Query 045903
Match_columns 385
No_of_seqs 224 out of 1238
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 2.1E-49 7.2E-54 388.0 21.3 301 36-348 25-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 4.7E-48 1.6E-52 366.4 18.2 255 64-354 6-263 (270)
3 4fp9_B Mterf domain-containing 100.0 2.1E-36 7.1E-41 292.8 21.3 227 97-364 45-276 (335)
4 3mva_O Transcription terminati 100.0 2.3E-36 7.8E-41 295.6 19.5 277 59-346 15-310 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 1.3E-29 4.5E-34 239.7 16.8 210 98-346 5-219 (270)
6 4fp9_B Mterf domain-containing 99.9 2.1E-25 7E-30 215.8 19.4 182 61-286 44-227 (335)
7 4fzv_B Mterf domain-containing 99.4 1.8E-11 6.1E-16 102.2 16.0 179 136-352 35-220 (239)
8 4fzv_B Mterf domain-containing 98.5 1.5E-06 5.1E-11 72.6 13.0 149 97-286 32-182 (239)
9 3ff5_A PEX14P, peroxisomal bio 85.8 1.6 5.6E-05 29.9 5.2 35 84-121 19-53 (54)
10 4ae4_A Ubiquitin-associated pr 85.6 7.4 0.00025 31.1 9.9 39 240-285 78-116 (118)
11 4ae4_A Ubiquitin-associated pr 85.4 7.2 0.00025 31.1 9.8 97 65-178 10-112 (118)
12 1oqy_A HHR23A, UV excision rep 84.2 2.7 9.2E-05 40.5 8.0 42 62-111 167-208 (368)
13 3ff5_A PEX14P, peroxisomal bio 81.6 1.8 6E-05 29.7 3.9 26 236-261 28-53 (54)
14 2cos_A Serine/threonine protei 81.0 1.3 4.3E-05 30.2 3.0 39 242-287 13-51 (54)
15 2w84_A Peroxisomal membrane pr 77.9 4.8 0.00016 29.0 5.4 34 85-121 25-58 (70)
16 4hpz_A Dtale2; DNA binding pro 76.9 37 0.0012 32.6 12.6 226 37-293 8-251 (463)
17 1veg_A NEDD8 ultimate buster-1 73.1 6 0.0002 29.6 5.1 41 239-286 30-70 (83)
18 2w84_A Peroxisomal membrane pr 71.9 4.1 0.00014 29.3 3.8 27 236-262 33-59 (70)
19 2ekk_A UBA domain from E3 ubiq 69.1 5.3 0.00018 26.1 3.7 35 240-282 11-45 (47)
20 1ify_A HHR23A, UV excision rep 68.9 5.6 0.00019 26.4 3.8 40 236-282 6-45 (49)
21 1oqy_A HHR23A, UV excision rep 68.5 4.2 0.00014 39.1 4.3 38 97-142 167-204 (368)
22 2ooa_A E3 ubiquitin-protein li 66.5 4.9 0.00017 27.1 3.0 26 236-261 9-34 (52)
23 2dak_A Ubiquitin carboxyl-term 64.7 8.5 0.00029 26.9 4.2 40 239-285 10-49 (63)
24 2g3q_A Protein YBL047C; endocy 63.3 5.2 0.00018 25.6 2.7 37 239-282 5-41 (43)
25 2xzm_O RPS13E; ribosome, trans 62.5 13 0.00045 30.8 5.5 37 86-122 23-59 (153)
26 2oo9_A E3 ubiquitin-protein li 61.9 9.7 0.00033 24.9 3.7 25 237-261 3-27 (46)
27 1wgn_A UBAP1, ubiquitin associ 61.9 5.1 0.00018 28.1 2.5 40 239-285 20-59 (63)
28 1z96_A DNA-damage, UBA-domain 60.5 10 0.00036 23.4 3.7 24 239-262 5-28 (40)
29 2juj_A E3 ubiquitin-protein li 59.4 11 0.00038 25.6 3.8 26 236-261 5-30 (56)
30 2dag_A Ubiquitin carboxyl-term 58.2 9.9 0.00034 27.6 3.7 42 239-286 10-51 (74)
31 1wiv_A UBP14, ubiquitin-specif 57.8 11 0.00039 27.2 4.0 38 239-283 30-67 (73)
32 2cpw_A CBL-interacting protein 57.6 13 0.00043 26.2 4.1 38 241-284 22-59 (64)
33 3u5c_N S27A, YS15, 40S ribosom 57.5 13 0.00044 30.9 4.6 37 86-122 21-57 (151)
34 2knz_A Ubiquilin-4; cytoplasm, 57.3 13 0.00044 25.0 3.9 41 235-282 8-49 (53)
35 1wgn_A UBAP1, ubiquitin associ 55.9 11 0.00036 26.5 3.3 35 66-107 22-56 (63)
36 2d9s_A CBL E3 ubiquitin protei 55.6 11 0.00038 25.5 3.2 25 238-262 9-33 (53)
37 3ugm_A TAL effector avrbs3/PTH 54.5 1.7E+02 0.006 30.6 13.1 201 72-293 252-465 (1047)
38 1wji_A Tudor domain containing 53.3 12 0.00042 26.2 3.4 38 239-283 10-47 (63)
39 1vg5_A RSGI RUH-014, rhomboid 52.6 9.2 0.00032 27.8 2.7 39 237-282 28-66 (73)
40 2d9s_A CBL E3 ubiquitin protei 52.4 16 0.00054 24.8 3.6 29 58-86 4-32 (53)
41 2dai_A Ubadc1, ubiquitin assoc 51.7 15 0.00052 27.3 3.9 40 239-285 30-69 (83)
42 2ooa_A E3 ubiquitin-protein li 51.2 16 0.00055 24.6 3.4 28 59-86 7-34 (52)
43 2crn_A Ubash3A protein; compac 50.6 15 0.00052 25.8 3.5 39 241-285 12-50 (64)
44 1vek_A UBP14, ubiquitin-specif 49.7 19 0.00066 26.7 4.2 40 240-285 31-70 (84)
45 2jy5_A Ubiquilin-1; UBA, alter 46.0 15 0.00051 24.6 2.8 40 236-282 10-50 (52)
46 1whc_A RSGI RUH-027, UBA/UBX 3 43.6 22 0.00074 24.9 3.4 39 241-285 12-50 (64)
47 2knz_A Ubiquilin-4; cytoplasm, 43.1 55 0.0019 21.8 5.3 38 65-109 13-51 (53)
48 2bwb_A Ubiquitin-like protein 40.8 32 0.0011 22.3 3.7 40 235-281 4-44 (46)
49 1ify_A HHR23A, UV excision rep 40.0 21 0.00071 23.6 2.7 37 64-107 9-45 (49)
50 3idw_A Actin cytoskeleton-regu 39.3 35 0.0012 24.6 3.9 15 243-257 42-56 (72)
51 1dv0_A DNA repair protein HHR2 36.0 12 0.00042 24.5 1.1 36 240-282 6-41 (47)
52 2dna_A Unnamed protein product 35.7 31 0.0011 24.5 3.2 41 235-282 16-57 (67)
53 1wr1_B Ubiquitin-like protein 34.6 37 0.0013 23.3 3.4 41 235-282 14-55 (58)
54 3e3v_A Regulatory protein RECX 32.8 2.2E+02 0.0074 23.8 11.0 23 239-261 140-162 (177)
55 3u5c_N S27A, YS15, 40S ribosom 32.3 24 0.00081 29.2 2.4 48 64-111 34-81 (151)
56 2xzm_O RPS13E; ribosome, trans 32.2 28 0.00096 28.8 2.8 47 65-111 37-83 (153)
57 2o71_A Death domain-containing 32.1 1.6E+02 0.0056 22.9 7.3 18 106-123 43-60 (115)
58 1ixs_A Holliday junction DNA h 31.8 43 0.0015 23.2 3.4 23 64-86 18-40 (62)
59 2xvc_A ESCRT-III, SSO0910; cel 31.8 1.1E+02 0.0038 21.0 5.3 46 250-322 10-55 (59)
60 1vg5_A RSGI RUH-014, rhomboid 29.8 65 0.0022 23.2 4.2 41 60-107 26-66 (73)
61 1wj7_A Hypothetical protein (R 29.8 77 0.0026 24.5 4.8 40 236-282 37-77 (104)
62 3j20_Q 30S ribosomal protein S 29.7 42 0.0014 28.0 3.5 38 86-123 21-58 (158)
63 1ixs_A Holliday junction DNA h 27.3 78 0.0027 21.9 4.1 27 236-262 15-41 (62)
64 3ugm_A TAL effector avrbs3/PTH 27.2 2.4E+02 0.0083 29.5 9.1 44 247-292 591-634 (1047)
65 2of5_A Death domain-containing 27.1 2.2E+02 0.0075 22.1 7.4 18 106-123 43-60 (114)
66 2dkl_A Trinucleotide repeat co 26.8 54 0.0018 24.3 3.4 39 239-284 22-60 (85)
67 1wji_A Tudor domain containing 26.2 65 0.0022 22.4 3.5 37 64-107 10-46 (63)
68 1q08_A Zn(II)-responsive regul 26.0 62 0.0021 24.0 3.8 24 238-261 5-28 (99)
69 4ayb_F DNA-directed RNA polyme 25.9 17 0.00059 28.6 0.5 29 96-124 50-78 (113)
70 1vej_A Riken cDNA 4931431F19; 25.5 40 0.0014 24.4 2.3 40 236-282 27-67 (74)
71 2dah_A Ubiquilin-3; UBA domain 24.1 74 0.0025 21.3 3.4 14 205-218 10-23 (54)
72 3oq9_A Tumor necrosis factor r 24.1 2.1E+02 0.0072 21.1 6.2 74 169-261 11-86 (86)
73 2dak_A Ubiquitin carboxyl-term 23.8 77 0.0026 21.8 3.6 38 63-107 9-46 (63)
74 1uxc_A FRUR (1-57), fructose r 23.7 67 0.0023 22.3 3.2 47 72-118 9-55 (65)
75 2c35_A Human RPB4, DNA-directe 22.7 50 0.0017 27.3 2.8 31 94-124 86-116 (152)
76 3k9o_A Ubiquitin-conjugating e 22.4 72 0.0025 27.5 3.9 27 236-262 161-187 (201)
77 2lbc_A Ubiquitin carboxyl-term 22.0 43 0.0015 26.6 2.2 39 240-285 80-118 (126)
78 1wlq_C CDT1 protein; coiled-co 21.8 98 0.0033 26.9 4.5 65 133-200 31-95 (201)
79 2ef8_A C.ECOT38IS, putative tr 20.7 2E+02 0.0067 19.8 5.5 56 237-292 10-74 (84)
80 3e3v_A Regulatory protein RECX 20.5 3.7E+02 0.013 22.3 8.9 41 66-110 24-64 (177)
81 1b0n_B Protein (SINI protein); 20.5 1.2E+02 0.0039 20.8 3.8 23 240-262 17-39 (57)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.1e-49 Score=387.95 Aligned_cols=301 Identities=16% Similarity=0.258 Sum_probs=266.4
Q ss_pred ccccccchHHHHHhhchhccccCCCCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhH
Q 045903 36 TYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDL 115 (385)
Q Consensus 36 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I 115 (385)
...++|++...+.+..+. +.+.++++++++++||+++|++++||++++.++|.+|.++++++.|+++||+++|++.++|
T Consensus 25 ~L~s~Gl~~~~~~~~~p~-l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i 103 (343)
T 3mva_O 25 NLLTMGVDIDMARKRQPG-VFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEI 103 (343)
T ss_dssp HHHHHTCCHHHHHHHCGG-GGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHcCCCHHHHHHhCch-hhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHH
Confidence 347899998888777665 8889999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhCccc-cccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCC------hhhHH
Q 045903 116 VKIINCRPRF-LSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGIS------RHDLI 188 (385)
Q Consensus 116 ~~il~~~P~i-L~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~------~~~i~ 188 (385)
++++.++|++ ++.+.++++.|+++||+++|++.+++++++.++|++|++++|+ +++++++|+++|++ ++.|.
T Consensus 104 ~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~~~p~~~I~ 182 (343)
T 3mva_O 104 VNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVR 182 (343)
T ss_dssp HHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCCCcHHHHHH
Confidence 9999999995 4554435899999999999999999999999999999999987 59999999988774 78999
Q ss_pred HHHhhCCcccccCC-CChhHHHHHH-hhCCCcch--hhHHH-HHHHHHhCcHHHHHHHHHHHH----HcCCCHHHHHHHH
Q 045903 189 PMLMSRPTLIPRTS-LNDQKMEYIS-RTQVSRAS--KMYKY-VVTLIAISRIETIREKVANLE----KFGMSEDEIWSLF 259 (385)
Q Consensus 189 ~ll~~~P~il~~~~-~~~~kv~~L~-~lG~~~~~--~~~~~-~p~il~~s~~~~l~~kv~~L~----~~G~s~~ev~~mv 259 (385)
+++.++|.+++.+. ...++++|+. ++|+++++ .++.. .|.+++.+ .+.|+++++++. ++||+.+|+..|+
T Consensus 183 ~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~~lG~s~~ev~~~v 261 (343)
T 3mva_O 183 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLFSLGCTEEEVQKFV 261 (343)
T ss_dssp HHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999874 4578899998 59999976 33332 34667776 478999987776 6999999999999
Q ss_pred HhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccH
Q 045903 260 GRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNE 339 (385)
Q Consensus 260 ~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se 339 (385)
.++|++|++|.++++++++||++ ||++.++|+++|++|+||+| ||+|||.+ |+++|+.. . .+..++|++||
T Consensus 262 ~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~---L~~~g~~~---~-~~~~~~l~~s~ 332 (343)
T 3mva_O 262 LSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKE---LVNAGCNL---S-TLNITLLSWSK 332 (343)
T ss_dssp HTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHH---HHTTTCCS---S-SSCGGGGGSCH
T ss_pred HhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHH---HHHCCCCC---C-CCcchhhcCCH
Confidence 99999999999999999999999 99999999999999999999 99999965 69999853 1 22239999999
Q ss_pred HhHHHhhcc
Q 045903 340 KRFLKVFIH 348 (385)
Q Consensus 340 ~~F~~~~v~ 348 (385)
++|.++|.+
T Consensus 333 ~~F~~~~~~ 341 (343)
T 3mva_O 333 KRYEAKLKK 341 (343)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999854
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=4.7e-48 Score=366.42 Aligned_cols=255 Identities=18% Similarity=0.312 Sum_probs=235.6
Q ss_pred hHHHHHHHhCCCChHHHHHHHHhCCCccccCcc-cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHH
Q 045903 64 KNSTEVLKKWGCSDSDITKLFARRPTLQKADAL-NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLI 142 (385)
Q Consensus 64 ~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e-~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~ 142 (385)
+.++++|.++|++.++|.+....+|.+|.++++ ++.++++||+++|++.++|+++++++|++|++++++ +.|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 358999999999999997777777777999997 799999999999999999999999999999999997 999999999
Q ss_pred hhhcChhhHhhhhhhCCcccccCccccHHHHHHHH-HHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchh
Q 045903 143 KLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALY-EQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASK 221 (385)
Q Consensus 143 ~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L-~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~ 221 (385)
++|++++++++++.++|++|++++++ ++++++|| +++|++.+++.+++.++|++++.+
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s-------------------- 143 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGS-------------------- 143 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSC--------------------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeec--------------------
Confidence 99999999999999999999999985 99999999 589999999999999999999864
Q ss_pred hHHHHHHHHHhCcHHHHHHHHHHH-HHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCCcccc
Q 045903 222 MYKYVVTLIAISRIETIREKVANL-EKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFN 300 (385)
Q Consensus 222 ~~~~~p~il~~s~~~~l~~kv~~L-~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~ 300 (385)
.+.++++++++ .++||+.+|+.+|+.++|++|++|.++++++++||+++||++.++|+++|++|+|
T Consensus 144 -------------~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~ 210 (270)
T 3m66_A 144 -------------LEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNT 210 (270)
T ss_dssp -------------SHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGS
T ss_pred -------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhC
Confidence 26788999976 5899999999999999999999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccHHhHHHhhcccCCCCc
Q 045903 301 NLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDA 354 (385)
Q Consensus 301 Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se~~F~~~~v~~~~~~~ 354 (385)
|+| ||+|||.++++|.++|+.+.-...+++.+++.+||++|+++|++.++||.
T Consensus 211 Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey 263 (270)
T 3m66_A 211 RLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDF 263 (270)
T ss_dssp CHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHH
T ss_pred CHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHH
Confidence 999 99999999999999999753112367788999999999999999997653
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=292.82 Aligned_cols=227 Identities=15% Similarity=0.222 Sum_probs=200.2
Q ss_pred cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHH
Q 045903 97 NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVAL 176 (385)
Q Consensus 97 ~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~ 176 (385)
++...+..|.++|+++++|+++++++|.++.. ++.+.+.||..+|++.++|+++|.++|++|+++++ +|+++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 47788999999999999999999999999854 47788999999999999999999999999999997 59999999
Q ss_pred HHHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHHH
Q 045903 177 YEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDEI 255 (385)
Q Consensus 177 L~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~ev 255 (385)
|+++|++.+++.+++.++|++|+++ .+.+..++.+|. ++||+.++|
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s---------------------------------~e~i~~~v~~L~~~lGfS~~ev 166 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMR---------------------------------QQDINDTVRLLKEKCLFTVQQV 166 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSC---------------------------------HHHHHHHHHHHHHTSCCCHHHH
T ss_pred HHHcCCCHHHHHHHHHhCchhhccC---------------------------------hHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999753 367888888886 799999999
Q ss_pred HHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCCccccCcccccHHHHHHHHHHHHCCCCcc----cccCCcc
Q 045903 256 WSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPE----IKGLPAI 331 (385)
Q Consensus 256 ~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~----i~~~~~l 331 (385)
..||.++|+||++|.++|++|++||+++||++.++|++ |++|+||++ ||+|||.+|+.|....+.+. +...|++
T Consensus 167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL 244 (335)
T 4fp9_B 167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL 244 (335)
T ss_dssp HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence 99999999999999999999999999999999999997 999999999 99999999866644322111 1123689
Q ss_pred hhhhcccHHhHHHhhcccCCCCchHHHHHHHHh
Q 045903 332 LSALRMNEKRFLKVFIHCHPQDAADELMAVYKT 364 (385)
Q Consensus 332 ~~~L~~Se~~F~~~~v~~~~~~~~~~l~~~y~~ 364 (385)
.+++..||+.|+.++.+.+.++. ..+.+.+.+
T Consensus 245 ~~il~~sd~~F~~~vA~~s~eey-~~F~k~~~~ 276 (335)
T 4fp9_B 245 KDILRVSEAEFLARTACTSVEEF-QVFKKLLAR 276 (335)
T ss_dssp HHHTTSCHHHHHHHTSCCCHHHH-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhcCHHHH-HHHHHHHHh
Confidence 99999999999999999998875 456666644
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.3e-36 Score=295.56 Aligned_cols=277 Identities=16% Similarity=0.195 Sum_probs=237.8
Q ss_pred CCCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHH
Q 045903 59 SDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERV 138 (385)
Q Consensus 59 ~~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v 138 (385)
++..+++++++|.++|++.++ +++.+|.++..++++..++++||+++|++.++|++++.++|++|..+. +++.|++
T Consensus 15 ~~~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l 90 (343)
T 3mva_O 15 EPLKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRW 90 (343)
T ss_dssp -----CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHH
T ss_pred CccccHHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHH
Confidence 456788999999999999665 577899999999999999999999999999999999999999999995 5899999
Q ss_pred HHHHhhhcChhhHhhhhhhCCcccccCcc-ccHHHHHHHHHHcCCChhhHHHHHhhCCcccccCC-CChhHHHHHHhhCC
Q 045903 139 DFLIKLFGSREMLCKAIVRNPSLLTYDLD-KTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTS-LNDQKMEYISRTQV 216 (385)
Q Consensus 139 ~fL~~~g~~~~~v~~il~~~P~lL~~s~e-~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~~-~~~~kv~~L~~lG~ 216 (385)
+||+++|+++++++++|.++|++|..+.+ ++++|+++||+++|++.++|++++.++|++++.+. ...++++++.++|+
T Consensus 91 ~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv 170 (343)
T 3mva_O 91 DLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGL 170 (343)
T ss_dssp HHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCC
Confidence 99999999999999999999995544444 48999999999999999999999999999999874 33678899998877
Q ss_pred C-----cch---hhHHHHHHHHHhCcHHHHHHHHHHHHH-cCCCHHHHHHHHHhCC-CccccCHHHHHHHHHHHHH---h
Q 045903 217 S-----RAS---KMYKYVVTLIAISRIETIREKVANLEK-FGMSEDEIWSLFGRSP-LLLTLSVDKVQRNMTFVVG---T 283 (385)
Q Consensus 217 ~-----~~~---~~~~~~p~il~~s~~~~l~~kv~~L~~-~G~s~~ev~~mv~~~P-~lL~~s~e~l~~k~~fL~~---~ 283 (385)
+ +.+ .++...|.+++.+ +++++++++||++ +|++.+++..++.+.| .+++++.+.++++++|+.+ +
T Consensus 171 ~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~ 249 (343)
T 3mva_O 171 SLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS 249 (343)
T ss_dssp HTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHT
T ss_pred CcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHH
Confidence 4 232 5778889999998 7999999999994 9999999999999865 7999999999999999886 6
Q ss_pred cCCChhhH----hhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccHHhHHHhh
Q 045903 284 MKMPANVI----LEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVF 346 (385)
Q Consensus 284 mg~~~~~i----~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se~~F~~~~ 346 (385)
+|++.++| .++|++|++|.| .|++++.++ .++|+... .......+|.+|-++-..|+
T Consensus 250 lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl---~~mg~~~~--~i~~~P~~l~~sleri~~R~ 310 (343)
T 3mva_O 250 LGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCL---MEENISIS--QIIENPRVLDSSISTLKSRI 310 (343)
T ss_dssp TTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHH---HTTTCCHH--HHHHSGGGGGSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHH---HHcCCCHH--HHHhCCHHHhcCHHHHHHHH
Confidence 89998864 789999999999 599999986 44898542 23456788889977877777
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.96 E-value=1.3e-29 Score=239.69 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=190.0
Q ss_pred HHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHH
Q 045903 98 LRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALY 177 (385)
Q Consensus 98 l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L 177 (385)
=.+.+++|.++|++.++|.+....+|.+|+.++++++.|+++||.++|++++++++++.++|.+|++++|+ ++|+++||
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 35889999999999999998888888889999999999999999999999999999999999999999998 99999999
Q ss_pred HHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHH-HHcCCCHHHHH
Q 045903 178 EQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANL-EKFGMSEDEIW 256 (385)
Q Consensus 178 ~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L-~~~G~s~~ev~ 256 (385)
+++|++.+++++++.++|++|+.+ .+++++++++| .++|++.+++.
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s---------------------------------~~~l~~~v~~L~~~lG~~~~~i~ 130 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFS---------------------------------VERLDNRLGFFQKELELSVKKTR 130 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSC---------------------------------HHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCC---------------------------------HHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999753 25699999999 58999999999
Q ss_pred HHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhH----hhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcch
Q 045903 257 SLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVI----LEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAIL 332 (385)
Q Consensus 257 ~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i----~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~ 332 (385)
+++.++|.++++|.++++++++|+..++|++.++| .++|++|++|.+ +|+||+.++ ..+.|+... ......
T Consensus 131 ~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL--~~~mg~~~~--~i~~~P 205 (270)
T 3m66_A 131 DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKM-KLTETFDFV--HNVMSIPHH--IIVKFP 205 (270)
T ss_dssp HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHH--HTTSCCCHH--HHHHCG
T ss_pred HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHH-HHHHHHHHH--HHHhCCCHH--HHHhCc
Confidence 99999999999999999999999888899998864 689999999996 999999986 367898542 234557
Q ss_pred hhhcccHHhHHHhh
Q 045903 333 SALRMNEKRFLKVF 346 (385)
Q Consensus 333 ~~L~~Se~~F~~~~ 346 (385)
.+|.+|-++-..|+
T Consensus 206 ~~l~~Sleri~pR~ 219 (270)
T 3m66_A 206 QVFNTRLFKVKERH 219 (270)
T ss_dssp GGGGSCHHHHHHHH
T ss_pred hHhhCCHHHHHHHH
Confidence 88889987888876
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=215.82 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=168.1
Q ss_pred CCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHH
Q 045903 61 NHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDF 140 (385)
Q Consensus 61 ~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~f 140 (385)
.+++.++..|.++||++++|++++..+|.++ ..++.+++.+|.++|++.++|++||.++|++|+.+++ +|.++++|
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 3567799999999999999999999999986 3568899999999999999999999999999999986 79999999
Q ss_pred HHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHH-HcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcc
Q 045903 141 LIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYE-QVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRA 219 (385)
Q Consensus 141 L~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~-~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~ 219 (385)
|+++|++.+++.+++.++|.+|+++.++ +..++.+|+ ++|++.++|..++.++|++|+.+
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S------------------ 180 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED------------------ 180 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC------------------
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC------------------
Confidence 9999999999999999999999999874 999999986 79999999999999999999753
Q ss_pred hhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903 220 SKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM 286 (385)
Q Consensus 220 ~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~ 286 (385)
.+.|++|++||. +||++.++|. + |.+|+||.++|+++..||.. +|.
T Consensus 181 ---------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 181 ---------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp ---------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred ---------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 478999999998 7999999985 3 99999999999999999997 787
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.38 E-value=1.8e-11 Score=102.16 Aligned_cols=179 Identities=17% Similarity=0.277 Sum_probs=149.8
Q ss_pred hHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhC
Q 045903 136 ERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQ 215 (385)
Q Consensus 136 p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG 215 (385)
..+.-+.-+|.+++-++-++.+.|.++...+- +++.+-.||+.+|+.+..+.+++--||.++...
T Consensus 35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr-------------- 99 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR-------------- 99 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC--------------
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH--------------
Confidence 34445566889999999999999999998876 488899999999999999999999999998742
Q ss_pred CCcchhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhc
Q 045903 216 VSRASKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEY 294 (385)
Q Consensus 216 ~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~ 294 (385)
...+.+.+..|+ ++-|+..++.+++..||.+|.-....+.-++.|-.-.||+..-+|++
T Consensus 100 -------------------qqdindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk- 159 (239)
T 4fzv_B 100 -------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK- 159 (239)
T ss_dssp -------------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-
T ss_pred -------------------HhhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-
Confidence 245677788888 59999999999999999999999989999999888889999999988
Q ss_pred CCccccCcccccHHHHHHHHHHHH------CCCCcccccCCcchhhhcccHHhHHHhhcccCCC
Q 045903 295 PFLLFNNLEAVMKPRVLLAAKVQD------MGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQ 352 (385)
Q Consensus 295 P~~L~~Sle~rIkpR~~~l~~L~~------~Gl~~~i~~~~~l~~~L~~Se~~F~~~~v~~~~~ 352 (385)
..||.||+. .|+.||-+++.|.. +|-. +|.. |-+..+|+.||.+|..+-.+..-+
T Consensus 160 seylqyslt-kikqrhiylerlgryqtpdkkgqt-qipn-pllkdilrvseaeflartactsve 220 (239)
T 4fzv_B 160 SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQT-QIPN-PLLKDILRVSEAEFLARTACTSVE 220 (239)
T ss_dssp TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCC-SSCC-CCHHHHHTSCHHHHHHHTSCSCHH
T ss_pred HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCc-cCCC-hHHHHHHHHhHHHHHHHHhcccHH
Confidence 469999999 89999999887743 3432 3433 778999999999999998866544
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.53 E-value=1.5e-06 Score=72.58 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=119.5
Q ss_pred cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHH
Q 045903 97 NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVAL 176 (385)
Q Consensus 97 ~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~ 176 (385)
.+...+.-|.-+|++++-+.-++.+.|++|...+- .+..+-.||..+|...+.+.+++..+|.++++.-. .+...+..
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrl 109 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRL 109 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHH
Confidence 34566777778999999999999999999998876 68889999999999999999999999999999865 49999999
Q ss_pred HHH-cCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHH
Q 045903 177 YEQ-VGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDE 254 (385)
Q Consensus 177 L~~-lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~e 254 (385)
|++ |-++..++.+++..||.++..+. ..++-++.+-- ++|+...+
T Consensus 110 lkekclftvqqvtkilhscpsvlredl---------------------------------gqleykfqyayfrmgikhpd 156 (239)
T 4fzv_B 110 LKEKCLFTVQQVTKILHSCPSVLREDL---------------------------------GQLEYKFQYAYFRMGIKHPD 156 (239)
T ss_dssp HHHHSCCCHHHHHHHHHHCGGGGTSCT---------------------------------THHHHHHHHHHHTSCCCHHH
T ss_pred HHHhHHhhHHHHHHHHHhCcHHHHHHH---------------------------------hhhhhhHhHHHHHccCCCcc
Confidence 985 88999999999999999986431 23444444333 67777777
Q ss_pred HHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903 255 IWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM 286 (385)
Q Consensus 255 v~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~ 286 (385)
+. -...|.||..+++.+--||.. +|.
T Consensus 157 iv-----kseylqysltkikqrhiyler-lgr 182 (239)
T 4fzv_B 157 IV-----KSEYLQYSLTKIKQRHIYLER-LGR 182 (239)
T ss_dssp HH-----HTTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred hh-----HHHHHHHHHHHHHHHHhHHHH-hcc
Confidence 63 234577888888888877776 664
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=85.81 E-value=1.6 Score=29.85 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHh
Q 045903 84 FARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINC 121 (385)
Q Consensus 84 v~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~ 121 (385)
+..+|.+-.. .+..+++||++.|++.++|...+.+
T Consensus 19 FL~dp~V~~s---p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQS---PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGS---CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcC---CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3445655432 2567888888888888888777654
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.57 E-value=7.4 Score=31.08 Aligned_cols=39 Identities=5% Similarity=0.136 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 240 EKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 240 ~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
+.+.-|.++||+.+++.++++.+ ...+.+.++||....|
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~-------~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLH-------NNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHT-------TTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHhcc
Confidence 56888889999999999998755 2346677888877554
No 11
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.40 E-value=7.2 Score=31.13 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHH------HhCCCChHhHHHHHHhCccccccccchhhHhHH
Q 045903 65 NSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVL------NELGLNSDDLVKIINCRPRFLSSRINICFEERV 138 (385)
Q Consensus 65 ~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L------~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v 138 (385)
..++-|.++||+...+.+.+...-. +....++|| .+.|++..++...+..+..--.. ...-...+
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~-------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~~~v 80 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGA-------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFLQLM 80 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCc-------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCHHHH
Confidence 3788999999999999988876531 344445554 35677777776666543210000 00112345
Q ss_pred HHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHH
Q 045903 139 DFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYE 178 (385)
Q Consensus 139 ~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~ 178 (385)
.-|.++|++.+.+.+++..+ ++++..-+++|-
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~ 112 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM 112 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 55566666666666555443 234555555553
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=84.17 E-value=2.7 Score=40.53 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=30.7
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCC
Q 045903 62 HPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLN 111 (385)
Q Consensus 62 ~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~ 111 (385)
.-+..|+-|.++||++.++.+.++..- .+...-++||-+ |++
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~-------nn~~~A~e~L~~-gip 208 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT-GIP 208 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC-------SSTTHHHHTTTT-SST
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHh-CCC
Confidence 455689999999999999999987642 245566777753 343
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=81.57 E-value=1.8 Score=29.69 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHh
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGR 261 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~ 261 (385)
..+..|++||++-|++.+||..++.+
T Consensus 28 sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 28 SPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56889999999999999999999876
No 14
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.01 E-value=1.3 Score=30.24 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=20.4
Q ss_pred HHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCC
Q 045903 242 VANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMP 287 (385)
Q Consensus 242 v~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~ 287 (385)
++-|.++||+.+.+..++++ .+...|++.++||.+ |+++
T Consensus 13 lq~L~eMGFd~erae~Alk~------Tg~~Gle~AmewL~k-~~~~ 51 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQ------TGSRSIEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHH------HTSCCHHHHHHHHHH-HSCS
T ss_pred HHHHHHcCCCHHHHHHHHHH------hCcccHHHHHHHHHH-hcCC
Confidence 45555666666555555542 111236666666665 5554
No 15
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=77.88 E-value=4.8 Score=28.99 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=23.8
Q ss_pred HhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHh
Q 045903 85 ARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINC 121 (385)
Q Consensus 85 ~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~ 121 (385)
..+|.+-.. .+..+++||++.|++.++|...+.+
T Consensus 25 Lqdp~V~~s---p~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 25 LQNSRVRQS---PLATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HCSTTGGGS---CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCChhhhhC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345655432 2667888888888888888877766
No 16
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=76.90 E-value=37 Score=32.57 Aligned_cols=226 Identities=12% Similarity=0.122 Sum_probs=114.6
Q ss_pred cccccchHHHHHhhchhccccCCCCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHH
Q 045903 37 YSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLV 116 (385)
Q Consensus 37 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~ 116 (385)
.-++|-+....+.|.++ +......--+-|.++||+..||-.+- ++|.-|..=..+....+.-| .+++.++|.
T Consensus 8 l~~lgys~~q~~k~k~~-----~~s~va~~h~~l~~~g~t~~~i~~is-~~~~al~~va~~y~~l~aal--~~lt~~~iV 79 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIKPK-----VRSTVAQHHEALVGHGFTHAHIVALS-QHPAALGTVAVKYQDMIAAL--PEATHEAIV 79 (463)
T ss_dssp GGGGTCCHHHHHHHCGG-----GHHHHHHHHHHHHHTTCCHHHHHHHT-TSTHHHHHHHTTHHHHHHHS--TTCCHHHHH
T ss_pred HHHhccCHHHHHHhhHH-----HHHHHHHHHHHHHhcCCCHHHHHHhh-ccHhHHHHHHHhhHHHHhhc--cccCHHHHH
Confidence 34577777666666554 22222223456889999999998754 44543221111222222222 578888888
Q ss_pred HHHHhCccccccccchhhHhHHHHHHhh--hcChhhHhhhhhhCCccccc-CccccHHHHHHHHHH--cCCChhhHHHHH
Q 045903 117 KIINCRPRFLSSRINICFEERVDFLIKL--FGSREMLCKAIVRNPSLLTY-DLDKTIKPVVALYEQ--VGISRHDLIPML 191 (385)
Q Consensus 117 ~il~~~P~iL~~~~~~~l~p~v~fL~~~--g~~~~~v~~il~~~P~lL~~-s~e~~l~~~v~~L~~--lGl~~~~i~~ll 191 (385)
.|-..+-...... .+.+...-|... +++.+++..|-.+- +. -+| .+.....-|.. +|++.+++..+-
T Consensus 80 ~ia~~~~g~~Al~---a~~~~~~~L~~~p~~l~~~qiv~IA~~G----g~~Ale-av~~~~~~L~~apl~Lsp~qvVaIA 151 (463)
T 4hpz_A 80 GVGKQWSGACALE---ALLTVAGELRGPPLQLDTGQLLKIAKRG----GVTAVE-VHHTWRNALTGAPLNLTPDQVVAIA 151 (463)
T ss_dssp HHHTSTTTTHHHH---HHHHHHHHHHSTTTCCCHHHHHHHHHHH----HHHHHH-HHHHTHHHHHSTTTCCCHHHHHHHH
T ss_pred HHHhccchHHHHH---HHHHHHHHhhcCccCCCHHHHHHHHhhC----cHHHHH-HHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 8776654432221 122222223322 45666666654421 00 111 12222233333 678888887664
Q ss_pred hhCCcccccCCCChhHHHH-------HH-hhCCCcchhhHHHHHHHHHhCc----HHHHHHHHHHHHH-cCCCHHHHHHH
Q 045903 192 MSRPTLIPRTSLNDQKMEY-------IS-RTQVSRASKMYKYVVTLIAISR----IETIREKVANLEK-FGMSEDEIWSL 258 (385)
Q Consensus 192 ~~~P~il~~~~~~~~kv~~-------L~-~lG~~~~~~~~~~~p~il~~s~----~~~l~~kv~~L~~-~G~s~~ev~~m 258 (385)
...-. .+.+++ |. ..|++++.. .+ +-+..- -+.++.....|.. .||+.++|..+
T Consensus 152 sn~GG--------kqALeaV~~llpvL~~a~~Ls~~qV-Va----IAsn~GGkQALeaV~~llpvl~~~~~Ls~aqVVaI 218 (463)
T 4hpz_A 152 SNIGG--------KQALETVQRLLPVLCQDHGLTPQQV-VA----IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 218 (463)
T ss_dssp SSTTH--------HHHHHHHHHHHHHHHHHHCCCHHHH-HH----HHTSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hcCcc--------HHHHHHHHHHHHHHhhhcCCCHHHH-HH----HhhcCchHHHHHHHHHHHHHhhccccCCHHHHHHH
Confidence 33222 444443 22 257776551 11 111111 2455666666654 89999999866
Q ss_pred HHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhh
Q 045903 259 FGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILE 293 (385)
Q Consensus 259 v~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~ 293 (385)
-...-. ..-.+.++.-..-|....|++.++|+.
T Consensus 219 Asn~GG--kQALeaV~~llpvl~~~~gls~aqVVa 251 (463)
T 4hpz_A 219 ASHDGG--KQALETVQRLLPVLCQDHGLTPQQVVA 251 (463)
T ss_dssp HSSTTH--HHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred hhcccc--HHHHHHHHhhhhhhhhhccCCHHHHHH
Confidence 531100 011234555555666567999888775
No 17
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.12 E-value=6 Score=29.58 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM 286 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~ 286 (385)
.++|+-|.+|||+++++.++++..- ..+.+.++||.+..|-
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCCC
Confidence 5678888899999999988887542 2377789999987773
No 18
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=71.93 E-value=4.1 Score=29.33 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
..+..|++||++-|++.+||..++.+.
T Consensus 33 sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 33 SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 568899999999999999999999873
No 19
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.10 E-value=5.3 Score=26.15 Aligned_cols=35 Identities=6% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 240 EKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 240 ~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
..++-|.++||+.+++.++++.. + .+...++||.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHc
Confidence 45666777777777777777654 1 35566666654
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.87 E-value=5.6 Score=26.41 Aligned_cols=40 Identities=8% Similarity=0.209 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
..-.++++-|.++||+++++..+++.+- . .+...++||.+
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~----~---n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASY----N---NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTT----S---CSHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhC----C---CHHHHHHHHHh
Confidence 4457788999999999999999998652 2 35667888876
No 21
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=68.49 E-value=4.2 Score=39.14 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHH
Q 045903 97 NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLI 142 (385)
Q Consensus 97 ~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~ 142 (385)
.....|+.|.++|+++.++.+.+...- ++....++||.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~ 204 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLL 204 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 578899999999999999999888643 24555566664
No 22
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=66.52 E-value=4.9 Score=27.14 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHh
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGR 261 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~ 261 (385)
+.+...|+-|.++||+++++.+++..
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45568899999999999999988864
No 23
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.68 E-value=8.5 Score=26.92 Aligned_cols=40 Identities=13% Similarity=0.331 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
.++++-|.+|||+++++.++++.+- . .+...++||.+.+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~----~---nve~A~e~L~~~~~ 49 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATN----N---SLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT----S---CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC----C---CHHHHHHHHHhCCC
Confidence 4567788889999999888888762 1 37778888887543
No 24
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.30 E-value=5.2 Score=25.61 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
.++++-|.++||+++++.+++..+ +. .+...++||.+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~----~~---n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC----NW---DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH----TS---CHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh----Cc---CHHHHHHHHHc
Confidence 356788889999999988888754 12 35556677664
No 25
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=62.55 E-value=13 Score=30.82 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=32.3
Q ss_pred hCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhC
Q 045903 86 RRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCR 122 (385)
Q Consensus 86 ~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~ 122 (385)
..|..+..+++++...+.-|..-|+++++||-++...
T Consensus 23 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 23 RSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 4688888889999999999999999999999988754
No 26
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=61.93 E-value=9.7 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Q 045903 237 TIREKVANLEKFGMSEDEIWSLFGR 261 (385)
Q Consensus 237 ~l~~kv~~L~~~G~s~~ev~~mv~~ 261 (385)
.+...++.|.++||+.+++.+++..
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4677889999999999999888764
No 27
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.87 E-value=5.1 Score=28.06 Aligned_cols=40 Identities=10% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
.+.|+.|.+|||+.++..++++... ..+.+..|||...+.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 5568899999999999999888643 347788899887543
No 28
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=60.46 E-value=10 Score=23.43 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
.++++-|.++||+.++..+++..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456777888899888887777654
No 29
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=59.42 E-value=11 Score=25.62 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHh
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGR 261 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~ 261 (385)
+.....|.-|.++||+.+++.+++..
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHH
Confidence 45677899999999999999988763
No 30
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.22 E-value=9.9 Score=27.63 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM 286 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~ 286 (385)
...++-|.+|||+.+++.++++.+-. ..+...++||.+.+.-
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCCC
Confidence 34567788888888888888874421 1367788898886543
No 31
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.76 E-value=11 Score=27.20 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHh
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGT 283 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~ 283 (385)
.++++.|.++||+.+++.++++.+- ..+...++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 3456777778888888777776542 1456677777763
No 32
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.62 E-value=13 Score=26.20 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhc
Q 045903 241 KVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTM 284 (385)
Q Consensus 241 kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~m 284 (385)
.++-|.+|||+.+++.++++.+-. ..+...++||.+.+
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSHS 59 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhCC
Confidence 456677778887777777765321 23666777777643
No 33
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=57.49 E-value=13 Score=30.85 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=32.0
Q ss_pred hCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhC
Q 045903 86 RRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCR 122 (385)
Q Consensus 86 ~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~ 122 (385)
..|..+..+++++...+.-|..-|+++++||-++...
T Consensus 21 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 21 NAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 4688888889999999999999999999999988753
No 34
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=57.25 E-value=13 Score=25.04 Aligned_cols=41 Identities=7% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 235 IETIREKVANLEKFGM-SEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 235 ~~~l~~kv~~L~~~G~-s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
++...++++-|.+||| +++.+.++++.+- ..+...++||.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG-------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT-------SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 4667888999999999 8888777776431 146677888776
No 35
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.95 E-value=11 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=27.6
Q ss_pred HHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHh
Q 045903 66 STEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNE 107 (385)
Q Consensus 66 ~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~ 107 (385)
.|+-|.++||+..+..+.++.. -.++...++||=+
T Consensus 22 ~V~~LvsMGFs~~qA~kALKat-------~~NvErAaDWLFS 56 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKKK-------GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH-------CSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHh
Confidence 6888999999999999988764 3467788887754
No 36
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.57 E-value=11 Score=25.53 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Q 045903 238 IREKVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 238 l~~kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
...+|+-|.++||+++++.+++...
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a 33 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3456888999999999998887643
No 37
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=54.54 E-value=1.7e+02 Score=30.56 Aligned_cols=201 Identities=12% Similarity=0.152 Sum_probs=89.6
Q ss_pred hCCCChHHHHHHHHhCCCccccCcccHHHHHHHHH-hCCCChHhHHHHHHhCccccccccchhhHhHHHH-HHhhhcChh
Q 045903 72 KWGCSDSDITKLFARRPTLQKADALNLRFKLSVLN-ELGLNSDDLVKIINCRPRFLSSRINICFEERVDF-LIKLFGSRE 149 (385)
Q Consensus 72 ~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~-~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~f-L~~~g~~~~ 149 (385)
.+|++++||-.|-.+.---- -.+.+...+-.|- ..|++++++..|-+.+---=. ++ .+....-- -...|++++
T Consensus 252 ~~gls~~qvVaIAsn~GGkQ--ALeaV~~llp~L~~~~gls~~qvvaIAsn~GGkQA--Le-tV~~llp~L~~~~gltp~ 326 (1047)
T 3ugm_A 252 AHGLPPDQVVAIASNIGGKQ--ALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQA--LE-TVQRLLPVLCQAHGLTPD 326 (1047)
T ss_dssp HSCCCHHHHHHHHSSTTHHH--HHHHHHHHSHHHHHHHCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHHHTCCCHH
T ss_pred ccCCCHHHHHHHHhcCcchH--HHHHHHHHhhhhhccccCCHHHHHHHHhcCchHHH--HH-HHHHHHHHHHhhcCCCHH
Confidence 36777777666554221000 0011222222232 367777777776554321100 01 11111111 223577777
Q ss_pred hHhhhhhhCCcccccCccccHHHHHHHHH-HcCCChhhHHHHHhhCCcccccCCCChhHHHH-------HHh-hCCCcch
Q 045903 150 MLCKAIVRNPSLLTYDLDKTIKPVVALYE-QVGISRHDLIPMLMSRPTLIPRTSLNDQKMEY-------ISR-TQVSRAS 220 (385)
Q Consensus 150 ~v~~il~~~P~lL~~s~e~~l~~~v~~L~-~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~-------L~~-lG~~~~~ 220 (385)
+|..|-..+--- --+| .+......|+ ..|++.++|..+-...- -.+.++. |.. .|++++.
T Consensus 327 qvVaIAsn~GGk--QALe-~V~~llpvL~~~~gls~~qvVaIAsn~G--------GkQALe~V~~llp~L~~~~gls~~~ 395 (1047)
T 3ugm_A 327 QVVAIASHDGGK--QALE-TVQRLLPVLCQAHGLTPDQVVAIASNGG--------GKQALETVQRLLPVLCQAHGLTPDQ 395 (1047)
T ss_dssp HHHHHHSSSSCH--HHHH-HHHHHHHHHHTTSCCCHHHHHHHHSSTT--------HHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HheeecccCccH--HHHH-HHHHHhhhhhhhccCCHHHhhhhhhcCc--------hHHHHHHHHHhhhhhhhhcCCCHHH
Confidence 777665443211 0112 2333334444 47888888876543221 2344433 222 4777654
Q ss_pred hhHHHHHHHHHh-CcHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhh
Q 045903 221 KMYKYVVTLIAI-SRIETIREKVANLE-KFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILE 293 (385)
Q Consensus 221 ~~~~~~p~il~~-s~~~~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~ 293 (385)
. .+.+- .+- .--+++.+-...|. +.||+.++|.+|-...-. ....|.+.+.+.-|....|++.++|++
T Consensus 396 v-vaiA~--~GG~qALe~V~~L~p~l~~~~glt~~qvv~IAsn~GG--kQALe~V~~llp~L~~~~glt~aqvVa 465 (1047)
T 3ugm_A 396 V-VAIAS--NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG--KQALETVQRLLPVLCQTHGLTPAQVVA 465 (1047)
T ss_dssp H-HHHHH--HTHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHSSTTT--HHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred H-HHHhc--ccchhHHHHHhhccchhhhhcCCCHHHhhhhhccCch--HHHHHHHHHHhHHhhcccCCCHHHHHH
Confidence 1 11110 010 00122333222333 588888888776643211 011334555555666566777776654
No 38
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.35 E-value=12 Score=26.20 Aligned_cols=38 Identities=5% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHh
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGT 283 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~ 283 (385)
.+.++-|.+|||+.+++.++++.+= . .+...++||.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~----~---nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG----N---NLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT----S---CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----C---CHHHHHHHHHHC
Confidence 3567888899999999988887652 2 467788888874
No 39
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.63 E-value=9.2 Score=27.78 Aligned_cols=39 Identities=8% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 237 TIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 237 ~l~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
...++|+-|.+|||+++++..+++.+= . .+...++||.+
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~----~---nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAAD----D---DLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHT----S---CHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhC----C---CHHHHHHHHHH
Confidence 346778889999999999998888541 2 46677888886
No 40
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.38 E-value=16 Score=24.77 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=23.0
Q ss_pred CCCCCchHHHHHHHhCCCChHHHHHHHHh
Q 045903 58 YSDNHPKNSTEVLKKWGCSDSDITKLFAR 86 (385)
Q Consensus 58 ~~~~~~~~~l~~L~~~G~s~~~i~~iv~~ 86 (385)
..++.+++-++-|.++||+++++.+.+..
T Consensus 4 ~~~~~~e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 4 GSSGQLSSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp SCCSCSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35667777888999999999888887754
No 41
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.72 E-value=15 Score=27.29 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
...++-|.+|||+.+++.++++.+ + ..+...++||.+.++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t----~---~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN----H---MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT----T---SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh----C---CCHHHHHHHHHHCCC
Confidence 345677888899998888888754 1 246678888888554
No 42
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=51.16 E-value=16 Score=24.61 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHhCCCChHHHHHHHHh
Q 045903 59 SDNHPKNSTEVLKKWGCSDSDITKLFAR 86 (385)
Q Consensus 59 ~~~~~~~~l~~L~~~G~s~~~i~~iv~~ 86 (385)
.++++++-++-|.++||+++++.+.+..
T Consensus 7 ~~~~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 7 ALENVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp ----CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456777888899999999888887764
No 43
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.55 E-value=15 Score=25.80 Aligned_cols=39 Identities=5% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 241 KVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 241 kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
.++-|.++||+.+.+.+++...- -..+...++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~------n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATG------RKTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHT------SCCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC------CCCHHHHHHHHHhCCC
Confidence 45667778888888877776331 1246778888887544
No 44
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=49.68 E-value=19 Score=26.74 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 240 EKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 240 ~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
..++-|.+|||+.+.+.+++...- -..+...++||.+.+.
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~------n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINTS------NAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT------TCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHc------CCCHHHHHHHHHhCCC
Confidence 456677788888888877765331 1146677888887544
No 45
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=45.97 E-value=15 Score=24.62 Aligned_cols=40 Identities=8% Similarity=0.243 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 236 ETIREKVANLEKFGM-SEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~-s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
+....+++-|.++|| +++.+.+++...- ..+...++||.+
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gn~e~A~e~L~~ 50 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATG-------GDINAAIERLLG 50 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHT-------TCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 445667778888888 6666666665321 135556666653
No 46
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.65 E-value=22 Score=24.95 Aligned_cols=39 Identities=8% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 241 KVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 241 kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
.++-|.++||+.+++.++++.+- -..+...++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhCCC
Confidence 45667778888888877776321 1236677888887544
No 47
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=43.15 E-value=55 Score=21.81 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=23.3
Q ss_pred HHHHHHHhCCC-ChHHHHHHHHhCCCccccCcccHHHHHHHHHhCC
Q 045903 65 NSTEVLKKWGC-SDSDITKLFARRPTLQKADALNLRFKLSVLNELG 109 (385)
Q Consensus 65 ~~l~~L~~~G~-s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG 109 (385)
..++-|.++|| +.....+++... -.++...+++|.+.+
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t-------~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIAT-------GGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHH-------TSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHHcC
Confidence 35777888888 666655555432 125666677776554
No 48
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=40.78 E-value=32 Score=22.31 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHhCCCccccCHHHHHHHHHHHH
Q 045903 235 IETIREKVANLEKFGMS-EDEIWSLFGRSPLLLTLSVDKVQRNMTFVV 281 (385)
Q Consensus 235 ~~~l~~kv~~L~~~G~s-~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~ 281 (385)
++..+++++-|.++||+ .+.+.++++.. -..+...++||.
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL~~~-------~gnv~~Ave~L~ 44 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAALRRS-------GGSVQGALDSLL 44 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh-------CCCHHHHHHHHH
Confidence 35667888889999986 45556665532 123455566654
No 49
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.04 E-value=21 Score=23.55 Aligned_cols=37 Identities=8% Similarity=-0.000 Sum_probs=25.3
Q ss_pred hHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHh
Q 045903 64 KNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNE 107 (385)
Q Consensus 64 ~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~ 107 (385)
+..++-|.++||+.+++...++..- .++..-++||-+
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTT-------SCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 3467888888888888888776532 245566666654
No 50
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=39.25 E-value=35 Score=24.61 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=8.2
Q ss_pred HHHHHcCCCHHHHHH
Q 045903 243 ANLEKFGMSEDEIWS 257 (385)
Q Consensus 243 ~~L~~~G~s~~ev~~ 257 (385)
+.|+++|+...||.+
T Consensus 42 ~~Lr~LGi~eGDIIr 56 (72)
T 3idw_A 42 SMLRTLGLREGDIVR 56 (72)
T ss_dssp HHHHHTTCCHHHHHH
T ss_pred HHHHHcCCchhhHHH
Confidence 355566666555543
No 51
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=36.04 E-value=12 Score=24.49 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 240 EKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 240 ~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
+.|+-|.++||++..+.+++..+- .......+||.+
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~-------~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACE-------KNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTT-------SCHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHh
Confidence 345667778888888877765442 223445566654
No 52
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.70 E-value=31 Score=24.54 Aligned_cols=41 Identities=5% Similarity=-0.001 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCHH-HHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 235 IETIREKVANLEKFGMSED-EIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 235 ~~~l~~kv~~L~~~G~s~~-ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
++..+..++-|.++||+.. ...++++. +-..+...++||.+
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~a-------t~Gnve~Ave~L~~ 57 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIA-------TDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHH-------TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHH-------cCCCHHHHHHHHHh
Confidence 3556677777777777544 32444432 22345667777766
No 53
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=34.61 E-value=37 Score=23.32 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 235 IETIREKVANLEKFGMS-EDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 235 ~~~l~~kv~~L~~~G~s-~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
++..+++++-|.++||+ ++.+.++++.. --.+...++||.+
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~-------~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRS-------GGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHH-------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHh-------CCCHHHHHHHHHh
Confidence 46778889999999985 55656666522 1235566777765
No 54
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.78 E-value=2.2e+02 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Q 045903 239 REKVANLEKFGMSEDEIWSLFGR 261 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~ 261 (385)
++-+.||..-||+.+.|..++..
T Consensus 140 ~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 140 NKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 34457999999999999888764
No 55
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=32.35 E-value=24 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=28.2
Q ss_pred hHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCC
Q 045903 64 KNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLN 111 (385)
Q Consensus 64 ~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~ 111 (385)
...+.-|..-|++++||+.+++..-.|=....-+=....+.|++-|+.
T Consensus 34 e~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~gla 81 (151)
T 3u5c_N 34 IEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLA 81 (151)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCC
Confidence 336777889999999999998864222111111111234456666664
No 56
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=32.22 E-value=28 Score=28.84 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCC
Q 045903 65 NSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLN 111 (385)
Q Consensus 65 ~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~ 111 (385)
..+.-|..-|++++||+-+++..-.|=....-+=...++.|++.|+.
T Consensus 37 ~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~gla 83 (153)
T 2xzm_O 37 DLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCA 83 (153)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCC
Confidence 36677889999999999998865332111111112234566666664
No 57
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=32.10 E-value=1.6e+02 Score=22.87 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.0
Q ss_pred HhCCCChHhHHHHHHhCc
Q 045903 106 NELGLNSDDLVKIINCRP 123 (385)
Q Consensus 106 ~~lG~~~~~I~~il~~~P 123 (385)
+.+|++..+|..|-..+|
T Consensus 43 R~LGlse~dId~I~~~~p 60 (115)
T 2o71_A 43 LSLGLSQTDIYRCKANHP 60 (115)
T ss_dssp HHTTCCHHHHHHHHHHCT
T ss_pred HHcCCCHHHHHHHHHHCC
Confidence 357888888888888887
No 58
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=31.84 E-value=43 Score=23.23 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.4
Q ss_pred hHHHHHHHhCCCChHHHHHHHHh
Q 045903 64 KNSTEVLKKWGCSDSDITKLFAR 86 (385)
Q Consensus 64 ~~~l~~L~~~G~s~~~i~~iv~~ 86 (385)
+.+++.|.++|++..++.+++..
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 59
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.83 E-value=1.1e+02 Score=20.96 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCCccccCcccccHHHHHHHHHHHHCCCC
Q 045903 250 MSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLV 322 (385)
Q Consensus 250 ~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~ 322 (385)
++++++...|+..-.++ .+.++.++.|.+.+++. ..|+.|+++|++
T Consensus 10 ~~e~~lL~yIr~sGGil---------dI~~~a~kygV~kdeV~------------------~~LrrLe~KGLI 55 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFL---------DIEHFSKVYGVEKQEVV------------------KLLEALKNKGLI 55 (59)
T ss_dssp CCHHHHHHHHHHTTSEE---------EHHHHHHHHCCCHHHHH------------------HHHHHHHHTTSE
T ss_pred ccHHHHHHHHHHcCCEE---------eHHHHHHHhCCCHHHHH------------------HHHHHHHHCCCe
Confidence 45566666666666666 45666677777776653 456678899985
No 60
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.84 E-value=65 Score=23.18 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHh
Q 045903 60 DNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNE 107 (385)
Q Consensus 60 ~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~ 107 (385)
....+..|+-|.++||+.+++...++..- .++..-++||.+
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 34456789999999999999999887531 257777888765
No 61
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.84 E-value=77 Score=24.53 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 236 ETIREKVANLEKF-GMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 236 ~~l~~kv~~L~~~-G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
..+.++|+.|.++ |++++++..++..+=. .+...+++|.+
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lle 77 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 5678999999998 9999999988875421 25557777776
No 62
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.69 E-value=42 Score=28.03 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=31.5
Q ss_pred hCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhCc
Q 045903 86 RRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRP 123 (385)
Q Consensus 86 ~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~P 123 (385)
..|..+..++|++...|.-|..-|+++++||-++....
T Consensus 21 ~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~ 58 (158)
T 3j20_Q 21 APPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQY 58 (158)
T ss_dssp SCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccC
Confidence 45788888888888999999889999999998887543
No 63
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=27.32 E-value=78 Score=21.89 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
+...+-++-|..+||+..|+.+++...
T Consensus 15 ~~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 15 EAAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345678889999999999999988764
No 64
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=27.23 E-value=2.4e+02 Score=29.52 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=20.9
Q ss_pred HcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHh
Q 045903 247 KFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVIL 292 (385)
Q Consensus 247 ~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~ 292 (385)
..|+|.++|..|-...-- ..-.|.+..-..-+....|++.++|+
T Consensus 591 a~gLS~~qVVaIAsn~GG--kQALeaV~~llpvL~~~~~Ls~~qVV 634 (1047)
T 3ugm_A 591 AHGLTQVQVVAIASNIGG--KQALETVQRLLPVLCQAHGLTPAQVV 634 (1047)
T ss_dssp HHCCCSHHHHTTTTSTTS--HHHHHHHHHHHHHHHHHSCCCSHHHH
T ss_pred HhCCCHHHeeeeccCCch--HHHHHHHHHhhHHHHhhccCCHHHee
Confidence 477777777644321100 00123344444455555666665544
No 65
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.06 E-value=2.2e+02 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=13.8
Q ss_pred HhCCCChHhHHHHHHhCc
Q 045903 106 NELGLNSDDLVKIINCRP 123 (385)
Q Consensus 106 ~~lG~~~~~I~~il~~~P 123 (385)
+.+|++..+|..|-..+|
T Consensus 43 R~LGlse~dId~I~~~~p 60 (114)
T 2of5_A 43 LSLGLSQTDIYRCKANHP 60 (114)
T ss_dssp HTTTCCHHHHHHHHHHCS
T ss_pred HHcCCCHHHHHHHHHHCC
Confidence 357888888888887887
No 66
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.78 E-value=54 Score=24.35 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhc
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTM 284 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~m 284 (385)
.++++-|.++||+++++.+++..+- ..+...++||.+.+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n-------~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNN-------MNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHCc
Confidence 6788999999999999988885331 24778899999853
No 67
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.16 E-value=65 Score=22.38 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.1
Q ss_pred hHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHh
Q 045903 64 KNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNE 107 (385)
Q Consensus 64 ~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~ 107 (385)
+..|+-|.++||+..++.+.+...- .++..-++||.+
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 4578999999999999888877642 256677777764
No 68
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.01 E-value=62 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Q 045903 238 IREKVANLEKFGMSEDEIWSLFGR 261 (385)
Q Consensus 238 l~~kv~~L~~~G~s~~ev~~mv~~ 261 (385)
+-..|..|+++|||-++|..++..
T Consensus 5 rL~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 5 RLKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345677888999999999998863
No 69
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=25.88 E-value=17 Score=28.62 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHhCCCChHhHHHHHHhCcc
Q 045903 96 LNLRFKLSVLNELGLNSDDLVKIINCRPR 124 (385)
Q Consensus 96 e~l~~~l~~L~~lG~~~~~I~~il~~~P~ 124 (385)
+.....++.|.++|+....++.+..-+|.
T Consensus 50 e~a~~l~e~L~~~~l~~~~~a~IanL~P~ 78 (113)
T 4ayb_F 50 ESAQKVVEELSSIISREDVRAVLASICPI 78 (113)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 33444455566667777767777666664
No 70
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.53 E-value=40 Score=24.44 Aligned_cols=40 Identities=10% Similarity=0.310 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHhCCCccccCHHHHHHHHHHHHH
Q 045903 236 ETIREKVANLEKFGMS-EDEIWSLFGRSPLLLTLSVDKVQRNMTFVVG 282 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s-~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~ 282 (385)
+..+.+++-|++|||+ ++.+.++++.. --.+...++||.+
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t-------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVAT-------DGDIHAAIEMLLG 67 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHT-------TSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHh-------CCCHHHHHHHHHh
Confidence 4566777788888874 56656665532 1235566777775
No 71
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.14 E-value=74 Score=21.33 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=7.1
Q ss_pred hhHHHHHHhhCCCc
Q 045903 205 DQKMEYISRTQVSR 218 (385)
Q Consensus 205 ~~kv~~L~~lG~~~ 218 (385)
.++++.|.+|||+.
T Consensus 10 ~~~l~~L~~MGF~d 23 (54)
T 2dah_A 10 QVQLEQLRSMGFLN 23 (54)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCc
Confidence 44455555555543
No 72
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=24.06 E-value=2.1e+02 Score=21.08 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHHHHc
Q 045903 169 TIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKF 248 (385)
Q Consensus 169 ~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~~~ 248 (385)
.+...-+|-+++|+++.+|..+-..+|+=.. ++.++.|..---.... ..++..-++.|+++
T Consensus 11 ~~~~wK~~~R~LGlse~~Id~I~~~~~~d~~-----Eq~~qmL~~W~~~~g~--------------~a~~~~Li~~Lr~~ 71 (86)
T 3oq9_A 11 TIQEAKKFARENNIKEGKIDEIMHDSIQDTA-----EQKVQLLLCWYQSHGK--------------SDAYQDLIKGLKKA 71 (86)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHHTCTTCCT-----THHHHHHHHHHHHSCS--------------SSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCHhHHHHHHHhCCCChH-----HHHHHHHHHHHHHhCc--------------chHHHHHHHHHHHc
Q ss_pred CCCH--HHHHHHHHh
Q 045903 249 GMSE--DEIWSLFGR 261 (385)
Q Consensus 249 G~s~--~ev~~mv~~ 261 (385)
|+.. +.|..++.+
T Consensus 72 ~l~~~Ad~I~~~l~~ 86 (86)
T 3oq9_A 72 ECRRTLDKFQDMVQK 86 (86)
T ss_dssp TCSSHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHhC
No 73
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.82 E-value=77 Score=21.82 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=26.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHh
Q 045903 63 PKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNE 107 (385)
Q Consensus 63 ~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~ 107 (385)
....++-|.++||+..+..+.++..-. ++..-++||.+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~ 46 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFS 46 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 345788888899999888888876521 35566666643
No 74
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.67 E-value=67 Score=22.27 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=25.8
Q ss_pred hCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHH
Q 045903 72 KWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKI 118 (385)
Q Consensus 72 ~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~i 118 (385)
..|++.+-|.+++...+.-...+++......+..+.+|..+....+-
T Consensus 9 ~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~ 55 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAG 55 (65)
T ss_dssp HHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-----
T ss_pred HHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 46788888888777665111224555555555666777766555443
No 75
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=22.69 E-value=50 Score=27.34 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=26.0
Q ss_pred CcccHHHHHHHHHhCCCChHhHHHHHHhCcc
Q 045903 94 DALNLRFKLSVLNELGLNSDDLVKIINCRPR 124 (385)
Q Consensus 94 ~~e~l~~~l~~L~~lG~~~~~I~~il~~~P~ 124 (385)
+++.+...++.|..+|+...++..|+.-+|.
T Consensus 86 ~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~ 116 (152)
T 2c35_A 86 NRETIASVRSLLLQKKLHKFELACLANLCPE 116 (152)
T ss_dssp SHHHHHHHHHHHHTSSCCHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHhccCCCC
Confidence 5666777778888899999999999999987
No 76
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=22.38 E-value=72 Score=27.47 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
....++|+-|.++||+++++..++.++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456888999999999999998888776
No 77
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=22.01 E-value=43 Score=26.57 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 240 EKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 240 ~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
..++-|.++||+.+++.++++.+ + ..+...++||.+.++
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~----~---~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRAT----N---NNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH----T---SCHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc----C---CCHHHHHHHHHhCCC
Confidence 34556667777777777666633 1 135566777776444
No 78
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=21.84 E-value=98 Score=26.89 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=53.6
Q ss_pred hhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHHHhhCCccccc
Q 045903 133 CFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPR 200 (385)
Q Consensus 133 ~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~ 200 (385)
.|-.+++.|.+++-.-+.+..++...-...+++ +|++.|+-+..--++.+.+++|..-+|.....
T Consensus 31 ~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~---~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l 95 (201)
T 1wlq_C 31 VLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFA---KVKQGVQEMMRKRFEERNVGQIKTVYPMSYRF 95 (201)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHH---HHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCccccHH---HHHHHHHHHhcCCcCHHHHHHHHHhccCceEE
Confidence 356677778777777788889888777777775 59999999998999999999999999997653
No 79
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.75 E-value=2e+02 Score=19.81 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=27.7
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHhCCCcc--------ccCHHHHHHHHHHHHHhcCCChhhHh
Q 045903 237 TIREKVANLE-KFGMSEDEIWSLFGRSPLLL--------TLSVDKVQRNMTFVVGTMKMPANVIL 292 (385)
Q Consensus 237 ~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL--------~~s~e~l~~k~~fL~~~mg~~~~~i~ 292 (385)
.+..++..++ ..|++.++++..+.-.+.-+ ..+.+.+..-.+.|-..+|++++++.
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHH
Confidence 3444454444 46666666665553222211 12233344444455555677777664
No 80
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.51 E-value=3.7e+02 Score=22.30 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=18.5
Q ss_pred HHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCC
Q 045903 66 STEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGL 110 (385)
Q Consensus 66 ~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~ 110 (385)
.+.+|..-.-|..++..-+.+. ..+.+.+...|+.|.+.|+
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ 64 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDL 64 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCC
Confidence 3444544444554444433321 2233345555555555544
No 81
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=20.50 E-value=1.2e+02 Score=20.78 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Q 045903 240 EKVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 240 ~kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
.-+.--+++|++.+||...+..+
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33334457999999998877643
Done!