BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045905
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ-QNFGQNDQERSYVATNASKL 59
+TL+ L++ L K V R M L H+GFF N ++E +Y T AS+L
Sbjct: 52 ITLSNLVSILQIPSTKVDNVQ----RLMRYLAHNGFFEIITNQELENEEEAYALTVASEL 107
Query: 60 LLKDITLTVRSFLQAVLDPILTTPCQHVTTWFQNDDLRCLTRHMG---WHF 107
L+K L + ++ VLDP L+T ++ W +DL ++G W F
Sbjct: 108 LVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEF 158
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 24 VYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPILTTP 83
V R M L H+GFF +E SY T AS+LL++ L + ++ VLDP L+
Sbjct: 71 VRRLMRYLAHNGFFEIIT----KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGS 126
Query: 84 CQHVTTWFQNDDLRCLTRHMGWHF 107
+ W +DL +G F
Sbjct: 127 YHELKKWIYEEDLTLFGVTLGSGF 150
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ----QNFGQNDQERSYVATNA 56
MTL+EL ++L HP K + +RF+ +L H+GFFA+ G ++E +Y T
Sbjct: 46 MTLSELASSLKLHPSKVNIL----HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP 101
Query: 57 SKLLLKDITLTVRSFLQAVLDPILTTPCQHVTTWFQNDD----LRCLTRHMGWHFESILG 112
SKLL+ + S ++ L P WF D C T W F +
Sbjct: 102 SKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDF--LNK 159
Query: 113 TSQRSTIS 120
S+ ST+S
Sbjct: 160 DSESSTLS 167
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ----QNFGQNDQERSYVATNA 56
MTL+EL ++L HP K + +RF+ +L H+GFFA+ G ++E +Y T
Sbjct: 45 MTLSELASSLKLHPSKVNIL----HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP 100
Query: 57 SKLLLKDITLTVRSFLQAVLDPILTTPCQHVTTWFQNDD----LRCLTRHMGWHFESILG 112
SKLL+ + S ++ L P WF D C T W F +
Sbjct: 101 SKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDF--LNK 158
Query: 113 TSQRSTIS 120
S+ ST+S
Sbjct: 159 DSESSTLS 166
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ----QNFGQNDQERSYVATNA 56
MTL+EL ++L HP K + +RF+ +L H+GFFA+ G ++E +Y T
Sbjct: 42 MTLSELASSLKLHPSKVNIL----HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP 97
Query: 57 SKLLLKDITLTVRSFLQAVLDPILTTPCQHVTTWFQNDD----LRCLTRHMGWHFESILG 112
SKLL+ + S ++ L P WF D C T W F +
Sbjct: 98 SKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDF--LNK 155
Query: 113 TSQRSTIS 120
S+ ST+S
Sbjct: 156 DSESSTLS 163
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 24 VYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPILTTP 83
V R L H+GFF +E SY T AS+LL++ L + ++ VLDP L+
Sbjct: 71 VRRLXRYLAHNGFFEIIT----KEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGS 126
Query: 84 CQHVTTWFQNDDLRCLTRHMGWHF 107
+ W +DL +G F
Sbjct: 127 YHELKKWIYEEDLTLFGVTLGSGF 150
>pdb|1BB6|A Chain A, Lysozyme Complex With 4-Methyl-Umbelliferyl Chitotriose
pdb|1BB7|A Chain A, Lysozyme Complex With 4-Methyl-Umbelliferyl Chitobiose
pdb|1LMC|A Chain A, The Crystal Structure Of A Complex Between Bulgecin, A
Bacterial Metabolite, And Lysozyme From The Rainbow
Trout
pdb|1LMN|A Chain A, The Refined Crystal Structure Of Lysozyme From The Rainbow
Trout (Oncorhynchus Mykiss)
pdb|1LMO|A Chain A, The Crystal Structures Of Three Complexes Between
Chitooligosaccharides And Lysozyme From The Rainbow
Trout
pdb|1LMP|A Chain A, The Crystal Structures Of Three Complexes Between
Chitooligosaccharides And Lysozyme From The Rainbow
Trout
pdb|1LMQ|A Chain A, The Crystal Structures Of Three Complexes Between
Chitooligosaccharides And Lysozyme From The Rainbow
Trout
Length = 129
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Query: 43 GQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPILTTPCQHVTTWF------QNDDL 96
G+ ++ S+LL D+T+ +R + VLDP + W QN DL
Sbjct: 67 GRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDP------NGIGAWVAWRLHCQNQDL 120
Query: 97 R 97
R
Sbjct: 121 R 121
>pdb|2VI6|A Chain A, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|B Chain B, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|C Chain C, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|D Chain D, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|E Chain E, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|F Chain F, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|G Chain G, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|H Chain H, Crystal Structure Of The Nanog Homeodomain
Length = 62
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 76 LDPILTTPCQHVTTWFQNDDLRC 98
L IL + V TWFQN ++C
Sbjct: 36 LSSILNLSYKQVKTWFQNQRMKC 58
>pdb|4AGI|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AHB|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 87 VTTWFQNDDLRCLTR----HMGWH 106
+ WFQ DDL+ + R H GW+
Sbjct: 176 IRIWFQTDDLKLVQRAYDPHKGWY 199
>pdb|4AHB|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose.
pdb|4AHB|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 87 VTTWFQNDDLRCLTR----HMGWH 106
+ WFQ DDL+ + R H GW+
Sbjct: 176 IRIWFQTDDLKLVQRAYDPHKGWY 199
>pdb|4AH4|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH4|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH5|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide.
pdb|4AH5|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide
Length = 315
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 87 VTTWFQNDDLRCLTR----HMGWH 106
+ WFQ DDL+ + R H GW+
Sbjct: 176 IRIWFQTDDLKLVQRAYDPHKGWY 199
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase Dna-Free Form
Length = 305
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 43 GQNDQERSYVATNASKLLLKDITLTVRSFLQA 74
G + R+++ATN+ +KD VR +L+A
Sbjct: 40 GSDSNARAFLATNSQAKHVKDCATMVRHYLRA 71
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric
Helicase With Ssdna And Mgadp
Length = 274
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 43 GQNDQERSYVATNASKLLLKDITLTVRSFLQA 74
G + R+++ATN+ +KD VR +L+A
Sbjct: 37 GSDSNARAFLATNSQAKHVKDCATMVRHYLRA 68
>pdb|4AGT|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AGT|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AHA|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHA|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHB|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 87 VTTWFQNDDLRCLTR----HMGWH 106
+ WFQ DDL+ + R H GW+
Sbjct: 176 IRIWFQTDDLKLVQRAYDPHKGWY 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,541,889
Number of Sequences: 62578
Number of extensions: 121043
Number of successful extensions: 245
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 15
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)