + L +++ + +R V + C P
Sbjct: 120 NDGKLDPLKALVQCKAFSGSKVSPR----EFRELVGTFASIVPDSQRNRSVILMCSPNLL 175
Query: 355 ADELMAVYKTAK 366
E +++ T K
Sbjct: 176 TKEGLSLINTVK 187
>sp|Q8F9R5|HIS4_LEPIN 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=hisA PE=3 SV=1
Length = 241
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 NELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYD 165
N+LG+N D ++KI + I +E++ + K+ +R +L A V NP LL Y
Sbjct: 57 NQLGVNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYA 116
Query: 166 LDKTIKP--VVALYEQVGISR 184
LD K VVA+ + GI +
Sbjct: 117 LDNYGKERVVVAVDARDGIVK 137
>sp|P62354|HIS4_LEPIC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=hisA PE=3 SV=1
Length = 241
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 NELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYD 165
N+LG+N D ++KI + I +E++ + K+ +R +L A V NP LL Y
Sbjct: 57 NQLGVNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYA 116
Query: 166 LDKTIKP--VVALYEQVGISR 184
LD K VVA+ + GI +
Sbjct: 117 LDNYGKERVVVAVDARDGIVK 137
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 74 GCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINIC 133
G + + + + P L K + +R + S L +LGL L +++ C P + R
Sbjct: 135 GLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR---- 190
Query: 134 FEERVDFLIKLFGSR-----EMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLI 188
++ ++ ++L + + + K + PS+L DL + Y ++GI D++
Sbjct: 191 -QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIV 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,027,739
Number of Sequences: 539616
Number of extensions: 4757776
Number of successful extensions: 11829
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11825
Number of HSP's gapped (non-prelim): 11
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)