Query 045903
Match_columns 385
No_of_seqs 224 out of 1238
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 11:30:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045903.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045903hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 76.3 0.83 6E-05 27.9 2.5 26 237-262 3-28 (41)
2 d1wiva_ a.5.2.1 (A:) Ubiquitin 68.0 3 0.00022 28.6 4.2 38 239-283 30-67 (73)
3 d1vg5a_ a.5.2.1 (A:) Rhomboid 64.7 2.3 0.00017 29.2 3.1 38 239-283 30-67 (73)
4 d2g3qa1 a.5.2.1 (A:1339-1381) 61.6 2.3 0.00017 25.9 2.1 22 241-262 7-28 (43)
5 d1wjia_ a.5.2.1 (A:) Tudor dom 58.1 5.9 0.00043 26.2 4.1 40 239-285 10-49 (63)
6 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 56.6 4.5 0.00033 25.7 3.1 19 242-260 16-34 (51)
7 d2crna1 a.5.2.1 (A:8-58) Suppr 53.5 7.2 0.00052 24.6 3.7 39 242-286 6-44 (51)
8 d1oqya1 a.5.2.1 (A:160-200) DN 52.5 6.4 0.00046 23.7 3.2 25 63-87 4-28 (41)
9 d1whca_ a.5.2.1 (A:) UBA/UBX 3 49.6 6.7 0.00049 26.0 3.3 40 241-286 12-51 (64)
10 d2g3qa1 a.5.2.1 (A:1339-1381) 45.5 9.3 0.00067 23.0 3.0 24 66-89 7-30 (43)
11 d1wgna_ a.5.2.1 (A:) Ubiquitin 44.9 5 0.00037 26.6 2.0 38 239-283 20-57 (63)
12 d1veka_ a.5.2.1 (A:) Ubiquitin 39.9 16 0.0012 25.4 4.2 41 240-286 31-71 (84)
13 d2pfxa1 a.152.1.3 (A:1-190) Un 36.8 42 0.0031 26.4 7.1 41 239-288 141-181 (190)
14 d1qpza1 a.35.1.5 (A:2-58) Puri 32.2 28 0.002 22.2 4.1 48 71-121 8-55 (57)
15 d1uxda_ a.35.1.5 (A:) Fructose 29.7 43 0.0031 21.3 4.8 43 178-220 8-51 (59)
16 d1cuka1 a.5.1.1 (A:156-203) DN 28.8 58 0.0042 19.8 5.5 36 236-272 3-38 (48)
17 d1rw1a_ c.47.1.12 (A:) Hypothe 27.8 33 0.0024 24.7 4.5 67 64-130 14-93 (114)
18 d1ttea1 a.5.2.1 (A:161-215) Ub 26.1 30 0.0022 21.9 3.2 22 241-262 12-33 (55)
19 d2hsga1 a.35.1.5 (A:2-58) Gluc 24.7 46 0.0034 21.0 4.1 46 71-119 9-54 (57)
20 d1r8da_ a.6.1.3 (A:) Multidrug 24.4 4.8 0.00035 29.3 -1.1 19 67-85 52-70 (109)
21 d1efaa1 a.35.1.5 (A:2-60) Lac 24.3 50 0.0037 21.0 4.3 47 71-120 10-56 (59)
22 d2af7a1 a.152.1.2 (A:1-119) Ga 24.3 78 0.0057 22.8 6.1 28 233-260 68-95 (119)
23 d1z96a1 a.5.2.1 (A:295-332) UB 23.3 54 0.0039 18.2 3.6 22 239-260 3-24 (38)
24 d2od5a1 a.4.5.70 (A:6-96) Hypo 23.1 41 0.003 23.6 3.9 30 97-126 24-56 (91)
25 d1go3f_ a.60.8.2 (F:) RNA poly 22.8 19 0.0014 26.2 2.0 24 65-88 54-77 (107)
26 d1q06a_ a.6.1.3 (A:) Transcrip 20.9 5.6 0.00041 29.9 -1.5 49 35-85 18-68 (127)
27 d1y14a_ a.60.8.2 (A:) RNA poly 20.6 29 0.0021 27.6 2.9 27 98-124 115-141 (176)
28 d2daha1 a.5.2.1 (A:8-48) Ubiqu 20.5 67 0.0049 18.9 3.9 16 205-220 3-18 (41)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.35 E-value=0.83 Score=27.92 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhC
Q 045903 237 TIREKVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 237 ~l~~kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
..++.|+-|.++||+++++.++++..
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46778888999999999998888765
No 2
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=67.97 E-value=3 Score=28.60 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHh
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGT 283 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~ 283 (385)
.+.++-|.++||+++++.++++.+- ..+...++||.+.
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHcC
Confidence 3467777788888888888887651 2466677887764
No 3
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=64.70 E-value=2.3 Score=29.20 Aligned_cols=38 Identities=11% Similarity=0.293 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHh
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGT 283 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~ 283 (385)
++.++-|.+|||++++..++++.+- ..+...++||.+.
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 4456666677777777666665431 1355566666653
No 4
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=61.59 E-value=2.3 Score=25.87 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhC
Q 045903 241 KVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 241 kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
-|+-|.+|||++++..+++.++
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHc
Confidence 4566778889988888888776
No 5
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.10 E-value=5.9 Score=26.16 Aligned_cols=40 Identities=8% Similarity=0.258 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK 285 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg 285 (385)
.+.++-|.++||+++...+++..+- ..+...++||.+.+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~~~ 49 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCCC
Confidence 4557778889999998888887652 247778889888543
No 6
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.63 E-value=4.5 Score=25.67 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=9.9
Q ss_pred HHHHHHcCCCHHHHHHHHH
Q 045903 242 VANLEKFGMSEDEIWSLFG 260 (385)
Q Consensus 242 v~~L~~~G~s~~ev~~mv~ 260 (385)
++-|.++||+.+...+++.
T Consensus 16 l~~L~~MGF~~~~a~~AL~ 34 (51)
T d2cpwa1 16 LDVLLSMGFPRARAQKALA 34 (51)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 3344555555555555554
No 7
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.48 E-value=7.2 Score=24.58 Aligned_cols=39 Identities=5% Similarity=0.135 Sum_probs=24.6
Q ss_pred HHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903 242 VANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM 286 (385)
Q Consensus 242 v~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~ 286 (385)
++-|.++||+.....+++... .-..+...++||.+.+.-
T Consensus 6 v~~L~~MGF~~~~a~~Al~~t------~n~~ve~A~~Wl~~h~~d 44 (51)
T d2crna1 6 LEPLLAMGFPVHTALKALAAT------GRKTAEEALAWLHDHCND 44 (51)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH------TSCCHHHHHHHHHHHSSS
T ss_pred HHHHHHcCCCHHHHHHHHHHH------CCCCHHHHHHHHHHcCCC
Confidence 455677888888777766521 112367778888876543
No 8
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.53 E-value=6.4 Score=23.66 Aligned_cols=25 Identities=4% Similarity=0.034 Sum_probs=18.9
Q ss_pred chHHHHHHHhCCCChHHHHHHHHhC
Q 045903 63 PKNSTEVLKKWGCSDSDITKLFARR 87 (385)
Q Consensus 63 ~~~~l~~L~~~G~s~~~i~~iv~~~ 87 (385)
-+..++-|.++||+.+++.+.++..
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 4 YETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3457788888888888888877664
No 9
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.57 E-value=6.7 Score=25.97 Aligned_cols=40 Identities=8% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903 241 KVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM 286 (385)
Q Consensus 241 kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~ 286 (385)
.++-|.++||+.+...+++... .-..+...++||.+.+.-
T Consensus 12 ~l~~L~~MGF~~~~a~~AL~~t------~n~~~e~A~~Wl~~h~~d 51 (64)
T d1whca_ 12 ALESLIEMGFPRGRAEKALALT------GNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH------TSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------CCCCHHHHHHHHHHCCCC
Confidence 4556778888888888877632 112477788888886653
No 10
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=45.51 E-value=9.3 Score=23.04 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHHHHhCCCChHHHHHHHHhCCC
Q 045903 66 STEVLKKWGCSDSDITKLFARRPT 89 (385)
Q Consensus 66 ~l~~L~~~G~s~~~i~~iv~~~P~ 89 (385)
.++-|.++||+.++..+.+.++.+
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~~w 30 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKCNW 30 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHcCC
Confidence 688899999999999999988654
No 11
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.93 E-value=5 Score=26.58 Aligned_cols=38 Identities=11% Similarity=0.314 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHh
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGT 283 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~ 283 (385)
++.|+-|.+|||+++++.++++.+ + ..+...++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~----~---~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK----G---ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH----C---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C---CCHHHHHHHHHhC
Confidence 567899999999999999888764 1 2477788888874
No 12
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=39.94 E-value=16 Score=25.41 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903 240 EKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM 286 (385)
Q Consensus 240 ~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~ 286 (385)
..+.-|.++||+.....+++... .-..+...++||.+.+.-
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t------~n~~~e~A~~Wl~~h~~d 71 (84)
T d1veka_ 31 EIVAQLVSMGFSQLHCQKAAINT------SNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT------TTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH------cCCCHHHHHHHHHHcCCC
Confidence 34556777888888777766421 112477788888876553
No 13
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=36.84 E-value=42 Score=26.40 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCCh
Q 045903 239 REKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPA 288 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~ 288 (385)
..-++-|++.||+++||..++.-. + +-.-++.+.+.+|+++
T Consensus 141 d~~~~~L~~~G~sd~eI~el~~~i----a-----~~~~~nr~~~~lgv~p 181 (190)
T d2pfxa1 141 EADREVLRSHGFNDRDIWDIANVT----G-----FFNMTNRVASATAMMP 181 (190)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH----H-----HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHH----H-----HHHHHHHHHHHcCCCC
Confidence 344678889999999998876411 1 2233445666677765
No 14
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.20 E-value=28 Score=22.17 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=32.7
Q ss_pred HhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHh
Q 045903 71 KKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINC 121 (385)
Q Consensus 71 ~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~ 121 (385)
+..|+|.+-+.+++...|.+ +.++-....+...++|..+..+++-+..
T Consensus 8 ~~agVS~sTVSr~ln~~~~v---s~~tr~rV~~~a~~lgY~pn~~Ar~Lr~ 55 (57)
T d1qpza1 8 KRANVSTTTVSHVINKTRFV---AEETRNAVWAAIKELHYSPSAVARSLKV 55 (57)
T ss_dssp HHHTSCHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCcCHHHHHHHHCCCCcc---CHHHHHHHHHHHHHHCCCCCHHHHHHhh
Confidence 34688888888888776653 4555566666667788877777665543
No 15
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.67 E-value=43 Score=21.30 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=30.1
Q ss_pred HHcCCChhhHHHHHhhCCcccccCCCChhHH-HHHHhhCCCcch
Q 045903 178 EQVGISRHDLIPMLMSRPTLIPRTSLNDQKM-EYISRTQVSRAS 220 (385)
Q Consensus 178 ~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv-~~L~~lG~~~~~ 220 (385)
+..|++...+.++|-..|.-...+....++| +...++|+.++.
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCS
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCH
Confidence 5689999999999887776332233456666 456888888764
No 16
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.85 E-value=58 Score=19.78 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHH
Q 045903 236 ETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDK 272 (385)
Q Consensus 236 ~~l~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~ 272 (385)
+...+-++.|..+|++..|..+++.+... =..+.|.
T Consensus 3 ~~~~eAi~AL~~LGY~~~ea~~av~~i~~-~~~s~E~ 38 (48)
T d1cuka1 3 DAEQEAVARLVALGYKPQEASRMVSKIAR-PDASSET 38 (48)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHSCC-SSCCHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCCCHHH
Confidence 45567788899999999999999987643 1345553
No 17
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.82 E-value=33 Score=24.68 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred hHHHHHHHhCC------------CChHHHHHHHHhCC-CccccCcccHHHHHHHHHhCCCChHhHHHHHHhCcccccccc
Q 045903 64 KNSTEVLKKWG------------CSDSDITKLFARRP-TLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRI 130 (385)
Q Consensus 64 ~~~l~~L~~~G------------~s~~~i~~iv~~~P-~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~ 130 (385)
..++++|+..| ++.+++..++...+ .-+...-+.....+..-....++.+++..++..+|.++.+.+
T Consensus 14 rka~~~L~~~~i~~~~idy~k~pls~~eL~~ll~~~g~~~l~~~r~~~~k~l~~~~~~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 14 KKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHHHHHCGGGBCSCE
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCHHHHHHHHHhcchHHHhhhhhHHHHHhhhhhhccccHHHHHHHHHhCcceEeCCE
No 18
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.10 E-value=30 Score=21.87 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=13.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhC
Q 045903 241 KVANLEKFGMSEDEIWSLFGRS 262 (385)
Q Consensus 241 kv~~L~~~G~s~~ev~~mv~~~ 262 (385)
.|+-+.++||+.+.+..++++.
T Consensus 12 ~V~~f~~mGF~rdKvI~VLrrl 33 (55)
T d1ttea1 12 LIDEFESQGFEKDKIVEVLRRL 33 (55)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHcCCCchhHHHHHHHh
Confidence 3455666777776666666553
No 19
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=24.66 E-value=46 Score=21.03 Aligned_cols=46 Identities=11% Similarity=0.278 Sum_probs=30.7
Q ss_pred HhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHH
Q 045903 71 KKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKII 119 (385)
Q Consensus 71 ~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il 119 (385)
+..|+|.+-+.+++...|.+ +.++-+...+..+++|..+...++-+
T Consensus 9 ~~agvS~~TVSr~Ln~~~~V---s~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPNV---KPSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTTS---CHHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHCcCHHHHHHHhCCCCcC---CHHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 35788888888888777653 55555566666677777766655544
No 20
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=24.41 E-value=4.8 Score=29.34 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=12.3
Q ss_pred HHHHHhCCCChHHHHHHHH
Q 045903 67 TEVLKKWGCSDSDITKLFA 85 (385)
Q Consensus 67 l~~L~~~G~s~~~i~~iv~ 85 (385)
+..|++.||+-++|..++.
T Consensus 52 I~~lr~~G~sl~eI~~~l~ 70 (109)
T d1r8da_ 52 ILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHh
Confidence 5566666777666666654
No 21
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.28 E-value=50 Score=21.02 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=32.5
Q ss_pred HhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHH
Q 045903 71 KKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIIN 120 (385)
Q Consensus 71 ~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~ 120 (385)
+..|+|.+-+.+++...+.+ +.++-....+...++|..+..+++.+.
T Consensus 10 ~~agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred HHHCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 45788888888888776654 455566666666778887777666553
No 22
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone decarboxylase, CMD {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.28 E-value=78 Score=22.82 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 045903 233 SRIETIREKVANLEKFGMSEDEIWSLFG 260 (385)
Q Consensus 233 s~~~~l~~kv~~L~~~G~s~~ev~~mv~ 260 (385)
.....++-.+..-...|++.+|+..++.
T Consensus 68 g~~~~l~~H~~~Al~~G~t~eEi~e~~~ 95 (119)
T d2af7a1 68 RADDQLKSHVRGALNAGCSKDEIIEVMI 95 (119)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3456788888888899999999988765
No 23
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=23.31 E-value=54 Score=18.16 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 045903 239 REKVANLEKFGMSEDEIWSLFG 260 (385)
Q Consensus 239 ~~kv~~L~~~G~s~~ev~~mv~ 260 (385)
..|+.-|.++||+.-+..+.+-
T Consensus 3 nskiaqlvsmgfdpleaaqald 24 (38)
T d1z96a1 3 NSKIAQLVSMGFDPLEAAQALD 24 (38)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHh
Confidence 4567777788888766665553
No 24
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=23.05 E-value=41 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=16.2
Q ss_pred cHHHHHHHHHh---CCCChHhHHHHHHhCcccc
Q 045903 97 NLRFKLSVLNE---LGLNSDDLVKIINCRPRFL 126 (385)
Q Consensus 97 ~l~~~l~~L~~---lG~~~~~I~~il~~~P~iL 126 (385)
+-...+++|.+ .|-+..+|+.|+.+.|++.
T Consensus 24 NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf~ 56 (91)
T d2od5a1 24 NTAEILEHINSTMRHGTTSQQLGNVLSKDKDIV 56 (91)
T ss_dssp EHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTEE
T ss_pred cHHHHHHHHHHhcccCCCHHHHHHHHhcCcchh
Confidence 33444455543 4666666666666666654
No 25
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.83 E-value=19 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=11.9
Q ss_pred HHHHHHHhCCCChHHHHHHHHhCC
Q 045903 65 NSTEVLKKWGCSDSDITKLFARRP 88 (385)
Q Consensus 65 ~~l~~L~~~G~s~~~i~~iv~~~P 88 (385)
.+++-|.++|+.+..+.+++.-.|
T Consensus 54 ~l~~~L~~~~~~~~~aakIanL~P 77 (107)
T d1go3f_ 54 KLVEELISLGIDEKTAVKIADILP 77 (107)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHhCC
Confidence 344444455555555555554444
No 26
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=20.87 E-value=5.6 Score=29.85 Aligned_cols=49 Identities=10% Similarity=0.157 Sum_probs=22.6
Q ss_pred cccccccchHHHHHhhchhccccCCCCCchH--HHHHHHhCCCChHHHHHHHH
Q 045903 35 ATYSTICQAEAVVEEITQDQANNYSDNHPKN--STEVLKKWGCSDSDITKLFA 85 (385)
Q Consensus 35 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~~G~s~~~i~~iv~ 85 (385)
+.|++.|+-..... ....-+.++.++... .+..|+++|++-++|..++.
T Consensus 18 R~Ye~~GLl~p~~r--~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI~~~l~ 68 (127)
T d1q06a_ 18 RFYEEKGLVTPPMR--SENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVN 68 (127)
T ss_dssp HHHHHTTCSCCCEE--CTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCCCCcc--CCcCcccchHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56666665331100 111123344444333 24556666666666665543
No 27
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.64 E-value=29 Score=27.60 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCChHhHHHHHHhCcc
Q 045903 98 LRFKLSVLNELGLNSDDLVKIINCRPR 124 (385)
Q Consensus 98 l~~~l~~L~~lG~~~~~I~~il~~~P~ 124 (385)
+..+-+.|...|+...+++.+..-||.
T Consensus 115 ~~~vrelL~~~~L~~fE~a~L~NLcPe 141 (176)
T d1y14a_ 115 VGAVIQLLKSTGLHPFEVAQLGSLACD 141 (176)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhcCCCHHHHHHhhccCCC
Confidence 334444444555555555555555553
No 28
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.54 E-value=67 Score=18.87 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=10.6
Q ss_pred hhHHHHHHhhCCCcch
Q 045903 205 DQKMEYISRTQVSRAS 220 (385)
Q Consensus 205 ~~kv~~L~~lG~~~~~ 220 (385)
...++.|++|||...+
T Consensus 3 ~~QL~~L~~MGF~d~~ 18 (41)
T d2daha1 3 QVQLEQLRSMGFLNRE 18 (41)
T ss_dssp HHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHcCCCCHH
Confidence 3456677778876655
Done!