Query 045904
Match_columns 296
No_of_seqs 135 out of 212
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2609 Cyclin D-interacting p 100.0 7.8E-56 1.7E-60 396.8 17.0 216 75-296 7-228 (228)
2 PF08231 SYF2: SYF2 splicing f 100.0 2.4E-48 5.1E-53 335.5 15.0 147 143-291 2-153 (153)
3 KOG4841 Dolichol-phosphate man 23.0 70 0.0015 25.9 2.3 28 32-59 63-90 (95)
4 PF08285 DPM3: Dolichol-phosph 20.7 82 0.0018 25.3 2.3 25 35-59 62-86 (91)
5 KOG3431 Apoptosis-related prot 15.3 1.1E+02 0.0023 26.4 1.8 40 224-263 86-129 (129)
6 COG1533 SplB DNA repair photol 10.9 98 0.0021 29.8 0.4 27 27-53 27-53 (297)
7 smart00523 DWA Domain A in dwa 10.0 1.2E+02 0.0026 25.2 0.6 15 25-39 80-103 (109)
8 PF11333 DUF3135: Protein of u 10.0 1.4E+02 0.0029 23.7 0.9 17 31-52 56-72 (83)
9 PF06651 DUF1163: Protein of u 7.6 1.5E+02 0.0032 23.0 0.1 16 16-31 54-69 (70)
10 PF09692 Arb1: Argonaute siRNA 6.9 7.2E+02 0.016 25.2 4.6 44 170-241 12-55 (396)
No 1
>KOG2609 consensus Cyclin D-interacting protein GCIP [Cell cycle control, cell division, chromosome partitioning; RNA processing and modification]
Probab=100.00 E-value=7.8e-56 Score=396.82 Aligned_cols=216 Identities=39% Similarity=0.590 Sum_probs=195.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhccccchHHHHHHHHHHHhHHHHhcCCChHHHHHH
Q 045904 75 GFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYML 154 (296)
Q Consensus 75 ~~~~m~~r~~RLkeLk~K~neark~N~keVv~E~kr~k~p~~ye~~~~~~~k~~~~~~~~~~~~~~~~~~G~D~eR~ytl 154 (296)
+...+..|++||++|+++|++|++.||.+|++|++++++|++|+ ++ .++..|.. .++.++.++.+.|.|+++.+++
T Consensus 7 ~~~~~~~r~kR~~~L~k~R~eARk~nheeVv~E~~r~klp~~~e--a~-~~r~~~E~-~e~~~~~~~~a~G~D~er~r~l 82 (228)
T KOG2609|consen 7 DAKKLELRRKRVRELHKKRNEARKENHEEVVEEDRRMKLPKNWE--AR-KERKEWEL-KEKEKKKEAEAQGLDYERRRLL 82 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchhhccCCchhH--HH-HHHHhhhh-hHHHHHHHHHhccccHHHHhcc
Confidence 45568999999999999999999999999999999999999998 43 33444544 4445788999999999998766
Q ss_pred H----HHHHHHHHHHHhccCCCCCchhhhhHhhHHHHHHHHHhccCCCHHHHHHhhh-cC-CcccCCCCccccCCCCCCC
Q 045904 155 D----TQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKE-AD-PEFYRGASSLQYGTAPKIS 228 (296)
Q Consensus 155 e----~aE~wekK~kKK~kk~~~~g~~~~~q~A~yr~YkK~ik~lk~d~e~YekqK~-~~-~~fy~~adsl~~g~~~kps 228 (296)
+ .++.|+++..++.+-+++.||++|...++ ++|.+++..++||++.|.++++ .| ..||+++.++.+| +++||
T Consensus 83 e~s~~~ser~~k~~~kk~k~n~~~~fs~Y~~qt~-~qynR~~~a~~~D~e~y~k~kE~~g~~~~~~~a~~~l~~-t~k~~ 160 (228)
T KOG2609|consen 83 EGSAEDSERWEKKYDKKRKLNQDLGFSDYAAQTL-RQYNRLTAADPPDLEKYEKVKERLGSEAFYPTATTLLHG-THKPD 160 (228)
T ss_pred cccHHHHHHHHHhhhcccccchhhhhhHHHHHHH-HHHhhhhhccchhhhhHHHHHHhhchhhhcccchhhccc-CCCCC
Confidence 5 58889998887777789999999999996 9999999999999999999876 44 6899999999998 58999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccccHHHHHHHHHHhchhhHHHHhhhhcccCC
Q 045904 229 EDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296 (296)
Q Consensus 229 ~eaVdrLV~dL~k~~~kR~kfsRRR~~~dd~DvdYINeRNk~FNkKL~R~y~kyT~EIk~NLERGTAl 296 (296)
.++||+||.+|.+|+++|.+|||||++++++|||||||||++||+||+|||+|||.|||+||||||||
T Consensus 161 ~~~idKl~~~L~~q~kkR~k~srRR~~n~d~~idfINerN~kFNkKl~R~ysKyT~eIK~nLERGTAl 228 (228)
T KOG2609|consen 161 TEAIDKLVKDLEKQIKKRYKYSRRRMYNEDADIDFINERNKKFNKKLERFYSKYTEEIKQNLERGTAL 228 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhHHHHhHHHHHHHHHHHHhhhhHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF08231 SYF2: SYF2 splicing factor; InterPro: IPR013260 Proteins in this entry are involved in cell cycle progression and pre-mRNA splicing [, ].
Probab=100.00 E-value=2.4e-48 Score=335.55 Aligned_cols=147 Identities=48% Similarity=0.780 Sum_probs=137.2
Q ss_pred hcCCChHHH----HHHHHHHHHHHHHHHhccCCCCCchhhhhHhhHHHHHHHHHhccCCCHHHHHHhhhcCC-cccCCCC
Q 045904 143 ANGLDTSRA----YMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADP-EFYRGAS 217 (296)
Q Consensus 143 ~~G~D~eR~----ytle~aE~wekK~kKK~kk~~~~g~~~~~q~A~yr~YkK~ik~lk~d~e~YekqK~~~~-~fy~~ad 217 (296)
+.|+|++|. ||++++|.|+++.++|++. .++||++|+++|+|++|+|+|++|+||++.|++++...+ .||++++
T Consensus 2 ~~g~D~er~k~l~~t~~e~E~w~~K~~kk~~~-~~~g~~~~~~~a~~~~Y~K~~~~l~~d~e~Y~~~k~~~~~~fy~~~~ 80 (153)
T PF08231_consen 2 EKGEDYERKKLLNYTAEEAEKWEKKKKKKKKN-KDFGFSDYNQDALYRQYKKRIKNLKPDMEEYEKQKEKLGEKFYRDAD 80 (153)
T ss_pred CccccHHHHHHHHhhHHHHHHHHHHHHhccCC-CCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhccccccCCCc
Confidence 579999985 7888999999988777554 689999999999889999999999999999999998544 4999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccccHHHHHHHHHHhchhhHHHHhhhh
Q 045904 218 SLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLE 291 (296)
Q Consensus 218 sl~~g~~~kps~eaVdrLV~dL~k~~~kR~kfsRRR~~~dd~DvdYINeRNk~FNkKL~R~y~kyT~EIk~NLE 291 (296)
+|.|| .++|++++||+||++|++++++|.+|||||.+++++||||||+||++||+||+||||+||+|||+|||
T Consensus 81 ~l~~~-~~~~~~e~vdrlv~~l~k~~~kR~k~sRrR~~~d~~dv~YINerNk~FN~KL~R~y~kyT~eIk~nlE 153 (153)
T PF08231_consen 81 SLVYG-SHKPSPEAVDRLVNDLEKQIEKRKKFSRRRKFDDDADVDYINERNKQFNKKLERFYDKYTAEIKQNLE 153 (153)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHhHhcccccCCCcCchhhhhHHHHHHHHHHHhHhHHHHHHhcC
Confidence 99999 58899999999999999999999999999999999999999999999999999999999999999998
No 3
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.04 E-value=70 Score=25.95 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=22.2
Q ss_pred cCCCCCccccchhhHHHHHHHHHhHhhh
Q 045904 32 ASSPYSDSEEESDSDESKIMAAKRYLNR 59 (296)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (296)
----||+|+|-.---.+.|.+|+..|.+
T Consensus 63 ~VATfnDc~eA~veL~~~IkEAr~~L~r 90 (95)
T KOG4841|consen 63 RVATFNDCEEAAVELQSQIKEARADLAR 90 (95)
T ss_pred eeeccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3346899988777788899999987754
No 4
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.72 E-value=82 Score=25.34 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.4
Q ss_pred CCCccccchhhHHHHHHHHHhHhhh
Q 045904 35 PYSDSEEESDSDESKIMAAKRYLNR 59 (296)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (296)
-|++|++....=...|.+||..|..
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999987743
No 5
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=15.27 E-value=1.1e+02 Score=26.40 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HH--HHhhhhhhc-cCCCCCCcc
Q 045904 224 APKISEDKIERMVKELKDQE-EK--RKSFSRRRR-FHDEKDVDS 263 (296)
Q Consensus 224 ~~kps~eaVdrLV~dL~k~~-~k--R~kfsRRR~-~~dd~DvdY 263 (296)
.+|.|++.+--|.+.+..+. .+ .-+|-|||. -++|.|-||
T Consensus 86 s~Kise~~lisiLe~is~Qt~qk~tkV~f~RRr~~~Ddddd~D~ 129 (129)
T KOG3431|consen 86 SHKISEAELISILEKISAQTNQKNTKVKFDRRRFNDDDDDDDDL 129 (129)
T ss_pred cccccHHHHHHHHHHHHHhhccccceeeeeccccccCccccccC
Confidence 47899988888888888877 22 236778884 444555555
No 6
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=10.94 E-value=98 Score=29.84 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=20.4
Q ss_pred CCccccCCCCCccccchhhHHHHHHHH
Q 045904 27 GRIINASSPYSDSEEESDSDESKIMAA 53 (296)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (296)
..|.++-|||..|.---.||+-+-+.+
T Consensus 27 ~~~~y~inpy~GC~h~C~YCYa~~~~~ 53 (297)
T COG1533 27 CPFDYTLNPYRGCSHGCIYCYARPMHG 53 (297)
T ss_pred CCCceecCCcCCCCCCCceeecccccc
Confidence 347899999999977778887654443
No 7
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=10.04 E-value=1.2e+02 Score=25.23 Aligned_cols=15 Identities=27% Similarity=0.177 Sum_probs=11.5
Q ss_pred hcCCccccC---------CCCCcc
Q 045904 25 RRGRIINAS---------SPYSDS 39 (296)
Q Consensus 25 ~~~~~~~~~---------~~~~~~ 39 (296)
.-|.|-+|. ||||-.
T Consensus 80 ~l~~C~~~~~~~~~~vC~NPyHy~ 103 (109)
T smart00523 80 ALPTCEHAFESKSDEVCCNPYHYS 103 (109)
T ss_pred ecccCCCcccCCCCeEEeCCceEE
Confidence 457888886 899964
No 8
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=9.99 E-value=1.4e+02 Score=23.70 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=11.9
Q ss_pred ccCCCCCccccchhhHHHHHHH
Q 045904 31 NASSPYSDSEEESDSDESKIMA 52 (296)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~ 52 (296)
.++||||-| ....+++.
T Consensus 56 ~~knP~~~~-----~~l~~~m~ 72 (83)
T PF11333_consen 56 RCKNPLHRC-----VLLSRMMY 72 (83)
T ss_pred HcCChHHHH-----HHHHHHHH
Confidence 478999999 44555544
No 9
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=7.60 E-value=1.5e+02 Score=22.99 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.2
Q ss_pred HHHHHHhhhhcCCccc
Q 045904 16 EERAEVMDERRGRIIN 31 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (296)
|.+|-+.+..||.|+|
T Consensus 54 e~kAT~Fg~~~P~c~~ 69 (70)
T PF06651_consen 54 EMKATMFGNGHPNCHN 69 (70)
T ss_pred cchhhhhcccCCceec
Confidence 3456677777888876
No 10
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=6.91 E-value=7.2e+02 Score=25.18 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=30.1
Q ss_pred CCCCCchhhhhHhhHHHHHHHHHhccCCCHHHHHHhhhcCCcccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 045904 170 EPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKD 241 (296)
Q Consensus 170 k~~~~g~~~~~q~A~yr~YkK~ik~lk~d~e~YekqK~~~~~fy~~adsl~~g~~~kps~eaVdrLV~dL~k 241 (296)
++.+.||..|-.++ +.+.++|...+. +| .|+.-.|+|+-.-|+.
T Consensus 12 k~r~tGFEe~y~Dp------------PmTp~E~~EEk~----iY------------~p~~Pf~~RiE~~IQR 55 (396)
T PF09692_consen 12 KKRPTGFEEYYADP------------PMTPAEAEEEKN----IY------------DPDRPFVERIEECIQR 55 (396)
T ss_pred CCCCCCcchhcCCC------------CCCHHHHHHHHh----hc------------CCCccHHHHHHHHHHH
Confidence 45689999987664 556788887764 33 2455567888777654
Done!