BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045904
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1
Length = 238
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 133/237 (56%), Gaps = 12/237 (5%)
Query: 64 PAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRG 123
P+ +EE T K R + EL K NEARK N + + +R + P++
Sbjct: 10 PSNEEEVTETPAAQKREERLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKAR 69
Query: 124 VSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDT--QEAAEAKYKKRAKEPAPFGWEVFNQ 181
+ + ++Q+K++ + G D R +L+ ++A + KK+ + P P G+ + +
Sbjct: 70 LEYELLVDQKKKECAE----RGEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAE 124
Query: 182 RTLYGAYKRRAEKIEVDLEEYNRMKE-ADPEFYRGASSLQYGT-APKISEDKIERMVKEL 239
L Y+R ++I+ D+E Y + KE +F+ ++SL YGT P S+D I RMV ++
Sbjct: 125 AQL-RQYQRLTKQIKPDMENYEKQKEECGEDFHPTSNSLIYGTHVP--SKDSINRMVDDV 181
Query: 240 KDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+ Q EKR +SRRR ++D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 182 EKQIEKRAKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238
>sp|Q28G05|SYF2_XENTR Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2
SV=1
Length = 249
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 133/235 (56%), Gaps = 12/235 (5%)
Query: 64 PAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRG 123
PA+ E+ A+ K R + EL LK NEARK N + + +R++ P+ N
Sbjct: 25 PASTEDLAAQ----KREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPS----NWEA 76
Query: 124 VSTQEWLEQRKRKIGKLLEANGLDTSRAYMLD-TQEAAEAKYKKRAKEPAPFGWEVFNQR 182
+ E ++ + + ANG+D RA +L+ + E AE +K+ ++ G+ +
Sbjct: 77 RKARLEWELKEEEKKRECAANGVDYERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAA 136
Query: 183 TLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKELKD 241
L Y+R ++I+ D+EEY K+ E FY + SL +GT S+ I+RMV +L+
Sbjct: 137 QL-RQYQRLTKQIKPDMEEYEMEKQKQGEMFYPTSESLYHGTHIP-SQSGIDRMVTDLEK 194
Query: 242 QEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
Q EKR+ +SRRR ++D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 195 QIEKREKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249
>sp|Q8AVQ6|SYF2_XENLA Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1
Length = 240
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 13/221 (5%)
Query: 82 RQARLF---ELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIG 138
R+ARL EL LK NEARK N + + +R++ P++ + + E++KR+
Sbjct: 27 REARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWELKNEEKKRECA 86
Query: 139 KLLEANGLDTSRAYMLD-TQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEV 197
ANG+D RA +L+ + E AE +K+ ++ G+ + L Y+R ++I+
Sbjct: 87 ----ANGVDFERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQL-RQYQRLTKQIKP 141
Query: 198 DLEEYNRMKEADPE-FYRGASSLQYGT-APKISEDKIERMVKELKDQEEKRKSFSRRRRF 255
D+EEY KE E FY + SL +GT P S+ I+RMV +L+ Q EKR+ +SRRR +
Sbjct: 142 DMEEYEMEKEKQGELFYPTSDSLYHGTHVP--SQSGIDRMVTDLEKQIEKREKYSRRRAY 199
Query: 256 HDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
+D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 200 NDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 240
>sp|Q4QRB2|SYF2_RAT Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2
SV=1
Length = 242
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 12/236 (5%)
Query: 63 KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
+P A EE A+ K R + EL LK NEARK N + + +R + PA N
Sbjct: 17 RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPA----NWE 68
Query: 123 GVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAP-FGWEVFNQ 181
+ E ++ + K A G D + +L+ ++++R K+ P G+ +
Sbjct: 69 AKKARLEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAA 128
Query: 182 RTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKELK 240
L Y R ++I+ D+E Y R +E E F+ ++SL +GT SE+ I+RMV +L+
Sbjct: 129 AQL-RQYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLE 186
Query: 241 DQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
Q EKR +SRRR ++D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 187 KQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>sp|Q9D198|SYF2_MOUSE Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1
Length = 242
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 12/236 (5%)
Query: 63 KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
+P A EE A+ K R + EL LK NEARK N + + +R + PA N
Sbjct: 17 RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPA----NWE 68
Query: 123 GVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAP-FGWEVFNQ 181
+ E ++ + K A G D + +L+ ++++R K+ P G+ +
Sbjct: 69 AKKARLEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAA 128
Query: 182 RTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKELK 240
L Y R ++I+ D+E Y R +E E F+ ++SL +GT SE+ I+RMV +L+
Sbjct: 129 AQL-RQYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLE 186
Query: 241 DQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
Q EKR +SRRR ++D+ D+D IN RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 187 KQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>sp|Q6DV01|SYF2_GECJA Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1
Length = 249
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 8/211 (3%)
Query: 88 ELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLD 147
EL LK NEARK N + + +R + PA N ++ E + + K A G D
Sbjct: 45 ELHLKRNEARKLNHQEVVEEDKRLKLPA----NWEAKKSRLEWELKVEEKKKECVAKGED 100
Query: 148 TSRAYMLD-TQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMK 206
R +L+ + E AE +KR K G+ + + Y+R +I+ DLE+Y +++
Sbjct: 101 YERVKLLEISAEDAERFERKRKKRNPDLGFSDYAAAQM-RQYQRLTRQIKPDLEKYAKLR 159
Query: 207 E-ADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSIN 265
E + EFY ++SL +GT E +++MV++L+ Q +KR+ +SRRR ++D+ D+D IN
Sbjct: 160 EESGEEFYPTSNSLLHGTHVPCKEG-VDKMVEDLEKQIQKREKYSRRRPYNDDADIDYIN 218
Query: 266 HRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 219 ERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249
>sp|O95926|SYF2_HUMAN Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1
Length = 243
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 8/211 (3%)
Query: 88 ELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLD 147
EL L NEARK N + + +R + PA N + E ++ + K A G D
Sbjct: 39 ELHLMRNEARKLNHQEVVEEDKRLKLPA----NWEAKKARLEWELKEEEKKKECAARGED 94
Query: 148 TSRAYMLDTQEAAEAKYKKRAKEPAP-FGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMK 206
+ +L+ +++++ K P G+ + L Y R ++I+ D+E Y R++
Sbjct: 95 YEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQL-RQYHRLTKQIKPDMETYERLR 153
Query: 207 EAD-PEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSIN 265
E EF+ ++SL +GT +E+ I+RMV +L+ Q EKR +SRRR ++D+ D+D IN
Sbjct: 154 EKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYIN 212
Query: 266 HRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
RN FN K ER YGKYT +IK NLERGTA+
Sbjct: 213 ERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
>sp|Q9V5Q4|SYF2_DROME Pre-mRNA-splicing factor Syf2 OS=Drosophila melanogaster GN=Syf2
PE=2 SV=1
Length = 226
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 26/231 (11%)
Query: 78 KFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKI 137
K R+ARL +L K EAR N + A+ RK+ P + W E RKR+
Sbjct: 10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLP------------KNW-EARKRQA 56
Query: 138 GKLL---------EANGLDTSRAYMLDTQ--EAAEAKYKKRAKEPAPFGWEVFNQRTLYG 186
+L +A G D R +L+ +A + KK+ K+ G+ + +T
Sbjct: 57 EWILADDKARAEAQAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTAR- 115
Query: 187 AYKRRAEKIEV-DLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEK 245
Y R + + DLE+Y R KE + + G + + K + I +MV +L+ Q E+
Sbjct: 116 QYNRLVKSMPARDLEKYERQKEELGDAFYGGAHTTLHSRTKDTPGAINKMVTDLEQQIER 175
Query: 246 RKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
RK +SRRR ++D+ DVD IN RN FN K++R Y ++T +IK NLERGTA+
Sbjct: 176 RKKYSRRRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226
>sp|Q28XK6|SYF2_DROPS Pre-mRNA-splicing factor Syf2 OS=Drosophila pseudoobscura
pseudoobscura GN=Syf2 PE=3 SV=1
Length = 226
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 78 KFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWL--EQRKR 135
K R+ARL +L K EAR N + A+ RK+ P + R EWL + + R
Sbjct: 10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQA---EWLLADDKAR 66
Query: 136 KIGKLLEANGLDTSRAYMLDTQ--EAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAE 193
+ +A G D R +L+ +A + KK+ K+ G+ + +T Y R +
Sbjct: 67 EDA---QAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTAR-QYSRLVK 122
Query: 194 KIEV-DLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRR 252
+ D+E+Y + K E + G K + I +MV +L Q E+RK +SRR
Sbjct: 123 GMPARDMEKYEKQKAELGEAFYGGPHTTLHALTKDTPAAINKMVNDLDQQIERRKKYSRR 182
Query: 253 RRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
R ++D+ DVD IN RN FN K++R YG++T +IK NLERGTA+
Sbjct: 183 RIYNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226
>sp|Q612R3|SYF2_CAEBR Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis briggsae GN=syf-2
PE=3 SV=2
Length = 233
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 16/208 (7%)
Query: 96 ARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYML- 154
ARK N + + RRK+ P +N ++ + ++ + K E GLD R L
Sbjct: 35 ARKENHAQVVEEDRRKKLP----KNFEAKKERDQWQVKELQDRKEAEDKGLDYERVRSLE 90
Query: 155 ---DTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEA--D 209
D E E K +KR K P G+ + TL + R ++ DLE Y +MKE
Sbjct: 91 MSADVTEKLEQK-RKRKKNPDQ-GFASYEDMTL-RQHTRLTAALDPDLESYKKMKECVGG 147
Query: 210 PEFYRGASSLQYGTA-PKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRN 268
+FY A +L +G P S ++R+VK++ Q ++R+ + RRR + + +D IN +N
Sbjct: 148 DQFYPTADTLIHGNHYPTTS--AMDRLVKDVHGQVKRREQYHRRRLYDPDAPIDYINEKN 205
Query: 269 EHFNSKIERAYGKYTLDIKNNLERGTAL 296
+ FN K+++ YGKYT DIK++LERGTA+
Sbjct: 206 KKFNKKLDKYYGKYTEDIKDDLERGTAI 233
>sp|O59733|SYF2_SCHPO Pre-mRNA-splicing factor syf2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=syf2 PE=1 SV=1
Length = 229
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 212 FYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHF 271
Y A L + + K ++ +ER+V+ +K Q+++R ++RR +E + IN RN F
Sbjct: 146 LYDEAERLDW-VSNKPDKEHVERLVESIKKQDQRRLKNTKRRGTDEEDHITFINERNRKF 204
Query: 272 NSKIERAYGKYTLDIKNNLERGTAL 296
N K++R Y KYT DIK +LERGTAL
Sbjct: 205 NLKLQRFYSKYTKDIKEDLERGTAL 229
>sp|Q09385|SYF2_CAEEL Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis elegans GN=syf-2
PE=3 SV=3
Length = 234
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 10/164 (6%)
Query: 139 KLLEANGLDTSRAYML----DTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEK 194
K E GLD R L D E E K +KR K P G+ + TL + R
Sbjct: 75 KAAEDKGLDYERVRSLEMSADVTEKLEQK-RKRKKNPDQ-GFTSYEDMTL-RQHTRLTAA 131
Query: 195 IEVDLEEYNRMKEA--DPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRR 252
++ DL+ Y +M+E +FY A +L +G + ++++ K++ Q ++R+ + RR
Sbjct: 132 LDPDLDSYKKMRECVGGEQFYPTADTLIHGNHYPTTA-AMDKLTKDVHGQVKRREQYHRR 190
Query: 253 RRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
R + + +D IN +N+ FN K+++ YGKYT DIK++LERGTA+
Sbjct: 191 RLYDPDAPIDYINEKNKKFNKKLDKYYGKYTEDIKDDLERGTAI 234
>sp|Q4WPM6|SYF2_ASPFU Pre-mRNA-splicing factor syf2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf2 PE=3
SV=2
Length = 300
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 212 FYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHF 271
FY A ++ + T K ++++V +L+ EE R R RR +E DV IN +N+ F
Sbjct: 217 FYSTADTIGF-TENKPDRAGVDKLVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQF 275
Query: 272 NSKIERAYGKYTLDIKNNLERGTAL 296
N K+ R Y KYT +I+++ ERGT +
Sbjct: 276 NQKLARFYNKYTTEIRDSFERGTMI 300
>sp|Q5BC69|SYF2_EMENI Pre-mRNA-splicing factor syf2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf2
PE=3 SV=1
Length = 297
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 212 FYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEK-DVDSINHRNEH 270
FY A ++ + T K ++++V +L+ EE R R RR DE DV IN +N+
Sbjct: 213 FYSTADTIGF-TESKPDRAAVDKLVADLRKAEEVRLKKRRDRRGGDEDGDVTYINEKNKQ 271
Query: 271 FNSKIERAYGKYTLDIKNNLERGTAL 296
FN K+ R Y KYT +I+++ ERGT +
Sbjct: 272 FNQKLARFYNKYTTEIRDSFERGTMI 297
>sp|Q7RZK5|SYF2_NEUCR Pre-mRNA-splicing factor syf-2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=syf-2 PE=3 SV=1
Length = 339
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 209 DPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRR----RFHDEKDVDSI 264
D F+ A S Q+ K + ++R+V +++ EE S +RR D+ DV I
Sbjct: 251 DGTFFSTADSTQFAQH-KPDKAAVDRLVADMRKAEEA--SLKKRRERMANNGDDADVTYI 307
Query: 265 NHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
N +N+ FN K+ R Y KYT +I+++ ERGT +
Sbjct: 308 NEKNKQFNQKLSRFYNKYTAEIRDSFERGTMV 339
>sp|Q521C0|SYF2_MAGO7 Pre-mRNA-splicing factor SYF2 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SYF2 PE=3 SV=2
Length = 291
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 212 FYRGASSLQYGTAPKISEDKIERMVKELKDQEE--KRKSFSRRRRFHDEKDVDSINHRNE 269
FY S + K ++ I+R+V ++K E+ +K +R + ++ DV IN +N+
Sbjct: 206 FYSTTDSTDFAK-NKPDKEAIDRLVNDMKKAEDVAAKKRKARMAKNGEDDDVTYINDKNK 264
Query: 270 HFNSKIERAYGKYTLDIKNNLERGTAL 296
FN K+ R Y KYT +I+ + ERGT +
Sbjct: 265 QFNQKLARFYNKYTAEIRESFERGTMI 291
>sp|Q6CFW4|SYF2_YARLI Pre-mRNA-splicing factor SYF2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SYF2 PE=3 SV=1
Length = 195
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 187 AYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKR 246
AY++ + DLE Y + KE S + P+ ++R+V L +++R
Sbjct: 94 AYEKDLASFKPDLETYEKEKETG---LHHTPSFNHKPTPEA----LDRLVNGLTKGDKQR 146
Query: 247 KSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
R++ D++ I+ +N+ FN K+ R Y KYT +I++N ERGTAL
Sbjct: 147 MK-RRKQAGADDQHATYISDKNKQFNEKLNRQYDKYTKEIRDNFERGTAL 195
>sp|Q6BVE0|SYF2_DEBHA Pre-mRNA-splicing factor SYF2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SYF2 PE=3 SV=2
Length = 231
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 152 YMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPE 211
+ ++ E E K K++ + G++ FN + AY + ++VD E Y++ K A +
Sbjct: 101 WTIEDCEKWEKKTKQKGRNQKS-GFQNFN-KMAEQAYNKELSNLKVDKETYDQQKNAINK 158
Query: 212 FYRGASSLQYGTAP---KISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDS-INHR 267
G S P K S R+V+ + +E + RRR DE DV+S IN +
Sbjct: 159 NKSGNQSQMSKILPVSSKPSAADTNRLVRNI--EEANNRRMKRRRNKDDENDVNSYINDK 216
Query: 268 NEHFNSKIERAY 279
N+ FN K+ R Y
Sbjct: 217 NKQFNLKLNRQY 228
>sp|Q8TCG1|CIP2A_HUMAN Protein CIP2A OS=Homo sapiens GN=KIAA1524 PE=1 SV=2
Length = 905
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 115 ASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYM--LDTQEAAEAKYKKRAKEPA 172
A E+ R S E L Q RK+ + E + + T ++YM L E+ E K K
Sbjct: 695 AQQVESERAQSDIEHLFQHNRKLESVAEEHEILT-KSYMELLQRNESTEKKNKDLQITCD 753
Query: 173 PFGWEVFNQRTLYGAYKRRAEK-IEVDLEEYNRMKEADPEFYRGASSL-QYGTAPKISED 230
++ + L + K + EK I +E+ + KE + L K+ E+
Sbjct: 754 SLNKQIETVKKLNESLKEQNEKSIAQLIEKEEQRKEVQNQLVDREHKLANLHQKTKVQEE 813
Query: 231 KIERMVKELKDQEEK----RKSFSRRRRFHDEKDVDS 263
KI+ + KE +D+EE RK SR + E + +
Sbjct: 814 KIKTLQKEREDKEETIDILRKELSRTEQIRKELSIKA 850
>sp|A7S8T5|CCD42_NEMVE Coiled-coil domain-containing protein 42 homolog OS=Nematostella
vectensis GN=v1g187067 PE=3 SV=1
Length = 312
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 185 YGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEE 244
Y Y++ EK+ + EE+ ++E +Y T +D +ER ELK+QE+
Sbjct: 140 YIIYQQYLEKVLENAEEFQEIREIIA---------RYDTLTATHQDLLER---ELKNQEK 187
Query: 245 KRKSFSRRRRFHDEKDVDSINHRNE--HFNSKIERA 278
K +R +F +EK+ + +N+ N+ + +K+E+
Sbjct: 188 YEKEKARLIKFTEEKNNEILNYNNQLANLQTKLEKT 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,710,630
Number of Sequences: 539616
Number of extensions: 4568416
Number of successful extensions: 19066
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 410
Number of HSP's that attempted gapping in prelim test: 18379
Number of HSP's gapped (non-prelim): 953
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)