Query 045904
Match_columns 296
No_of_seqs 135 out of 212
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jyp_A Aragonite protein AP7; 25.0 20 0.00067 22.9 0.5 6 34-39 7-12 (36)
2 3twe_A Alpha4H; unknown functi 21.2 41 0.0014 20.1 1.4 19 76-94 7-25 (27)
3 4g3b_A Alpha4F3D; alpha helix, 9.2 58 0.002 19.3 -0.3 19 75-93 6-24 (26)
4 1imu_A Hypothetical protein HI 7.3 4.2E+02 0.014 20.0 3.8 24 226-249 68-91 (107)
5 2ap3_A Conserved hypothetical 6.3 1.8E+02 0.0062 25.4 1.3 20 264-287 167-186 (199)
6 3fxd_A Protein ICMQ; helix bun 6.0 2.3E+02 0.008 20.1 1.5 44 227-292 5-48 (57)
7 3q5w_A Protein CUT8; proteasom 5.7 2.2E+02 0.0076 25.7 1.6 27 30-57 108-134 (245)
8 2xs1_A Programmed cell death 6 5.3 7.1E+02 0.024 25.1 5.3 26 268-293 603-628 (704)
9 3v2c_Y Ribosome-associated inh 5.1 4.4E+02 0.015 20.6 2.9 23 227-249 69-91 (119)
10 4fyl_A Ribosome hibernation pr 5.0 5.2E+02 0.018 19.0 3.1 22 226-247 68-89 (95)
No 1
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=24.96 E-value=20 Score=22.85 Aligned_cols=6 Identities=17% Similarity=0.838 Sum_probs=5.3
Q ss_pred CCCCcc
Q 045904 34 SPYSDS 39 (296)
Q Consensus 34 ~~~~~~ 39 (296)
-|||+|
T Consensus 7 rpfhec 12 (36)
T 2jyp_A 7 RPFHEC 12 (36)
T ss_dssp TTTTCC
T ss_pred Cccchh
Confidence 599999
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.22 E-value=41 Score=20.14 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=14.3
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 045904 76 FTKFTGRQARLFELKLKFN 94 (296)
Q Consensus 76 ~~~m~~r~~RLkeLk~K~n 94 (296)
+..+++.++||+.|+.|+.
T Consensus 7 ykeledlqerlrklrkklr 25 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3457788889999988764
No 3
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=9.25 E-value=58 Score=19.34 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 045904 75 GFTKFTGRQARLFELKLKF 93 (296)
Q Consensus 75 ~~~~m~~r~~RLkeLk~K~ 93 (296)
.+..+++.++||+..+.|+
T Consensus 6 ~ykeled~qerlrk~rkkl 24 (26)
T 4g3b_A 6 XYKELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455778888888877765
No 4
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=7.29 E-value=4.2e+02 Score=20.00 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q 045904 226 KISEDKIERMVKELKDQEEKRKSF 249 (296)
Q Consensus 226 kps~eaVdrLV~dL~k~~~kR~kf 249 (296)
.+=-.+||.++..|..|..+.+..
T Consensus 68 ~d~y~AiD~a~dkLerqLrk~k~K 91 (107)
T 1imu_A 68 DDMYKAINEVEEKLERQLNKLQHK 91 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999877643
No 5
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=6.28 E-value=1.8e+02 Score=25.42 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=12.1
Q ss_pred cccccHHHHHHHHHHhchhhHHHH
Q 045904 264 INHRNEHFNSKIERAYGKYTLDIK 287 (296)
Q Consensus 264 INeRNk~FNkKL~R~y~kyT~EIk 287 (296)
||.-++.|| ..|++||.+..
T Consensus 167 vN~~y~~~~----~~FN~yTk~yN 186 (199)
T 2ap3_A 167 IEQNYKKLK----EVSDKYTKVLN 186 (199)
T ss_dssp HHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHH
Confidence 455555566 56667777653
No 6
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=5.97 E-value=2.3e+02 Score=20.09 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccccHHHHHHHHHHhchhhHHHHhhhhc
Q 045904 227 ISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLER 292 (296)
Q Consensus 227 ps~eaVdrLV~dL~k~~~kR~kfsRRR~~~dd~DvdYINeRNk~FNkKL~R~y~kyT~EIk~NLER 292 (296)
.|++-.+.+.+-|...++. .+-..-+| =|.-||--.|||+||-+
T Consensus 5 lt~eq~~aILkaLdeaIe~----------GPWe~SNF------------LRvIGKnL~eIRd~F~~ 48 (57)
T 3fxd_A 5 LSDEQKETILKALNDAIEK----------GPWDKSNF------------LRVIGKKLIAIRDRFLK 48 (57)
T ss_dssp CCHHHHHHHHHHHHHHHHH----------SCTTSCHH------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHc----------CCchHHHH------------HHHHHHhHHHHHHHHHH
Confidence 4666667777777776642 11111112 37778888999999864
No 7
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=5.69 E-value=2.2e+02 Score=25.74 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=20.3
Q ss_pred cccCCCCCccccchhhHHHHHHHHHhHh
Q 045904 30 INASSPYSDSEEESDSDESKIMAAKRYL 57 (296)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (296)
|+++=||. |...+||++.|+...=..+
T Consensus 108 i~~a~PY~-~~~~dDYaY~RVK~~L~eF 134 (245)
T 3q5w_A 108 LNDSFPYG-GDKRGDYAFNRIREKYMAV 134 (245)
T ss_dssp HHHTSCSS-SCTTSHHHHHHHHHHHHHH
T ss_pred HHHhCCCC-CCCccchhHHHHHHHHHHH
Confidence 45677888 6667999999987765444
No 8
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=5.33 E-value=7.1e+02 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHhchhhHHHHhhhhcc
Q 045904 268 NEHFNSKIERAYGKYTLDIKNNLERG 293 (296)
Q Consensus 268 Nk~FNkKL~R~y~kyT~EIk~NLERG 293 (296)
.-.|.+.|.+-|+.++..|.+|+.+-
T Consensus 603 e~lf~~eL~k~~~~~~~~i~~~~~~Q 628 (704)
T 2xs1_A 603 EALSVTELDRVYGGLTTKVQESLKKQ 628 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999998753
No 9
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=5.13 E-value=4.4e+02 Score=20.55 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Q 045904 227 ISEDKIERMVKELKDQEEKRKSF 249 (296)
Q Consensus 227 ps~eaVdrLV~dL~k~~~kR~kf 249 (296)
+=..|||.++..|..|..+.+..
T Consensus 69 D~yaAID~a~dkLerQLrK~K~K 91 (119)
T 3v2c_Y 69 DMYTAINELINKLERQLNKLQHK 91 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999877643
No 10
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=5.01 E-value=5.2e+02 Score=19.03 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 045904 226 KISEDKIERMVKELKDQEEKRK 247 (296)
Q Consensus 226 kps~eaVdrLV~dL~k~~~kR~ 247 (296)
.+=-.+||.++..|+.|..+.+
T Consensus 68 ~d~y~AiD~a~dklerQlrk~K 89 (95)
T 4fyl_A 68 ENMYAAIDSLVDKLVRQLNKHK 89 (95)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3447899999999999997764
Done!