Your job contains 1 sequence.
>045904
KGLLITWVQEDLRKREERAEVMDERRGRIINASSPYSDSEEESDSDESKIMAAKRYLNRD
RNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSREN
SRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFN
QRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELK
DQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045904
(296 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2039395 - symbol:AT2G16860 "AT2G16860" species... 698 8.0e-69 1
ZFIN|ZDB-GENE-040801-170 - symbol:syf2 "SYF2 homolog, RNA... 271 1.4e-23 1
MGI|MGI:1915842 - symbol:Syf2 "SYF2 homolog, RNA splicing... 267 3.8e-23 1
RGD|621592 - symbol:Syf2 "SYF2 homolog, RNA splicing fact... 267 3.8e-23 1
UNIPROTKB|F1N607 - symbol:SYF2 "Uncharacterized protein" ... 265 6.1e-23 1
UNIPROTKB|F1P0B5 - symbol:SYF2 "Uncharacterized protein" ... 264 7.8e-23 1
UNIPROTKB|I3LK70 - symbol:SYF2 "Uncharacterized protein" ... 264 7.8e-23 1
UNIPROTKB|O95926 - symbol:SYF2 "Pre-mRNA-splicing factor ... 253 1.1e-21 1
FB|FBgn0033556 - symbol:CG12343 species:7227 "Drosophila ... 226 8.3e-19 1
UNIPROTKB|Q28XK6 - symbol:Syf2 "Pre-mRNA-splicing factor ... 218 5.8e-18 1
WB|WBGene00019402 - symbol:K04G7.11 species:6239 "Caenorh... 177 1.3e-13 1
POMBASE|SPBC3E7.13c - symbol:syf2 "splicing factor, SYF2 ... 157 3.3e-10 1
DICTYBASE|DDB_G0284573 - symbol:syf2 "putative pre-mRNA-s... 161 5.0e-10 1
UNIPROTKB|Q521C0 - symbol:SYF2 "Pre-mRNA-splicing factor ... 117 7.5e-07 2
ASPGD|ASPL0000050771 - symbol:AN1861 species:162425 "Emer... 119 6.7e-05 1
>TAIR|locus:2039395 [details] [associations]
symbol:AT2G16860 "AT2G16860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 EMBL:AC005825 EMBL:AC005167 KO:K12868
HOGENOM:HOG000190170 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 OMA:PECINSS EMBL:AY099601 EMBL:AY128842
IPI:IPI00535385 PIR:B84545 RefSeq:NP_565396.1 UniGene:At.12859
PRIDE:Q9ZVX7 EnsemblPlants:AT2G16860.1 GeneID:816187
KEGG:ath:AT2G16860 TAIR:At2g16860 InParanoid:Q9ZVX7
PhylomeDB:Q9ZVX7 ProtClustDB:CLSN2688176 ArrayExpress:Q9ZVX7
Genevestigator:Q9ZVX7 Uniprot:Q9ZVX7
Length = 298
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 139/245 (56%), Positives = 174/245 (71%)
Query: 54 KRYLNRDRNKPAADEEKTAEG--GFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRK 111
KR + D ++ +EE E T+ TGRQ +LFEL+LK NEARK+NQT + ++ ++
Sbjct: 57 KR-IEEDSSEEEEEEEDNQEPQVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGSEKKKM 115
Query: 112 EAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXP 171
EAP ++ G+S Q+WLE RK+KIGKLL+ANGLD ++AYMLDTQ P
Sbjct: 116 EAPTETK----GISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKWEKEP 171
Query: 172 APFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDK 231
P GW+VFNQ+TLY AYK+R + I+VDLEEYNRM+ ADPEFYR ASSLQYG APK S+DK
Sbjct: 172 TPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQDK 231
Query: 232 IERMVKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLE 291
I++M KEL D+ +EKD+DSIN RNEHFN KIERA+GKYTL+IKNNLE
Sbjct: 232 IDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 291
Query: 292 RGTAL 296
RGTAL
Sbjct: 292 RGTAL 296
>ZFIN|ZDB-GENE-040801-170 [details] [associations]
symbol:syf2 "SYF2 homolog, RNA splicing factor (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] ZFIN:ZDB-GENE-040801-170
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 KO:K12868
eggNOG:NOG147890 GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170
OMA:AYNDDAD InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231
EMBL:BC076298 EMBL:BC091556 IPI:IPI00486427 RefSeq:NP_001003437.1
UniGene:Dr.75653 STRING:Q6DGP2 PRIDE:Q6DGP2
Ensembl:ENSDART00000099950 GeneID:445043 KEGG:dre:445043 CTD:25949
HOVERGEN:HBG080129 InParanoid:Q6DGP2 OrthoDB:EOG4X0MT8
NextBio:20831806 ArrayExpress:Q6DGP2 Bgee:Q6DGP2 Uniprot:Q6DGP2
Length = 238
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 75/237 (31%), Positives = 117/237 (49%)
Query: 64 PAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRG 123
P+ +EE T K R + EL K NEARK N + + +R + P++
Sbjct: 10 PSNEEEVTETPAAQKREERLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKAR 69
Query: 124 VSTQEWLEQRKRKIGKLLEANGLDTSRAYMLD--TQXXXXXXXXXXXXXPAPFGWEVFNQ 181
+ + ++Q+K++ + G D R +L+ + P P G+ + +
Sbjct: 70 LEYELLVDQKKKECAE----RGEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAE 124
Query: 182 RTLYGAYKRRAEKIEVDLEEYNRMKE-ADPEFYRGASSLQYGT-APKISEDKIERMVKEL 239
L Y+R ++I+ D+E Y + KE +F+ ++SL YGT P S+D I RMV ++
Sbjct: 125 AQLR-QYQRLTKQIKPDMENYEKQKEECGEDFHPTSNSLIYGTHVP--SKDSINRMVDDV 181
Query: 240 KDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+ Q +D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 182 EKQIEKRAKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238
>MGI|MGI:1915842 [details] [associations]
symbol:Syf2 "SYF2 homolog, RNA splicing factor (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007369 "gastrulation" evidence=IMP] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0048568 "embryonic organ
development" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] MGI:MGI:1915842 GO:GO:0005634
GO:GO:0008380 GO:GO:0001701 GO:GO:0006397 GO:GO:0071013
GO:GO:0007369 GO:GO:0048568 GO:GO:0031576 KO:K12868
eggNOG:NOG147890 GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170
OMA:AYNDDAD InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231
CTD:25949 HOVERGEN:HBG080129 OrthoDB:EOG4X0MT8 EMBL:AY155574
EMBL:AY033432 EMBL:AK003787 EMBL:AK152794 EMBL:BC051484
IPI:IPI00133410 RefSeq:NP_081056.1 UniGene:Mm.29989
ProteinModelPortal:Q9D198 STRING:Q9D198 PhosphoSite:Q9D198
PRIDE:Q9D198 Ensembl:ENSMUST00000030622 GeneID:68592 KEGG:mmu:68592
InParanoid:Q9D198 ChiTaRS:SYF2 NextBio:327522 Bgee:Q9D198
CleanEx:MM_SYF2 Genevestigator:Q9D198 GermOnline:ENSMUSG00000028821
Uniprot:Q9D198
Length = 242
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 80/237 (33%), Positives = 116/237 (48%)
Query: 63 KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
+P A EE A+ K R + EL LK NEARK N + + +R + PA+
Sbjct: 17 RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKA 72
Query: 123 GVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWEVFN 180
+ EW L++ ++K K A G D + +L+ P G+ +
Sbjct: 73 RL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYA 127
Query: 181 QRTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKEL 239
L Y R ++I+ D+E Y R +E E F+ ++SL +GT SE+ I+RMV +L
Sbjct: 128 AAQLR-QYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDL 185
Query: 240 KDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+ Q +D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 186 EKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>RGD|621592 [details] [associations]
symbol:Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007369
"gastrulation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0048568 "embryonic organ development"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] RGD:621592 GO:GO:0008380 GO:GO:0006397
GO:GO:0071013 KO:K12868 eggNOG:NOG147890
GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 CTD:25949
HOVERGEN:HBG080129 OrthoDB:EOG4X0MT8 EMBL:AF366369 EMBL:BC097289
IPI:IPI00208161 RefSeq:NP_596908.1 UniGene:Rn.162117
ProteinModelPortal:Q4QRB2 STRING:Q4QRB2 PRIDE:Q4QRB2
Ensembl:ENSRNOT00000024271 GeneID:170933 KEGG:rno:170933
UCSC:RGD:621592 InParanoid:Q4QRB2 NextBio:621455
Genevestigator:Q4QRB2 GermOnline:ENSRNOG00000017742 Uniprot:Q4QRB2
Length = 242
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 80/237 (33%), Positives = 116/237 (48%)
Query: 63 KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
+P A EE A+ K R + EL LK NEARK N + + +R + PA+
Sbjct: 17 RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKA 72
Query: 123 GVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWEVFN 180
+ EW L++ ++K K A G D + +L+ P G+ +
Sbjct: 73 RL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYA 127
Query: 181 QRTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKEL 239
L Y R ++I+ D+E Y R +E E F+ ++SL +GT SE+ I+RMV +L
Sbjct: 128 AAQLR-QYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDL 185
Query: 240 KDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+ Q +D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 186 EKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>UNIPROTKB|F1N607 [details] [associations]
symbol:SYF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
GO:GO:0071013 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 EMBL:DAAA02006397
IPI:IPI01002469 Ensembl:ENSBTAT00000002165 Uniprot:F1N607
Length = 235
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 79/241 (32%), Positives = 119/241 (49%)
Query: 60 DRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRE 119
++ PA EE ++ K R + EL LK NEARK N + + +R + PA+
Sbjct: 7 EQQPPAGAEELASQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEA 62
Query: 120 NSRGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWE 177
+ EW L++ ++K K A G D + +L+ P G+
Sbjct: 63 KKARL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFS 117
Query: 178 VFNQRTLYGAYKRRAEKIEVDLEEYNRMKEAD-PEFYRGASSLQYGT-APKISEDKIERM 235
+ L Y R ++I+ D+E Y R++E EF+ ++SL +GT P S ++I+RM
Sbjct: 118 DYAAAQLR-QYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVP--STEEIDRM 174
Query: 236 VKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTA 295
V +L+ Q +D+ D+D IN RN FN K ER YGKYT +IK NLERGTA
Sbjct: 175 VLDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 234
Query: 296 L 296
+
Sbjct: 235 V 235
>UNIPROTKB|F1P0B5 [details] [associations]
symbol:SYF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
GO:GO:0071013 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 EMBL:AADN02043972
IPI:IPI00811534 Ensembl:ENSGALT00000001893 Uniprot:F1P0B5
Length = 235
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 84/244 (34%), Positives = 118/244 (48%)
Query: 58 NRDRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKAN-QTAMDADIRRKEAPAS 116
+ D +P+A E A+ K R + EL LK NEARK N Q ++ D R K P
Sbjct: 5 SEDEAQPSAAEVAAAQ----KREERLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPPNW 60
Query: 117 SRENSRGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-F 174
+ +R EW L+ ++K K A G D R +L+ P
Sbjct: 61 EAKKAR----LEWELKVEEKK--KECAARGEDYERVKLLEISAEDAERWERKKKRKNPDL 114
Query: 175 GWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGT-APKISEDKI 232
G+ + L Y+R +I+ DLE+Y ++KE E Y + SL +GT P ++ I
Sbjct: 115 GFSDYAAAQLR-QYQRLTRQIKPDLEQYEKLKEQYGEALYPTSDSLLHGTHVP--DKEGI 171
Query: 233 ERMVKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLER 292
+RMV +L+ Q +D+ D+D IN RN FN K ER YGKYT +IK NLER
Sbjct: 172 DRMVADLEKQIEKREKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLER 231
Query: 293 GTAL 296
GTA+
Sbjct: 232 GTAV 235
>UNIPROTKB|I3LK70 [details] [associations]
symbol:SYF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
GO:GO:0071013 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231
Ensembl:ENSSSCT00000026402 Uniprot:I3LK70
Length = 249
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 79/241 (32%), Positives = 118/241 (48%)
Query: 60 DRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRE 119
++ P EE A+ K R + EL LK NEARK N + + +R + PA+
Sbjct: 21 EQQPPLGPEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEA 76
Query: 120 NSRGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWE 177
+ EW L++ ++K K A G D + +L+ P G+
Sbjct: 77 KKARL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFS 131
Query: 178 VFNQRTLYGAYKRRAEKIEVDLEEYNRMKEAD-PEFYRGASSLQYGT-APKISEDKIERM 235
+ L Y R ++I+ D+E Y R++E EF+ ++SL +GT P S ++I+RM
Sbjct: 132 DYAAAQLR-QYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVP--STEEIDRM 188
Query: 236 VKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTA 295
V +L+ Q +D+ D+D IN RN FN K ER YGKYT +IK NLERGTA
Sbjct: 189 VVDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 248
Query: 296 L 296
+
Sbjct: 249 V 249
>UNIPROTKB|O95926 [details] [associations]
symbol:SYF2 "Pre-mRNA-splicing factor SYF2" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] GO:GO:0000398 GO:GO:0071013
KO:K12868 eggNOG:NOG147890 HOGENOM:HOG000190170 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 CTD:25949
HOVERGEN:HBG080129 OrthoDB:EOG4X0MT8 EMBL:AF273089 EMBL:AL080166
EMBL:AL031432 EMBL:BC010862 IPI:IPI00022963 PIR:T12485
RefSeq:NP_056299.1 RefSeq:NP_997053.1 UniGene:Hs.20013
ProteinModelPortal:O95926 IntAct:O95926 STRING:O95926
PhosphoSite:O95926 PRIDE:O95926 DNASU:25949 Ensembl:ENST00000236273
Ensembl:ENST00000354361 GeneID:25949 KEGG:hsa:25949 UCSC:uc001bjt.1
GeneCards:GC01M025548 HGNC:HGNC:19824 HPA:HPA018265 MIM:607090
neXtProt:NX_O95926 PharmGKB:PA142670853 InParanoid:O95926
PhylomeDB:O95926 GenomeRNAi:25949 NextBio:47546 Bgee:O95926
CleanEx:HS_SYF2 Genevestigator:O95926 GermOnline:ENSG00000117614
Uniprot:O95926
Length = 243
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 79/239 (33%), Positives = 117/239 (48%)
Query: 65 AADEEKTAEGGFTKFTGRQARL--F-ELKLKFNEARKANQTAMDADIRRKEAPASSRENS 121
+A+E A R+ RL F EL L NEARK N + + +R + PA+
Sbjct: 13 SAEEGSLAAAAELAAQKREQRLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKK 72
Query: 122 RGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWEVF 179
+ EW L++ ++K K A G D + +L+ P G+ +
Sbjct: 73 ARL---EWELKEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDY 127
Query: 180 NQRTLYGAYKRRAEKIEVDLEEYNRMKEAD-PEFYRGASSLQYGT-APKISEDKIERMVK 237
L Y R ++I+ D+E Y R++E EF+ ++SL +GT P S ++I+RMV
Sbjct: 128 AAAQLR-QYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVP--STEEIDRMVI 184
Query: 238 ELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+L+ Q +D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 185 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
>FB|FBgn0033556 [details] [associations]
symbol:CG12343 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] EMBL:AE013599 GO:GO:0022008
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 KO:K12868
eggNOG:NOG147890 GeneTree:ENSGT00390000017845 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 EMBL:BT022631
RefSeq:NP_610617.1 UniGene:Dm.30963 STRING:Q9V5Q4 PaxDb:Q9V5Q4
PRIDE:Q9V5Q4 EnsemblMetazoa:FBtr0088247 GeneID:36143
KEGG:dme:Dmel_CG12343 UCSC:CG12343-RA FlyBase:FBgn0033556
InParanoid:Q9V5Q4 OrthoDB:EOG4VX0N3 PhylomeDB:Q9V5Q4
GenomeRNAi:36143 NextBio:797065 Bgee:Q9V5Q4 GermOnline:CG12343
Uniprot:Q9V5Q4
Length = 226
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 71/232 (30%), Positives = 103/232 (44%)
Query: 69 EKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQE 128
EKT K R+ARL +L K EAR N + A+ RK+ P + R E
Sbjct: 2 EKTKTAA-EKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQA---E 57
Query: 129 WLEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPA-P-FGWEVFNQRTLYG 186
W+ + + +A G D R +L+ P G+ + +T
Sbjct: 58 WILADDKARAEA-QAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTAR- 115
Query: 187 AYKRRAEKIEV-DLEEYNRMKEA-DPEFYRGASSLQYGTAPKISEDKIERMVKELKDQXX 244
Y R + + DLE+Y R KE FY GA + + K + I +MV +L+ Q
Sbjct: 116 QYNRLVKSMPARDLEKYERQKEELGDAFYGGAHTTLHSRT-KDTPGAINKMVTDLEQQIE 174
Query: 245 XXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+D+ DVD IN RN FN K++R Y ++T +IK NLERGTA+
Sbjct: 175 RRKKYSRRRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226
>UNIPROTKB|Q28XK6 [details] [associations]
symbol:Syf2 "Pre-mRNA-splicing factor Syf2" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0071004 "U2-type
prespliceosome" evidence=ISS] [GO:0071006 "U2-type catalytic step 1
spliceosome" evidence=ISS] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=ISS] [GO:0071008 "U2-type post-mRNA release
spliceosomal complex" evidence=ISS] EMBL:CM000071
GenomeReviews:CM000071_GR GO:GO:0000398 GO:GO:0071006 GO:GO:0071007
GO:GO:0071008 GO:GO:0071004 KO:K12868 eggNOG:NOG147890 OMA:AYNDDAD
InterPro:IPR013260 PANTHER:PTHR13264 Pfam:PF08231 OrthoDB:EOG4VX0N3
RefSeq:XP_001361731.1 GeneID:4805311 KEGG:dpo:Dpse_GA11568
FlyBase:FBgn0071619 InParanoid:Q28XK6 Uniprot:Q28XK6
Length = 226
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 68/223 (30%), Positives = 99/223 (44%)
Query: 78 KFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKI 137
K R+ARL +L K EAR N + A+ RK+ P + R EWL K
Sbjct: 10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQA---EWL-LADDKA 65
Query: 138 GKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPA-P-FGWEVFNQRTLYGAYKRRAEKI 195
+ +A G D R +L+ P G+ + +T Y R + +
Sbjct: 66 REDAQAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTAR-QYSRLVKGM 124
Query: 196 EV-DLEEYNRMK-EADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQXXXXXXXXXXX 253
D+E+Y + K E FY G + + K + I +MV +L Q
Sbjct: 125 PARDMEKYEKQKAELGEAFYGGPHTTLHALT-KDTPAAINKMVNDLDQQIERRKKYSRRR 183
Query: 254 XXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+D+ DVD IN RN FN K++R YG++T +IK NLERGTA+
Sbjct: 184 IYNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226
>WB|WBGene00019402 [details] [associations]
symbol:K04G7.11 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0016477 "cell migration" evidence=IMP]
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0010171
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
EMBL:FO080149 KO:K12868 PIR:A88500 PIR:H88499 RefSeq:NP_498566.3
STRING:Q09385 PaxDb:Q09385 EnsemblMetazoa:K04G7.11.1
EnsemblMetazoa:K04G7.11.2 GeneID:176003 KEGG:cel:CELE_K04G7.11
CTD:176003 WormBase:K04G7.11 eggNOG:NOG147890
GeneTree:ENSGT00390000017845 HOGENOM:HOG000190170 InParanoid:Q09385
OMA:AYNDDAD NextBio:890694 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 Uniprot:Q09385
Length = 234
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 56/211 (26%), Positives = 96/211 (45%)
Query: 90 KLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTS 149
KL+ ARK N + + RR + P + E + +W + ++ + K E GLD
Sbjct: 31 KLR-QRARKENHEQVVEEDRRSKLP-KNHEAKK--ERDQW-QVKELQDRKAAEDKGLDYE 85
Query: 150 RAYMLDTQXXXXXXXXXXXXXPA-PF-GWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKE 207
R L+ P G+ + TL + R ++ DL+ Y +M+E
Sbjct: 86 RVRSLEMSADVTEKLEQKRKRKKNPDQGFTSYEDMTLR-QHTRLTAALDPDLDSYKKMRE 144
Query: 208 A--DPEFYRGASSLQYGTAPKISEDKIERMVKELKDQXXXXXXXXXXXXXHDEKDVDSIN 265
+FY A +L +G + ++++ K++ Q + +D IN
Sbjct: 145 CVGGEQFYPTADTLIHGNHYPTTA-AMDKLTKDVHGQVKRREQYHRRRLYDPDAPIDYIN 203
Query: 266 HRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+N+ FN K+++ YGKYT DIK++LERGTA+
Sbjct: 204 EKNKKFNKKLDKYYGKYTEDIKDDLERGTAI 234
>POMBASE|SPBC3E7.13c [details] [associations]
symbol:syf2 "splicing factor, SYF2 family (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0007127 "meiosis I" evidence=IEP]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0045292 "mRNA
cis splicing, via spliceosome" evidence=ISS] PomBase:SPBC3E7.13c
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007127
GO:GO:0030437 GO:GO:0045292 KO:K12868 eggNOG:NOG147890
HOGENOM:HOG000190170 OMA:AYNDDAD InterPro:IPR013260
PANTHER:PTHR13264 Pfam:PF08231 OrthoDB:EOG4ZGSP5 PIR:T40387
RefSeq:NP_596100.1 IntAct:O59733 STRING:O59733
EnsemblFungi:SPBC3E7.13c.1 GeneID:2540611 KEGG:spo:SPBC3E7.13c
NextBio:20801736 Uniprot:O59733
Length = 229
Score = 157 (60.3 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 38/115 (33%), Positives = 58/115 (50%)
Query: 188 YKRRAEKIEVDLEEYNRMKEADPE------FYRGASSLQYGTAPKISEDKIERMVKELKD 241
Y R ++ D E+Y++ K+ + Y A L + + K ++ +ER+V+ +K
Sbjct: 116 YNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERLDW-VSNKPDKEHVERLVESIKK 174
Query: 242 QXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
Q +E + IN RN FN K++R Y KYT DIK +LERGTAL
Sbjct: 175 QDQRRLKNTKRRGTDEEDHITFINERNRKFNLKLQRFYSKYTKDIKEDLERGTAL 229
>DICTYBASE|DDB_G0284573 [details] [associations]
symbol:syf2 "putative pre-mRNA-splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0284573 GenomeReviews:CM000153_GR EMBL:AAFI02000066
KO:K12868 eggNOG:NOG147890 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 RefSeq:XP_638510.1 EnsemblProtists:DDB0233593
GeneID:8624660 KEGG:ddi:DDB_G0284573 InParanoid:Q54PG4 OMA:NINAMKQ
Uniprot:Q54PG4
Length = 293
Score = 161 (61.7 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 58/252 (23%), Positives = 107/252 (42%)
Query: 54 KRYLNRDRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEA 113
K+YL N ++K T Q +++EL+ K + ++ + +R
Sbjct: 53 KKYLKESEN-----DDKHFIDPLANLTPAQRKVYELRKKLETTKSVIYKSVVDEHKRIHQ 107
Query: 114 PASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLD--TQXXXXXXXXXXXXXP 171
A + +E ++Q + ++ K GLD + + + +
Sbjct: 108 GAQDEIEEKKRLYKEKIKQEEEEMKK----QGLDPQKERLKNQIAEEIKPNKKEKKKDSI 163
Query: 172 APFGWEVFNQRTLYGAYKRRAEKIEV--DLEEYNRMKEADPEFYRGAS----SLQYGTAP 225
++ +Y +YK+R +++E + E + ++ + G S +YG +
Sbjct: 164 VKDKSNTYSDEHVYNSYKKRVKEMEKFHNSEHFKKVVSNEDVKESGDSINNNKYEYGKSI 223
Query: 226 KISEDKIERMVKEL-KDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTL 284
+I D I M +EL K+Q +E+D++ IN N FN K+ RAY KYT+
Sbjct: 224 EIPRDNINAMKQELLKNQENRRSFKRKSFK--EEEDINYINEENRLFNQKVSRAYDKYTV 281
Query: 285 DIKNNLERGTAL 296
+ + NLERGTAL
Sbjct: 282 ETRQNLERGTAL 293
>UNIPROTKB|Q521C0 [details] [associations]
symbol:SYF2 "Pre-mRNA-splicing factor SYF2" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] GO:GO:0008380 EMBL:CM001233 GO:GO:0006397
GO:GO:0005681 KO:K12868 eggNOG:NOG147890 InterPro:IPR013260
PANTHER:PTHR13264 Pfam:PF08231 OrthoDB:EOG4ZGSP5
RefSeq:XP_003712719.1 STRING:Q521C0 EnsemblFungi:MGG_05180T0
GeneID:2675357 KEGG:mgr:MGG_05180 Uniprot:Q521C0
Length = 291
Score = 117 (46.2 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 212 FYRGASSLQYGTAPKISEDKIERMVKELK--DQXXXXXXXXXXXXXHDEKDVDSINHRNE 269
FY S + K ++ I+R+V ++K + ++ DV IN +N+
Sbjct: 206 FYSTTDSTDFAKN-KPDKEAIDRLVNDMKKAEDVAAKKRKARMAKNGEDDDVTYINDKNK 264
Query: 270 HFNSKIERAYGKYTLDIKNNLERGTAL 296
FN K+ R Y KYT +I+ + ERGT +
Sbjct: 265 QFNQKLARFYNKYTAEIRESFERGTMI 291
Score = 56 (24.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 39/159 (24%), Positives = 57/159 (35%)
Query: 58 NRDRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASS 117
N D+ P T E G T T R+ +F + +T+ D ++ K A A S
Sbjct: 24 NSDKASPETTTTSTTEPGNTAKTAAAERM----ARFRALQARAKTSSDQNL--KAATAES 77
Query: 118 RENSRGVSTQEWLEQR----KRKIGKL-LEANGLDTSRAYMLD-TQXXXXXXXXXXXXXP 171
R + S L +R KI K +E +G D R D T
Sbjct: 78 RREASDPSQLTALHRRHAIASHKILKADVEESGGDFERKRAWDWTAEESERWDKRVKKKE 137
Query: 172 APFGWEVFN--QRTLYGAYKRRAEKIEVDLEEYNRMKEA 208
A F + YKR+ + + D+E Y + K A
Sbjct: 138 AARDNNAFQDYRHEAEKIYKRQLKNMPPDMERYAKDKMA 176
>ASPGD|ASPL0000050771 [details] [associations]
symbol:AN1861 species:162425 "Emericella nidulans"
[GO:0030437 "ascospore formation" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] GO:GO:0008380 EMBL:BN001307 GO:GO:0006397
GO:GO:0005681 EMBL:AACD01000029 KO:K12868 eggNOG:NOG147890
HOGENOM:HOG000190170 InterPro:IPR013260 PANTHER:PTHR13264
Pfam:PF08231 RefSeq:XP_659465.1 STRING:Q5BC69
EnsemblFungi:CADANIAT00008515 GeneID:2875390 KEGG:ani:AN1861.2
OMA:PECINSS OrthoDB:EOG4ZGSP5 Uniprot:Q5BC69
Length = 297
Score = 119 (46.9 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 187 AYKRRAEKIEVDLEEYN--RMKEADPE--FYRGASSLQYGTAPKISEDKIERMVKELKDQ 242
A ++ A ++++ E N M D FY A ++ + T K ++++V +L+
Sbjct: 184 AIEKAAASGDLEIVETNDGEMIAVDKNGTFYSTADTIGF-TESKPDRAAVDKLVADLRKA 242
Query: 243 XXXXXXXXXXXXXHDEK-DVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
DE DV IN +N+ FN K+ R Y KYT +I+++ ERGT +
Sbjct: 243 EEVRLKKRRDRRGGDEDGDVTYINEKNKQFNQKLARFYNKYTTEIRDSFERGTMI 297
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 296 254 0.00084 114 3 11 23 0.37 34
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 584 (62 KB)
Total size of DFA: 177 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.50u 0.16s 20.66t Elapsed: 00:00:01
Total cpu time: 20.51u 0.16s 20.67t Elapsed: 00:00:01
Start: Fri May 10 10:15:37 2013 End: Fri May 10 10:15:38 2013