Query 045904
Match_columns 296
No_of_seqs 135 out of 212
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 11:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045904.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045904hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olza3 g.16.2.1 (A:481-536) S 8.6 28 0.0021 22.6 -0.5 10 27-36 9-18 (56)
2 d1i1rb_ a.26.1.1 (B:) Interleu 4.8 4.9E+02 0.035 19.9 5.2 46 5-53 11-72 (167)
3 d1dkca_ g.3.4.2 (A:) Antifunga 4.7 38 0.0028 20.5 -1.4 19 27-48 8-26 (38)
4 d2ez9a1 c.31.1.3 (A:183-365) P 4.5 2.7E+02 0.02 20.8 3.4 18 225-242 13-30 (183)
5 d3bc8a1 c.67.1.9 (A:23-467) Se 3.7 4.1E+02 0.03 21.8 4.2 22 225-246 418-439 (445)
6 d1eiga_ d.9.1.1 (A:) Eotaxin-2 3.5 2.6E+02 0.019 18.2 2.1 12 5-16 53-64 (73)
7 d1l4sa_ d.204.1.1 (A:) Ribosom 3.4 4.3E+02 0.031 18.0 3.4 22 227-248 68-89 (112)
8 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 3.3 2.7E+02 0.02 18.0 2.0 15 184-198 20-34 (77)
9 d1r1ga_ g.3.7.2 (A:) Neurotoxi 3.2 95 0.0069 17.6 -0.5 12 21-32 14-25 (31)
10 d1v72a1 c.67.1.1 (A:6-350) Phe 3.2 2.8E+02 0.021 20.8 2.4 17 225-241 327-343 (345)
No 1
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.59 E-value=28 Score=22.58 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=8.5
Q ss_pred CCccccCCCC
Q 045904 27 GRIINASSPY 36 (296)
Q Consensus 27 ~~~~~~~~~~ 36 (296)
.+|++|-.||
T Consensus 9 ~~C~~a~DPy 18 (56)
T d1olza3 9 EDCVLARDPY 18 (56)
T ss_dssp HHHHHTTCTT
T ss_pred HHHHcCCCCc
Confidence 4689999999
No 2
>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's sarcoma herpes-virus [TaxId: 37296]}
Probab=4.80 E-value=4.9e+02 Score=19.90 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCccccCCCCC-------------cccc---chhhHHHHHHHH
Q 045904 5 ITWVQEDLRKREERAEVMDERRGRIINASSPYS-------------DSEE---ESDSDESKIMAA 53 (296)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---~~~~~~~~~~~~ 53 (296)
|+|| |.+-.+=-+.|-.--+.|-|+--|-. .|-. -.+.|+.+|..|
T Consensus 11 i~~~---l~~i~~~~kelC~~~~~C~~~~e~laennl~lPk~~~~DgCf~sgfN~E~CL~rI~~G 72 (167)
T d1i1rb_ 11 LNWM---LWVIDECFRDLCYRTGICKGILEPAAIFHLKLPAINDTDHCGLIGFNETSCLKKLADG 72 (167)
T ss_dssp HHHH---HHHHHHHHHHHHHHHCCBTTTBCCCSCCCSCCCCCCSTTCCSSSSCCHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHhcccccccchHHHHHhccCCCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 5666 33333333457777889988765433 2311 257899999998
No 3
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=4.68 E-value=38 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.057 Sum_probs=12.0
Q ss_pred CCccccCCCCCccccchhhHHH
Q 045904 27 GRIINASSPYSDSEEESDSDES 48 (296)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~ 48 (296)
++|.-+.-|=--| |.+|++
T Consensus 8 grcn~~~gppycc---s~~cl~ 26 (38)
T d1dkca_ 8 GRCNASAGPPYCC---SSYCFQ 26 (38)
T ss_dssp EEECTTSCCCCCS---SSEEEE
T ss_pred ceecccCCCCcee---chhhhc
Confidence 4665444444468 999985
No 4
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=4.50 E-value=2.7e+02 Score=20.83 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 045904 225 PKISEDKIERMVKELKDQ 242 (296)
Q Consensus 225 ~kps~eaVdrLV~dL~k~ 242 (296)
..|+++.|+++|+-|.+.
T Consensus 13 p~pd~~~i~~~~~~L~~A 30 (183)
T d2ez9a1 13 PEPDVQAVTRLTQTLLAA 30 (183)
T ss_dssp CBCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 568899999999998764
No 5
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.66 E-value=4.1e+02 Score=21.79 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 045904 225 PKISEDKIERMVKELKDQEEKR 246 (296)
Q Consensus 225 ~kps~eaVdrLV~dL~k~~~kR 246 (296)
...|++.||++|+.|++-.+.=
T Consensus 418 ~~~T~eDID~~v~~L~kilk~~ 439 (445)
T d3bc8a1 418 IGMKMQDVDLFIKRLDKCLNIV 439 (445)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999987653
No 6
>d1eiga_ d.9.1.1 (A:) Eotaxin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.47 E-value=2.6e+02 Score=18.17 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHH
Q 045904 5 ITWVQEDLRKRE 16 (296)
Q Consensus 5 ~~~~~~~~~~~~ 16 (296)
..|||+-|....
T Consensus 53 ~~WVk~~i~~L~ 64 (73)
T d1eiga_ 53 QEWVQRYMKNLD 64 (73)
T ss_dssp SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 479999998443
No 7
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=3.36 E-value=4.3e+02 Score=18.01 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 045904 227 ISEDKIERMVKELKDQEEKRKS 248 (296)
Q Consensus 227 ps~eaVdrLV~dL~k~~~kR~k 248 (296)
+=-.+||.++..|..|..+.+.
T Consensus 68 d~y~Aid~a~~klerQLrk~K~ 89 (112)
T d1l4sa_ 68 DMYTAINELINKLERQLNKLQH 89 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999977653
No 8
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.30 E-value=2.7e+02 Score=17.97 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccCCC
Q 045904 184 LYGAYKRRAEKIEVD 198 (296)
Q Consensus 184 ~yr~YkK~ik~lk~d 198 (296)
+.++|.+.+..+.||
T Consensus 20 Ik~ay~~l~~~~hPD 34 (77)
T d1hdja_ 20 IKRAYRRQALRYHPD 34 (77)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhccc
Confidence 468999999999998
No 9
>d1r1ga_ g.3.7.2 (A:) Neurotoxin bmk37 {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=3.25 E-value=95 Score=17.61 Aligned_cols=12 Identities=33% Similarity=0.482 Sum_probs=10.1
Q ss_pred HhhhhcCCcccc
Q 045904 21 VMDERRGRIINA 32 (296)
Q Consensus 21 ~~~~~~~~~~~~ 32 (296)
.|+-+.+.|||+
T Consensus 14 amgfssgkcins 25 (31)
T d1r1ga_ 14 AMGFSSGKCINS 25 (31)
T ss_dssp HTTCSEEEEETT
T ss_pred EEecccCcEecc
Confidence 578888999996
No 10
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}
Probab=3.19 E-value=2.8e+02 Score=20.81 Aligned_cols=17 Identities=0% Similarity=0.274 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHH
Q 045904 225 PKISEDKIERMVKELKD 241 (296)
Q Consensus 225 ~kps~eaVdrLV~dL~k 241 (296)
.-.|+|.||++++.|++
T Consensus 327 ~~~T~edid~~le~lr~ 343 (345)
T d1v72a1 327 FATTAEDVDHLLNQVRL 343 (345)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34589999999999875
Done!