Query 045905
Match_columns 128
No_of_seqs 133 out of 857
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 99.8 5.5E-19 1.9E-23 138.8 7.7 114 1-119 57-175 (364)
2 1zg3_A Isoflavanone 4'-O-methy 99.7 2E-18 6.9E-23 134.6 7.3 115 1-119 46-165 (358)
3 3lst_A CALO1 methyltransferase 99.7 3.8E-18 1.3E-22 132.8 8.0 104 1-119 56-159 (348)
4 3reo_A (ISO)eugenol O-methyltr 99.7 2.8E-18 9.4E-23 134.9 7.2 114 1-119 60-177 (368)
5 1fp2_A Isoflavone O-methyltran 99.7 2.5E-18 8.5E-23 133.9 6.2 110 1-119 52-162 (352)
6 1fp1_D Isoliquiritigenin 2'-O- 99.7 9.1E-18 3.1E-22 131.6 6.0 115 1-119 63-183 (372)
7 3gwz_A MMCR; methyltransferase 99.7 2.2E-17 7.4E-22 129.6 7.4 105 1-119 72-177 (369)
8 2ip2_A Probable phenazine-spec 99.7 3.6E-17 1.2E-21 126.0 7.2 103 1-119 42-144 (334)
9 3i53_A O-methyltransferase; CO 99.7 2.2E-17 7.5E-22 127.3 5.0 105 1-119 39-144 (332)
10 1qzz_A RDMB, aclacinomycin-10- 99.6 5.8E-16 2E-20 120.7 5.7 105 1-119 50-157 (374)
11 3dp7_A SAM-dependent methyltra 99.6 1.5E-15 5E-20 118.9 7.0 101 1-119 51-153 (363)
12 1tw3_A COMT, carminomycin 4-O- 99.6 1.9E-15 6.4E-20 117.4 4.9 105 1-119 53-158 (360)
13 4a6d_A Hydroxyindole O-methylt 99.5 4.6E-14 1.6E-18 110.3 6.4 107 1-119 44-154 (353)
14 2r3s_A Uncharacterized protein 99.4 9.6E-14 3.3E-18 106.4 5.4 98 1-119 40-138 (335)
15 1x19_A CRTF-related protein; m 99.3 1.6E-12 5.4E-17 101.1 5.0 90 1-116 65-158 (359)
16 3mcz_A O-methyltransferase; ad 99.2 9.9E-12 3.4E-16 96.1 5.6 86 1-102 57-143 (352)
17 3bdd_A Regulatory protein MARR 96.7 0.0053 1.8E-07 40.3 6.7 57 1-64 46-103 (142)
18 2hzt_A Putative HTH-type trans 96.7 0.0025 8.7E-08 41.1 4.8 54 1-61 28-82 (107)
19 3b73_A PHIH1 repressor-like pr 96.6 0.0026 9E-08 42.0 4.3 51 1-64 28-80 (111)
20 1z7u_A Hypothetical protein EF 96.5 0.0037 1.3E-07 40.6 4.6 55 1-62 36-91 (112)
21 3bja_A Transcriptional regulat 96.5 0.0038 1.3E-07 40.9 4.7 56 1-63 48-103 (139)
22 2gxg_A 146AA long hypothetical 96.5 0.0062 2.1E-07 40.3 5.8 56 1-63 51-106 (146)
23 4a5n_A Uncharacterized HTH-typ 96.4 0.0054 1.8E-07 41.5 5.0 55 1-62 40-95 (131)
24 1ub9_A Hypothetical protein PH 96.3 0.0048 1.6E-07 38.5 4.3 54 1-61 31-84 (100)
25 2nnn_A Probable transcriptiona 96.3 0.0046 1.6E-07 40.6 4.3 56 1-63 53-108 (140)
26 3k0l_A Repressor protein; heli 96.3 0.0083 2.8E-07 40.8 5.6 56 1-63 61-116 (162)
27 2fsw_A PG_0823 protein; alpha- 96.3 0.0046 1.6E-07 39.8 4.0 54 2-62 40-94 (107)
28 3oop_A LIN2960 protein; protei 96.3 0.0043 1.5E-07 41.2 4.0 56 1-63 52-107 (143)
29 3bro_A Transcriptional regulat 96.3 0.0068 2.3E-07 39.8 4.9 56 1-63 51-106 (141)
30 2f2e_A PA1607; transcription f 96.2 0.0062 2.1E-07 41.6 4.8 53 1-61 38-90 (146)
31 1on2_A Transcriptional regulat 96.2 0.0056 1.9E-07 40.9 4.4 49 1-62 23-71 (142)
32 3df8_A Possible HXLR family tr 96.2 0.0061 2.1E-07 39.7 4.4 51 1-62 43-94 (111)
33 2eth_A Transcriptional regulat 96.2 0.0093 3.2E-07 40.1 5.4 56 1-63 59-114 (154)
34 3ech_A MEXR, multidrug resista 96.2 0.0045 1.5E-07 41.1 3.7 56 1-63 52-107 (142)
35 2fbh_A Transcriptional regulat 96.2 0.0077 2.6E-07 39.7 4.8 56 1-63 53-108 (146)
36 2heo_A Z-DNA binding protein 1 96.1 0.0029 9.9E-08 37.8 2.3 41 1-54 26-66 (67)
37 3eco_A MEPR; mutlidrug efflux 96.1 0.0051 1.7E-07 40.5 3.8 56 1-63 48-103 (139)
38 3jw4_A Transcriptional regulat 96.1 0.006 2.1E-07 40.7 4.1 56 1-63 58-113 (148)
39 3nrv_A Putative transcriptiona 96.1 0.005 1.7E-07 41.0 3.6 56 1-63 55-110 (148)
40 3g3z_A NMB1585, transcriptiona 96.1 0.0076 2.6E-07 40.0 4.5 56 1-63 46-101 (145)
41 3mq0_A Transcriptional repress 96.1 0.0034 1.2E-07 47.2 3.0 47 1-60 46-92 (275)
42 2rdp_A Putative transcriptiona 96.1 0.0078 2.7E-07 40.0 4.5 56 1-63 57-112 (150)
43 2hr3_A Probable transcriptiona 96.1 0.0087 3E-07 39.7 4.7 56 1-63 51-106 (147)
44 1yyv_A Putative transcriptiona 96.1 0.0063 2.2E-07 40.9 4.0 54 2-62 50-104 (131)
45 2qww_A Transcriptional regulat 96.0 0.0094 3.2E-07 39.9 4.9 56 1-63 56-113 (154)
46 2qvo_A Uncharacterized protein 96.0 0.0062 2.1E-07 38.3 3.7 52 2-63 32-83 (95)
47 1jgs_A Multiple antibiotic res 96.0 0.009 3.1E-07 39.2 4.6 56 1-63 49-104 (138)
48 3cdh_A Transcriptional regulat 96.0 0.0091 3.1E-07 40.1 4.7 56 1-63 58-113 (155)
49 2fa5_A Transcriptional regulat 96.0 0.007 2.4E-07 40.9 4.1 56 1-63 64-119 (162)
50 3bpv_A Transcriptional regulat 96.0 0.0062 2.1E-07 39.9 3.7 56 1-63 44-99 (138)
51 3tgn_A ADC operon repressor AD 96.0 0.0074 2.5E-07 40.0 4.1 56 1-63 52-107 (146)
52 2bv6_A MGRA, HTH-type transcri 96.0 0.0096 3.3E-07 39.3 4.6 56 1-63 52-107 (142)
53 3r4k_A Transcriptional regulat 95.9 0.0035 1.2E-07 46.7 2.4 48 1-60 22-69 (260)
54 1r7j_A Conserved hypothetical 95.9 0.0069 2.4E-07 38.6 3.5 49 1-63 21-69 (95)
55 1z91_A Organic hydroperoxide r 95.9 0.017 5.8E-07 38.2 5.6 57 1-64 55-111 (147)
56 3e6m_A MARR family transcripti 95.9 0.0096 3.3E-07 40.4 4.4 56 1-63 68-123 (161)
57 1y0u_A Arsenical resistance op 95.9 0.0072 2.5E-07 38.0 3.5 46 1-60 44-89 (96)
58 1lj9_A Transcriptional regulat 95.9 0.01 3.5E-07 39.2 4.4 56 1-63 44-99 (144)
59 3boq_A Transcriptional regulat 95.9 0.0083 2.9E-07 40.4 3.9 56 1-63 63-118 (160)
60 2frh_A SARA, staphylococcal ac 95.8 0.0073 2.5E-07 39.8 3.5 56 1-63 54-109 (127)
61 3bj6_A Transcriptional regulat 95.8 0.0093 3.2E-07 39.7 4.1 56 1-63 55-110 (152)
62 2y75_A HTH-type transcriptiona 95.8 0.0082 2.8E-07 39.8 3.7 45 1-56 27-71 (129)
63 2a61_A Transcriptional regulat 95.8 0.0055 1.9E-07 40.5 2.9 56 1-63 48-103 (145)
64 1s3j_A YUSO protein; structura 95.8 0.0087 3E-07 40.0 3.9 56 1-63 52-107 (155)
65 3hsr_A HTH-type transcriptiona 95.8 0.0067 2.3E-07 40.2 3.2 56 1-63 51-106 (140)
66 3nqo_A MARR-family transcripti 95.8 0.016 5.4E-07 40.7 5.3 56 1-63 58-113 (189)
67 3cjn_A Transcriptional regulat 95.8 0.0099 3.4E-07 40.2 4.0 56 1-63 67-122 (162)
68 3fm5_A Transcriptional regulat 95.8 0.0078 2.7E-07 40.2 3.4 56 1-63 55-110 (150)
69 2xrn_A HTH-type transcriptiona 95.7 0.0064 2.2E-07 44.7 3.1 49 1-61 22-70 (241)
70 3deu_A Transcriptional regulat 95.7 0.0072 2.5E-07 41.6 3.2 56 1-63 69-124 (166)
71 2pex_A Transcriptional regulat 95.6 0.026 9E-07 37.6 5.7 57 1-64 62-118 (153)
72 3s2w_A Transcriptional regulat 95.6 0.01 3.4E-07 40.2 3.6 56 1-63 65-120 (159)
73 2wte_A CSA3; antiviral protein 95.6 0.011 3.9E-07 43.8 4.1 50 1-62 167-216 (244)
74 1mkm_A ICLR transcriptional re 95.6 0.012 4.2E-07 43.2 4.2 47 1-60 24-70 (249)
75 2nyx_A Probable transcriptiona 95.6 0.012 3.9E-07 40.4 3.8 56 1-63 60-115 (168)
76 2fbi_A Probable transcriptiona 95.5 0.0096 3.3E-07 39.1 3.1 56 1-63 51-106 (142)
77 2x4h_A Hypothetical protein SS 95.5 0.016 5.5E-07 38.4 4.1 48 1-62 32-79 (139)
78 3u2r_A Regulatory protein MARR 95.5 0.0091 3.1E-07 40.8 3.0 56 1-63 63-118 (168)
79 2g7u_A Transcriptional regulat 95.5 0.021 7.1E-07 42.2 5.1 49 1-63 30-78 (257)
80 2o0y_A Transcriptional regulat 95.4 0.012 4.1E-07 43.7 3.7 47 1-60 39-85 (260)
81 3kp7_A Transcriptional regulat 95.4 0.019 6.5E-07 38.3 4.4 56 1-63 52-109 (151)
82 2obp_A Putative DNA-binding pr 95.3 0.023 7.7E-07 36.5 4.3 53 1-62 37-89 (96)
83 2pg4_A Uncharacterized protein 95.3 0.0068 2.3E-07 38.0 1.8 54 1-63 31-85 (95)
84 1xd7_A YWNA; structural genomi 95.2 0.014 4.7E-07 39.7 3.2 43 2-56 25-67 (145)
85 3t8r_A Staphylococcus aureus C 95.2 0.015 5E-07 39.6 3.3 45 1-56 29-73 (143)
86 4aik_A Transcriptional regulat 95.2 0.036 1.2E-06 37.5 5.3 55 2-63 48-102 (151)
87 1tbx_A ORF F-93, hypothetical 95.2 0.025 8.7E-07 35.4 4.2 53 1-63 23-79 (99)
88 4b8x_A SCO5413, possible MARR- 95.2 0.015 5.1E-07 39.2 3.3 56 1-63 52-107 (147)
89 3lwf_A LIN1550 protein, putati 95.2 0.016 5.3E-07 40.4 3.4 44 1-55 45-88 (159)
90 4hbl_A Transcriptional regulat 95.2 0.0097 3.3E-07 39.9 2.3 56 1-63 56-111 (149)
91 2oqg_A Possible transcriptiona 95.1 0.027 9.3E-07 35.9 4.3 50 1-60 35-84 (114)
92 4fx0_A Probable transcriptiona 95.1 0.018 6.3E-07 38.9 3.6 55 1-63 53-107 (148)
93 2fbk_A Transcriptional regulat 95.1 0.013 4.5E-07 40.6 2.8 56 1-63 87-142 (181)
94 1ylf_A RRF2 family protein; st 95.1 0.017 5.7E-07 39.5 3.3 44 1-56 31-74 (149)
95 3f3x_A Transcriptional regulat 94.9 0.016 5.4E-07 38.4 2.8 55 2-63 52-106 (144)
96 2fu4_A Ferric uptake regulatio 94.9 0.024 8.2E-07 34.5 3.3 34 1-41 34-72 (83)
97 3k69_A Putative transcription 94.9 0.023 7.8E-07 39.6 3.5 45 1-56 29-73 (162)
98 1sfx_A Conserved hypothetical 94.8 0.021 7.1E-07 35.7 3.0 53 1-61 35-87 (109)
99 2ia2_A Putative transcriptiona 94.8 0.015 5.1E-07 43.3 2.7 46 1-60 37-82 (265)
100 2h09_A Transcriptional regulat 94.8 0.035 1.2E-06 37.5 4.2 49 1-62 55-103 (155)
101 3u1d_A Uncharacterized protein 94.7 0.065 2.2E-06 37.1 5.5 74 1-92 46-125 (151)
102 2vn2_A DNAD, chromosome replic 94.7 0.053 1.8E-06 36.1 4.9 54 1-61 52-107 (128)
103 3hrs_A Metalloregulator SCAR; 94.5 0.04 1.4E-06 39.7 4.3 50 1-63 21-70 (214)
104 3pqk_A Biofilm growth-associat 94.5 0.046 1.6E-06 34.4 4.0 46 1-56 37-82 (102)
105 2fxa_A Protease production reg 94.3 0.039 1.3E-06 39.4 3.8 56 1-63 63-118 (207)
106 2v79_A DNA replication protein 94.2 0.064 2.2E-06 36.3 4.5 53 1-60 52-106 (135)
107 3cuo_A Uncharacterized HTH-typ 93.9 0.042 1.4E-06 33.9 3.0 47 1-57 39-85 (99)
108 3cta_A Riboflavin kinase; stru 93.7 0.063 2.1E-06 38.9 4.0 53 1-63 28-80 (230)
109 1xn7_A Hypothetical protein YH 93.5 0.067 2.3E-06 32.9 3.2 33 1-40 17-49 (78)
110 3jth_A Transcription activator 93.5 0.055 1.9E-06 33.7 3.0 47 1-57 37-83 (98)
111 2htj_A P fimbrial regulatory p 93.5 0.097 3.3E-06 31.7 4.0 33 1-40 15-47 (81)
112 2co5_A Viral protein F93; vira 93.3 0.15 5.2E-06 32.6 4.8 52 4-63 32-83 (99)
113 1bja_A Transcription regulator 93.0 0.14 4.9E-06 32.7 4.2 49 1-63 31-80 (95)
114 2k02_A Ferrous iron transport 92.9 0.07 2.4E-06 33.6 2.7 33 1-40 17-49 (87)
115 1fx7_A Iron-dependent represso 92.7 0.1 3.6E-06 37.7 3.9 48 3-63 27-74 (230)
116 1r1u_A CZRA, repressor protein 92.2 0.12 4.1E-06 32.8 3.2 47 1-57 40-86 (106)
117 2qm3_A Predicted methyltransfe 92.2 0.1 3.6E-06 40.3 3.5 46 1-61 56-101 (373)
118 2kko_A Possible transcriptiona 92.0 0.081 2.8E-06 33.9 2.2 46 2-57 40-85 (108)
119 3f6o_A Probable transcriptiona 92.0 0.11 3.6E-06 33.8 2.8 47 2-58 33-79 (118)
120 1ku9_A Hypothetical protein MJ 91.9 0.14 4.7E-06 33.5 3.4 48 1-57 42-89 (152)
121 1qgp_A Protein (double strande 91.8 0.12 4.1E-06 31.5 2.7 44 1-55 32-75 (77)
122 1p4x_A Staphylococcal accessor 91.8 0.18 6.2E-06 37.3 4.2 56 1-63 175-230 (250)
123 2qq9_A Diphtheria toxin repres 91.7 0.18 6.2E-06 36.4 4.1 48 3-63 27-74 (226)
124 3f6v_A Possible transcriptiona 91.6 0.16 5.5E-06 34.7 3.5 50 1-60 72-121 (151)
125 1u2w_A CADC repressor, cadmium 91.6 0.1 3.5E-06 34.1 2.4 47 1-57 57-103 (122)
126 3r0a_A Putative transcriptiona 91.5 0.1 3.6E-06 34.2 2.4 34 1-41 43-76 (123)
127 4esf_A PADR-like transcription 91.4 0.34 1.2E-05 31.6 4.8 44 16-63 43-88 (117)
128 1xmk_A Double-stranded RNA-spe 91.3 0.21 7.1E-06 30.8 3.4 49 2-60 27-75 (79)
129 2jsc_A Transcriptional regulat 90.8 0.14 4.7E-06 33.3 2.4 47 1-57 35-81 (118)
130 1oyi_A Double-stranded RNA-bin 90.8 0.23 7.9E-06 30.9 3.3 46 1-57 31-76 (82)
131 2d1h_A ST1889, 109AA long hypo 90.7 0.15 5.2E-06 31.6 2.4 34 1-41 37-70 (109)
132 3l7w_A Putative uncharacterize 90.6 0.21 7.1E-06 32.0 3.1 46 10-62 36-82 (108)
133 1hsj_A Fusion protein consisti 90.2 0.22 7.6E-06 39.3 3.6 55 1-62 421-475 (487)
134 2dk5_A DNA-directed RNA polyme 89.8 0.45 1.5E-05 29.9 4.1 34 1-41 37-70 (91)
135 2esh_A Conserved hypothetical 89.4 0.42 1.4E-05 31.0 3.9 58 2-63 28-92 (118)
136 1q1h_A TFE, transcription fact 89.4 0.42 1.4E-05 30.2 3.8 33 1-40 34-66 (110)
137 1qbj_A Protein (double-strande 89.4 0.49 1.7E-05 29.1 3.9 47 1-58 28-74 (81)
138 2k4b_A Transcriptional regulat 89.0 0.23 8E-06 31.7 2.4 37 1-41 50-87 (99)
139 1r1t_A Transcriptional repress 89.0 0.34 1.2E-05 31.7 3.2 47 1-57 60-106 (122)
140 2lkp_A Transcriptional regulat 88.8 0.31 1.1E-05 31.2 2.9 34 1-41 46-79 (119)
141 2fe3_A Peroxide operon regulat 88.3 0.66 2.3E-05 31.2 4.4 48 1-54 38-87 (145)
142 1xma_A Predicted transcription 88.0 0.31 1.1E-05 33.1 2.6 43 16-62 75-119 (145)
143 1yg2_A Gene activator APHA; vi 87.7 0.64 2.2E-05 32.2 4.2 55 2-61 17-79 (179)
144 1p4x_A Staphylococcal accessor 87.3 0.67 2.3E-05 34.2 4.2 56 1-63 51-106 (250)
145 1okr_A MECI, methicillin resis 86.6 0.3 1E-05 31.3 1.8 55 1-62 25-81 (123)
146 2o03_A Probable zinc uptake re 86.4 0.58 2E-05 30.9 3.2 44 1-53 27-75 (131)
147 3elk_A Putative transcriptiona 86.1 0.92 3.1E-05 29.5 4.0 41 23-63 49-91 (117)
148 2p8t_A Hypothetical protein PH 86.0 0.75 2.6E-05 33.2 3.8 46 2-61 32-77 (200)
149 1mzb_A Ferric uptake regulatio 86.0 0.88 3E-05 30.1 4.0 48 1-54 35-84 (136)
150 3f8b_A Transcriptional regulat 85.9 0.89 3E-05 29.4 3.8 43 16-62 46-90 (116)
151 2jt1_A PEFI protein; solution 85.8 0.63 2.1E-05 28.4 2.8 33 2-41 26-58 (77)
152 2w25_A Probable transcriptiona 85.0 0.62 2.1E-05 31.1 2.8 33 1-40 22-54 (150)
153 4esb_A Transcriptional regulat 84.0 0.67 2.3E-05 30.1 2.5 43 16-62 41-85 (115)
154 3hhh_A Transcriptional regulat 83.9 1.1 3.6E-05 29.2 3.5 56 4-63 30-90 (116)
155 2p5v_A Transcriptional regulat 83.8 0.71 2.4E-05 31.3 2.7 33 1-40 25-57 (162)
156 2pn6_A ST1022, 150AA long hypo 83.6 0.87 3E-05 30.3 3.0 32 1-39 18-49 (150)
157 2cfx_A HTH-type transcriptiona 83.5 0.96 3.3E-05 30.0 3.2 32 1-39 20-51 (144)
158 2xig_A Ferric uptake regulatio 83.2 1.2 4.1E-05 30.1 3.6 48 1-54 43-92 (150)
159 2dbb_A Putative HTH-type trans 83.1 1.2 4.2E-05 29.6 3.7 32 1-39 24-55 (151)
160 2cyy_A Putative HTH-type trans 82.9 0.72 2.5E-05 30.9 2.4 32 1-39 22-53 (151)
161 2zkz_A Transcriptional repress 82.5 0.63 2.1E-05 29.1 1.9 45 2-57 43-87 (99)
162 3ri2_A Transcriptional regulat 82.2 1.7 5.8E-05 28.6 4.0 43 16-62 51-94 (123)
163 2p4w_A Transcriptional regulat 81.9 1.1 3.7E-05 32.0 3.2 51 1-58 29-81 (202)
164 2oz6_A Virulence factor regula 81.6 1.1 3.8E-05 30.6 3.0 34 1-41 165-198 (207)
165 3b02_A Transcriptional regulat 81.4 1.6 5.4E-05 29.8 3.8 34 1-41 140-173 (195)
166 2e1c_A Putative HTH-type trans 81.2 0.97 3.3E-05 31.2 2.6 32 1-39 42-73 (171)
167 1v4r_A Transcriptional repress 81.2 0.9 3.1E-05 28.4 2.3 33 2-41 37-69 (102)
168 1p6r_A Penicillinase repressor 81.0 0.67 2.3E-05 27.7 1.5 37 1-41 24-61 (82)
169 1i1g_A Transcriptional regulat 80.9 1.2 4E-05 29.2 2.9 33 1-40 19-51 (141)
170 4g6q_A Putative uncharacterize 80.9 3.5 0.00012 28.6 5.5 53 2-61 38-93 (182)
171 2xzm_8 RPS25E,; ribosome, tran 80.7 1.2 4E-05 30.5 2.7 34 1-41 64-97 (143)
172 2cg4_A Regulatory protein ASNC 80.6 1.2 4.2E-05 29.7 2.9 32 1-39 23-54 (152)
173 2gau_A Transcriptional regulat 80.4 2 6.8E-05 29.9 4.1 34 1-41 181-214 (232)
174 2pjp_A Selenocysteine-specific 80.2 2.3 8E-05 27.5 4.1 42 2-56 22-63 (121)
175 3tqn_A Transcriptional regulat 80.1 1.9 6.6E-05 27.5 3.7 33 2-41 35-67 (113)
176 3mwm_A ZUR, putative metal upt 80.0 1.6 5.5E-05 29.1 3.3 47 2-54 31-79 (139)
177 3u5c_Z RP45, S31, YS23, 40S ri 79.8 1.9 6.5E-05 28.1 3.5 34 1-41 60-93 (108)
178 3dv8_A Transcriptional regulat 79.8 1.7 5.7E-05 29.9 3.5 34 1-41 170-203 (220)
179 2zcw_A TTHA1359, transcription 79.7 1.7 5.8E-05 29.7 3.5 34 1-41 147-180 (202)
180 2ia0_A Putative HTH-type trans 79.7 1.5 5.1E-05 30.2 3.2 32 1-39 32-63 (171)
181 4ev0_A Transcription regulator 79.6 1.6 5.6E-05 29.9 3.4 34 1-41 164-197 (216)
182 3ryp_A Catabolite gene activat 79.4 1.5 5E-05 30.0 3.1 34 1-41 168-201 (210)
183 3e97_A Transcriptional regulat 79.3 1.7 5.8E-05 30.2 3.5 34 1-41 176-209 (231)
184 3i4p_A Transcriptional regulat 79.0 1.3 4.4E-05 30.1 2.6 32 1-39 18-49 (162)
185 2b0l_A GTP-sensing transcripti 78.7 2.4 8.1E-05 26.8 3.7 33 2-41 45-77 (102)
186 3neu_A LIN1836 protein; struct 78.7 2.2 7.6E-05 27.8 3.7 33 2-41 39-71 (125)
187 1zyb_A Transcription regulator 78.7 2 6.8E-05 30.1 3.7 34 1-41 187-220 (232)
188 3l9f_A Putative uncharacterize 78.7 1.8 6.2E-05 31.0 3.5 39 23-61 73-113 (204)
189 3iwz_A CAP-like, catabolite ac 78.1 1.7 5.7E-05 30.1 3.1 34 1-41 188-221 (230)
190 2ek5_A Predicted transcription 77.8 3.3 0.00011 27.2 4.3 33 2-41 30-62 (129)
191 2w48_A Sorbitol operon regulat 77.8 2.3 7.8E-05 32.0 3.9 34 1-41 22-56 (315)
192 2fmy_A COOA, carbon monoxide o 77.7 1.4 5E-05 30.4 2.7 33 1-40 168-200 (220)
193 3dkw_A DNR protein; CRP-FNR, H 77.6 1.6 5.4E-05 30.2 2.8 34 1-41 179-212 (227)
194 1ft9_A Carbon monoxide oxidati 77.5 1.6 5.4E-05 30.4 2.8 34 1-41 164-197 (222)
195 3k2z_A LEXA repressor; winged 77.3 1.9 6.5E-05 30.1 3.2 33 1-40 25-57 (196)
196 3d0s_A Transcriptional regulat 76.8 2.2 7.6E-05 29.5 3.4 34 1-41 178-211 (227)
197 1uly_A Hypothetical protein PH 76.6 1.6 5.5E-05 30.8 2.6 33 1-40 34-66 (192)
198 3la7_A Global nitrogen regulat 76.0 1.8 6E-05 30.7 2.8 34 1-41 194-227 (243)
199 2w57_A Ferric uptake regulatio 75.9 1.6 5.4E-05 29.5 2.4 47 2-54 35-83 (150)
200 2dql_A PEX protein; circadian 75.8 2.7 9.4E-05 27.0 3.4 40 23-62 58-100 (115)
201 3by6_A Predicted transcription 75.6 3.1 0.00011 27.2 3.7 33 2-41 37-69 (126)
202 2bgc_A PRFA; bacterial infecti 75.1 3.3 0.00011 29.0 4.0 34 1-41 170-204 (238)
203 2o0m_A Transcriptional regulat 74.6 0.62 2.1E-05 35.7 0.0 47 1-61 35-81 (345)
204 4ham_A LMO2241 protein; struct 74.6 3.3 0.00011 27.1 3.7 33 2-41 40-72 (134)
205 3e6c_C CPRK, cyclic nucleotide 74.5 2.2 7.7E-05 30.2 3.0 34 1-41 178-211 (250)
206 2o3f_A Putative HTH-type trans 74.4 1.6 5.3E-05 28.1 1.9 28 1-35 40-67 (111)
207 3qph_A TRMB, A global transcri 74.0 0.4 1.4E-05 37.0 -1.2 48 2-60 34-81 (342)
208 2zfw_A PEX; five alpha-helices 73.6 2.7 9.3E-05 28.6 3.1 40 23-62 80-122 (148)
209 2qlz_A Transcription factor PF 73.4 1.1 3.8E-05 32.8 1.1 50 1-57 26-78 (232)
210 1tc3_C Protein (TC3 transposas 73.2 1.1 3.6E-05 23.3 0.8 23 1-30 22-44 (51)
211 3kcc_A Catabolite gene activat 72.7 2.4 8.1E-05 30.4 2.8 34 1-41 218-251 (260)
212 2g9w_A Conserved hypothetical 72.0 2.2 7.6E-05 28.0 2.3 37 1-41 25-62 (138)
213 3eyy_A Putative iron uptake re 71.6 3.2 0.00011 27.7 3.0 48 1-54 34-83 (145)
214 3fx3_A Cyclic nucleotide-bindi 70.5 2.8 9.4E-05 29.2 2.6 29 1-36 179-207 (237)
215 3iwf_A Transcription regulator 70.5 1.6 5.3E-05 28.1 1.2 28 1-35 36-63 (107)
216 2qc0_A Uncharacterized protein 70.1 5.7 0.00019 30.7 4.6 53 2-64 313-365 (373)
217 1uxc_A FRUR (1-57), fructose r 69.8 2.2 7.7E-05 24.8 1.7 22 1-29 1-22 (65)
218 3ic7_A Putative transcriptiona 69.5 2.3 7.7E-05 27.8 1.9 33 2-41 37-69 (126)
219 1j5y_A Transcriptional regulat 69.1 4.2 0.00014 28.1 3.3 42 1-56 37-79 (187)
220 1bia_A BIRA bifunctional prote 69.0 3.9 0.00013 30.9 3.4 43 1-55 20-62 (321)
221 3lsg_A Two-component response 68.2 4 0.00014 25.1 2.8 57 1-73 20-76 (103)
222 1z6r_A MLC protein; transcript 67.9 5.1 0.00017 30.9 3.9 34 1-41 31-64 (406)
223 3c7j_A Transcriptional regulat 67.6 5.1 0.00017 28.8 3.6 34 1-41 50-83 (237)
224 3eqx_A FIC domain containing t 66.4 7.2 0.00025 30.3 4.5 53 2-64 313-365 (373)
225 1o5l_A Transcriptional regulat 66.0 1.2 4.2E-05 30.8 0.0 33 1-40 165-197 (213)
226 2xvc_A ESCRT-III, SSO0910; cel 66.0 6.2 0.00021 22.8 3.0 30 3-39 28-57 (59)
227 2e1n_A PEX, period extender; c 65.9 3.8 0.00013 27.4 2.5 41 23-63 70-113 (138)
228 2k9s_A Arabinose operon regula 65.9 4.6 0.00016 25.0 2.7 57 1-73 21-77 (107)
229 3oou_A LIN2118 protein; protei 65.7 3.3 0.00011 25.8 2.0 57 1-73 22-78 (108)
230 3iz6_V 40S ribosomal protein S 65.6 1.7 5.9E-05 28.3 0.6 34 1-41 61-94 (108)
231 2hoe_A N-acetylglucosamine kin 65.4 4.3 0.00015 31.1 3.0 35 1-42 34-68 (380)
232 2p7v_B Sigma-70, RNA polymeras 65.3 3 0.0001 23.8 1.6 27 1-30 26-52 (68)
233 2jpc_A SSRB; DNA binding prote 64.6 5.5 0.00019 21.9 2.7 28 1-31 14-41 (61)
234 3hug_A RNA polymerase sigma fa 63.9 4.6 0.00016 24.5 2.4 29 1-32 54-82 (92)
235 3mn2_A Probable ARAC family tr 63.9 3.3 0.00011 25.7 1.7 59 1-74 19-78 (108)
236 1ku3_A Sigma factor SIGA; heli 63.6 5 0.00017 23.1 2.4 29 1-32 31-59 (73)
237 1z05_A Transcriptional regulat 62.9 5.7 0.0002 30.9 3.3 34 1-41 54-87 (429)
238 3oio_A Transcriptional regulat 61.8 3.7 0.00013 25.8 1.7 57 1-73 24-80 (113)
239 2p5k_A Arginine repressor; DNA 61.5 8.2 0.00028 21.3 3.1 27 1-37 20-51 (64)
240 1tty_A Sigma-A, RNA polymerase 61.4 5.6 0.00019 23.9 2.4 28 1-31 39-66 (87)
241 3pfi_A Holliday junction ATP-d 61.4 7.3 0.00025 28.8 3.5 45 2-60 281-326 (338)
242 1jko_C HIN recombinase, DNA-in 61.1 3.5 0.00012 21.5 1.3 22 1-29 22-43 (52)
243 1cf7_A Protein (transcription 61.1 10 0.00035 22.8 3.5 34 1-41 31-65 (76)
244 1sd4_A Penicillinase repressor 60.8 3.6 0.00012 26.1 1.5 37 1-41 25-62 (126)
245 4ets_A Ferric uptake regulatio 60.2 5.9 0.0002 27.0 2.6 48 1-54 49-100 (162)
246 2ijl_A AGR_C_4647P, molybdenum 59.8 35 0.0012 22.6 6.6 79 2-94 40-121 (135)
247 3mkl_A HTH-type transcriptiona 59.8 6 0.0002 25.1 2.5 57 1-74 24-80 (120)
248 1lva_A Selenocysteine-specific 59.8 12 0.00042 27.2 4.5 42 2-56 159-200 (258)
249 3rkx_A Biotin-[acetyl-COA-carb 59.8 5.8 0.0002 30.2 2.7 48 1-60 20-67 (323)
250 2lnb_A Z-DNA-binding protein 1 59.6 7.9 0.00027 23.7 2.8 40 2-54 36-75 (80)
251 3aaf_A Werner syndrome ATP-dep 59.5 8.3 0.00028 25.6 3.2 39 23-62 69-107 (134)
252 2x48_A CAG38821; archeal virus 59.5 3.6 0.00012 22.3 1.2 22 1-29 32-53 (55)
253 2o8x_A Probable RNA polymerase 59.1 6.7 0.00023 22.0 2.4 29 1-32 32-60 (70)
254 3l09_A Putative transcriptiona 58.1 12 0.0004 27.9 4.1 52 3-64 48-99 (266)
255 1bl0_A Protein (multiple antib 58.0 5.6 0.00019 25.6 2.1 58 1-74 28-85 (129)
256 1bm9_A RTP, TER, replication t 57.6 14 0.00048 24.4 4.0 45 10-59 48-96 (122)
257 1jhg_A Trp operon repressor; c 57.4 7.4 0.00025 24.8 2.5 26 1-33 59-84 (101)
258 1sfu_A 34L protein; protein/Z- 57.1 15 0.00051 22.2 3.8 33 1-40 30-62 (75)
259 1ldj_A Cullin homolog 1, CUL-1 56.3 9.1 0.00031 32.5 3.6 31 1-38 604-634 (760)
260 3edp_A LIN2111 protein; APC883 55.9 15 0.00052 26.3 4.4 33 2-41 35-67 (236)
261 3bwg_A Uncharacterized HTH-typ 55.9 15 0.00052 26.3 4.4 33 2-41 31-63 (239)
262 3sxy_A Transcriptional regulat 55.0 8.6 0.0003 26.9 2.9 33 2-41 37-69 (218)
263 3c57_A Two component transcrip 54.5 8.5 0.00029 23.6 2.4 29 1-32 43-71 (95)
264 3lmm_A Uncharacterized protein 54.3 9.2 0.00032 31.5 3.3 47 1-61 445-496 (583)
265 1hw1_A FADR, fatty acid metabo 54.0 12 0.00042 26.3 3.5 33 2-41 33-65 (239)
266 2gqq_A Leucine-responsive regu 53.8 2.1 7.3E-05 28.9 -0.6 31 1-38 28-58 (163)
267 2wv0_A YVOA, HTH-type transcri 52.6 14 0.00047 26.6 3.7 33 2-41 36-68 (243)
268 1fse_A GERE; helix-turn-helix 52.3 10 0.00034 21.4 2.4 28 1-31 27-54 (74)
269 2hs5_A Putative transcriptiona 51.1 12 0.0004 26.8 3.1 33 2-41 53-85 (239)
270 1y6u_A XIS, excisionase from t 50.9 8.4 0.00029 22.7 1.9 22 1-29 17-38 (70)
271 2qlz_A Transcription factor PF 50.3 8.2 0.00028 28.1 2.1 34 1-41 179-212 (232)
272 2z99_A Putative uncharacterize 50.2 8.9 0.0003 27.9 2.3 47 1-58 115-162 (219)
273 3kor_A Possible Trp repressor; 49.8 9.4 0.00032 25.2 2.1 25 1-32 76-100 (119)
274 2lfw_A PHYR sigma-like domain; 49.7 13 0.00045 24.5 3.0 29 1-32 110-138 (157)
275 1xsv_A Hypothetical UPF0122 pr 49.2 16 0.00053 23.2 3.1 29 1-32 42-70 (113)
276 1je8_A Nitrate/nitrite respons 49.0 11 0.00039 22.3 2.3 14 1-14 37-50 (82)
277 3f8m_A GNTR-family protein tra 48.8 21 0.00072 25.7 4.2 31 2-39 38-68 (248)
278 1x3u_A Transcriptional regulat 47.9 18 0.0006 20.7 3.0 14 1-14 32-45 (79)
279 3lmm_A Uncharacterized protein 47.7 3.9 0.00013 33.8 0.0 46 1-56 531-576 (583)
280 1z4h_A TORI, TOR inhibition pr 47.3 9.2 0.00031 21.8 1.6 23 1-30 11-33 (66)
281 3dbi_A Sugar-binding transcrip 47.2 1.8 6.1E-05 32.1 -2.0 53 1-63 4-59 (338)
282 3t72_q RNA polymerase sigma fa 47.0 15 0.00051 23.0 2.7 14 1-14 40-53 (99)
283 3omt_A Uncharacterized protein 46.6 14 0.00048 20.8 2.4 22 1-29 22-43 (73)
284 2yu3_A DNA-directed RNA polyme 46.2 13 0.00044 23.4 2.3 33 2-41 55-87 (95)
285 2rnj_A Response regulator prot 45.3 8.3 0.00028 23.2 1.3 28 1-31 45-72 (91)
286 3gp4_A Transcriptional regulat 45.2 18 0.00062 24.0 3.1 47 1-59 3-49 (142)
287 2l8n_A Transcriptional repress 44.9 9.2 0.00032 22.2 1.4 13 1-13 10-22 (67)
288 3e3m_A Transcriptional regulat 44.9 1.7 5.9E-05 32.5 -2.4 53 1-63 13-68 (355)
289 3ihu_A Transcriptional regulat 44.4 16 0.00056 25.5 2.9 32 3-41 42-73 (222)
290 3eet_A Putative GNTR-family tr 44.1 21 0.00071 26.2 3.5 33 2-41 55-87 (272)
291 1p4w_A RCSB; solution structur 43.6 19 0.00066 22.3 2.9 29 1-32 50-78 (99)
292 1r8d_A Transcription activator 43.5 18 0.00062 22.6 2.8 47 1-59 3-49 (109)
293 3frw_A Putative Trp repressor 43.2 17 0.0006 23.4 2.6 25 1-32 59-83 (107)
294 2xi8_A Putative transcription 43.0 12 0.00041 20.3 1.7 22 1-29 15-36 (66)
295 3jvd_A Transcriptional regulat 42.5 1.8 6.3E-05 32.1 -2.6 53 1-63 7-62 (333)
296 2elh_A CG11849-PA, LD40883P; s 42.5 12 0.00042 22.4 1.8 27 1-34 39-65 (87)
297 3kfw_X Uncharacterized protein 42.1 26 0.00087 25.7 3.7 45 3-61 26-70 (247)
298 3hh0_A Transcriptional regulat 42.1 19 0.00065 24.0 2.8 47 1-59 5-51 (146)
299 3ctp_A Periplasmic binding pro 42.0 2.2 7.4E-05 31.5 -2.2 53 1-63 3-58 (330)
300 3gpv_A Transcriptional regulat 41.8 24 0.00081 23.5 3.3 47 1-59 17-63 (148)
301 1q06_A Transcriptional regulat 41.8 22 0.00075 23.3 3.1 47 1-59 1-47 (135)
302 2fq3_A Transcription regulator 41.4 34 0.0012 21.8 3.8 32 1-39 68-99 (104)
303 1jye_A Lactose operon represso 41.2 2.2 7.4E-05 31.9 -2.3 53 1-63 4-59 (349)
304 2di3_A Bacterial regulatory pr 41.0 18 0.00063 25.5 2.8 31 2-39 30-60 (239)
305 2pi2_A Replication protein A 3 40.4 5.9 0.0002 29.3 0.0 43 1-55 225-268 (270)
306 3h5o_A Transcriptional regulat 40.1 1.9 6.4E-05 32.0 -2.8 53 1-63 5-60 (339)
307 3ulq_B Transcriptional regulat 40.0 19 0.00066 21.8 2.4 28 1-31 45-72 (90)
308 3qq6_A HTH-type transcriptiona 39.8 14 0.00049 21.4 1.7 22 1-29 24-45 (78)
309 1jhf_A LEXA repressor; LEXA SO 39.4 34 0.0012 23.4 3.9 33 2-40 27-59 (202)
310 2kfs_A Conserved hypothetical 39.4 11 0.00037 25.8 1.2 22 1-29 32-53 (148)
311 3h5n_A MCCB protein; ubiquitin 39.2 25 0.00087 26.8 3.5 33 2-41 53-85 (353)
312 1zrv_A Spinigerin; helical pep 39.1 15 0.0005 17.2 1.3 9 25-33 16-24 (26)
313 2v7f_A RPS19, RPS19E SSU ribos 39.1 21 0.00072 24.2 2.7 33 23-61 97-129 (150)
314 2ewt_A BLDD, putative DNA-bind 38.9 28 0.00096 19.1 2.9 22 1-29 22-45 (71)
315 2r1j_L Repressor protein C2; p 38.2 16 0.00054 19.9 1.7 22 1-29 19-40 (68)
316 1zug_A Phage 434 CRO protein; 38.1 16 0.00054 20.1 1.7 22 1-29 17-38 (71)
317 2vz4_A Tipal, HTH-type transcr 38.1 22 0.00076 22.2 2.5 47 1-59 2-48 (108)
318 1t6s_A Conserved hypothetical 37.6 9.9 0.00034 26.2 0.8 46 1-56 109-155 (162)
319 1adr_A P22 C2 repressor; trans 37.6 16 0.00055 20.4 1.7 22 1-29 19-40 (76)
320 2k9q_A Uncharacterized protein 37.6 16 0.00055 20.8 1.7 22 1-29 16-37 (77)
321 1r69_A Repressor protein CI; g 37.4 16 0.00056 19.9 1.7 22 1-29 15-36 (69)
322 2wiu_B HTH-type transcriptiona 37.0 21 0.00073 20.6 2.2 22 1-29 26-47 (88)
323 3b7h_A Prophage LP1 protein 11 36.6 15 0.00052 20.7 1.5 22 1-29 21-42 (78)
324 2k6x_A Sigma-A, RNA polymerase 36.5 53 0.0018 19.0 3.9 33 1-37 24-58 (72)
325 1nd9_A Translation initiation 36.5 16 0.00054 19.1 1.4 25 2-36 4-28 (49)
326 3kz3_A Repressor protein CI; f 36.4 24 0.00082 20.2 2.4 22 1-29 26-47 (80)
327 2b5a_A C.BCLI; helix-turn-heli 36.3 18 0.00061 20.3 1.7 22 1-29 24-45 (77)
328 1d5y_A ROB transcription facto 36.1 16 0.00056 26.3 1.8 58 1-74 20-77 (292)
329 1neq_A DNA-binding protein NER 36.0 10 0.00035 22.3 0.6 20 1-27 23-42 (74)
330 2a6c_A Helix-turn-helix motif; 35.9 17 0.0006 21.2 1.7 22 1-29 32-53 (83)
331 1y7y_A C.AHDI; helix-turn-heli 35.6 19 0.00064 20.0 1.7 22 1-29 27-48 (74)
332 1s7o_A Hypothetical UPF0122 pr 35.3 25 0.00085 22.3 2.4 29 1-32 39-67 (113)
333 2jn6_A Protein CGL2762, transp 35.3 19 0.00064 21.7 1.8 26 1-33 24-49 (97)
334 1stz_A Heat-inducible transcri 35.2 29 0.001 26.4 3.2 36 1-41 37-72 (338)
335 2hye_C Cullin-4A, CUL-4A; beta 34.7 17 0.00058 30.8 1.9 33 1-40 608-642 (759)
336 1j9i_A GPNU1 DBD;, terminase s 34.4 10 0.00035 21.6 0.4 51 1-63 3-53 (68)
337 1y6x_A Phosphoribosyl-ATP pyro 33.9 24 0.00081 22.1 2.1 19 19-37 67-85 (93)
338 3f6w_A XRE-family like protein 33.6 20 0.00069 20.6 1.7 22 1-29 28-49 (83)
339 3bs3_A Putative DNA-binding pr 33.5 21 0.00072 19.9 1.7 22 1-29 24-45 (76)
340 2k9l_A RNA polymerase sigma fa 33.5 31 0.0011 20.3 2.5 25 1-32 49-73 (76)
341 3kjx_A Transcriptional regulat 33.1 3 0.0001 30.9 -2.7 22 1-29 11-32 (344)
342 2ra5_A Putative transcriptiona 33.1 11 0.00038 27.2 0.5 33 2-41 42-74 (247)
343 2jml_A DNA binding domain/tran 33.0 35 0.0012 20.0 2.7 47 1-59 6-53 (81)
344 3t76_A VANU, transcriptional r 33.0 21 0.00072 21.6 1.7 22 1-29 38-59 (88)
345 2ict_A Antitoxin HIGA; helix-t 32.7 27 0.00093 20.6 2.2 22 1-29 22-43 (94)
346 3s8q_A R-M controller protein; 32.6 22 0.00075 20.4 1.7 22 1-29 25-46 (82)
347 1ixc_A CBNR, LYSR-type regulat 32.5 37 0.0013 23.6 3.3 48 2-63 17-67 (294)
348 2l0k_A Stage III sporulation p 32.5 20 0.00067 22.3 1.5 23 1-30 21-43 (93)
349 2a7w_A PRA-PH, phosphoribosyl- 32.3 28 0.00096 22.7 2.3 20 19-38 63-82 (116)
350 2esn_A Probable transcriptiona 31.9 48 0.0016 23.4 3.8 48 2-63 26-76 (310)
351 1u78_A TC3 transposase, transp 31.7 42 0.0015 21.0 3.2 29 1-37 78-106 (141)
352 1yxb_A PRA-PH, phosphoribosyl- 31.7 30 0.001 21.9 2.3 19 19-37 64-82 (98)
353 2pij_A Prophage PFL 6 CRO; tra 31.1 29 0.00099 19.0 2.0 21 2-29 15-35 (67)
354 3qao_A LMO0526 protein, MERR-l 30.9 40 0.0014 24.5 3.2 46 1-58 4-49 (249)
355 1yvw_A PRA-PH, phosphoribosyl- 30.9 31 0.001 22.5 2.3 20 19-38 62-81 (115)
356 3clo_A Transcriptional regulat 30.7 24 0.0008 25.4 1.9 29 1-32 213-241 (258)
357 2kpj_A SOS-response transcript 30.6 24 0.0008 21.0 1.7 22 1-29 23-44 (94)
358 3gbg_A TCP pilus virulence reg 30.5 22 0.00076 25.3 1.8 55 1-72 186-240 (276)
359 1r71_A Transcriptional repress 30.2 19 0.00066 25.0 1.3 25 1-32 53-77 (178)
360 2zhg_A Redox-sensitive transcr 30.1 47 0.0016 22.2 3.3 46 1-59 12-57 (154)
361 3l4g_A Phenylalanyl-tRNA synth 30.1 11 0.00037 30.8 0.0 52 2-64 22-74 (508)
362 1hqc_A RUVB; extended AAA-ATPa 30.0 75 0.0026 22.8 4.7 47 2-62 266-313 (324)
363 3dpl_C Cullin-5; ubiquitin, NE 29.8 22 0.00077 27.5 1.8 32 1-39 216-252 (382)
364 1pdn_C Protein (PRD paired); p 29.7 44 0.0015 20.4 2.9 31 1-38 34-64 (128)
365 3fmy_A HTH-type transcriptiona 29.7 32 0.0011 19.5 2.1 14 1-14 25-38 (73)
366 2ef8_A C.ECOT38IS, putative tr 29.7 26 0.0009 19.9 1.7 22 1-29 24-45 (84)
367 2wus_R RODZ, putative uncharac 29.6 37 0.0013 21.4 2.5 22 1-29 21-42 (112)
368 1ufm_A COP9 complex subunit 4; 29.0 36 0.0012 20.6 2.3 33 1-40 31-63 (84)
369 3htu_A Vacuolar protein-sortin 28.5 66 0.0022 19.4 3.4 31 1-35 28-63 (79)
370 1x57_A Endothelial differentia 28.3 35 0.0012 20.0 2.2 22 1-29 27-48 (91)
371 2o20_A Catabolite control prot 27.9 5.4 0.00018 29.3 -2.0 53 1-63 6-61 (332)
372 3fxq_A LYSR type regulator of 27.8 51 0.0017 23.3 3.3 48 2-63 18-68 (305)
373 1hst_A Histone H5; chromosomal 27.7 91 0.0031 19.0 4.0 33 23-57 49-81 (90)
374 2hsg_A Glucose-resistance amyl 27.2 15 0.0005 26.9 0.3 53 1-63 3-58 (332)
375 2gmg_A Hypothetical protein PF 26.9 56 0.0019 20.9 3.0 35 1-35 25-60 (105)
376 2glo_A Brinker CG9653-PA; prot 26.5 36 0.0012 18.5 1.8 21 3-30 28-48 (59)
377 3g5g_A Regulatory protein; tra 26.3 32 0.0011 21.0 1.7 22 1-29 42-63 (99)
378 1lmb_3 Protein (lambda repress 26.3 31 0.0011 20.1 1.7 22 1-29 31-52 (92)
379 2lfc_A Fumarate reductase, fla 26.2 35 0.0012 22.8 2.0 13 2-14 97-109 (160)
380 2w7n_A TRFB transcriptional re 26.0 41 0.0014 21.2 2.2 25 1-32 35-59 (101)
381 1sgm_A Putative HTH-type trans 25.9 32 0.0011 22.1 1.8 13 1-13 27-39 (191)
382 3ke2_A Uncharacterized protein 25.7 51 0.0017 21.6 2.6 51 2-59 35-86 (117)
383 3i4u_A ATP-dependent RNA helic 25.5 84 0.0029 23.0 4.2 43 23-75 19-62 (270)
384 3trb_A Virulence-associated pr 25.4 32 0.0011 21.3 1.7 22 1-29 28-49 (104)
385 3eus_A DNA-binding protein; st 25.4 53 0.0018 19.1 2.6 21 1-28 28-48 (86)
386 1olt_A Oxygen-independent copr 25.2 70 0.0024 25.0 3.9 52 2-63 384-435 (457)
387 1y10_A Hypothetical protein RV 25.1 23 0.00079 27.8 1.1 24 2-32 68-91 (407)
388 2ev1_A Hypothetical protein RV 25.0 30 0.001 25.1 1.6 23 2-31 80-102 (222)
389 3bil_A Probable LACI-family tr 24.7 6.1 0.00021 29.4 -2.3 53 1-63 9-64 (348)
390 3cec_A Putative antidote prote 24.6 35 0.0012 20.6 1.7 22 1-29 32-53 (104)
391 3bd1_A CRO protein; transcript 24.3 44 0.0015 19.0 2.0 21 2-29 13-33 (79)
392 2dg6_A Putative transcriptiona 24.1 46 0.0016 23.9 2.4 47 1-59 1-47 (222)
393 3f52_A CLP gene regulator (CLG 24.1 49 0.0017 20.3 2.4 22 1-29 42-63 (117)
394 2qen_A Walker-type ATPase; unk 24.0 81 0.0028 22.6 3.9 32 2-40 297-333 (350)
395 3kxa_A NGO0477 protein, putati 23.1 66 0.0023 21.0 2.9 22 1-29 82-103 (141)
396 3szp_A Transcriptional regulat 23.1 52 0.0018 22.6 2.6 48 2-63 17-67 (291)
397 2og0_A Excisionase; protein-DN 22.8 47 0.0016 18.3 1.8 28 1-37 3-30 (52)
398 3lfp_A CSP231I C protein; tran 22.6 74 0.0025 18.8 2.9 14 1-14 15-28 (98)
399 1k78_A Paired box protein PAX5 22.6 69 0.0023 20.5 2.9 31 1-38 49-79 (149)
400 1g2h_A Transcriptional regulat 22.6 82 0.0028 17.3 2.9 21 3-30 36-56 (61)
401 3mlf_A Transcriptional regulat 22.4 51 0.0018 20.4 2.2 22 1-29 37-58 (111)
402 1vz0_A PARB, chromosome partit 22.3 39 0.0013 24.2 1.7 24 1-31 135-158 (230)
403 2v1x_A ATP-dependent DNA helic 22.2 73 0.0025 25.9 3.6 40 23-64 494-536 (591)
404 3bqz_B HTH-type transcriptiona 22.2 55 0.0019 21.1 2.4 13 1-13 23-35 (194)
405 3hhg_A Transcriptional regulat 22.1 45 0.0016 23.3 2.1 48 2-63 19-69 (306)
406 3qkx_A Uncharacterized HTH-typ 22.0 41 0.0014 21.5 1.7 13 1-13 29-41 (188)
407 1b0n_A Protein (SINR protein); 22.0 43 0.0015 20.2 1.7 22 1-29 15-36 (111)
408 3op9_A PLI0006 protein; struct 21.9 53 0.0018 20.0 2.2 22 1-29 23-44 (114)
409 2qko_A Possible transcriptiona 21.8 54 0.0018 21.8 2.4 14 1-14 49-62 (215)
410 2dg8_A Putative TETR-family tr 21.6 45 0.0015 21.8 1.9 14 1-14 30-43 (193)
411 2bnm_A Epoxidase; oxidoreducta 21.5 42 0.0014 22.6 1.7 13 1-13 24-36 (198)
412 4fe7_A Xylose operon regulator 21.4 60 0.0021 24.5 2.8 58 1-74 322-379 (412)
413 2zcm_A Biofilm operon icaabcd 21.2 59 0.002 21.1 2.4 13 1-13 28-40 (192)
414 3vk0_A NHTF, transcriptional r 21.2 35 0.0012 21.1 1.2 22 1-29 35-56 (114)
415 2hyt_A TETR-family transcripti 21.1 48 0.0016 21.8 1.9 14 1-14 33-46 (197)
416 2dg7_A Putative transcriptiona 21.0 60 0.002 21.1 2.4 12 1-12 28-39 (195)
417 2xdn_A HTH-type transcriptiona 21.0 48 0.0016 22.0 1.9 13 1-13 32-44 (210)
418 3f1b_A TETR-like transcription 20.8 60 0.002 21.0 2.4 13 1-13 35-47 (203)
419 3i71_A Ethanolamine utilizatio 20.7 1.3E+02 0.0044 17.3 3.4 41 1-55 19-59 (68)
420 3ppb_A Putative TETR family tr 20.6 36 0.0012 21.9 1.2 13 1-13 30-42 (195)
421 2fq4_A Transcriptional regulat 20.3 46 0.0016 21.8 1.7 12 1-12 33-44 (192)
422 3vpr_A Transcriptional regulat 20.2 47 0.0016 21.6 1.7 13 1-13 24-36 (190)
423 2cw1_A SN4M; lambda CRO fold, 20.2 86 0.0029 17.9 2.7 22 2-30 15-36 (65)
424 2dce_A KIAA1915 protein; swirm 20.2 70 0.0024 20.5 2.5 22 16-41 83-104 (111)
425 3gzi_A Transcriptional regulat 20.1 51 0.0017 21.8 1.9 14 1-14 38-51 (218)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.77 E-value=5.5e-19 Score=138.84 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=97.1
Q ss_pred CCHHHHHHhCCC--CCCCchhhhhhHHHHHHHHHhcCcceeeccCC-CC-cccceechHhhhhhhcCC-CCcHHHHHHHh
Q 045905 1 MTLNELINALPF--HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQ-ND-QERSYVATNASKLLLKDI-TLTVRSFLQAV 75 (128)
Q Consensus 1 ~S~~eLA~~~~~--~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~-~~-~~~~y~~T~~s~~L~~~~-~~s~~~~~~~~ 75 (128)
+|++|||+++++ +|.++. .|+||||+|++.|+|.+..... ++ .+++|++||+|+.|+.+. +.++++++.+.
T Consensus 57 ~t~~eLA~~~g~~~~~~~~~----~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~ 132 (364)
T 3p9c_A 57 LTPTEVAAKLPSAANPEAPD----MVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMN 132 (364)
T ss_dssp BCHHHHHHTTTCTTCTTHHH----HHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHH
T ss_pred CCHHHHHHhcCCCCCccchh----hHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHh
Confidence 489999999997 775566 8999999999999999873111 11 136899999999998764 46899999998
Q ss_pred cChhhHHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 76 LDPILTTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
.++.++.+|.+|.+++++|. +||+.+||.++|+|+.++|+..+
T Consensus 133 ~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~ 175 (364)
T 3p9c_A 133 QDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNR 175 (364)
T ss_dssp TSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHH
T ss_pred cCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHH
Confidence 89999999999999999988 89999999999999999997654
No 2
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.74 E-value=2e-18 Score=134.64 Aligned_cols=115 Identities=30% Similarity=0.488 Sum_probs=97.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeecc--CC-CCc-ccceechHhhhhhhcCCCCcHHHHHHHhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNF--GQ-NDQ-ERSYVATNASKLLLKDITLTVRSFLQAVL 76 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~--~~-~~~-~~~y~~T~~s~~L~~~~~~s~~~~~~~~~ 76 (128)
+|++|||++++++|.++. .|+|+||+|++.|+|.+..+ .+ +|. +++|++|++|+.|+.+.+.++++++.+..
T Consensus 46 ~t~~eLA~~~g~~~~~~~----~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~ 121 (358)
T 1zg3_A 46 MTLSELASSLKLHPSKVN----ILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGAL 121 (358)
T ss_dssp EEHHHHHHHTTCCTTTHH----HHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHT
T ss_pred cCHHHHHHhcCCCCcchH----HHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhc
Confidence 478999999999876778 99999999999999998710 00 000 36899999999999887778999999998
Q ss_pred ChhhHHHHHhHHHhhhcCC-CChhhhccCCChhHhhhcCccchh
Q 045905 77 DPILTTPCQHVTTWFQNDD-LRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 77 ~~~~~~~~~~l~~~~~~g~-~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
++.++.+|.+|.+++++|. .++|+.++|.++|+|+.++|+..+
T Consensus 122 ~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~ 165 (358)
T 1zg3_A 122 HPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESST 165 (358)
T ss_dssp SHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHH
T ss_pred CcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhh
Confidence 8889999999999999983 389999999999999999998765
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.74 E-value=3.8e-18 Score=132.75 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=94.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHHhcChhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPIL 80 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~~~~~~~ 80 (128)
+|++|||+++|++ +. .|+|+||+|++.|+|.+ . +++|++|++|+.|+.+.+.++++++.+..++.+
T Consensus 56 ~t~~elA~~~g~~---~~----~l~rlLr~l~~~g~l~~-~------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~ 121 (348)
T 3lst_A 56 RTPAELAAATGTD---AD----ALRRVLRLLAVRDVVRE-S------DGRFALTDKGAALRSDSPVPARAGILMFTDTMF 121 (348)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEE-E------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHH
T ss_pred CCHHHHHHHhCcC---HH----HHHHHHHHHHhCCCEEe-c------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHH
Confidence 4899999999994 48 99999999999999998 4 478999999999988777789999999888888
Q ss_pred HHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 81 TTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 81 ~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
+.+|.+|.+++++|. ++|+.++|.++|+|+.++|+..+
T Consensus 122 ~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~ 159 (348)
T 3lst_A 122 WTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEA 159 (348)
T ss_dssp HHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHH
Confidence 999999999999887 78999999999999999997654
No 4
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.74 E-value=2.8e-18 Score=134.89 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=96.1
Q ss_pred CCHHHHHHhCC-CCCCCchhhhhhHHHHHHHHHhcCcceeeccC-CCCc-ccceechHhhhhhhcCC-CCcHHHHHHHhc
Q 045905 1 MTLNELINALP-FHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG-QNDQ-ERSYVATNASKLLLKDI-TLTVRSFLQAVL 76 (128)
Q Consensus 1 ~S~~eLA~~~~-~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~-~~~~-~~~y~~T~~s~~L~~~~-~~s~~~~~~~~~ 76 (128)
+|++|||++++ .+|.++. .|+|+||+|++.|+|.+.... ++|. +++|++|++|+.|+.+. +.++++++.+..
T Consensus 60 ~t~~eLA~~~~~~~~~~~~----~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~ 135 (368)
T 3reo_A 60 ISPAEIAAQLPTTNPEAPV----MLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLAT 135 (368)
T ss_dssp BCHHHHHTTSSCCCTTHHH----HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHT
T ss_pred cCHHHHHHhcCcCCCcchh----hHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhc
Confidence 48899999998 4665567 999999999999999986211 1111 36899999999998764 568999999999
Q ss_pred ChhhHHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 77 DPILTTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 77 ~~~~~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
++.++.+|.+|.+++++|. ++|+.++|.++|+|+.++|++.+
T Consensus 136 ~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~ 177 (368)
T 3reo_A 136 DKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINK 177 (368)
T ss_dssp CHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHH
T ss_pred CHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHH
Confidence 9999999999999999988 89999999999999999998754
No 5
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.73 E-value=2.5e-18 Score=133.85 Aligned_cols=110 Identities=28% Similarity=0.447 Sum_probs=96.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHHhcChhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPIL 80 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~~~~~~~ 80 (128)
+|++|||++++++|.++. .|+|+||+|++.|+|.+... +++.|++|++|+.|+.+.+.++++++.+..++.+
T Consensus 52 ~t~~ela~~~~~~~~~~~----~l~rlLr~L~~~gll~~~~~----~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~ 123 (352)
T 1fp2_A 52 ISLSNLVSILQVPSSKIG----NVRRLMRYLAHNGFFEIITK----EEESYALTVASELLVRGSDLCLAPMVECVLDPTL 123 (352)
T ss_dssp EEHHHHHHHHTCCGGGHH----HHHHHHHHHHHTTSEEEEES----SSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHH
T ss_pred ccHHHHHHHhCcCCCChH----HHHHHHHHHHhCCeEEEecC----CCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchH
Confidence 378999999999776678 99999999999999998720 0478999999999998877789999999988888
Q ss_pred HHHHHhHHHhhh-cCCCChhhhccCCChhHhhhcCccchh
Q 045905 81 TTPCQHVTTWFQ-NDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 81 ~~~~~~l~~~~~-~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
+.+|.+|.++++ +|. ++|+.++|.++|+|+.++|+..+
T Consensus 124 ~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (352)
T 1fp2_A 124 SGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNT 162 (352)
T ss_dssp HHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHH
Confidence 999999999999 666 89999999999999999998765
No 6
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.70 E-value=9.1e-18 Score=131.64 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=83.8
Q ss_pred CCHHHHHHhCCC---CCCCchhhhhhHHHHHHHHHhcCcceeeccC-CCC-cccceechHhhhhhhcCCC-CcHHHHHHH
Q 045905 1 MTLNELINALPF---HPIKAQYVAQYVYRFMWILVHSGFFAQQNFG-QND-QERSYVATNASKLLLKDIT-LTVRSFLQA 74 (128)
Q Consensus 1 ~S~~eLA~~~~~---~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~-~~~-~~~~y~~T~~s~~L~~~~~-~s~~~~~~~ 74 (128)
+|++|||+++++ +|.++. .|+|+||+|++.|+|.+.... ++| .+++|++|++|+.|+.+.+ .++++++.+
T Consensus 63 ~t~~eLA~~~~~~~~~~~~~~----~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~ 138 (372)
T 1fp1_D 63 MSPSEIASKLPASTQHSDLPN----RLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTF 138 (372)
T ss_dssp BCHHHHHTTSCGGGCCTTHHH----HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHH
T ss_pred cCHHHHHHhcCCCCCCCcChH----HHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHH
Confidence 478999999999 765677 999999999999999987200 000 0258999999999998766 679999999
Q ss_pred hcChhhHHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 75 VLDPILTTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
..++.++.+|.+|.+++++|..+||+.++|.++|+|+.++|+..+
T Consensus 139 ~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (372)
T 1fp1_D 139 LCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQ 183 (372)
T ss_dssp HTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHH
T ss_pred hcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHH
Confidence 988889999999999999982389999999999999999998764
No 7
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.70 E-value=2.2e-17 Score=129.61 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccc-eechHhhhhhhcCCCCcHHHHHHHhcChh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERS-YVATNASKLLLKDITLTVRSFLQAVLDPI 79 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~-y~~T~~s~~L~~~~~~s~~~~~~~~~~~~ 79 (128)
+|++|||+++|++ +. .|+|+||+|++.|+|.+.. +++ |.+|++|+.|+.+.+.++++++.++.++.
T Consensus 72 ~t~~eLA~~~g~~---~~----~l~rlLr~L~~~g~l~~~~------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~ 138 (369)
T 3gwz_A 72 RTATALAEATGAH---EQ----TLRRLLRLLATVGVFDDLG------HDDLFAQNALSAVLLPDPASPVATDARFQAAPW 138 (369)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHTTSSEECS------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHH
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHhCCCEEEeC------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHH
Confidence 4789999999994 48 9999999999999999875 467 99999999998877778999999988887
Q ss_pred hHHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 80 LTTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 80 ~~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
++..|.+|.+++++|. ++|...+|.++|+|+.++|+..+
T Consensus 139 ~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~ 177 (369)
T 3gwz_A 139 HWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARE 177 (369)
T ss_dssp HHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHH
T ss_pred HHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHH
Confidence 8899999999999988 78999999999999999998665
No 8
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.69 E-value=3.6e-17 Score=125.97 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=92.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHHhcChhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPIL 80 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~~~~~~~ 80 (128)
+|++|||+++|++ +. .|+|+||+|++.|+|.+.. ++.|.+|++|+.|+ +.+.++++++.+..++.+
T Consensus 42 ~t~~ela~~~~~~---~~----~l~r~Lr~L~~~g~l~~~~------~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~ 107 (334)
T 2ip2_A 42 DSDETLAAAVGSD---AE----RIHRLMRLLVAFEIFQGDT------RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH 107 (334)
T ss_dssp CSHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEET------TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH
T ss_pred CCHHHHHHHhCcC---HH----HHHHHHHHHHhCCceEecC------CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh
Confidence 5899999999994 48 9999999999999999875 47899999999999 666689999999888766
Q ss_pred HHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 81 TTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 81 ~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
..|.+|.++++++. ++|+.++|.++|+|+.++|+..+
T Consensus 108 -~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 144 (334)
T 2ip2_A 108 -AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGR 144 (334)
T ss_dssp -HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHH
T ss_pred -hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHH
Confidence 99999999999988 79999999999999999997654
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.68 E-value=2.2e-17 Score=127.32 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHHhcChhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPIL 80 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~~~~~~~ 80 (128)
+|++|||++++++ +. .|+|+||+|++.|||.+.. +++|.+|++|+.|+.+.+.++++++.+..++..
T Consensus 39 ~t~~elA~~~~~~---~~----~l~rlLr~l~~~gl~~~~~------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~ 105 (332)
T 3i53_A 39 RTAAEIASAAGAH---AD----SLDRLLRHLVAVGLFTRDG------QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGR 105 (332)
T ss_dssp CBHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEECT------TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHH
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHhCCcEEecC------CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhH
Confidence 5899999999994 48 9999999999999999875 478999999999987777789999888776666
Q ss_pred H-HHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 81 T-TPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 81 ~-~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
+ ..|.+|.+++++|. ++|+.++|.++|+|+.++|+..+
T Consensus 106 ~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 144 (332)
T 3i53_A 106 GDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSA 144 (332)
T ss_dssp HGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHH
T ss_pred HHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHH
Confidence 7 89999999999988 78999999999999999998654
No 10
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.60 E-value=5.8e-16 Score=120.67 Aligned_cols=105 Identities=15% Similarity=0.085 Sum_probs=91.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCccc--ceechHhhhhhhcCCCCcHHHHHHHhcCh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQER--SYVATNASKLLLKDITLTVRSFLQAVLDP 78 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~--~y~~T~~s~~L~~~~~~s~~~~~~~~~~~ 78 (128)
+|++|||+++|++ +. .|+|+||+|++.|+|.+.. ++ .|.+|++|+.|+.+.+.++++++.+..++
T Consensus 50 ~t~~eLA~~~g~~---~~----~l~r~Lr~L~~~Gll~~~~------~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~ 116 (374)
T 1qzz_A 50 DTLAGLADRTDTH---PQ----ALSRLVRHLTVVGVLEGGE------KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAV 116 (374)
T ss_dssp CSHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEECCC------C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHH
T ss_pred CCHHHHHHHhCcC---HH----HHHHHHHHHhhCCCEEEeC------CCCeEEEEChHHHhhcCCCcccHHHHHHHcCCh
Confidence 5899999999994 48 9999999999999999854 35 89999999999988777899998888776
Q ss_pred hhH-HHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 79 ILT-TPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 79 ~~~-~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
..+ ..|.+|.+++++|. ++|+..+|.++|+++..+|+..+
T Consensus 117 ~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 157 (374)
T 1qzz_A 117 SHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALAD 157 (374)
T ss_dssp HHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHH
Confidence 677 89999999999987 78999999999999998887654
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.59 E-value=1.5e-15 Score=118.93 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=84.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHHhcChhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPIL 80 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~~~~~~~ 80 (128)
+|++|||+++|++ +. .|+|+||+|++.|+|.+. +++|++|++|+.|+.+.+ ...+ +....+.+
T Consensus 51 ~t~~eLA~~~g~~---~~----~l~rlLr~l~~~g~l~~~-------~~~y~~t~~s~~L~~~~~--~~~~-~~~~~~~~ 113 (363)
T 3dp7_A 51 YTLQEISGRTGLT---RY----AAQVLLEASLTIGTILLE-------EDRYVLAKAGWFLLNDKM--ARVN-MEFNHDVN 113 (363)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHHTSEEEE-------TTEEEECHHHHHHHHCHH--HHHH-HHHHHHTT
T ss_pred CCHHHHHHHhCcC---HH----HHHHHHHHHhhCCCeEec-------CCEEecccchHHhhCCCc--ccch-heeecHHh
Confidence 4899999999994 48 999999999999999875 378999999999997653 3333 33445678
Q ss_pred HHHHHhHHHhhhcCCCChhhhccC--CChhHhhhcCccchh
Q 045905 81 TTPCQHVTTWFQNDDLRCLTRHMG--WHFESILGTSQRSTI 119 (128)
Q Consensus 81 ~~~~~~l~~~~~~g~~~~f~~a~G--~~~fe~~~~~p~~~~ 119 (128)
+++|.+|.+++++|. ++|..++| .++|+|+.++|+..+
T Consensus 114 ~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (363)
T 3dp7_A 114 YQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQ 153 (363)
T ss_dssp HHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHH
T ss_pred hhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHH
Confidence 899999999999988 67999999 689999999998554
No 12
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.56 E-value=1.9e-15 Score=117.36 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=92.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHHhcChh-
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDPI- 79 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~~~~~~- 79 (128)
+|++|||++++++ +. .|+|+||+|++.|+|.+.. +++|.+|++|+.|+.+.+.++++++.+..++.
T Consensus 53 ~t~~ela~~~~~~---~~----~l~r~L~~L~~~g~~~~~~------~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~ 119 (360)
T 1tw3_A 53 RTVKALAARTDTR---PE----ALLRLIRHLVAIGLLEEDA------PGEFVPTEVGELLADDHPAAQRAWHDLTQAVAR 119 (360)
T ss_dssp CBHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEE------TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHH
T ss_pred CCHHHHHHHhCcC---HH----HHHHHHHHHHHCCCEEecC------CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchh
Confidence 4789999999994 48 9999999999999999865 47899999999999887778999887777655
Q ss_pred hHHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 80 LTTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 80 ~~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
.+..|.+|.+++++|. ++|+..+|.++|+++..+|+...
T Consensus 120 ~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~ 158 (360)
T 1tw3_A 120 ADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRA 158 (360)
T ss_dssp HGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHH
Confidence 6789999999999987 68999999999999998887654
No 13
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.47 E-value=4.6e-14 Score=110.34 Aligned_cols=107 Identities=11% Similarity=0.016 Sum_probs=87.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh-hhcCCCCcHHHHHHHhcChh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL-LLKDITLTVRSFLQAVLDPI 79 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~-L~~~~~~s~~~~~~~~~~~~ 79 (128)
+|++|||+++++ ++. .|+|+||+|++.|+|.+... +..++|++|++|+. |+.+.+.++.+++.+.. +.
T Consensus 44 ~t~~eLA~~~g~---~~~----~l~rlLr~L~~~gll~~~~~---~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~ 112 (353)
T 4a6d_A 44 LDVAAVAAGVRA---SAH----GTELLLDICVSLKLLKVETR---GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RT 112 (353)
T ss_dssp BCHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HT
T ss_pred CCHHHHHHhhCc---CHH----HHHHHHHHHHHCCCEEEecc---CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HH
Confidence 478999999999 448 99999999999999986542 11468999999985 55566678888877754 57
Q ss_pred hHHHHHhHHHhhhcCCCChhhhccC---CChhHhhhcCccchh
Q 045905 80 LTTPCQHVTTWFQNDDLRCLTRHMG---WHFESILGTSQRSTI 119 (128)
Q Consensus 80 ~~~~~~~l~~~~~~g~~~~f~~a~G---~~~fe~~~~~p~~~~ 119 (128)
.+..|.+|.+++++|. ++|..++| .++|+++.++|+...
T Consensus 113 ~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (353)
T 4a6d_A 113 SYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERL 154 (353)
T ss_dssp HHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHH
Confidence 7899999999999988 78999998 468999999997654
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.43 E-value=9.6e-14 Score=106.36 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh-hhhhcCCCCcHHHHHHHhcChh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS-KLLLKDITLTVRSFLQAVLDPI 79 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s-~~L~~~~~~s~~~~~~~~~~~~ 79 (128)
+|++|||+++|++ +. .|+|+||+|++.|+|.+. +++|++|++| +.|+.+.+.++++++.+..++.
T Consensus 40 ~t~~ela~~~~~~---~~----~l~r~L~~L~~~g~l~~~-------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (335)
T 2r3s_A 40 ESSQSLAQKCQTS---ER----GMRMLCDYLVIIGFMTKQ-------AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPM 105 (335)
T ss_dssp ECHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHH
T ss_pred CCHHHHHHHhCCC---ch----HHHHHHHHHHhcCCeEec-------CCEEecCHHHHHHhccCCcHHHHHHHHHhcchh
Confidence 4789999999994 48 999999999999999864 3789999999 7888777777889988888878
Q ss_pred hHHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCccchh
Q 045905 80 LTTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQRSTI 119 (128)
Q Consensus 80 ~~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~~~~ 119 (128)
++..|.+|.++++++. ++|+ + |+++.++|+...
T Consensus 106 ~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~ 138 (335)
T 2r3s_A 106 ITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWV 138 (335)
T ss_dssp HHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHH
T ss_pred hHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHH
Confidence 8899999999999987 5665 3 777777776554
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.30 E-value=1.6e-12 Score=101.15 Aligned_cols=90 Identities=7% Similarity=-0.078 Sum_probs=74.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh-hhhhhcCCC---CcHHHHHHHhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA-SKLLLKDIT---LTVRSFLQAVL 76 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~-s~~L~~~~~---~s~~~~~~~~~ 76 (128)
+|++|||+++|++ +. .|+|+||+|++.|+|.+.+ ++|++|+. +++|+.+.+ .++++++.+.
T Consensus 65 ~t~~eLA~~~g~~---~~----~l~rlLr~L~~~gll~~~~-------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~- 129 (359)
T 1x19_A 65 KDLATLAADTGSV---PP----RLEMLLETLRQMRVINLED-------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM- 129 (359)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-
T ss_pred CCHHHHHHHhCcC---hH----HHHHHHHHHHhCCCeEeeC-------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-
Confidence 4889999999994 48 9999999999999999864 58999996 667777666 6788888776
Q ss_pred ChhhHHHHHhHHHhhhcCCCChhhhccCCChhHhhhcCcc
Q 045905 77 DPILTTPCQHVTTWFQNDDLRCLTRHMGWHFESILGTSQR 116 (128)
Q Consensus 77 ~~~~~~~~~~l~~~~~~g~~~~f~~a~G~~~fe~~~~~p~ 116 (128)
.+.++.+|.+|.+++++|.+ |+|+.+||+
T Consensus 130 ~~~~~~~~~~L~~~l~~g~~-----------~~~~~~~p~ 158 (359)
T 1x19_A 130 AFLADDFYMGLSQAVRGQKN-----------FKGQVPYPP 158 (359)
T ss_dssp HHHHHHTGGGHHHHHTTSCC-----------CCCSSCSSC
T ss_pred HHHHHHHHHHHHHHHhcCCC-----------CcccccCch
Confidence 45788999999999998762 666666666
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.22 E-value=9.9e-12 Score=96.06 Aligned_cols=86 Identities=6% Similarity=0.063 Sum_probs=69.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh-hcCCCCcHHHHHHHhcChh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL-LKDITLTVRSFLQAVLDPI 79 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L-~~~~~~s~~~~~~~~~~~~ 79 (128)
+|++|||+++|+++ . .|+|+||+|++.|+|.+.. +.|.+|+.|+.+ .++.+.++..++.+. ..
T Consensus 57 ~t~~elA~~~~~~~---~----~l~rlLr~L~~~gll~~~~-------~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~ 120 (352)
T 3mcz_A 57 RTPAEVAASFGMVE---G----KAAILLHALAALGLLTKEG-------DAFRNTALTERYLTTTSADYIGPIVEHQ--YL 120 (352)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHHSTTCTTCCHHHHHHH--HT
T ss_pred CCHHHHHHHhCcCh---H----HHHHHHHHHHHCCCeEecC-------CeeecCHHHHhhccCCChhhHHHHHHHh--HH
Confidence 48999999999944 8 9999999999999999864 579999999854 455566777776654 35
Q ss_pred hHHHHHhHHHhhhcCCCChhhhc
Q 045905 80 LTTPCQHVTTWFQNDDLRCLTRH 102 (128)
Q Consensus 80 ~~~~~~~l~~~~~~g~~~~f~~a 102 (128)
++..|.+|.+++++|.+.+|+..
T Consensus 121 ~~~~~~~l~~~l~~g~~~~f~~~ 143 (352)
T 3mcz_A 121 QWDNWPRLGEILRSEKPLAFQQE 143 (352)
T ss_dssp TTTTGGGHHHHHTCSSCCTTSHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccc
Confidence 67899999999999875555543
No 17
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.72 E-value=0.0053 Score=40.34 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=44.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh-cCC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL-KDI 64 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~-~~~ 64 (128)
+|..|||+.+++ +.. .+.|+++-|...|++.......|+....|.+|+.|+.+. ...
T Consensus 46 ~~~~ela~~l~i---s~~----~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~ 103 (142)
T 3bdd_A 46 LHQLALQERLQI---DRA----AVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP 103 (142)
T ss_dssp BCHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSC
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 478999999999 448 999999999999999765432222234699999999888 553
No 18
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.69 E-value=0.0025 Score=41.09 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=41.9
Q ss_pred CCHHHHHHhC-CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINAL-PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~-~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
++..||++.+ ++ ++. .|.|.|+.|...|++......++.....|.+|+.|+.+.
T Consensus 28 ~~~~eLa~~l~~i---s~~----tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 28 KRTSELKRLMPNI---TQK----MLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp BCHHHHHHHCTTS---CHH----HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred CCHHHHHHHhcCC---CHH----HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 4689999999 99 448 999999999999999765432222224699999997765
No 19
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.57 E-value=0.0026 Score=41.96 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=42.8
Q ss_pred CCHHHHHHhC--CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCC
Q 045905 1 MTLNELINAL--PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDI 64 (128)
Q Consensus 1 ~S~~eLA~~~--~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~ 64 (128)
+|+.|||..+ ++. .+ .+.+-|+.|...|++.... .+.|.+|+.++.+..+.
T Consensus 28 ~s~~eLA~~l~~giS---~~----aVs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 28 GSPKELEDRDEIRIS---KS----SVSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLNGE 80 (111)
T ss_dssp BCHHHHHTSTTCCSC---HH----HHHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHTTC
T ss_pred CCHHHHHHHHhcCCC---HH----HHHHHHHHHHHCCCEEecC------CceEEECchHHHHHHHH
Confidence 4789999999 884 47 8999999999999998654 35899999998777543
No 20
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.50 E-value=0.0037 Score=40.62 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred CCHHHHHHhC-CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINAL-PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~-~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
++..|||+.+ ++ +.. .+.|.|+.|...|++.......+.....|.+|+.|+.+..
T Consensus 36 ~~~~eLa~~l~~i---s~~----tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 36 KRNGELMRALDGI---TQR----VLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp BCHHHHHHHSTTC---CHH----HHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHhccC---CHH----HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 4789999999 99 448 9999999999999997654322222246999999987753
No 21
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.49 E-value=0.0038 Score=40.92 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++.|...|++.......+.....|.+|+.|+.+...
T Consensus 48 ~~~~ela~~l~~~~---~----tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 48 VSMSKLIENMGCVP---S----NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp EEHHHHHHHCSSCC---T----THHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCCCh---h----HHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 36789999999955 7 89999999999999976543222222458999999988753
No 22
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.47 E-value=0.0062 Score=40.28 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=43.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ .. .+.|+++-|...|++.......|.....+.+|+.|+.+...
T Consensus 51 ~~~~ela~~l~~s---~~----tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 51 KTMAYLANRYFVT---QS----AITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp BCHHHHHHHTTCC---HH----HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHhCCC---ch----hHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 4789999999994 48 99999999999999976543222223458999999988754
No 23
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.38 E-value=0.0054 Score=41.51 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=42.4
Q ss_pred CCHHHHHHhC-CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINAL-PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~-~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
++..||+..+ ++. +. .|.+.|+.|...|++......++.....|.+|+.|+.|..
T Consensus 40 ~rf~eL~~~l~gIs---~~----~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 40 KRFNEFRRICPSIT---QR----MLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp BCHHHHHHHCTTSC---HH----HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred cCHHHHHHHhcccC---HH----HHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 3688999999 884 47 9999999999999997654322211246999999998864
No 24
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.33 E-value=0.0048 Score=38.47 Aligned_cols=54 Identities=7% Similarity=0.061 Sum_probs=40.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+|..|||+.++++ .. .+.|.|+.|...|++......+++....|.+|+.++.+.
T Consensus 31 ~~~~ela~~l~is---~~----tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~ 84 (100)
T 1ub9_A 31 APFSQIQKVLDLT---PG----NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA 84 (100)
T ss_dssp EEHHHHHHHTTCC---HH----HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred cCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHH
Confidence 3678999999994 48 899999999999999754321122235799999996554
No 25
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.30 E-value=0.0046 Score=40.57 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=42.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......+.....|.+|+.|+.+...
T Consensus 53 ~t~~ela~~l~~---~~~----tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 53 CPQNQLGRLTAM---DAA----TIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp BCHHHHHHHTTC---CHH----HHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 478999999999 448 99999999999999976532121112359999999887653
No 26
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.28 E-value=0.0083 Score=40.77 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=44.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 61 ~t~~eLa~~l~~~~---~----tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 61 LSNAKLAERSFIKP---Q----SANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp CCHHHHHHHHTSCG---G----GHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHH
Confidence 57899999999944 7 89999999999999976543232222469999999988754
No 27
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.26 E-value=0.0046 Score=39.81 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=41.2
Q ss_pred CHHHHHHhCC-CCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 2 TLNELINALP-FHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 2 S~~eLA~~~~-~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+..||++.++ + ++. .|.+.|+.|...|++......++.....|.+|+.|+.+..
T Consensus 40 ~~~eL~~~l~gi---s~~----~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 40 RYGELKRAIPGI---SEK----MLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp EHHHHHHHSTTC---CHH----HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred CHHHHHHHcccC---CHH----HHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 6789999995 8 448 9999999999999997654322211246999999987653
No 28
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.26 E-value=0.0043 Score=41.17 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=42.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ +. .+.|+++-|...|++.......|.-...+.+|+.|+.+...
T Consensus 52 ~t~~eLa~~l~~~---~~----~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 52 ISQKEIALWTKKD---TP----TVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCCC---Hh----hHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 3678999999994 48 99999999999999976543222223468999999988754
No 29
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.26 E-value=0.0068 Score=39.83 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=43.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++......+|.....+.+|+.|+.+...
T Consensus 51 ~~~~ela~~l~~---~~~----tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~ 106 (141)
T 3bro_A 51 VLQRDLESEFSI---KSS----TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETI 106 (141)
T ss_dssp CBHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHH
T ss_pred cCHHHHHHHHCC---Ccc----hHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHH
Confidence 478999999999 447 89999999999999976543222212368899999887653
No 30
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.25 E-value=0.0062 Score=41.57 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=42.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
++..||++.+++ ... .|.+.|+.|...|++......++. ...|.+|+.|+.|.
T Consensus 38 ~~~~eLa~~lgi---s~~----tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 38 TRFGEFQKSLGL---AKN----ILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp CSHHHHHHHHCC---CHH----HHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCHHHHHHHhCC---CHH----HHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 478999999999 448 999999999999999765432333 45799999998765
No 31
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.23 E-value=0.0056 Score=40.86 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=41.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+|..|||+.+++++ . .+.|+++.|...|++.... .+.|.+|+.|+.+..
T Consensus 23 ~~~~ela~~l~vs~---~----tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 23 ARVSDIAEALAVHP---S----SVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIGK 71 (142)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEEEee------CceEEEchhHHHHHH
Confidence 47899999999944 8 8999999999999997664 367999999987764
No 32
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.21 E-value=0.0061 Score=39.67 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=41.5
Q ss_pred CCHHHHHHhC-CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINAL-PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~-~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+|..||++.+ ++. +. .|.|.|+.|...|++..... ....|.+|+.|+.|..
T Consensus 43 ~~~~eL~~~l~gis---~~----~ls~~L~~Le~~GlV~r~~~----r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 43 QNFNDIRSSIPGIS---ST----ILSRRIKDLIDSGLVERRSG----QITTYALTEKGMNVRN 94 (111)
T ss_dssp BCHHHHHHTSTTCC---HH----HHHHHHHHHHHTTSEEEEES----SSEEEEECHHHHHHHH
T ss_pred CCHHHHHHHccCCC---HH----HHHHHHHHHHHCCCEEEeec----CcEEEEECccHHHHHH
Confidence 3589999999 894 48 99999999999999976531 1357999999988763
No 33
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.18 E-value=0.0093 Score=40.11 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=43.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......+.....|.+|+.|+.+...
T Consensus 59 ~t~~ela~~l~i---s~~----tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 114 (154)
T 2eth_A 59 KKMKEIAEFLST---TKS----NVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGE 114 (154)
T ss_dssp BCHHHHHHHTTS---CHH----HHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHH
Confidence 478999999999 447 89999999999999976543222222458999999988754
No 34
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.18 E-value=0.0045 Score=41.08 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=38.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 52 ~t~~eLa~~l~~~~---~----tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 52 LNLQDLGRQMCRDK---A----LITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp CCHHHHHHHHC------C----HHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred cCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 57899999999954 7 89999999999999976543222212358999999988754
No 35
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.16 E-value=0.0077 Score=39.73 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=43.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ .. .+.|+++-|...|++.......|.....+.+|+.|+.+...
T Consensus 53 ~t~~~la~~l~~s---~~----~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (146)
T 2fbh_A 53 PTQRELAQSVGVE---GP----TLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIAD 108 (146)
T ss_dssp CBHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHH
T ss_pred CCHHHHHHHhCCC---hh----hHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHH
Confidence 4789999999994 48 89999999999999976543222222458999999888653
No 36
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.13 E-value=0.0029 Score=37.77 Aligned_cols=41 Identities=5% Similarity=0.144 Sum_probs=33.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
+|..|||+++|++. . .+.|+|..|...|++.... .++|.++
T Consensus 26 ~s~~eLA~~lglsr---~----tv~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 26 VAIFQLVKKCQVPK---K----TLNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp EEHHHHHHHHCSCH---H----HHHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCcEecCC------CceEeeC
Confidence 46899999999944 7 8999999999999976543 4678764
No 37
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.13 E-value=0.0051 Score=40.53 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=43.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ +. .+.|+++-|...|++.......|.-...+.+|+.|+.+...
T Consensus 48 ~t~~ela~~l~~~---~~----tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 48 LTQNDIAKALQRT---GP----TVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHhCCC---cc----cHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHH
Confidence 3678999999994 48 99999999999999976543232223468999999988754
No 38
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.10 E-value=0.006 Score=40.71 Aligned_cols=56 Identities=9% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 58 ~t~~eLa~~l~~~~---~----~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 113 (148)
T 3jw4_A 58 IIQKDLAQFFGRRG---A----SITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEE 113 (148)
T ss_dssp CCHHHHHHC-------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCh---h----HHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHH
Confidence 47899999999954 7 89999999999999975543222212468999999988754
No 39
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.09 E-value=0.005 Score=40.98 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=40.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ +. .+.|+++-|...|++.......|.....+.+|+.|+.+...
T Consensus 55 ~t~~ela~~l~~~---~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 55 CSVQKISDILGLD---KA----AVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHH
Confidence 4789999999994 48 99999999999999976543222223469999999988754
No 40
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.09 E-value=0.0076 Score=40.01 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=43.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||..++++ .. .+.|+++-|...|++.......|.-...+.+|+.|+.+...
T Consensus 46 ~t~~eLa~~l~~~---~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 101 (145)
T 3g3z_A 46 RTQKHIGEKWSLP---KQ----TVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAP 101 (145)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHH
Confidence 4789999999994 48 99999999999999976543222222469999999988754
No 41
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.08 E-value=0.0034 Score=47.17 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|+.|||+++|++. . .++|+|+.|+..|++..+. ++.|.+++.--.|
T Consensus 46 ltl~eia~~lgl~k---s----Tv~RlL~tL~~~G~v~~~~------~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 46 LTAAELTRFLDLPK---S----SAHGLLAVMTELDLLARSA------DGTLRIGPHSLRW 92 (275)
T ss_dssp EEHHHHHHHHTCC---------CHHHHHHHHHHTTSEEECT------TSEEEECTHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEECC------CCcEEehHHHHHH
Confidence 47899999999965 7 8999999999999998764 3689999875444
No 42
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.07 E-value=0.0078 Score=40.04 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=42.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......+.....+.+|+.|+.+...
T Consensus 57 ~t~~ela~~l~~---~~~----tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 57 LTVGELSNKMYL---ACS----TTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp BCHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---Cch----hHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHH
Confidence 478999999999 448 99999999999999976543222222458999999988754
No 43
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.06 E-value=0.0087 Score=39.65 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=41.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......|.....+.+|+.|+.+...
T Consensus 51 ~~~~~la~~l~i---~~~----~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (147)
T 2hr3_A 51 VTPSELAAAERM---RSS----NLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYG 106 (147)
T ss_dssp BCHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHH
T ss_pred CCHHHHHHHhCC---Chh----hHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHH
Confidence 478999999999 448 99999999999999976543222222458999999988754
No 44
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.06 E-value=0.0063 Score=40.89 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=41.5
Q ss_pred CHHHHHHhC-CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 2 TLNELINAL-PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 2 S~~eLA~~~-~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+..||++.+ ++ ++. .|.|.|+.|...|++......++.....|.+|+.|+.|..
T Consensus 50 ~~~eLa~~l~gi---s~~----tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 50 RFSDLRRXMGGV---SEX----MLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp EHHHHHHHSTTC---CHH----HHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred CHHHHHHHhccC---CHH----HHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence 578999999 69 448 9999999999999997654322221246999999987753
No 45
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.04 E-value=0.0094 Score=39.88 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=42.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee--eccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ--QNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e--~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ .. .+.|+++-|...|++.. .....|.....+.+|+.|+.+...
T Consensus 56 ~t~~eLa~~l~~~---~~----tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~ 113 (154)
T 2qww_A 56 ISVADLTKRLIIT---GS----SAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKR 113 (154)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHH
Confidence 3678999999994 47 89999999999999976 432222212369999999988754
No 46
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.03 E-value=0.0062 Score=38.26 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=40.0
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
|..|||+.++++ .. .+.|++.-|...|++....+ +....|.+|+.|+.+...
T Consensus 32 t~~eLa~~l~i~---~~----tvs~~l~~Le~~Glv~~~~d---~R~~~v~LT~~G~~~~~~ 83 (95)
T 2qvo_A 32 YIQYIASKVNSP---HS----YVWLIIKKFEEAKMVECELE---GRTKIIRLTDKGQKIAQQ 83 (95)
T ss_dssp EHHHHHHHSSSC---HH----HHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHCcC---HH----HHHHHHHHHHHCcCccCCCC---CCeEEEEEChhHHHHHHH
Confidence 678999999994 48 99999999999999932221 111359999999988653
No 47
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.02 E-value=0.009 Score=39.17 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=43.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......|.....+.+|+.|+.+...
T Consensus 49 ~~~~~la~~l~~---~~~----tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 104 (138)
T 1jgs_A 49 ITPVELKKVLSV---DLG----ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp BCHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---ChH----HHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHH
Confidence 478899999999 448 99999999999999976543222222358999999888653
No 48
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.02 E-value=0.0091 Score=40.06 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=41.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++......++.....+.+|+.|+.+...
T Consensus 58 ~t~~ela~~l~i---~~~----tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 58 MMITRLAKLSLM---EQS----RMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp BCHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 478999999999 448 99999999999999976542222212458999999888654
No 49
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.00 E-value=0.007 Score=40.86 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=40.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++-|...|++.......+.....|.+|+.|+.+...
T Consensus 64 ~t~~ela~~l~i---s~~----tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 64 SSASEVSDRTAM---DKV----AVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp CCHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 478999999999 447 89999999999999976542222222468999999988754
No 50
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.00 E-value=0.0062 Score=39.91 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=42.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......|.....|.+|+.|+.+...
T Consensus 44 ~~~~ela~~l~~---s~~----tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 44 IKQDELATFFHV---DKG----TIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp CBHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHH
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHH
Confidence 478999999999 448 99999999999999976542222112358999999888654
No 51
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.99 E-value=0.0074 Score=39.96 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=40.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ .. .+.|+++-|...|++......+|.....|.+|+.|+.+...
T Consensus 52 ~t~~eLa~~l~~s---~~----tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~ 107 (146)
T 3tgn_A 52 LTNSELARRLNVS---QA----AVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEE 107 (146)
T ss_dssp CCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHH
Confidence 5789999999994 48 99999999999999976543222223579999999888654
No 52
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.98 E-value=0.0096 Score=39.28 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++.|...|++.......|.....+.+|+.|+.+...
T Consensus 52 ~~~~ela~~l~~~~---~----tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (142)
T 2bv6_A 52 VNVKKVVTELALDT---G----TVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPE 107 (142)
T ss_dssp EEHHHHHHHTTCCT---T----THHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCCCh---h----hHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHH
Confidence 36789999999954 7 89999999999999976543222223468999999888754
No 53
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.91 E-value=0.0035 Score=46.67 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|+.|||+++|++. . .++|+|+.|...|++..+.. .+.|.+++.--.|
T Consensus 22 lsl~eia~~lgl~k---s----T~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 22 IGLSDLTRLSGMNK---A----TVYRLMSELQEAGFVEQVEG-----ARSYRLGPQVLRL 69 (260)
T ss_dssp EEHHHHHHHHCSCH---H----HHHHHHHHHHHTTSEEECSS-----SSEEEECTTHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEcCC-----CCcEEcCHHHHHH
Confidence 47899999999955 7 89999999999999987642 3789998875544
No 54
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.90 E-value=0.0069 Score=38.61 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
++..+||..+++++ . .+++.+..|...|++.... +.|.+|+-|+.+.+.
T Consensus 21 ~~~t~La~~~~ls~---~----~~~~~l~~L~~~GLI~~~~-------~~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 21 SPKTRIMYGANLSY---A----LTGRYIKMLMDLEIIRQEG-------KQYMLTKKGEELLED 69 (95)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHHHH
T ss_pred CCHHHHHHHhCcCH---H----HHHHHHHHHHHCCCeEEEC-------CeeEEChhHHHHHHH
Confidence 36789999999955 8 9999999999999998764 459999999988754
No 55
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.90 E-value=0.017 Score=38.19 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDI 64 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~ 64 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......+.....+.+|+.|+.+....
T Consensus 55 ~~~~~la~~l~~---~~~----tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 55 LTVKKMGEQLYL---DSG----TLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp EEHHHHHHTTTC---CHH----HHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred CCHHHHHHHHCC---CcC----cHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 367899999999 448 999999999999999765432222234589999999888654
No 56
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.89 E-value=0.0096 Score=40.40 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=42.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 68 ~t~~eLa~~l~~---~~~----~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 68 LTVGQLATLGVM---EQS----TTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp EEHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 367899999999 448 99999999999999976543222222468999999988754
No 57
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.89 E-value=0.0072 Score=37.97 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=38.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|..|||+.+++++ . .++|.|+.|...|++.... +.|.+|+.++.+
T Consensus 44 ~~~~eLa~~l~is~---~----tv~~~L~~L~~~Glv~~~~-------g~y~l~~~g~~~ 89 (96)
T 1y0u_A 44 RSEEEIMQTLSLSK---K----QLDYHLKVLEAGFCIERVG-------ERWVVTDAGKIV 89 (96)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET-------TEEEECTTTCCC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEEC-------CEEEECCCchHH
Confidence 47899999999944 7 8999999999999998653 489999987543
No 58
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.88 E-value=0.01 Score=39.17 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=42.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++-|...|++.......|.....+.+|+.|+.+...
T Consensus 44 ~t~~~la~~l~~---s~~----~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 44 IIQEKIAELIKV---DRT----TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp EEHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHh----HHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 367899999999 448 99999999999999976543222212358999999988753
No 59
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.85 E-value=0.0083 Score=40.40 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=40.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++-|...|++.......|.....+.+|+.|+.+...
T Consensus 63 ~~~~ela~~l~i~~---~----tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 118 (160)
T 3boq_A 63 LSMGKLSGALKVTN---G----NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQ 118 (160)
T ss_dssp EEHHHHHHHCSSCC---S----CHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCCh---h----hHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHH
Confidence 36789999999955 7 89999999999999976543222212358999999988754
No 60
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=95.85 E-value=0.0073 Score=39.79 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=43.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|++.-|...|++.......|.-...+.+|+.|+.+...
T Consensus 54 ~t~~eLa~~l~~---~~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~ 109 (127)
T 2frh_A 54 YYLKDIINHLNY---KQP----QVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 109 (127)
T ss_dssp EEHHHHHHHSSS---HHH----HHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 367899999999 447 99999999999999976543233222458899999988754
No 61
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.84 E-value=0.0093 Score=39.75 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=43.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++-|...|++.......|.....+.+|+.|+.+...
T Consensus 55 ~t~~ela~~l~~---~~~----~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 55 ATAPQLGAALQM---KRQ----YISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp EEHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 367899999999 448 99999999999999976543222222468999999887653
No 62
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.82 E-value=0.0082 Score=39.77 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=34.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
+|..|||+++++++ . .++|+|+.|...|++..... ..+.|.++.-
T Consensus 27 ~s~~ela~~~~i~~---~----~v~~il~~L~~~Glv~~~~g----~~ggy~L~~~ 71 (129)
T 2y75_A 27 TSLKSIAQTNNLSE---H----YLEQLVSPLRNAGLVKSIRG----AYGGYVLGSE 71 (129)
T ss_dssp BCHHHHHHHTTSCH---H----HHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCceEecCC----CCCceEeCCC
Confidence 47899999999955 8 99999999999999875531 1256777653
No 63
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.82 E-value=0.0055 Score=40.49 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=42.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ .. .+.|+++.|...|++.......+.....|.+|+.|+.+...
T Consensus 48 ~~~~~la~~l~~s---~~----tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (145)
T 2a61_A 48 KRPGELSVLLGVA---KS----TVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK 103 (145)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCC---ch----hHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHH
Confidence 4789999999994 48 99999999999999976542221112358999999988753
No 64
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.82 E-value=0.0087 Score=40.01 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=43.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ .. .+.|+++-|...|++.......|.....|.+|+.|+.+...
T Consensus 52 ~t~~ela~~l~~s---~~----tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 52 LKVSEIAERMEVK---PS----AVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp EEHHHHHHHHTSC---HH----HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 3678999999994 48 99999999999999976543222222468999999888754
No 65
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.79 E-value=0.0067 Score=40.24 Aligned_cols=56 Identities=7% Similarity=0.119 Sum_probs=41.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ ++. .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 51 ~t~~eLa~~l~~---~~~----tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (140)
T 3hsr_A 51 LNIKKLGERVFL---DSG----TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp EEHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHH
T ss_pred cCHHHHHHHHCC---Chh----hHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHH
Confidence 367899999999 448 99999999999999976543222212468999999988754
No 66
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=95.78 E-value=0.016 Score=40.66 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++-|...|++.......|.-...+.+|+.|+.+...
T Consensus 58 ~t~~eLa~~l~i---s~~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 113 (189)
T 3nqo_A 58 TTLNNIARKMGT---SKQ----NINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVT 113 (189)
T ss_dssp CCHHHHHHHHTS---CHH----HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 578999999999 448 89999999999999976543233222468999999988764
No 67
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.76 E-value=0.0099 Score=40.16 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++-|...|++.......+.....|.+|+.|+.+...
T Consensus 67 ~t~~ela~~l~i---s~~----tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 67 LPIGTLGIFAVV---EQS----TLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp EEHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---Chh----HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 367899999999 448 89999999999999976542222222458999999888654
No 68
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.75 E-value=0.0078 Score=40.24 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=39.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|++.-|...|++.......|.-...+.+|+.|+.+...
T Consensus 55 ~t~~eLa~~l~i---~~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 110 (150)
T 3fm5_A 55 VNQRGVAATMGL---DPS----QIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDD 110 (150)
T ss_dssp CCSHHHHHHHTC---CHH----HHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHh----HHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHH
Confidence 478899999999 448 99999999999999976543222112358999999988754
No 69
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.73 E-value=0.0064 Score=44.68 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=40.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+|+.|||+++|++. . .++|+|+.|...|++..... .++|.+++....|.
T Consensus 22 ~s~~ela~~~gl~~---s----tv~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 22 LSLAAIAQLVGLPR---S----TVQRIINALEEEFLVEALGP-----AGGFRLGPALGQLI 70 (241)
T ss_dssp EEHHHHHHHTTSCH---H----HHHHHHHHHHTTTSEEECGG-----GCEEEECSHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHHHH
Confidence 37899999999944 7 89999999999999987642 37899998765554
No 70
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.72 E-value=0.0072 Score=41.55 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=41.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 69 ~t~~eLa~~l~i---~~~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 124 (166)
T 3deu_A 69 QSQIQLAKAIGI---EQP----SLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAE 124 (166)
T ss_dssp EEHHHHHHHHTS---CHH----HHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHH
T ss_pred CCHHHHHHHHCC---CHh----hHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHH
Confidence 367899999999 448 99999999999999976543222212468999999988754
No 71
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.62 E-value=0.026 Score=37.65 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=42.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDI 64 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~ 64 (128)
+|..|||+.+++ +.. .+.|+++-|...|++......++.....+.+|+.|+.+....
T Consensus 62 ~t~~ela~~l~~---s~~----tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 62 RSVSEIGERLYL---DSA----TLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp EEHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred cCHHHHHHHhCC---Ccc----cHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 367899999999 447 899999999999999765422221123689999999888654
No 72
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.61 E-value=0.01 Score=40.16 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ +. .+.|++.-|...|++......+|.-...+.+|+.|+.+...
T Consensus 65 ~t~~eLa~~l~~~---~~----tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 65 INQESLSDYLKID---KG----TTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 3678999999994 48 99999999999999976543222212368999999988754
No 73
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.60 E-value=0.011 Score=43.81 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=42.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+|..|||++++++ .. .+.|+++.|...|++..... .+.|.+|+.++.+..
T Consensus 167 ~s~~eLA~~lgls---ks----Tv~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 167 TGITELAKMLDKS---EK----TLINKIAELKKFGILTQKGK-----DRKVELNELGLNVIK 216 (244)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHHH
Confidence 4789999999994 48 89999999999999987642 467999999988853
No 74
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.57 E-value=0.012 Score=43.22 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=38.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|+.|||++++++. . .++|+|+.|...|++.... .+.|.+++....|
T Consensus 24 ~~~~ela~~~gl~~---s----tv~r~l~~L~~~G~v~~~~------~~~Y~lg~~~~~l 70 (249)
T 1mkm_A 24 VSVSEIAEKFNMSV---S----NAYKYMVVLEEKGFVLRKK------DKRYVPGYKLIEY 70 (249)
T ss_dssp BCHHHHHHHTTCCH---H----HHHHHHHHHHHTTSEEECT------TSCEEECTHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCcEEECC------CCcEEECHHHHHH
Confidence 47899999999954 7 8999999999999998663 4789998865433
No 75
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.56 E-value=0.012 Score=40.40 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......|.....+.+|+.|+.+...
T Consensus 60 ~t~~eLa~~l~i---s~~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 60 INLATLATLLGV---QPS----ATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp EEHHHHHHHHTS---CHH----HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHhCC---CHH----HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 367899999999 448 99999999999999976543222222458999999988754
No 76
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.51 E-value=0.0096 Score=39.07 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=42.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......|.....|.+|+.|+.+...
T Consensus 51 ~t~~ela~~l~~---s~~----~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (142)
T 2fbi_A 51 MESYQLANQACI---LRP----SMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVS 106 (142)
T ss_dssp EEHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHh----HHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHH
Confidence 367899999999 447 99999999999999976542222112358999999988754
No 77
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.48 E-value=0.016 Score=38.36 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=40.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+|..|||++++++ .. .+.|+++.|...|++.... +.|.+|+.++.+..
T Consensus 32 ~s~~ela~~l~is---~~----tv~~~l~~Le~~Gli~r~~-------~~~~Lt~~g~~~~~ 79 (139)
T 2x4h_A 32 AKINRIAKDLKIA---PS----SVFEEVSHLEEKGLVKKKE-------DGVWITNNGTRSIN 79 (139)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHHH
T ss_pred cCHHHHHHHhCCC---hH----HHHHHHHHHHHCCCEEecC-------CeEEEChhHHHHHH
Confidence 4789999999994 47 8999999999999997653 56999999987754
No 78
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=95.47 E-value=0.0091 Score=40.79 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 63 ~t~~eLa~~l~~~~---~----tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (168)
T 3u2r_A 63 MATLQIADRLISRA---P----DITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKD 118 (168)
T ss_dssp EEHHHHHHHC---C---T----HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCCCh---h----hHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHH
Confidence 36889999999955 7 89999999999999976543222111358999999988754
No 79
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.47 E-value=0.021 Score=42.23 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=40.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||+++|++. . .++|+|+.|...|++.... +.|.+++....|...
T Consensus 30 ~~~~eia~~~gl~~---s----tv~r~l~~L~~~G~v~~~~-------~~Y~Lg~~~~~l~~~ 78 (257)
T 2g7u_A 30 PTLAELATEAGLSR---P----AVRRILLTLQKLGYVAGSG-------GRWSLTPRVLSIGQH 78 (257)
T ss_dssp CBHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET-------TEEEECGGGHHHHTT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEeCC-------CEEEEcHHHHHHHHH
Confidence 47899999999954 7 8999999999999998652 689999987666543
No 80
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.44 E-value=0.012 Score=43.68 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|+.|||+++|++. . .++|+|+.|...|++.... .+.|.+++..-.|
T Consensus 39 ~~~~eia~~~gl~k---s----tv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~~~l 85 (260)
T 2o0y_A 39 RSLKELVEGTKLPK---T----TVVRLVATMCARSVLTSRA------DGSYSLGPEMLRW 85 (260)
T ss_dssp BCHHHHHHHHCCCH---H----HHHHHHHHHHHTTSEEECT------TSCEEECHHHHHH
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEECC------CCeEEecHHHHHH
Confidence 47899999999954 7 8999999999999998764 2489998875444
No 81
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.42 E-value=0.019 Score=38.34 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=40.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee--ccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ--NFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~--~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++-|...|++... ...+|.-...+.+|+.|+.+...
T Consensus 52 ~t~~eLa~~l~~~~---~----~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~ 109 (151)
T 3kp7_A 52 LTVGQITEKQGVNK---A----AVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKE 109 (151)
T ss_dssp BCHHHHHHHHCSCS---S----HHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHH
T ss_pred cCHHHHHHHHCCCH---H----HHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHH
Confidence 47899999999955 7 899999999999999852 12122112468999999988754
No 82
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=95.35 E-value=0.023 Score=36.54 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=42.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
++..|||+.+++ +.. .|.|++.-|...|++..... +++ .++..+|+.|+.+..
T Consensus 37 ~s~~eLa~~l~l---~~s----tLsR~l~rLe~~GLV~r~~~-~D~-R~~v~LT~~G~~~l~ 89 (96)
T 2obp_A 37 WSLPKIAKRAQL---PMS----VLRRVLTQLQAAGLADVSVE-ADG-RGHASLTQEGAALAA 89 (96)
T ss_dssp CBHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEEC-TTS-CEEEEECHHHHHHHH
T ss_pred cCHHHHHHHhCC---chh----hHHHHHHHHHHCCCEEeecC-CCC-ceeEEECHHHHHHHH
Confidence 368899999999 557 99999999999999986543 332 456899999988764
No 83
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.32 E-value=0.0068 Score=37.96 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=41.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhh-HHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQY-VYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~-L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ .. . +.|+++.|...|++.... .+.....+.+|+.|+.+...
T Consensus 31 ~t~~eLa~~l~is---~~----t~vs~~l~~Le~~Glv~~~~--~drR~~~~~LT~~G~~~~~~ 85 (95)
T 2pg4_A 31 PSLAEIVKASGVS---EK----TFFMGLKDRLIRAGLVKEET--LSYRVKTLKLTEKGRRLAEC 85 (95)
T ss_dssp CCHHHHHHHHCCC---HH----HHHTTHHHHHHHTTSEEEEE--EETTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCC---ch----HHHHHHHHHHHHCCCeecCC--CCCCeEEEEECHhHHHHHHH
Confidence 4789999999994 47 8 999999999999998332 11112358999999888643
No 84
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=95.22 E-value=0.014 Score=39.70 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=34.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
|..|||+++++++ . .|.+||+.|...|++.... | .+.|.|+.-
T Consensus 25 s~~~IA~~~~i~~---~----~l~kIl~~L~~aGlv~s~r----G-~GGy~Lar~ 67 (145)
T 1xd7_A 25 SSEIIADSVNTNP---V----VVRRMISLLKKADILTSRA----G-VPGASLKKD 67 (145)
T ss_dssp CHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEECCS----S-SSSCEESSC
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHCCceEeec----C-CCCceecCC
Confidence 5789999999966 8 9999999999999997654 2 345666543
No 85
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.21 E-value=0.015 Score=39.61 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=34.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
+|..|||+.+++++ . .|+++|+.|...|++..... ..|.|.++.-
T Consensus 29 ~s~~~IA~~~~i~~---~----~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~ 73 (143)
T 3t8r_A 29 ISLKSIAEENNLSD---L----YLEQLVGPLRNAGLIRSVRG----AKGGYQLRVP 73 (143)
T ss_dssp EEHHHHHHHTTCCH---H----HHHHHHHHHHHTTSEEECSS----SSSEEEESSC
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCEEEecCC----CCCCeeecCC
Confidence 36889999999965 8 99999999999999875541 1345776543
No 86
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.20 E-value=0.036 Score=37.55 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=42.9
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+..|||..+++ +.. .+.|++.-|...|++......+|.-...+.+|+.|+.+...
T Consensus 48 ~~~eLa~~l~~---~~~----tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~ 102 (151)
T 4aik_A 48 SQIQLAKAIGI---EQP----SLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQ 102 (151)
T ss_dssp CHHHHHHHHTS---CHH----HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHH
T ss_pred cHHHHHHHHCc---CHH----HHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHH
Confidence 56899999999 448 99999999999999976543333212358999999988754
No 87
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.20 E-value=0.025 Score=35.36 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=41.6
Q ss_pred CCHHHH----HHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNEL----INALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eL----A~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|| |+.+++ +.. .+.|+++.|...|++...... ....|.+|+.|+.+...
T Consensus 23 ~~~~el~~~la~~l~i---s~~----tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~~~ 79 (99)
T 1tbx_A 23 IATYDLYKKVNAEFPM---STA----TFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFAIS 79 (99)
T ss_dssp CBHHHHHHHHHTTSCC---CHH----HHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCC---CHH----HHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHHHH
Confidence 367788 899999 448 999999999999999764321 13579999999988754
No 88
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=95.19 E-value=0.015 Score=39.22 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||..+++ +.. .+.|++.-|...|++......+|.-.....+|+.|+.+.+.
T Consensus 52 ~t~~eLa~~l~~---~~~----tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 107 (147)
T 4b8x_A 52 LPMSKIGERLMV---HPT----SVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEA 107 (147)
T ss_dssp EEHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHH
Confidence 367899999999 448 99999999999999976653333212358999999988753
No 89
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.19 E-value=0.016 Score=40.41 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATN 55 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~ 55 (128)
+|..|||+.+++++ . .|+++|+.|...|++..... ..|.|.|+.
T Consensus 45 ~s~~eIA~~~~i~~---~----~l~kil~~L~~aGlv~s~rG----~~GGy~Lar 88 (159)
T 3lwf_A 45 ISLRSIAQDKNLSE---H----YLEQLIGPLRNAGIVKSIRG----AHGGYVLNG 88 (159)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEECS----TTCEEEECS
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCeEEEecC----CCCceEecC
Confidence 47899999999965 8 99999999999999976542 134577653
No 90
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.18 E-value=0.0097 Score=39.86 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=40.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.++++ +. .+.|+++-|...|++......+|.-...+.+|+.|+.+...
T Consensus 56 ~~~~eLa~~l~~~---~~----~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 111 (149)
T 4hbl_A 56 QTLNSIGRHLDLS---SN----TLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEA 111 (149)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHH
Confidence 3678999999994 48 99999999999999976543222212469999999988754
No 91
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.12 E-value=0.027 Score=35.92 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|..|||+.+++++ . .+.|.|+.|...|++..... +....|.+|+-+...
T Consensus 35 ~~~~ela~~l~is~---~----tv~~~l~~L~~~gli~~~~~---gr~~~y~l~~~~~~~ 84 (114)
T 2oqg_A 35 QSASSLATRLPVSR---Q----AIAKHLNALQACGLVESVKV---GREIRYRALGAELNK 84 (114)
T ss_dssp BCHHHHHHHSSSCH---H----HHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeeEEec---CCEEEEEechHHHHH
Confidence 47899999999944 7 89999999999999976542 112459999987544
No 92
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=95.10 E-value=0.018 Score=38.91 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=38.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ ++. .+.|++.-|...|++....+ +|.-.....+|+.|+.+...
T Consensus 53 ~t~~eLa~~l~~---~~~----tvsr~v~~Le~~glVr~~~~-~DrR~~~v~LT~~G~~~~~~ 107 (148)
T 4fx0_A 53 LTMSELAARIGV---ERT----TLTRNLEVMRRDGLVRVMAG-ADARCKRIELTAKGRAALQK 107 (148)
T ss_dssp -CHHHHHHHHTC---CHH----HHHHHHHHHHHTTSBC------------CCBCHHHHHHHHH
T ss_pred cCHHHHHHHHCC---Chh----hHHHHHHHHHHCCCEEeeCC-CCCCeeEEEECHHHHHHHHH
Confidence 478999999999 448 99999999999999854332 22212368999999988654
No 93
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=95.08 E-value=0.013 Score=40.61 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=41.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++++ . .+.|+++-|...|++.......|.....+.+|+.|+.+...
T Consensus 87 ~t~~eLa~~l~is~---~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 142 (181)
T 2fbk_A 87 LRPTELSALAAISG---P----STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTH 142 (181)
T ss_dssp BCHHHHHHHCSCCS---G----GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHH
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 47899999999955 7 88999999999999976542222112368999999988754
No 94
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.07 E-value=0.017 Score=39.47 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=34.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
+|..|||+.+++++ . .|+++|+.|...|++..... .|.|.++.-
T Consensus 31 ~~~~~iA~~~~i~~---~----~l~kil~~L~~~Glv~s~rG-----~GGy~L~~~ 74 (149)
T 1ylf_A 31 CTSDYMAESVNTNP---V----VIRKIMSYLKQAGFVYVNRG-----PGGAGLLKD 74 (149)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCcEEEccC-----CCceEeCCC
Confidence 47899999999965 8 99999999999999875541 345766553
No 95
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.92 E-value=0.016 Score=38.37 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=42.0
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
|..|||..+++ ++. .+.|+++-|...|++.......|.-...+.+|+.|+.+...
T Consensus 52 ~~~~la~~l~~---~~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 52 SMVYLANRYFV---TQS----AITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp EHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHCC---Chh----HHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHH
Confidence 56899999999 448 99999999999999976543221111359999999988754
No 96
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.87 E-value=0.024 Score=34.47 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCHHHHHHhC-----CCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINAL-----PFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~-----~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|+.||++.+ ++ ... .++|.|..|...|++....
T Consensus 34 ~s~~el~~~l~~~~~~i---s~~----TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEI---GLA----TVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp BCHHHHHHHHHHTTCCC---CHH----HHHHHHHHHHHHTSEEEEE
T ss_pred CCHHHHHHHHHHhCCCC---CHh----hHHHHHHHHHHCCCeEEEe
Confidence 4789999999 66 447 8999999999999998664
No 97
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.86 E-value=0.023 Score=39.56 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=34.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
+|..|||+++++++ . .|.++|+.|...|++..... ..|.|.|+.-
T Consensus 29 ~s~~~IA~~~~is~---~----~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~ 73 (162)
T 3k69_A 29 VASRELAQSLHLNP---V----MIRNILSVLHKHGYLTGTVG----KNGGYQLDLA 73 (162)
T ss_dssp BCHHHHHHHHTSCG---G----GTHHHHHHHHHTTSSEEECS----TTCEEECCSC
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEeecC----CCCCeEecCC
Confidence 47899999999966 8 99999999999999865431 1245766543
No 98
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.84 E-value=0.021 Score=35.67 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=39.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+|..|||+.++++ .. .++|+++.|...|++...... ++....+.+|+.++.+.
T Consensus 35 ~s~~ela~~l~is---~~----tv~~~l~~L~~~glv~~~~~~-~~r~~~~~~t~~g~~~~ 87 (109)
T 1sfx_A 35 MRVSEIARELDLS---AR----FVRDRLKVLLKRGFVRREIVE-KGWVGYIYSAEKPEKVL 87 (109)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEEEE-SSSEEEEEEECCHHHHH
T ss_pred CCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEEEEeec-CCceEEEEecCcHHHHH
Confidence 4789999999994 48 999999999999999765421 11124567777776654
No 99
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=94.83 E-value=0.015 Score=43.28 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=37.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|+.|||+++|++. . .++|+|+.|...|++... ++.|.+++.-..|
T Consensus 37 ~~~~eia~~~gl~~---s----tv~r~l~tL~~~G~v~~~-------~~~Y~Lg~~~~~l 82 (265)
T 2ia2_A 37 RTLSDVARATDLTR---A----TARRFLLTLVELGYVATD-------GSAFWLTPRVLEL 82 (265)
T ss_dssp EEHHHHHHHHTCCH---H----HHHHHHHHHHHHTSEEES-------SSEEEECGGGGGT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEec-------CCEEEEcHHHHHH
Confidence 36899999999954 7 899999999999999764 2689998865444
No 100
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.75 E-value=0.035 Score=37.46 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=41.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+|..+||+.+++ +.. .+.|.++.|...|++.... .+.+.+|+.|+.+..
T Consensus 55 ~~~~~la~~l~v---s~~----tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~~ 103 (155)
T 2h09_A 55 ARQVDMAARLGV---SQP----TVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLAQ 103 (155)
T ss_dssp CCHHHHHHHHTS---CHH----HHHHHHHHHHHTTCEEEET------TTEEEECHHHHHHHH
T ss_pred cCHHHHHHHhCc---CHH----HHHHHHHHHHHCCCEEEec------CCceEEChhHHHHHH
Confidence 478899999999 447 8999999999999987654 356899999987764
No 101
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=94.71 E-value=0.065 Score=37.14 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred CCHHHHHHhCC-CCCCCchhhhhhHHHHHHHHHhcCcceeeccCCC----C-cccceechHhhhhhhcCCCCcHHHHHHH
Q 045905 1 MTLNELINALP-FHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQN----D-QERSYVATNASKLLLKDITLTVRSFLQA 74 (128)
Q Consensus 1 ~S~~eLA~~~~-~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~----~-~~~~y~~T~~s~~L~~~~~~s~~~~~~~ 74 (128)
+|+.||+..++ + ... .|+|-|..|+..|++......++ | -...|.+|+.|+.+...-
T Consensus 46 ~ta~eL~~~l~~l---S~a----TVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y---------- 108 (151)
T 3u1d_A 46 LSVEELLYRNPDE---TEA----NLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAV---------- 108 (151)
T ss_dssp BCHHHHHHHCTTS---CHH----HHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHT----------
T ss_pred CCHHHHHHhcCCC---CHH----HHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHh----------
Confidence 37899999988 7 447 89999999999999986543211 1 124799999998775321
Q ss_pred hcChhhHHHHHhHHHhhh
Q 045905 75 VLDPILTTPCQHVTTWFQ 92 (128)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~ 92 (128)
..-....+|..|.+.+.
T Consensus 109 -~~la~~~alr~l~~~v~ 125 (151)
T 3u1d_A 109 -SMYEEAAVWRSVYEQME 125 (151)
T ss_dssp -TCSTHHHHTHHHHHHSC
T ss_pred -HHHhHHHHHHHHHHHhh
Confidence 01122367888888873
No 102
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=94.70 E-value=0.053 Score=36.06 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=38.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCC-C-cccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQN-D-QERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~-~-~~~~y~~T~~s~~L~ 61 (128)
.|..+||+++++ +.. .+.|+++.|...|++......++ | ....|.++|+-.-|.
T Consensus 52 ps~~~LA~~l~~---s~~----~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL~ 107 (128)
T 2vn2_A 52 PTPAELAERMTV---SAA----ECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKLV 107 (128)
T ss_dssp CCHHHHHHTSSS---CHH----HHHHHHHHHHHTTSSEECC----------CEECHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHH----HHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHHH
Confidence 478999999999 448 89999999999999976543222 2 124799998876663
No 103
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.51 E-value=0.04 Score=39.72 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=42.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
++..|||+.+++ +++ .+.|+++-|...|++.... .+.+.+|+.|+.+...
T Consensus 21 ~~~~~lA~~l~v---s~~----tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~~~ 70 (214)
T 3hrs_A 21 ITNKEIAQLMQV---SPP----AVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLVSD 70 (214)
T ss_dssp CCHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---Chh----HHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHHHH
Confidence 478999999999 448 9999999999999998765 3679999999887654
No 104
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.49 E-value=0.046 Score=34.44 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
+|+.|||+.+|+++ . .+.+.|+.|...|++..... |....|.+|+-
T Consensus 37 ~~~~ela~~l~is~---~----tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~ 82 (102)
T 3pqk_A 37 FSVGELEQQIGIGQ---P----TLSQQLGVLRESGIVETRRN---IKQIFYRLTEA 82 (102)
T ss_dssp BCHHHHHHHHTCCT---T----HHHHHHHHHHHTTSEEEECS---SSCCEEEECSS
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEEEEe---CCEEEEEECcH
Confidence 47899999999955 7 89999999999999976542 11356888875
No 105
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.29 E-value=0.039 Score=39.40 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=41.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ +.. .+.|+++.|...|++.......|.-...+.+|+.|+.+...
T Consensus 63 ~t~~eLa~~l~i---~~s----tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (207)
T 2fxa_A 63 ASISEIAKFGVM---HVS----TAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWS 118 (207)
T ss_dssp EEHHHHHHHTTC---CHH----HHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHH
Confidence 367899999999 448 99999999999999976543222112368999999988643
No 106
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=94.22 E-value=0.064 Score=36.26 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=40.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCC-CC-cccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQ-ND-QERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~-~~-~~~~y~~T~~s~~L 60 (128)
.|..+||+++++ ++. .+.|++.-|...|++.-....+ +| ....|.+||+=.-|
T Consensus 52 ps~~~LA~~~~~---s~~----~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL 106 (135)
T 2v79_A 52 PTPNQLQEGMSI---SVE----ECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKL 106 (135)
T ss_dssp CCHHHHHTTSSS---CHH----HHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHCc---CHH----HHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHH
Confidence 378999999999 448 8999999999999997643212 12 12579999986555
No 107
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.94 E-value=0.042 Score=33.94 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=37.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
+|..|||+.++++ .. .+.|.|+.|...|++..... +....|.+|+-+
T Consensus 39 ~s~~ela~~l~is---~~----tvs~~l~~L~~~glv~~~~~---~r~~~y~l~~~~ 85 (99)
T 3cuo_A 39 TSAGELTRITGLS---AS----ATSQHLARMRDEGLIDSQRD---AQRILYSIKNEA 85 (99)
T ss_dssp EEHHHHHHHHCCC---HH----HHHHHHHHHHHTTSEEEEEC---SSCEEEEECCHH
T ss_pred cCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEEec---CCEEEEEEChHH
Confidence 3678999999994 47 89999999999999976542 113468888876
No 108
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=93.73 E-value=0.063 Score=38.86 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=42.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..++|+++++ .++ .+.|.++.|-..|+|...... ....+.+|+.|+.+...
T Consensus 28 ~s~s~aA~~L~i---sq~----avSr~I~~LE~~~L~~R~~~~---R~~~v~LT~~G~~l~~~ 80 (230)
T 3cta_A 28 LTSSKLADMLGI---SQQ----SASRIIIDLEKNGYITRTVTK---RGQILNITEKGLDVLYT 80 (230)
T ss_dssp CCHHHHHHHHTS---CHH----HHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEEEcC---CeEEEEECHHHHHHHHH
Confidence 468999999999 448 999999999999999876310 12579999999988753
No 109
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=93.51 E-value=0.067 Score=32.91 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=29.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|+.|||+.+++++ . .++|.|..|...|++...
T Consensus 17 vsv~eLa~~l~VS~---~----TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 17 MEAAQISQTLNTPQ---P----MINAMLQQLESMGKAVRI 49 (78)
T ss_dssp BCHHHHHHHTTCCH---H----HHHHHHHHHHHHTSEEEE
T ss_pred CcHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEe
Confidence 57899999999944 8 999999999999998765
No 110
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=93.51 E-value=0.055 Score=33.74 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
+|..|||+.+|+++ . .+.|.|+.|...|++..... |....|.+|+-.
T Consensus 37 ~~~~ela~~l~is~---~----tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~~ 83 (98)
T 3jth_A 37 LSVGELCAKLQLSQ---S----ALSQHLAWLRRDGLVTTRKE---AQTVYYTLKSEE 83 (98)
T ss_dssp EEHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEECC---TTCCEEEECCHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEEEEe---CCEEEEEECHHH
Confidence 36889999999944 7 89999999999999976542 113468888754
No 111
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.50 E-value=0.097 Score=31.68 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|..|||+.+|+++ . .++|.|+.|...|++...
T Consensus 15 ~s~~eLa~~lgvs~---~----tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 15 GKTAEIAEALAVTD---Y----QARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEe
Confidence 57899999999944 7 899999999999999743
No 112
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=93.26 E-value=0.15 Score=32.58 Aligned_cols=52 Identities=8% Similarity=0.197 Sum_probs=38.7
Q ss_pred HHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 4 NELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 4 ~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
.+|.+..+..+ ++. .|+.+|+-|...|++.... ++ ...+|.+|+.|+.....
T Consensus 32 ~ei~~~~~~~i-s~G----tlYp~L~rLe~~GlI~~~~--~~-~rk~Y~iT~~Gr~~l~~ 83 (99)
T 2co5_A 32 SEILKRFDIDI-SDG----VLYPLIDSLIDDKILREEE--AP-DGKVLFLTEKGMKEFEE 83 (99)
T ss_dssp HHHHHHHCCBC-CHH----HHHHHHHHHHHTTSEEEEC--CT-TSCEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCC-CCC----cHHHHHHHHHHCCCEEEee--CC-CcEEEEECHHHHHHHHH
Confidence 56777766533 557 8999999999999997654 11 13579999999977654
No 113
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=92.95 E-value=0.14 Score=32.74 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=40.7
Q ss_pred CCHHHHHH-hCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELIN-ALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~-~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||+ .+++ +.. .|.|-++.|...|++..++ ++ +.+|+.|+-+...
T Consensus 31 ~t~~~Lae~~l~~---drs----tvsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l~~ 80 (95)
T 1bja_A 31 ITAAEVREVHPDL---GNA----VVNSNIGVLIKKGLVEKSG------DG-LIITGEAQDIISN 80 (95)
T ss_dssp BCHHHHHHTCTTS---CHH----HHHHHHHHHHTTTSEEEET------TE-EEECHHHHHHHHH
T ss_pred CCHHHHHHHHhcc---cHH----HHHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHHHH
Confidence 47899999 8888 568 9999999999999998222 34 9999999988754
No 114
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=92.88 E-value=0.07 Score=33.59 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=29.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|+.|||+.+++++ . .++|.|..|...|++...
T Consensus 17 vsv~eLA~~l~VS~---~----TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 17 MEAKQLSARLQTPQ---P----LIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp EEHHHHHHHTTCCH---H----HHHHHHHHHHTTCCSEEE
T ss_pred CcHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEE
Confidence 47899999999944 8 999999999999998765
No 115
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=92.74 E-value=0.1 Score=37.74 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=40.9
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
..|||+++++ +.. .+.|+++-|...|++.... .+.+.+|+.|+.+...
T Consensus 27 ~~~La~~l~v---s~~----tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~~~ 74 (230)
T 1fx7_A 27 RARIAERLDQ---SGP----TVSQTVSRMERDGLLRVAG------DRHLELTEKGRALAIA 74 (230)
T ss_dssp HHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHHHH
T ss_pred HHHHHHHHCc---CHH----HHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHHHH
Confidence 3899999999 448 8999999999999998765 3679999999988653
No 116
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.25 E-value=0.12 Score=32.81 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=36.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
+|+.|||+.+++++ . .+.|.|+.|...|++..... |....|.+|+-.
T Consensus 40 ~~~~ela~~l~is~---s----tvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 86 (106)
T 1r1u_A 40 ASVGHISHQLNLSQ---S----NVSHQLKLLKSVHLVKAKRQ---GQSMIYSLDDIH 86 (106)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEEEE---TTEEEEEESSHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 47899999999944 7 89999999999999976542 112368887654
No 117
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=92.21 E-value=0.1 Score=40.32 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=38.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+|..|||.++++++ . .++++|+.|+..|++... ++ |.+|+.++.+.
T Consensus 56 ~t~~eLa~~~g~~~---~----~v~~~L~~l~~~gll~~~-------~~-~~lt~~~~~~l 101 (373)
T 2qm3_A 56 DDIWRIVDLSEEPL---P----LVVAILESLNELGYVTFE-------DG-VKLTEKGEELV 101 (373)
T ss_dssp SCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEECS-------SS-SEECHHHHHHH
T ss_pred CCHHHHHHHhCCCh---H----HHHHHHHHHhhCCcEEEC-------CC-EEECHHHHHHH
Confidence 47899999999944 7 999999999999999653 24 99999877554
No 118
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=91.98 E-value=0.081 Score=33.87 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=35.6
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
|+.|||+.+|+++ . .+.|.|+.|...|++..... |....|.+|+-+
T Consensus 40 s~~eLa~~lgis~---s----tvs~~L~~L~~~GlV~~~~~---gr~~~y~l~~~~ 85 (108)
T 2kko_A 40 AVEAIATATGMNL---T----TASANLQALKSGGLVEARRE---GTRQYYRIAGED 85 (108)
T ss_dssp EHHHHHHHHTCCH---H----HHHHHHHHHHHHTSEEEEEE---TTEEEEEESCHH
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 6789999999944 7 89999999999999975542 112468887654
No 119
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=91.98 E-value=0.11 Score=33.75 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=37.3
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASK 58 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~ 58 (128)
|+.|||+.+|+++ . .+.+.|+.|...|++..... |....|.+|+-+.
T Consensus 33 ~~~eLa~~l~is~---~----tvs~hL~~L~~~GlV~~~~~---gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 33 TVSELAKPFDMAL---P----SFMKHIHFLEDSGWIRTHKQ---GRVRTCAIEKEPF 79 (118)
T ss_dssp EHHHHHTTCCSCH---H----HHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred CHHHHHHHhCcCH---H----HHHHHHHHHHHCCCeEEEec---CCEEEEEECHHHH
Confidence 6789999999944 7 89999999999999976542 1135799998664
No 120
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.95 E-value=0.14 Score=33.50 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=35.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
+|..|||+.+++++ . .+.|+++.|...|++......++ .+.|.++..+
T Consensus 42 ~t~~ela~~l~~~~---s----tvs~~l~~L~~~G~v~r~~~~~d--~r~~~~~~~~ 89 (152)
T 1ku9_A 42 LTISDIMEELKISK---G----NVSMSLKKLEELGFVRKVWIKGE--RKNYYEAVDG 89 (152)
T ss_dssp EEHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEECCTTC--SSCEEEECCH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEEecCCC--ceEEEeecch
Confidence 36899999999944 7 99999999999999976532111 3456665533
No 121
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.81 E-value=0.12 Score=31.49 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATN 55 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~ 55 (128)
+|+.|||+++|++ .. .+.|.|.-|...|++..... .+++|..+|
T Consensus 32 ~t~~eLA~~Lgvs---~~----tV~~~L~~L~~~G~I~~~g~----~~~~W~i~~ 75 (77)
T 1qgp_A 32 TTAHDLSGKLGTP---KK----EINRVLYSLAKKGKLQKEAG----TPPLWKIAV 75 (77)
T ss_dssp EEHHHHHHHHCCC---HH----HHHHHHHHHHHHTSEEEECS----SSCEEEECC
T ss_pred cCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEecCC----CCCceEecC
Confidence 4789999999994 47 89999999999999865431 135666554
No 122
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=91.79 E-value=0.18 Score=37.30 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=43.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+.+++ ++. .+.|++.-|...|++......+|.-.....+|+.|+.+...
T Consensus 175 ~t~~eLa~~l~i---~~~----tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~ 230 (250)
T 1p4x_A 175 VLLKDLIETIHH---KYP----QTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQ 230 (250)
T ss_dssp EEHHHHHHHSSS---CHH----HHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHH
T ss_pred cCHHHHHHHHCC---Chh----hHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHH
Confidence 367899999999 448 99999999999999976554333212358899999888653
No 123
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=91.72 E-value=0.18 Score=36.43 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
..+||+++++ ++. .+.|+++-|...|++.... ...+.+|+.|+.+...
T Consensus 27 ~~~la~~l~v---s~~----tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~~~ 74 (226)
T 2qq9_A 27 RARIAERLEQ---SGP----TVSQTVARMERDGLVVVAS------DRSLQMTPTGRTLATA 74 (226)
T ss_dssp HHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEECT------TSBEEECHHHHHHHHH
T ss_pred HHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHHHHH
Confidence 4899999999 448 8999999999999998664 3679999999988654
No 124
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=91.59 E-value=0.16 Score=34.72 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=39.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|+.|||+.++++ .. .+.|.|+.|...|++..... |....|.+|+.+...
T Consensus 72 ~t~~eLa~~lgls---~s----tvs~hL~~L~~aGlV~~~~~---Gr~~~y~lt~~~~~~ 121 (151)
T 3f6v_A 72 QTVNNLAAHFPAS---RS----AISQHLRVLTEAGLVTPRKD---GRFRYYRLDPQGLAQ 121 (151)
T ss_dssp EEHHHHHTTSSSC---HH----HHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEEec---CCEEEEEEChHHHHH
Confidence 3688999999994 47 89999999999999976542 113579999977543
No 125
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=91.56 E-value=0.1 Score=34.13 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
+|+.|||+.+|+++ . .+.|.|+.|...|++..... |....|.+|+-+
T Consensus 57 ~s~~eLa~~l~is~---s----tvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 103 (122)
T 1u2w_A 57 LCVCDIANILGVTI---A----NASHHLRTLYKQGVVNFRKE---GKLALYSLGDEH 103 (122)
T ss_dssp EEHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEC-------CCEEEESCHH
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEEEEE---CCEEEEEECHHH
Confidence 36789999999944 7 89999999999999975532 112468888764
No 126
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=91.53 E-value=0.1 Score=34.22 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..|||+++++ +.. .++|.|+.|...|++....
T Consensus 43 ~t~~eLa~~l~~---s~s----TV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 43 IDTDALSKSLKL---DVS----TVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp EEHHHHHHHHTS---CHH----HHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCc---CHH----HHHHHHHHHHHCCCEEeeC
Confidence 478999999999 448 9999999999999997643
No 127
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=91.37 E-value=0.34 Score=31.63 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred CchhhhhhHHHHHHHHHhcCcceeeccC-CCC-cccceechHhhhhhhcC
Q 045905 16 KAQYVAQYVYRFMWILVHSGFFAQQNFG-QND-QERSYVATNASKLLLKD 63 (128)
Q Consensus 16 ~~~~~~~~L~RlLR~L~~~gvf~e~~~~-~~~-~~~~y~~T~~s~~L~~~ 63 (128)
++. .|+++|+-|...|++...... +++ ....|.+|+.|+.....
T Consensus 43 s~g----tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~ 88 (117)
T 4esf_A 43 VEG----TVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELEL 88 (117)
T ss_dssp CHH----HHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHH
T ss_pred Ccc----HHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHH
Confidence 557 899999999999999765321 111 13469999999877543
No 128
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.29 E-value=0.21 Score=30.81 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=37.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
|+.|||+.+|+.+ .. .++|.|..|...|++..... | ...|.+|+.++-.
T Consensus 27 ta~eiA~~Lgit~--~~----aVr~hL~~Le~eGlV~~~~~---g-RP~w~LT~~g~~~ 75 (79)
T 1xmk_A 27 SALNLAKNIGLTK--AR----DINAVLIDMERQGDVYRQGT---T-PPIWHLTDKKRER 75 (79)
T ss_dssp EHHHHHHHHCGGG--HH----HHHHHHHHHHHTTSEEEECS---S-SCEEEECHHHHTT
T ss_pred CHHHHHHHcCCCc--HH----HHHHHHHHHHHCCCEEecCC---C-CCCeEeCHhHHhH
Confidence 6889999999832 12 58999999999999864321 1 3489999998644
No 129
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=90.83 E-value=0.14 Score=33.30 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=35.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
++..|||+.+|+++ . .+.|.|+.|...|++..... |....|.+|+-.
T Consensus 35 ~~~~eLa~~lgis~---s----tvs~~L~~L~~~GlV~~~~~---gr~~~y~l~~~~ 81 (118)
T 2jsc_A 35 CYPGQLAAHLGLTR---S----NVSNHLSCLRGCGLVVATYE---GRQVRYALADSH 81 (118)
T ss_dssp CSTTTHHHHHSSCH---H----HHHHHHHHHTTTTSEEEEEC---SSSEEEEESSHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCceEEEEE---CCEEEEEEChHH
Confidence 36789999999944 7 89999999999999976542 113468888743
No 130
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=90.76 E-value=0.23 Score=30.88 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=33.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
+|+.|||.++|++. . .++|.|.-|...|++..... .+.++.++..+
T Consensus 31 ~sa~eLAk~LgiSk---~----aVr~~L~~Le~eG~I~~~~~----~PP~W~~~~~~ 76 (82)
T 1oyi_A 31 ATAAQLTRQLNMEK---R----EVNKALYDLQRSAMVYSSDD----IPPRWFMTTEA 76 (82)
T ss_dssp EEHHHHHHHSSSCH---H----HHHHHHHHHHHHTSSEECSS----SSCEEESCC--
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEeCCC----CCCcceeccCc
Confidence 47899999999944 7 89999999999999865431 13456665543
No 131
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.65 E-value=0.15 Score=31.57 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..|||+.++++ .. .++|+++.|...|++....
T Consensus 37 ~t~~ela~~l~is---~~----tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 37 ITSEELADIFKLS---KT----TVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCeEeec
Confidence 3678999999994 47 8999999999999998654
No 132
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.63 E-value=0.21 Score=32.01 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCc-ccceechHhhhhhhc
Q 045905 10 LPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQ-ERSYVATNASKLLLK 62 (128)
Q Consensus 10 ~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~-~~~y~~T~~s~~L~~ 62 (128)
+++ ++. .|+++|+-|...|++.......++. ...|.+|+.|+.+..
T Consensus 36 ~~i---~~~----tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~ 82 (108)
T 3l7w_A 36 ASI---KES----TLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLV 82 (108)
T ss_dssp CCC---CHH----HHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHH
T ss_pred hCC---CcC----hHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHH
Confidence 456 457 8999999999999997553211221 236999999987754
No 133
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=90.19 E-value=0.22 Score=39.26 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+|..|||+++++ +.. .+.|++.-|...|++......+|.-.-...+|+.|+.+.+
T Consensus 421 ~~~~~l~~~~~~---~~~----~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~ 475 (487)
T 1hsj_A 421 ISSKEIAKCSEF---KPY----YLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQ 475 (487)
T ss_dssp EEHHHHHHSSCC---CHH----HHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHH
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHH
Confidence 467899999999 558 9999999999999997654333311235889999988764
No 134
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=89.79 E-value=0.45 Score=29.89 Aligned_cols=34 Identities=3% Similarity=-0.032 Sum_probs=28.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
++..|||.++++ +.. .+.|+|+.|...|++....
T Consensus 37 i~qkeLa~~~~l---~~~----tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 37 IWSRDVRYKSNL---PLT----EINKILKNLESKKLIKAVK 70 (91)
T ss_dssp EEHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEEEC
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEec
Confidence 356799999999 447 8999999999999998544
No 135
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=89.43 E-value=0.42 Score=30.98 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=38.5
Q ss_pred CHHHHHHhCC---C-C-CCCc-hhhhhhHHHHHHHHHhcCcceeeccCCCC-cccceechHhhhhhhcC
Q 045905 2 TLNELINALP---F-H-PIKA-QYVAQYVYRFMWILVHSGFFAQQNFGQND-QERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~---~-~-~~~~-~~~~~~L~RlLR~L~~~gvf~e~~~~~~~-~~~~y~~T~~s~~L~~~ 63 (128)
+..||++.+. . . ..++ . .|+++|+-|...|++.......++ ....|.+|+.|+.+...
T Consensus 28 ~gyel~~~l~~~g~~~~~is~~~----tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~ 92 (118)
T 2esh_A 28 HGYELAERLAEFGIEIPGIGHMG----NIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLRE 92 (118)
T ss_dssp CHHHHHHHHHTTCCSSTTCCCCC----CHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcccCCCCcc----hHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHH
Confidence 3456777663 1 1 0156 6 899999999999999755321111 13469999999987644
No 136
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=89.37 E-value=0.42 Score=30.21 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|..|||+.+|++ .. .+++.|+.|...|++...
T Consensus 34 ~s~~eLa~~lgvs---~~----tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 34 MTDEEIANQLNIK---VN----DVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp BCHHHHHHTTTSC---HH----HHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEE
Confidence 4789999999994 47 899999999999999755
No 137
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.36 E-value=0.49 Score=29.11 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=33.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASK 58 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~ 58 (128)
+|+.|||+++|++ .. .+.|.|.-|-..|++..... ..++|..++...
T Consensus 28 ~t~~eLA~~Lgvs---r~----tV~~~L~~Le~~G~I~~~g~----~~~~W~i~~~~~ 74 (81)
T 1qbj_A 28 TTAHDLSGKLGTP---KK----EINRVLYSLAKKGKLQKEAG----TPPLWKIAVSTQ 74 (81)
T ss_dssp BCHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEESS----SSCEEEEC----
T ss_pred cCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEecCC----CCCeeEEeCcHH
Confidence 4889999999994 37 89999999999999865431 135677766653
No 138
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=89.04 E-value=0.23 Score=31.66 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=29.5
Q ss_pred CCHHHHHHhCCCCC-CCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHP-IKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~-~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..||+++++.++ -+.. .+.|+|.-|...|++....
T Consensus 50 ~t~~eL~~~l~~~~~~s~s----TVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 50 ARVDEIYAQIPQELEWSLA----TVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp EEHHHHHHTCCGGGCCCHH----HHHHHHHHHHHTTSCEEEE
T ss_pred CCHHHHHHHHhcccCCCHh----hHHHHHHHHHHCCCEEEEe
Confidence 36889999998631 1457 8999999999999997654
No 139
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=88.97 E-value=0.34 Score=31.69 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=35.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
+++.|||+.+++++ . .+.|.|+.|...|++..... |....|.+|+-.
T Consensus 60 ~s~~ela~~lgis~---s----tvs~~L~~Le~~Glv~~~~~---gr~~~y~l~~~~ 106 (122)
T 1r1t_A 60 LCVGDLAQAIGVSE---S----AVSHQLRSLRNLRLVSYRKQ---GRHVYYQLQDHH 106 (122)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEEEE---TTEEEEEESSHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 37889999999944 7 89999999999999875542 112458887654
No 140
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=88.84 E-value=0.31 Score=31.19 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..|||+.++++ .. .+.|.|+.|...|++....
T Consensus 46 ~s~~ela~~l~is---~s----tvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 46 LPVTDLAEAIGME---QS----AVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCHHHHHHHHSSC---HH----HHHHHHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEEe
Confidence 4789999999994 47 9999999999999886543
No 141
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=88.30 E-value=0.66 Score=31.17 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=33.8
Q ss_pred CCHHHHHHhCCC--CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 1 MTLNELINALPF--HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 1 ~S~~eLA~~~~~--~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
+|+.||.+.+.- +..+.. .+||.|..|+..|++......+ +..+|.++
T Consensus 38 ~sa~ei~~~l~~~~~~is~a----TVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~~ 87 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNMSVA----TVYNNLRVFRESGLVKELTYGD--ASSRFDFV 87 (145)
T ss_dssp CCHHHHHHHHGGGCTTCCHH----HHHHHHHHHHHTTSEEEECCTT--SCCEEEEC
T ss_pred CCHHHHHHHHHHhCCCCChh----hHHHHHHHHHHCCCEEEEeeCC--CceEEECC
Confidence 478899988831 111557 8999999999999998765311 13468754
No 142
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=87.98 E-value=0.31 Score=33.08 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=31.0
Q ss_pred CchhhhhhHHHHHHHHHhcCcceeeccC-CCC-cccceechHhhhhhhc
Q 045905 16 KAQYVAQYVYRFMWILVHSGFFAQQNFG-QND-QERSYVATNASKLLLK 62 (128)
Q Consensus 16 ~~~~~~~~L~RlLR~L~~~gvf~e~~~~-~~~-~~~~y~~T~~s~~L~~ 62 (128)
.+. .|+++|+-|...|++...... +++ ....|.+|+.|+.+..
T Consensus 75 s~g----tLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 119 (145)
T 1xma_A 75 KET----TLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYK 119 (145)
T ss_dssp CHH----HHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHH
T ss_pred Chh----HHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHH
Confidence 457 899999999999999654321 111 1346999999987754
No 143
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=87.74 E-value=0.64 Score=32.24 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=36.0
Q ss_pred CHHHHHHhCCC------CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCC--cccceechHhhhhhh
Q 045905 2 TLNELINALPF------HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQND--QERSYVATNASKLLL 61 (128)
Q Consensus 2 S~~eLA~~~~~------~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~--~~~~y~~T~~s~~L~ 61 (128)
+..||++.+.- +. ... .|++.|+-|...|++......+++ ....|.+|+.|+...
T Consensus 17 ~gyel~~~l~~~~~~~~~~-s~~----~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l 79 (179)
T 1yg2_A 17 TGYDITKEFSASIGYFWKA-SHQ----QVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSAL 79 (179)
T ss_dssp CHHHHHHHHTTGGGGTCCC-CHH----HHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHH
T ss_pred CHHHHHHHHHHHhCCccCC-CcC----cHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHH
Confidence 45677777731 11 457 899999999999999755332221 134799999998554
No 144
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=87.34 E-value=0.67 Score=34.18 Aligned_cols=56 Identities=7% Similarity=0.252 Sum_probs=42.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|||+++++ ++. .+.|++.-|...|++....+.+|.-.-...+|+.|+.+...
T Consensus 51 ~~~~el~~~l~~---~~~----t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~ 106 (250)
T 1p4x_A 51 LPFKKIVSDLCY---KQS----DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAE 106 (250)
T ss_dssp EEHHHHHHHSSS---CGG----GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHH
T ss_pred cCHHHHHHHHCC---CHh----hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHH
Confidence 367899999999 448 89999999999999976543332111257899999987643
No 145
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=86.58 E-value=0.3 Score=31.26 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=39.3
Q ss_pred CCHHHHHHhCCCCC-CCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccc-eechHhhhhhhc
Q 045905 1 MTLNELINALPFHP-IKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERS-YVATNASKLLLK 62 (128)
Q Consensus 1 ~S~~eLA~~~~~~~-~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~-y~~T~~s~~L~~ 62 (128)
+|..|||..++.++ .... .+.|++.-|...|++..... +.... +.+|+.|+.+..
T Consensus 25 ~t~~ela~~l~~~~~~s~~----tv~~~l~~L~~~Glv~r~~~---~rr~~~~~lT~~g~~~~~ 81 (123)
T 1okr_A 25 ASANNIIEEIQMQKDWSPK----TIRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESDIKYK 81 (123)
T ss_dssp EEHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHHHHHH
T ss_pred cCHHHHHHHHhccCCCcHh----hHHHHHHHHHHCCCeEEEec---CCeEEEEEecCHHHHHHH
Confidence 36789999988320 0347 89999999999999976542 11223 579999988764
No 146
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=86.44 E-value=0.58 Score=30.88 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=32.5
Q ss_pred CCHHHHHHhC-----CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceec
Q 045905 1 MTLNELINAL-----PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVA 53 (128)
Q Consensus 1 ~S~~eLA~~~-----~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~ 53 (128)
+|++||.+.+ ++ +.. .+||.|..|+..|++......+ +..+|.+
T Consensus 27 ~sa~ei~~~l~~~~~~i---s~~----TVYR~L~~L~e~Glv~~~~~~~--~~~~y~~ 75 (131)
T 2o03_A 27 RSAQELHDELRRRGENI---GLT----TVYRTLQSMASSGLVDTLHTDT--GESVYRR 75 (131)
T ss_dssp EEHHHHHHHHHHTTCCC---CHH----HHHHHHHHHHTTTSEEEEECTT--SCEEEEE
T ss_pred CCHHHHHHHHHHhCCCC---CHh----hHHHHHHHHHHCCCEEEEEeCC--CceEEEe
Confidence 3678888887 34 557 8999999999999998765321 1346765
No 147
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=86.08 E-value=0.92 Score=29.51 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCcceeecc-CCCC-cccceechHhhhhhhcC
Q 045905 23 YVYRFMWILVHSGFFAQQNF-GQND-QERSYVATNASKLLLKD 63 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~-~~~~-~~~~y~~T~~s~~L~~~ 63 (128)
.|+++|+-|...|++..... .+++ ....|.+|+.|+.....
T Consensus 49 tly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 49 SIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCD 91 (117)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 89999999999999975432 1111 13479999999877654
No 148
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=86.04 E-value=0.75 Score=33.18 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=38.1
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+..+||+++++. ++ .++.+++.|...|++.... +...+|+.|+.+.
T Consensus 32 ~~~~LA~~LgvS---~~----SV~~~lkkL~e~GLV~~~~-------~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 32 GRKQISERLELG---EG----SVRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKEIR 77 (200)
T ss_dssp CHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEC---------CEEECHHHHHHH
T ss_pred cHHHHHHHhCCC---HH----HHHHHHHHHHHCCCEEEeC-------CCeEECHHHHHHH
Confidence 567999999994 48 8999999999999997653 5689999998765
No 149
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=86.04 E-value=0.88 Score=30.15 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCHHHHHHhCCC--CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 1 MTLNELINALPF--HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 1 ~S~~eLA~~~~~--~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
+|+.||.+.+.- +..+.. .+||.|..|+..|++......+ +..+|.++
T Consensus 35 ~sa~ei~~~l~~~~~~is~a----TVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~~ 84 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDVGLA----TVYRVLTQFEAAGLVVRHNFDG--GHAVFELA 84 (136)
T ss_dssp BCHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHHTSEEEECSSS--SSCEEEES
T ss_pred CCHHHHHHHHHhhCCCCCHH----HHHHHHHHHHHCCcEEEEEeCC--CceEEEeC
Confidence 478888888721 111557 8999999999999998765311 13568763
No 150
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=85.89 E-value=0.89 Score=29.43 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=31.0
Q ss_pred CchhhhhhHHHHHHHHHhcCcceeeccC-CCC-cccceechHhhhhhhc
Q 045905 16 KAQYVAQYVYRFMWILVHSGFFAQQNFG-QND-QERSYVATNASKLLLK 62 (128)
Q Consensus 16 ~~~~~~~~L~RlLR~L~~~gvf~e~~~~-~~~-~~~~y~~T~~s~~L~~ 62 (128)
++. .|+++|+-|...|++...... +++ ....|.+|+.|+....
T Consensus 46 ~~g----tly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 46 NEA----TLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp CHH----HHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred Ccc----hHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHH
Confidence 557 899999999999999754321 111 1346999999987754
No 151
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.78 E-value=0.63 Score=28.37 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=29.0
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|+.|||+.+|+. +. .++|-|..|...|++....
T Consensus 26 sv~EIa~~lgvS---~~----TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 26 KTRDIADAAGLS---IY----QVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp EHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEES
T ss_pred CHHHHHHHHCCC---HH----HHHHHHHHHHHCCcEEecC
Confidence 689999999994 37 8999999999999997664
No 152
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=85.05 E-value=0.62 Score=31.09 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=28.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|..|||+++|+++ . .+.|.++.|...|++...
T Consensus 22 ~s~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 22 ATLSELATRAGLSV---S----AVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEE
Confidence 57899999999944 7 899999999999999643
No 153
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=83.97 E-value=0.67 Score=30.06 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=31.4
Q ss_pred CchhhhhhHHHHHHHHHhcCcceeecc-CCCC-cccceechHhhhhhhc
Q 045905 16 KAQYVAQYVYRFMWILVHSGFFAQQNF-GQND-QERSYVATNASKLLLK 62 (128)
Q Consensus 16 ~~~~~~~~L~RlLR~L~~~gvf~e~~~-~~~~-~~~~y~~T~~s~~L~~ 62 (128)
++. .|+++|+-|...|++..... .+++ ....|.+|+.|+....
T Consensus 41 s~g----tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~ 85 (115)
T 4esb_A 41 SEG----SIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLE 85 (115)
T ss_dssp CHH----HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHH
T ss_pred CcC----hHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHH
Confidence 557 89999999999999975432 1112 1246999999987754
No 154
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=83.87 E-value=1.1 Score=29.19 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHHHhCC---CCCCCchhhhhhHHHHHHHHHhcCcceeecc-CCCC-cccceechHhhhhhhcC
Q 045905 4 NELINALP---FHPIKAQYVAQYVYRFMWILVHSGFFAQQNF-GQND-QERSYVATNASKLLLKD 63 (128)
Q Consensus 4 ~eLA~~~~---~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~-~~~~-~~~~y~~T~~s~~L~~~ 63 (128)
-||++.+. .-..++. .|+++|+-|...|++..... .+++ ....|.+|+.|+.....
T Consensus 30 yei~~~l~~~g~~~is~g----tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~ 90 (116)
T 3hhh_A 30 YEITKILNDQGFTEIVEG----TVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELAD 90 (116)
T ss_dssp HHHHHHHHTTSCSSCCHH----HHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcc----HHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 35666552 1111557 89999999999999975432 1112 13469999999877543
No 155
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.82 E-value=0.71 Score=31.27 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|..|||+++|+++ . .+.|.++.|...|++...
T Consensus 25 ~s~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 25 LTNVELSERVALSP---S----PCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEeee
Confidence 57899999999944 7 899999999999998743
No 156
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=83.58 E-value=0.87 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .+.|.++.|...|++..
T Consensus 18 ~~~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 18 YSLDEIAREIRIPK---A----TLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp SCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSSCC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCcEEE
Confidence 47899999999944 7 89999999999999975
No 157
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=83.48 E-value=0.96 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .+.|.++.|...|++..
T Consensus 20 ~s~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 20 LSMRELGRKIKLSP---P----SVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEE
Confidence 57899999999944 7 89999999999999974
No 158
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=83.22 E-value=1.2 Score=30.12 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCHHHHHHhCCC--CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 1 MTLNELINALPF--HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 1 ~S~~eLA~~~~~--~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
+|+.||.+.+.- +..+.. -+||.|..|+..|++......+ +..+|.++
T Consensus 43 ~sa~ei~~~l~~~~~~is~a----TVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~~ 92 (150)
T 2xig_A 43 LSPEEITHSIRQKDKNTSIS----SVYRILNFLEKENFISVLETSK--SGRRYEIA 92 (150)
T ss_dssp BCHHHHHHHHHHHSTTCCHH----HHHHHHHHHHHTTSEEEEEETT--TEEEEEES
T ss_pred CCHHHHHHHHHHhCCCCCHh----hHHHHHHHHHHCCcEEEEEeCC--CceEEEec
Confidence 478888888721 111557 8999999999999998765311 13468764
No 159
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=83.10 E-value=1.2 Score=29.57 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=28.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .+.|.++.|...|++..
T Consensus 24 ~s~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 24 LTYRELADILNTTR---Q----RIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHTTSCH---H----HHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEE
Confidence 57899999999944 7 89999999999999974
No 160
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=82.91 E-value=0.72 Score=30.85 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=28.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .+.|.++.|...|++..
T Consensus 22 ~s~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 22 APLREISKITGLAE---S----TIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHCSCH---H----HHHHHHHHHHHHTSSCC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEE
Confidence 57899999999944 7 89999999999999864
No 161
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=82.51 E-value=0.63 Score=29.07 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=34.4
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
|+.|||+.+|+++ . .+.|.|+.|... ++..... |....|.+|+-+
T Consensus 43 ~~~ela~~l~is~---s----tvs~hL~~L~~~-lv~~~~~---gr~~~y~l~~~~ 87 (99)
T 2zkz_A 43 NVTQIIQILKLPQ---S----TVSQHLCKMRGK-VLKRNRQ---GLEIYYSINNPK 87 (99)
T ss_dssp EHHHHHHHHTCCH---H----HHHHHHHHHBTT-TBEEEEE---TTEEEEECCCHH
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHH-hhhheEe---CcEEEEEEChHH
Confidence 6789999999944 7 899999999999 8865442 113468888754
No 162
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=82.21 E-value=1.7 Score=28.59 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=31.5
Q ss_pred CchhhhhhHHHHHHHHHhcCcceeeccCCCC-cccceechHhhhhhhc
Q 045905 16 KAQYVAQYVYRFMWILVHSGFFAQQNFGQND-QERSYVATNASKLLLK 62 (128)
Q Consensus 16 ~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~-~~~~y~~T~~s~~L~~ 62 (128)
++. .|+++|+-|...|++.......++ ...+|.+|+.|+....
T Consensus 51 s~g----tlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~ 94 (123)
T 3ri2_A 51 EAN----TLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLR 94 (123)
T ss_dssp CHH----HHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHH
T ss_pred Ccc----hHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHH
Confidence 557 899999999999999754321111 1347999999987754
No 163
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=81.93 E-value=1.1 Score=32.01 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=36.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC-CC-CcccceechHhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG-QN-DQERSYVATNASK 58 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~-~~-~~~~~y~~T~~s~ 58 (128)
+|..|||+.++++ .. .+++.|+.|...|++...... .. +...+|.+|+-+.
T Consensus 29 ~s~~eLa~~l~is---~s----tvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 29 YFVSELSRELGVG---QK----AVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp EEHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 3678999999994 48 999999999999999765421 11 1123566666553
No 164
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=81.58 E-value=1.1 Score=30.57 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.+||+.+|+.+ . .|.|+|+.|...|++....
T Consensus 165 ~t~~~lA~~lg~sr---~----tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 165 ITRQEIGRIVGCSR---E----MVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEEecC
Confidence 47789999999944 7 9999999999999997553
No 165
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=81.39 E-value=1.6 Score=29.76 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .+.|+|+.|...|++....
T Consensus 140 ~t~~~lA~~lg~sr---~----tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 140 VSHEEIADATASIR---E----SVSKVLADLRREGLIATAY 173 (195)
T ss_dssp CCHHHHHHTTTSCH---H----HHHHHHHHHHHHTSEEEET
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEEecC
Confidence 47789999999944 7 9999999999999997553
No 166
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=81.21 E-value=0.97 Score=31.22 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .+.|.++.|...|++..
T Consensus 42 ~s~~eLA~~lglS~---~----tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 42 APLREISKITGLAE---S----TIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSSCC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeEe
Confidence 57899999999944 7 89999999999999864
No 167
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=81.19 E-value=0.9 Score=28.39 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=28.8
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..|||+.++++. . .+++.|+.|...|++....
T Consensus 37 s~~eLa~~~~vSr---~----tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 37 SVADIRAQFGVAA---K----TVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp CHHHHHHHSSSCT---T----HHHHHTTTTTTSSCCEEET
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEeC
Confidence 7889999999954 7 8999999999999997554
No 168
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=81.01 E-value=0.67 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCHHHHHHhCCCCC-CCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHP-IKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~-~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..||++.++.++ -++. .+.|+|+.|...|++....
T Consensus 24 ~t~~ei~~~l~~~~~~s~~----Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 24 INTNEVIKELSKTSTWSPK----TIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp EEHHHHHHHHHHHSCCCHH----HHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHhhcCCccHH----HHHHHHHHHHHCCCeEEEe
Confidence 36789999987421 1457 8999999999999997654
No 169
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=80.90 E-value=1.2 Score=29.17 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|..|||+++|+++ . .+.|.++.|...|++...
T Consensus 19 ~~~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 19 TPFTEIAKKLGISE---T----AVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHHTSSCCC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEecc
Confidence 47899999999944 7 899999999999998643
No 170
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=80.90 E-value=3.5 Score=28.64 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=38.6
Q ss_pred CHHHHHHhCC-CCCCCchhhhhhHHHHHHHHHhcCcceeeccC--CCCcccceechHhhhhhh
Q 045905 2 TLNELINALP-FHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG--QNDQERSYVATNASKLLL 61 (128)
Q Consensus 2 S~~eLA~~~~-~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~--~~~~~~~y~~T~~s~~L~ 61 (128)
|+.|||+.++ ++ .. .+.+-|+.|...|++...... .+..++.|.+++-+..+.
T Consensus 38 ~~~~l~~~l~~~~---~~----~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~~ 93 (182)
T 4g6q_A 38 TTRELAELLPDVA---TT----TLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDAD 93 (182)
T ss_dssp EHHHHHHHCTTBC---HH----HHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTSS
T ss_pred CHHHHHHHhcCCC---HH----HHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccCC
Confidence 6789999996 63 36 799999999999999754321 111246799998876554
No 171
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=80.68 E-value=1.2 Score=30.49 Aligned_cols=34 Identities=9% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
||...|++++.+ .-. +-+++||.|...|++....
T Consensus 64 ITpsvlseRlkI---~gS----LARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 64 LTVSTVVEKLKV---NGS----LARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp ECHHHHHHHHCB---CHH----HHHHHHHHHHHTTSEEEEE
T ss_pred ecHHHHHHHhcc---hHH----HHHHHHHHHHHCCCEEEEe
Confidence 588999999999 447 8999999999999987653
No 172
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=80.56 E-value=1.2 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=28.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .+.|.++.|...|++..
T Consensus 23 ~s~~ela~~lg~s~---~----tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 23 TAYAELAKQFGVSP---E----TIHVRVEKMKQAGIITG 54 (152)
T ss_dssp SCHHHHHHHHTSCH---H----HHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHcCCcce
Confidence 47899999999944 7 89999999999999974
No 173
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=80.44 E-value=2 Score=29.89 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .|.|+|+.|...|++....
T Consensus 181 ~t~~~lA~~lg~sr---~----tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 181 LSREELATLSNMTV---S----NAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp CCHHHHHHHTTSCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEeeCC
Confidence 47789999999944 7 9999999999999997553
No 174
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=80.22 E-value=2.3 Score=27.49 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=32.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
++.|||..+++ +.. .+.++|+.|+..|.+.... ++.|-++..
T Consensus 22 ~~~~la~~~~~---~~~----~~~~~l~~l~~~G~l~~i~------~~~~~~~~~ 63 (121)
T 2pjp_A 22 WVRDLAKETGT---DEQ----AMRLTLRQAAQQGIITAIV------KDRYYRNDR 63 (121)
T ss_dssp EHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEEEE------TTEEEEHHH
T ss_pred CHHHHHHHhCC---CHH----HHHHHHHHHHHCCCEEEec------CCceECHHH
Confidence 46799999999 447 8999999999999887665 355555444
No 175
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=80.11 E-value=1.9 Score=27.51 Aligned_cols=33 Identities=6% Similarity=0.151 Sum_probs=28.5
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..|||+.+|++ .. .+++.++.|...|++....
T Consensus 35 s~~~La~~~~vS---r~----tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 35 SIRKISTEYQIN---PL----TVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp CHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEec
Confidence 678999999994 47 8999999999999987554
No 176
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=79.98 E-value=1.6 Score=29.08 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=32.5
Q ss_pred CHHHHHHhCCC--CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 2 TLNELINALPF--HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 2 S~~eLA~~~~~--~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
|++||.+.+.- +..+.. -+||.|..|+..|++......+ +..+|.+.
T Consensus 31 sa~eI~~~l~~~~~~is~a----TVYR~L~~L~e~Glv~~~~~~~--g~~~Y~~~ 79 (139)
T 3mwm_A 31 SAQELHDMLKHKGDAVGLT----TVYRTLQSLADAGEVDVLRTAE--GESVYRRC 79 (139)
T ss_dssp EHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTSSEEEECTT--SCEEEECC
T ss_pred CHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHCCCEEEEEcCC--CceEEEEC
Confidence 67888877631 112557 8999999999999998765311 13468764
No 177
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=79.81 E-value=1.9 Score=28.08 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=29.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
||...|++++.++- . +-+++||.|...|++....
T Consensus 60 ITpsvlseRlkI~g---S----LAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 60 VSVSVLVDRLKIGG---S----LARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp BSHHHHHHTTCCCT---T----HHHHHHHHHSSSSSCEEEE
T ss_pred EeHHHhhhhhhhhH---H----HHHHHHHHHHHCCCEEEEe
Confidence 58899999999954 7 8899999999999997664
No 178
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=79.77 E-value=1.7 Score=29.94 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.+||+.+|+.+ . .|.|+|+.|...|++....
T Consensus 170 ~t~~~lA~~lg~sr---~----tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 170 ITHETIANHLGSHR---E----VITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEEeCC
Confidence 46789999999944 7 9999999999999997553
No 179
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=79.65 E-value=1.7 Score=29.70 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .+.|+|+.|...|++....
T Consensus 147 ~t~~~lA~~lg~sr---~----tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 147 ATHDELAAAVGSVR---E----TVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEEeCC
Confidence 47789999999944 7 9999999999999997543
No 180
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=79.65 E-value=1.5 Score=30.19 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=28.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .+.|.++-|...|++..
T Consensus 32 ~s~~eLA~~lglS~---~----tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 32 LTISELSEQLKKPE---S----TIHFRIKKLQERGVIER 63 (171)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEe
Confidence 58899999999944 7 89999999999999864
No 181
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=79.63 E-value=1.6 Score=29.85 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .|.|+|+-|...|++....
T Consensus 164 ~t~~~lA~~lg~sr---~----tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 164 IRHHELAALAGTSR---E----TVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEEecC
Confidence 47789999999944 7 9999999999999997553
No 182
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=79.37 E-value=1.5 Score=29.98 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.+||+.+|+.+ . .+.|+|+.|...|++....
T Consensus 168 ~t~~~iA~~lg~sr---~----tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 168 ITRQEIGQIVGCSR---E----TVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHhCCcH---H----HHHHHHHHHHHCCcEEeCC
Confidence 46789999999944 7 9999999999999997653
No 183
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=79.33 E-value=1.7 Score=30.24 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.+||+.+|+.+ . .|.|+|+.|...|++....
T Consensus 176 ~t~~~iA~~lg~sr---~----tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 176 LGTQDIMARTSSSR---E----TVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHhCCcH---H----HHHHHHHHHHHCCcEEecC
Confidence 47789999999944 7 9999999999999997553
No 184
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=79.02 E-value=1.3 Score=30.12 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=27.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..|||+++|+++ . .++|-++-|...|++..
T Consensus 18 ~s~~~la~~lg~s~---~----tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 18 LAVADLAKKVGLST---T----PCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp SCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSSCC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCeee
Confidence 57899999999944 7 89999999999999863
No 185
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=78.72 E-value=2.4 Score=26.84 Aligned_cols=33 Identities=6% Similarity=0.167 Sum_probs=28.6
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..|||+++++. .. .+++-|+.|...|++....
T Consensus 45 s~~eLa~~lgVS---r~----tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 45 VASKIADRVGIT---RS----VIVNALRKLESAGVIESRS 77 (102)
T ss_dssp CHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEEe
Confidence 788999999994 47 8999999999999997553
No 186
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=78.71 E-value=2.2 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=28.7
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..|||+.+|++. . .+++.++.|...|++....
T Consensus 39 s~~~La~~~~vSr---~----tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 39 SVREMGVKLAVNP---N----TVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp CHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHCCeEEEec
Confidence 5789999999944 7 8999999999999997654
No 187
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=78.71 E-value=2 Score=30.13 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .|.|+|+.|...|++....
T Consensus 187 ~t~~~lA~~lG~sr---~----tvsR~l~~l~~~glI~~~~ 220 (232)
T 1zyb_A 187 VKMDDLARCLDDTR---L----NISKTLNELQDNGLIELHR 220 (232)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSCEEET
T ss_pred CCHHHHHHHhCCCh---h----HHHHHHHHHHHCCCEEecC
Confidence 47789999999944 7 9999999999999997553
No 188
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=78.67 E-value=1.8 Score=30.97 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCcceeeccCCCCc--ccceechHhhhhhh
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQNDQ--ERSYVATNASKLLL 61 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~~~~--~~~y~~T~~s~~L~ 61 (128)
.||+.|+-|...|++......+++. ..+|.+|+.|+...
T Consensus 73 ~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l 113 (204)
T 3l9f_A 73 MIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKEL 113 (204)
T ss_dssp CHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHH
T ss_pred hHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHH
Confidence 8999999999999997553222221 34799999997543
No 189
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=78.12 E-value=1.7 Score=30.15 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .|.|+|+.|...|++....
T Consensus 188 lt~~~lA~~lg~sr---~----tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 188 VSRQELARLVGCSR---E----MAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCcH---H----HHHHHHHHHHHCCCEEECC
Confidence 46789999999944 7 9999999999999997653
No 190
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=77.82 E-value=3.3 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.6
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..+||+.+|++ .. .+++.++.|...|++....
T Consensus 30 se~~La~~~gvS---r~----tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 30 STNELAAFHRIN---PA----TARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp CHHHHHHHTTCC---HH----HHHHHHHHHHTTTSEEEET
T ss_pred CHHHHHHHHCcC---HH----HHHHHHHHHHHCCcEEEec
Confidence 678999999994 47 8999999999999997654
No 191
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=77.79 E-value=2.3 Score=32.00 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcce-eec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFA-QQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~-e~~ 41 (128)
+|..|||+++++. .. .++|.|..|-..|++. ...
T Consensus 22 ~~~~ela~~l~vS---~~----tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 22 MTQAQIARELGIY---RT----TISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp CCHHHHHHHTTCC---HH----HHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHHHCCcEEEEec
Confidence 5789999999994 47 8999999999999997 443
No 192
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=77.73 E-value=1.4 Score=30.43 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|-.|||+.+|+.+ . .+.|+|+.|...|++...
T Consensus 168 ~t~~~lA~~lg~sr---~----tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 168 LNTEEIALMLGTTR---Q----TVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEES
T ss_pred CCHHHHHHHhCCcH---H----HHHHHHHHHHHCCCEEEc
Confidence 46789999999944 7 999999999999999764
No 193
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=77.56 E-value=1.6 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=29.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.+||+.+|+.+ . .+.|+|+.|...|++....
T Consensus 179 ~t~~~lA~~lg~sr---~----tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 179 VAKQLVAGHLSIQP---E----TFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp SCTHHHHHHTTSCH---H----HHHHHHHHHHHHTSEEESS
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCcEEecC
Confidence 46789999999944 7 9999999999999997543
No 194
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=77.49 E-value=1.6 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.+||+.+|+.+ . .+.|+|+.|...|++....
T Consensus 164 ~t~~~lA~~lG~sr---~----tvsR~l~~L~~~g~I~~~~ 197 (222)
T 1ft9_A 164 FTVEEIANLIGSSR---Q----TTSTALNSLIKEGYISRQG 197 (222)
T ss_dssp CCHHHHHHHHCSCH---H----HHHHHHHHHHHTTSSEECS
T ss_pred CCHHHHHHHhCCcH---H----HHHHHHHHHHHCCcEEEcC
Confidence 47789999999944 7 9999999999999997654
No 195
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=77.32 E-value=1.9 Score=30.14 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=28.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
.|..|||+.+|++ .. .++|.|+.|...|++...
T Consensus 25 ~s~~eia~~lgl~---~~----tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 25 PSVREIARRFRIT---PR----GALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCHHHHHHHHTSC---HH----HHHHHHHHHHHTTSEECC
T ss_pred CCHHHHHHHcCCC---cH----HHHHHHHHHHHCCCEEec
Confidence 4789999999994 36 799999999999999754
No 196
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=76.80 E-value=2.2 Score=29.54 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .+.|+|+.|...|++....
T Consensus 178 ~t~~~lA~~lg~sr---~----tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 178 LTQEEIAQLVGASR---E----TVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCcH---H----HHHHHHHHHHHCCCEEecC
Confidence 47789999999944 7 9999999999999997653
No 197
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=76.58 E-value=1.6 Score=30.79 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|..|||+.+|+++ . .+.|.++.|...|++...
T Consensus 34 ~s~~eLA~~lglS~---s----tv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 34 MTISQLSEILGKTP---Q----TIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEE
Confidence 47899999999944 7 899999999999999765
No 198
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=76.03 E-value=1.8 Score=30.69 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=29.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .|.|+|+.|...|++....
T Consensus 194 lt~~~lA~~lG~sr---~----tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 194 LSHQAIAEAIGSTR---V----TVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHCCcH---H----HHHHHHHHHHHCCCEEEcC
Confidence 46789999999944 7 9999999999999997653
No 199
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=75.88 E-value=1.6 Score=29.47 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=32.1
Q ss_pred CHHHHHHhCCC--CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 2 TLNELINALPF--HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 2 S~~eLA~~~~~--~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
|+.||.+.+.- +..+.. .+||.|..|+..|++......+ +..+|.++
T Consensus 35 sa~ei~~~l~~~~~~is~a----TVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~~ 83 (150)
T 2w57_A 35 SAEELYKKLIDLGEEIGLA----TVYRVLNQFDDAGIVTRHHFEG--GKSVFELS 83 (150)
T ss_dssp EHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTSEEEEECGG--GCEEEEEC
T ss_pred CHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHCCcEEEEEeCC--CceEEEec
Confidence 67788887731 111557 8999999999999998764311 13468763
No 200
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=75.84 E-value=2.7 Score=27.05 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCcceeeccCC--CC-cccceechHhhhhhhc
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQ--ND-QERSYVATNASKLLLK 62 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~--~~-~~~~y~~T~~s~~L~~ 62 (128)
.|+++|+-|...|++....... ++ ....|.+|+.|+....
T Consensus 58 tLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 100 (115)
T 2dql_A 58 VLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAE 100 (115)
T ss_dssp HHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHH
Confidence 8999999999999997543211 12 1356999999987754
No 201
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=75.56 E-value=3.1 Score=27.18 Aligned_cols=33 Identities=9% Similarity=-0.067 Sum_probs=28.6
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..+||+.+|++ .. .+++.++.|...|++....
T Consensus 37 se~~La~~~~vS---r~----tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 37 SVRETALQEKIN---PN----TVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp CHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCcC---HH----HHHHHHHHHHHCCCEEEec
Confidence 678999999994 47 8999999999999997654
No 202
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=75.07 E-value=3.3 Score=29.04 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCHHHHHHhCCCCCCCc-hhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKA-QYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~-~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+ .+ . .|.|+|+.|...|++....
T Consensus 170 ~t~~~lA~~lG~---sr~e----tvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 170 LTMQELGYSSGI---AHSS----AVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCHHHHHHHTTC---CCHH----HHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCC---ChHH----HHHHHHHHHHHCCCEEecC
Confidence 467899999999 55 6 8999999999999997653
No 203
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=74.62 E-value=0.62 Score=35.71 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+|..|||+++++++ . .++|.+..|...|++.... ....+|+-|+.+.
T Consensus 35 ~t~~eLa~~l~vs~---~----Tv~r~l~~Le~~Glv~~~~-------~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 35 IGRRSLSETMGITE---R----VLRTETDVLKQLNLIEPSK-------SGMTLTERGLEVY 81 (345)
T ss_dssp -------------------------------------------------------------
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEEe-------cceEEcHHHHHHH
Confidence 46789999999944 7 8999999999999996332 2366777776555
No 204
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=74.59 E-value=3.3 Score=27.13 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=28.4
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..+||+.+|++ .. .+++-++.|...|++....
T Consensus 40 ser~La~~~gVS---r~----tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 40 SIREFASRIGVN---PN----TVSKAYQELERQEVIITVK 72 (134)
T ss_dssp CHHHHHHHHTCC---HH----HHHHHHHHHHHTTSEEEET
T ss_pred cHHHHHHHHCCC---HH----HHHHHHHHHHHCCcEEEEc
Confidence 567999999994 47 8999999999999997554
No 205
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=74.49 E-value=2.2 Score=30.15 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=29.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .+.|+|+.|...|++....
T Consensus 178 ~t~~~iA~~lG~sr---~----tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 178 LSQKSIGEITGVHH---V----TVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHhCCcH---H----HHHHHHHHHHHCCCeEeCC
Confidence 47789999999944 7 9999999999999997654
No 206
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=74.43 E-value=1.6 Score=28.15 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=22.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSG 35 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~g 35 (128)
+|+.|||+++++.+ . .+.|+.|.|--.|
T Consensus 40 ~si~elA~~~~vS~---a----Tv~Rf~kklG~~g 67 (111)
T 2o3f_A 40 STVNEISALANSSD---A----AVIRLCXSLGLKG 67 (111)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHHHHTTCSS
T ss_pred cCHHHHHHHHCCCH---H----HHHHHHHHcCCCC
Confidence 58899999999944 7 7888888776554
No 207
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=73.96 E-value=0.4 Score=37.02 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=37.4
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
|+.|||+.+|++. . .+++.|+-|...|++..... .+..|...+...+|
T Consensus 34 t~~eia~~~gv~~---~----~Vy~~L~~L~~~GlV~~~~g----~p~~y~av~p~~~l 81 (342)
T 3qph_A 34 TAKEISTKSGIPY---N----RVYDTISSLKLRGFVTEIEG----TPKVYAAYSPRIAF 81 (342)
T ss_dssp HHSCCSSSTTSSS---C----SCCHHHHHHHHHTSEEEECC----TTCEEEECCHHHHH
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEEcC----ceeEEEEcCHHHHH
Confidence 6789999999965 6 88999999999999976531 24678877766554
No 208
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=73.59 E-value=2.7 Score=28.56 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCcceeeccCC-C-C-cccceechHhhhhhhc
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQ-N-D-QERSYVATNASKLLLK 62 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~-~-~-~~~~y~~T~~s~~L~~ 62 (128)
.|+++|+-|...|++....... + + ....|.+|+.|+.+..
T Consensus 80 tLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~ 122 (148)
T 2zfw_A 80 VLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSR 122 (148)
T ss_dssp HHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTH
T ss_pred HHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHH
Confidence 8999999999999997653211 1 2 1356999999987654
No 209
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=73.38 E-value=1.1 Score=32.76 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=35.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee-eccCC-CCc-ccceechHhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ-QNFGQ-NDQ-ERSYVATNAS 57 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e-~~~~~-~~~-~~~y~~T~~s 57 (128)
+|..|||+.+++++ . .+.+.|+.|...|++.. ..... .|. ...|.+|+.+
T Consensus 26 ~s~~ELa~~lglS~---s----tVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~ 78 (232)
T 2qlz_A 26 CYFSLLSSKVSVSS---T----AVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAK 78 (232)
T ss_dssp TCSSSSCTTCCCCH---H----HHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccch
Confidence 46789999999944 7 89999999999999987 32110 010 2358888755
No 210
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=73.21 E-value=1.1 Score=23.29 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=17.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWI 30 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~ 30 (128)
+|..|||..+|++. . .++|.++.
T Consensus 22 ~s~~~IA~~lgis~---~----Tv~~~~~~ 44 (51)
T 1tc3_C 22 VSLHEMSRKISRSR---H----CIRVYLKD 44 (51)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHhh
Confidence 47889999999844 6 78887764
No 211
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=72.65 E-value=2.4 Score=30.42 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+|+.+ . .|.|+|+-|...|++....
T Consensus 218 lt~~~lA~~lG~sr---~----tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 218 ITRQEIGQIVGCSR---E----TVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCCEEEcC
Confidence 46789999999944 7 9999999999999997543
No 212
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=71.97 E-value=2.2 Score=27.99 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCHHHHHHhCCCCC-CCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHP-IKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~-~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..||++.++... .+.. .+.|+|.-|...|++....
T Consensus 25 ~t~~el~~~l~~~~~~~~~----Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 25 QTVRQVHEALSARRDLAYT----TVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp EEHHHHHHHHTTTCCCCHH----HHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHhccCCCCHH----HHHHHHHHHHHCCCEEEEe
Confidence 36789999998321 1557 8999999999999997654
No 213
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=71.56 E-value=3.2 Score=27.75 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=32.6
Q ss_pred CCHHHHHHhCCC--CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 1 MTLNELINALPF--HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 1 ~S~~eLA~~~~~--~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
+|+.||.+.+.- +..+.. -+||.|..|+..|++......+ +..+|.+.
T Consensus 34 ~ta~ei~~~l~~~~~~is~~----TVYR~L~~L~e~Glv~~i~~~~--~~~~Y~~~ 83 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINIS----TVYRTLELLEELGLVSHAHLGH--GAPTYHLA 83 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHH----HHHHHHHHHHHHTSEEEEECGG--GCEEEEET
T ss_pred CCHHHHHHHHHhhCCCCCHh----HHHHHHHHHHHCCcEEEEEeCC--CceEEEeC
Confidence 377888777632 122567 8999999999999998765311 13467754
No 214
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=70.49 E-value=2.8 Score=29.25 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=25.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGF 36 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gv 36 (128)
+|-.+||+.+|+.+ . .|.|+|+.|...||
T Consensus 179 ~t~~~iA~~lg~sr---~----tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 179 YDKMLIAGRLGMKP---E----SLSRAFSRLKAAGV 207 (237)
T ss_dssp SCTHHHHHHTTCCH---H----HHHHHHHHHGGGTE
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCe
Confidence 35689999999944 7 99999999999996
No 215
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=70.48 E-value=1.6 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSG 35 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~g 35 (128)
+|+.|||+++++.+ . .+.|+.|.|--.|
T Consensus 36 ~si~elA~~~~vS~---a----Tv~Rf~kkLGf~g 63 (107)
T 3iwf_A 36 MTSQEIANQLETSS---T----SIIRLSKKVTPGG 63 (107)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHSTTH
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHHHhCCCC
Confidence 58899999999954 7 8999999886555
No 216
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=70.10 E-value=5.7 Score=30.74 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=41.3
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDI 64 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~ 64 (128)
+.+++++.++++ .. ..+|.|+.|+..|++.+... |...+|...++-.+|.++.
T Consensus 313 t~~~~~~~~gvS---~~----Ta~r~L~~L~e~GiL~~~~~---gR~~~y~~~~~~~~l~~~~ 365 (373)
T 2qc0_A 313 RIQNLVESGLAK---RQ----TASVYLKQLCDIGVLEEVQS---GKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp EHHHHHHTSSSC---HH----HHHHHHHHHHHTTSCEEC-----CCSCEEECHHHHHHHHSSC
T ss_pred cHHHHHHHhCCC---HH----HHHHHHHHHHHCCcEEEecC---CCceEEehHHHHHHHccCC
Confidence 567899999984 37 89999999999999987652 2236799999888887654
No 217
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=69.84 E-value=2.2 Score=24.81 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=17.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||+++|+++ . .+.|+|.
T Consensus 1 ~T~~diA~~aGVS~---s----TVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSR---T----TASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 58899999999943 6 6777665
No 218
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=69.54 E-value=2.3 Score=27.82 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=27.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|..+||+.+|++. . .+++.++.|...|++....
T Consensus 37 s~~~La~~~~vSr---~----tvr~Al~~L~~~G~i~~~~ 69 (126)
T 3ic7_A 37 SVREYASIVEVNA---N----TVMRSYEYLQSQEVIYNKR 69 (126)
T ss_dssp CTTTTTTCC-CCS---G----GGHHHHHHHHTTTSEEEET
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHCCcEEEEc
Confidence 5678999999955 7 8999999999999997654
No 219
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=69.14 E-value=4.2 Score=28.15 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCc-ceeeccCCCCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGF-FAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gv-f~e~~~~~~~~~~~y~~T~~ 56 (128)
+|..|||++++++ .. .++|=++.|-..|+ +.... +.|.+++.
T Consensus 37 ~s~~eLa~~l~vS---~~----Ti~rdi~~L~~~G~~I~~~~-------~Gy~l~~~ 79 (187)
T 1j5y_A 37 VSGAQLAEELSVS---RQ----VIVQDIAYLRSLGYNIVATP-------RGYVLAGG 79 (187)
T ss_dssp BCHHHHHHHHTSC---HH----HHHHHHHHHHHHTCCCEEET-------TEEECCTT
T ss_pred cCHHHHHHHHCcC---HH----HHHHHHHHHHHCCCeEEEEC-------CEEEECCc
Confidence 4889999999994 47 89999999999998 54322 34666654
No 220
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=69.00 E-value=3.9 Score=30.93 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=33.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATN 55 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~ 55 (128)
+|..|||++++++. . .++|-++.|-..|+..+... ...|.+.+
T Consensus 20 ~s~~eLa~~l~vS~---~----ti~r~l~~L~~~G~~i~~~~-----g~GY~l~~ 62 (321)
T 1bia_A 20 HSGEQLGETLGMSR---A----AINKHIQTLRDWGVDVFTVP-----GKGYSLPE 62 (321)
T ss_dssp BCHHHHHHHHTSCH---H----HHHHHHHHHHHTTCCCEEET-----TTEEECSS
T ss_pred cCHHHHHHHHCCCH---H----HHHHHHHHHHhCCCcEEEec-----CCCcEEee
Confidence 47899999999944 7 89999999999998865542 23466643
No 221
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=68.18 E-value=4 Score=25.10 Aligned_cols=57 Identities=19% Similarity=0.110 Sum_probs=37.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQ 73 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~ 73 (128)
+|++|||+.+++++ . .|.|+++..+...+-.-- ..+.+..+.++|... ..++.....
T Consensus 20 ~~~~~lA~~~~~S~---~----~l~r~fk~~~g~s~~~~~--------~~~Rl~~A~~lL~~~-~~si~~iA~ 76 (103)
T 3lsg_A 20 FTLSVLSEKLDLSS---G----YLSIMFKKNFGIPFQDYL--------LQKRMEKAKLLLLTT-ELKNYEIAE 76 (103)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHCcCHHHHH--------HHHHHHHHHHHHHCC-CCCHHHHHH
Confidence 47899999999954 7 899999987654443322 246666677777653 234554433
No 222
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=67.90 E-value=5.1 Score=30.87 Aligned_cols=34 Identities=6% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+++++.+ . .+.++++.|...|++.|..
T Consensus 31 ~sr~~la~~~~ls~---~----tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 31 VSRIDLSRLAQLAP---A----SITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHHHHHHHHTSEEEC-
T ss_pred cCHHHHHHHHCCCH---H----HHHHHHHHHHHCCcEEeec
Confidence 58899999999944 7 8999999999999998854
No 223
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=67.57 E-value=5.1 Score=28.83 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=29.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
++..|||+.+|++ .. .+++-|+.|...|++....
T Consensus 50 L~e~~La~~lgVS---r~----~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 50 LRQQELATLFGVS---RM----PVREALRQLEAQSLLRVET 83 (237)
T ss_dssp CCHHHHHHHHTSC---HH----HHHHHHHHHHHTTSEEEET
T ss_pred eCHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEEEeC
Confidence 3678999999994 47 8999999999999997664
No 224
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=66.37 E-value=7.2 Score=30.32 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.5
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDI 64 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~ 64 (128)
|..++++.++++ .. ...|.|+.|+..|++.+... |...+|....+=++|.++.
T Consensus 313 t~~~~~~~~~~S---~~----TA~r~L~~L~e~GiL~~~~~---gR~~~y~~~~~l~il~~~~ 365 (373)
T 3eqx_A 313 RIQNLVESGLAK---RQ----TASVYLKQLCDIGVLEEVQS---GKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp EHHHHHHTSSSC---HH----HHHHHHHHHHHTTSCEEC-----CCSCEEECHHHHHHHHSSC
T ss_pred cHHHHHHHhCcC---HH----HHHHHHHHHHHCCcEEEeCC---CCceEeehHHHHHHHhccC
Confidence 567888888883 36 78999999999999987652 2246799998888887654
No 225
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=66.05 E-value=1.2 Score=30.80 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|-.+||+.+|+.+ . .|.|+|+.|...|++...
T Consensus 165 ~t~~~lA~~lg~sr---~----tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 165 VTLEELSRLFGCAR---P----ALSRVFQELEREGYIEKH 197 (213)
T ss_dssp ----------------------------------------
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHHHHHHCCeEEEc
Confidence 46789999999955 7 899999999999998644
No 226
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=66.00 E-value=6.2 Score=22.78 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
++..|++.|+ +.+ .+..+||-|...|+..-
T Consensus 28 I~~~a~kygV---~kd----eV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 28 IEHFSKVYGV---EKQ----EVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHCC---CHH----HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCC---CHH----HHHHHHHHHHHCCCeec
Confidence 5678999999 447 89999999999998763
No 227
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=65.92 E-value=3.8 Score=27.40 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCcceeeccCC--CC-cccceechHhhhhhhcC
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQ--ND-QERSYVATNASKLLLKD 63 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~--~~-~~~~y~~T~~s~~L~~~ 63 (128)
.|+++|+-|...|++....... ++ ....|.+|+.|+.....
T Consensus 70 tLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~ 113 (138)
T 2e1n_A 70 VLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRD 113 (138)
T ss_dssp HHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHH
Confidence 8999999999999997543211 12 13469999999876543
No 228
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=65.87 E-value=4.6 Score=25.05 Aligned_cols=57 Identities=7% Similarity=0.123 Sum_probs=37.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQ 73 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~ 73 (128)
+|+++||+.+|+++ . .|.|+++..+...+-.-- ..+.+..+-++|... ..++.....
T Consensus 21 ~~~~~lA~~~~~S~---~----~l~r~fk~~~G~s~~~~~--------~~~Rl~~A~~lL~~~-~~si~~IA~ 77 (107)
T 2k9s_A 21 FDIASVAQHVCLSP---S----RLSHLFRQQLGISVLSWR--------EDQRISQAKLLLSTT-RMPIATVGR 77 (107)
T ss_dssp CCHHHHHHHTTSCH---H----HHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHHHHHCcCHHHHH--------HHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 57899999999944 7 899999876654443322 246666676677643 234554433
No 229
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=65.71 E-value=3.3 Score=25.78 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQ 73 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~ 73 (128)
+|+++||+.+|+++ . .|.|+++..+...+-.-- ..+.+..+.++|.... .++.....
T Consensus 22 ~~~~~lA~~~~~S~---~----~l~r~fk~~~G~s~~~~~--------~~~Rl~~A~~lL~~~~-~si~~IA~ 78 (108)
T 3oou_A 22 MSLKTLGNDFHINA---V----YLGQLFQKEMGEHFTDYL--------NRYRVNYAKEELLQTK-DNLTIIAG 78 (108)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHHHCC-CCHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHCcCHHHHH--------HHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 57899999999954 7 899999987655544322 2466777777776432 34554433
No 230
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=65.64 E-value=1.7 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=28.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
||...|++++.++- . +-+++||.|...|++....
T Consensus 61 ITpsvlseRlkI~g---S----LAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 61 ITPSVLSERLRING---S----LARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp EEEHHHHHHHHTCC---H----HHHHHHHHHHHHHTSCEEC
T ss_pred EeHHHHHhhhcccH---H----HHHHHHHHHHHCCCEEEEe
Confidence 46788999999954 7 8899999999999997664
No 231
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=65.44 E-value=4.3 Score=31.13 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeecc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNF 42 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~ 42 (128)
+|-.|||+++++.+ . .+.++++-|...|++.|...
T Consensus 34 ~sr~~la~~~gls~---~----tv~~~v~~L~~~gli~~~~~ 68 (380)
T 2hoe_A 34 VSRVELAEELGLTK---T----TVGEIAKIFLEKGIVVEEKD 68 (380)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHHTSEEEEEC
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEeecC
Confidence 47899999999944 7 89999999999999988653
No 232
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.34 E-value=3 Score=23.83 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=17.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWI 30 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~ 30 (128)
+|..|||+.+|+++ ..+-..+.|.++.
T Consensus 26 ~s~~eIA~~lgis~---~tV~~~~~ra~~k 52 (68)
T 2p7v_B 26 YTLEEVGKQFDVTR---ERIRQIEAKALRK 52 (68)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHG
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHH
Confidence 48899999999955 4222234444443
No 233
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=64.62 E-value=5.5 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=18.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWIL 31 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L 31 (128)
+|..|||+.+++++ ..+-..+.|+++-|
T Consensus 14 ~s~~eIA~~l~is~---~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 14 YTNHGISEKLHISI---KTVETHRMNMMRKL 41 (61)
T ss_dssp CCSHHHHHHTCSCH---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCH---HHHHHHHHHHHHHH
Confidence 47889999999955 42223455555544
No 234
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.94 E-value=4.6 Score=24.47 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=19.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||+.+|+++ ..+-..+.|.++.|-
T Consensus 54 ~s~~eIA~~lgis~---~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATDLGIAE---GTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHHHTSCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHH
Confidence 48899999999954 423334566555553
No 235
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=63.92 E-value=3.3 Score=25.73 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCC-CcHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDIT-LTVRSFLQA 74 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~-~s~~~~~~~ 74 (128)
+|+++||+.+|+++ . .|.|+++..+...+-.-- ..+.+..+-++|..... .++......
T Consensus 19 ~~~~~lA~~~~~s~---~----~l~r~fk~~~G~s~~~~~--------~~~Rl~~A~~lL~~~~~~~si~~IA~~ 78 (108)
T 3mn2_A 19 ITIEKLTALTGISS---R----GIFKAFQRSRGYSPMAFA--------KRVRLQHAHNLLSDGATPTTVTAAALS 78 (108)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHTSSCHHHHH--------HHHHHHHHHHHHHSSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHHHHhCcCHHHHH--------HHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 58999999999954 7 899999976654443322 34667777777776542 356555433
No 236
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=63.60 E-value=5 Score=23.14 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=20.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||..+|+++ ..+-..+.|.++.|-
T Consensus 31 ~s~~eIA~~l~is~---~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 31 HTLEEVGAYFGVTR---ERIRQIENKALRKLK 59 (73)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCH---HHHHHHHHHHHHHHH
Confidence 48899999999955 433335666666654
No 237
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=62.89 E-value=5.7 Score=30.95 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|-.|||+.+++.+ + .+.++++.|...|++.|..
T Consensus 54 ~sr~ela~~~gls~---~----tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 54 ISRIDLSKESELAP---A----SITKITRELIDAHLIHETT 87 (429)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEEC
T ss_pred cCHHHHHHHHCCCH---H----HHHHHHHHHHHCCCEEecc
Confidence 57899999999944 7 8999999999999998864
No 238
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=61.76 E-value=3.7 Score=25.76 Aligned_cols=57 Identities=7% Similarity=0.002 Sum_probs=37.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQ 73 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~ 73 (128)
+|+++||+.+++++ . .|.|+++..+...+-.-- ..+.+..+.++|... ..++.....
T Consensus 24 ~~~~~lA~~~~~S~---~----~l~r~fk~~~G~s~~~~~--------~~~Rl~~A~~lL~~~-~~~i~eIA~ 80 (113)
T 3oio_A 24 LSTDDIAYYVGVSR---R----QLERLFKQYLGTVPSKYY--------LELRLNRARQLLQQT-SKSIVQIGL 80 (113)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHHHHTSSCHHHHH--------HHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHCcCHHHHH--------HHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 58899999999954 7 899999976655443322 246666777777653 234555433
No 239
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=61.47 E-value=8.2 Score=21.31 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=20.8
Q ss_pred CCHHHHHHhC-----CCCCCCchhhhhhHHHHHHHHHhcCcc
Q 045905 1 MTLNELINAL-----PFHPIKAQYVAQYVYRFMWILVHSGFF 37 (128)
Q Consensus 1 ~S~~eLA~~~-----~~~~~~~~~~~~~L~RlLR~L~~~gvf 37 (128)
+|+.||++.+ ++ ... -++|-|. ..|++
T Consensus 20 ~t~~el~~~l~~~~~~v---s~~----Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 20 ETQDELVDMLKQDGYKV---TQA----TVSRDIK---ELHLV 51 (64)
T ss_dssp CSHHHHHHHHHHTTCCC---CHH----HHHHHHH---HHTCE
T ss_pred CCHHHHHHHHHHhCCCc---CHH----HHHHHHH---HcCCE
Confidence 4789999999 77 446 7888888 55776
No 240
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=61.42 E-value=5.6 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=18.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWIL 31 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L 31 (128)
+|..|||..+|+++ ..+-..+.|.++.|
T Consensus 39 ~s~~EIA~~lgis~---~tV~~~~~ra~~kL 66 (87)
T 1tty_A 39 KTLEEVGQYFNVTR---ERIRQIEVKALRKL 66 (87)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCH---HHHHHHHHHHHHHH
Confidence 48899999999955 42333455555554
No 241
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=61.41 E-value=7.3 Score=28.79 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.5
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHH-HHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMW-ILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR-~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+..++|+.+|+ +.. .|+|.|+ +|...|++.... +....|+.+...
T Consensus 281 ~~~~~a~~lg~---~~~----tl~~~l~~~l~~~gli~~~~-------~g~~~t~~~~~~ 326 (338)
T 3pfi_A 281 GLASIAAALSE---DEN----TIEDVIEPYLLANGYIERTA-------KGRIASAKSYSA 326 (338)
T ss_dssp CHHHHHHHTTC---CHH----HHHHTTHHHHHHTTSEEEET-------TEEEECHHHHHH
T ss_pred hHHHHHHHhCC---CHH----HHHHHHhHHHHHcCceecCC-------CcccccHHHHHH
Confidence 57899999999 447 8999999 999999997664 335577766533
No 242
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=61.12 E-value=3.5 Score=21.46 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=16.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||..+|++. . .++|.++
T Consensus 22 ~s~~~ia~~lgvs~---~----Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGV---S----TLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCH---H----HHHHHSC
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHH
Confidence 47889999999943 6 7777654
No 243
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=61.09 E-value=10 Score=22.82 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCHHHHHHhCCC-CCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPF-HPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~-~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+++.++|.++++ .- . .+|-|.-.|.+.|++.-..
T Consensus 31 i~l~~aa~~L~v~~k---R----RiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 31 LDLKLAADTLAVRQK---R----RIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp EEHHHHHHHTTTCCT---H----HHHHHHHHHHHHTSEEEEE
T ss_pred CcHHHHHHHhCCccc---e----ehhhHHHHHhHhcceeecC
Confidence 367899999998 43 6 8999999999999997653
No 244
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=60.76 E-value=3.6 Score=26.08 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=29.0
Q ss_pred CCHHHHHHhCCCC-CCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFH-PIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~-~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..|||+.++.+ +-++. .+.+++.-|...|++....
T Consensus 25 ~t~~el~~~l~~~~~~~~~----Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 25 VSANEIVVEIQKYKEVSDK----TIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp EEHHHHHHHHHTTSCCCHH----HHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHhhcCCCChh----hHHHHHHHHHHCCceEEEe
Confidence 3678999998752 11457 8999999999999997654
No 245
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.16 E-value=5.9 Score=27.02 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCHHHHHHhCCC----CCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 1 MTLNELINALPF----HPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 1 ~S~~eLA~~~~~----~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
+|++||.+.+.- +..+.. -+||.|..|+..|++.+....+ +..+|.+.
T Consensus 49 ~sA~eI~~~l~~~~~~~~is~a----TVYRtL~~L~e~Glv~~i~~~~--~~~~Y~~~ 100 (162)
T 4ets_A 49 YTPESLYMEIKQAEPDLNVGIA----TVYRTLNLLEEAEMVTSISFGS--AGKKYELA 100 (162)
T ss_dssp BCHHHHHHHHHHHCGGGCCCHH----HHHHHHHHHHHTTSEEECC-------CCEEEC
T ss_pred CCHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHHCCCEEEEEeCC--CceEEEeC
Confidence 367777776531 112557 8999999999999998764311 13467765
No 246
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=59.84 E-value=35 Score=22.57 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=46.8
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhc---CcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHHhcCh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHS---GFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQAVLDP 78 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~---gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~~~~~ 78 (128)
|+..-|+++++.. + .+.|.++.|=.. .+|....... ..+.+.+|+.|+.|... .+.++. ..+.
T Consensus 40 S~s~AA~~L~iSq---s----avS~~I~~LE~~lG~~Lf~R~~~G~--~grg~~LT~~G~~ll~~----a~~il~-~~~~ 105 (135)
T 2ijl_A 40 SISAAGRAMDMSY---R----RAWLLVDALNHMFRQPVICSQRGGK--QGGGAALTVFGAELLER----YRGMEE-RMNE 105 (135)
T ss_dssp CHHHHHHHTTCCH---H----HHHHHHHHHHHHBSSCSEEECCC--------EEECHHHHHHHHH----HHHHHH-HHHH
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHHHCCeeEEecCCCC--CCCceeECHHHHHHHHH----HHHHHH-HHHH
Confidence 5667789999943 6 788888877654 5786553100 01479999999999764 333322 2233
Q ss_pred hhHHHHHhHHHhhhcC
Q 045905 79 ILTTPCQHVTTWFQND 94 (128)
Q Consensus 79 ~~~~~~~~l~~~~~~g 94 (128)
..-..+..+.+.+...
T Consensus 106 ~~~~~~~~~~~~~~~~ 121 (135)
T 2ijl_A 106 ALREDIDWLEANRNPQ 121 (135)
T ss_dssp HTHHHHHHHHHHBCCC
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3445556666666543
No 247
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=59.77 E-value=6 Score=25.07 Aligned_cols=57 Identities=11% Similarity=0.164 Sum_probs=34.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQA 74 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~ 74 (128)
+|+++||+.+++++ . .|.|+++.. ...+-.-- ..+.+..+-++|... ..++......
T Consensus 24 ~~~~~lA~~~~~S~---~----~l~r~fk~~-G~s~~~~~--------~~~Rl~~A~~lL~~~-~~si~eIA~~ 80 (120)
T 3mkl_A 24 WTLARIASELLMSP---S----LLKKKLREE-ETSYSQLL--------TECRMQRALQLIVIH-GFSIKRVAVS 80 (120)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHHHHT-TCCHHHHH--------HHHHHHHHHHHHTST-TCCHHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHc-CCCHHHHH--------HHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 58999999999954 7 888888762 22222111 346666666677533 3345554433
No 248
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=59.77 E-value=12 Score=27.24 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=31.1
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
.+.||+..+++ +.. .++.+|+.|+..|.+..-. ++.|-+...
T Consensus 159 ~~~dl~~~l~~---~~~----~~~~~l~~l~~~g~lv~l~------~~~~~~~~~ 200 (258)
T 1lva_A 159 SFKEVAGSFNL---DPS----ELEELLHYLVREGVLVKIN------DEFYWHRQA 200 (258)
T ss_dssp BHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEESS------SSBEEEHHH
T ss_pred CHHHHHhHhCC---CHH----HHHHHHHHHHHCCCEEEec------CCeEEcHHH
Confidence 36789999998 447 8899999999999777654 355554443
No 249
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=59.76 E-value=5.8 Score=30.20 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=36.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLL 60 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L 60 (128)
+|..|||+++++ ... .+.+-++.|-..|+..+..+ .+.|.+.+....|
T Consensus 20 ~Sg~eLa~~lgv---Sr~----aV~k~i~~L~~~G~~i~~~~-----~~GY~L~~~~~~l 67 (323)
T 3rkx_A 20 ISGQSIAESLNI---SRT----AVKKVIDQLKLEGCKIDSVN-----HKGHLLQQLPDIW 67 (323)
T ss_dssp BCHHHHHHHHTS---CHH----HHHHHHHHHHHTTCEEEEET-----TTEEEEEECCSSC
T ss_pred cCHHHHHHHHCC---CHH----HHHHHHHHHHhcCCeEEEeC-----CCeEEEecCcccC
Confidence 478899999999 447 89999999999998766532 3568877644333
No 250
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=59.60 E-value=7.9 Score=23.71 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=31.1
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceech
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVAT 54 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T 54 (128)
+..|||+++|+ +.. -|.+.|..|-..|.+..+. .-+|.++
T Consensus 36 kageIae~~Gv---dKK----eVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 36 KLAQLVKECQA---PKR----ELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp EHHHHHHHHTS---CHH----HHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred CHHHHHHHHCC---CHH----HHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 46799999999 447 7899999999999775544 3567775
No 251
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=59.54 E-value=8.3 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
.+.+++|.|+..|++.++.. ...-+..+.+|+.|+-+.+
T Consensus 69 ~w~~lirqLi~~G~L~~~~~-~~~~~~~L~Lt~~g~~vL~ 107 (134)
T 3aaf_A 69 WWKAFSRQLITEGFLVEVSR-YNKFMKICALTKKGRNWLH 107 (134)
T ss_dssp HHHHHHHHHHHTTSEEEEEC-SSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCceeecC-cCccCceEEECHHHHHHHh
Confidence 79999999999999988752 0000123889999986654
No 252
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=59.45 E-value=3.6 Score=22.27 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||..+|+++ . .++|.++
T Consensus 32 ~s~~eIA~~lgis~---~----TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANALGVSE---R----KVRRYLE 53 (55)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHH
Confidence 47889999999944 6 7777664
No 253
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.13 E-value=6.7 Score=21.96 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=18.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
.|..|||+.+|+++ ..+-..+.|.++.|-
T Consensus 32 ~s~~eIA~~lgis~---~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 32 LSYADAAAVCGCPV---GTIRSRVARARDALL 60 (70)
T ss_dssp CCHHHHHHHHTSCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHH
Confidence 47899999999955 422234555555543
No 254
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=58.06 E-value=12 Score=27.93 Aligned_cols=52 Identities=8% Similarity=0.158 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCC
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDI 64 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~ 64 (128)
+-+|.+.+|+ ++. .++=-|.-|+..|.+..... |....|.+|+.++......
T Consensus 48 Li~l~~~~Gi---~~~----avR~Al~RL~~~G~l~~~~~---Gr~~~Y~Lt~~g~~~l~~~ 99 (266)
T 3l09_A 48 LSSFVERMGL---QPQ----AMRVALHRLKRDGWVESRRL---GRVGFHRLSDSALTQTRAV 99 (266)
T ss_dssp HHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHHTT
T ss_pred HHHHHHHcCC---Cch----HHHHHHHHHHHCCCeeeeec---CCcceEEECHHHHHHHHHH
Confidence 4568888899 447 88888888999999976542 1123799999999887654
No 255
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=58.02 E-value=5.6 Score=25.58 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=38.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQA 74 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~ 74 (128)
+|+++||+.+++++ . .|.|+++..+...+-.-- ..+.+..+.++|.... .++......
T Consensus 28 ~sl~~lA~~~~~S~---~----~l~r~fk~~~G~s~~~~l--------~~~Rl~~A~~lL~~~~-~si~~IA~~ 85 (129)
T 1bl0_A 28 LSLEKVSERSGYSK---W----HLQRMFKKETGHSLGQYI--------RSRKMTEIAQKLKESN-EPILYLAER 85 (129)
T ss_dssp CCCHHHHHHSSSCH---H----HHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHCcCHHHHH--------HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 47899999999944 7 899999987655444322 2466777777776432 345555433
No 256
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=57.57 E-value=14 Score=24.36 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcc----cceechHhhhh
Q 045905 10 LPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQE----RSYVATNASKL 59 (128)
Q Consensus 10 ~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~----~~y~~T~~s~~ 59 (128)
-+..+ .+. .|+.+|.-|...|++......+++.+ ..|.+|+.++.
T Consensus 48 ~~~~i-s~g----tlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~ 96 (122)
T 1bm9_A 48 IGFKP-NHT----EVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAA 96 (122)
T ss_dssp TTCCC-CHH----HHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHH
T ss_pred CcccC-Ccc----cHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhh
Confidence 34455 556 89999999999999975542111211 46999998876
No 257
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=57.41 E-value=7.4 Score=24.83 Aligned_cols=26 Identities=27% Similarity=0.043 Sum_probs=21.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVH 33 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~ 33 (128)
+|..|||+.+|++. . .+.|+=|.|-.
T Consensus 59 ~TQREIA~~lGiS~---s----tISRi~r~L~~ 84 (101)
T 1jhg_A 59 MSQRELKNELGAGI---A----TITRGSNSLKA 84 (101)
T ss_dssp SCHHHHHHHHCCCH---H----HHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCh---h----hhhHHHHHHHH
Confidence 47889999999944 7 89999888754
No 258
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=57.12 E-value=15 Score=22.19 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|+.+||.++|++ -. .+.|+|=-|-..|.+...
T Consensus 30 ~Ta~~IAkkLg~s---K~----~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 30 TTAISLSNRLKIN---KK----KINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp ECHHHHHHHTTCC---HH----HHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHCCC---HH----HHHHHHHHHHHCCCEecC
Confidence 4788999999993 36 788888888888977544
No 259
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=56.30 E-value=9.1 Score=32.49 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcce
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFA 38 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~ 38 (128)
+|++||++.+|+++ . .|.|.|..|+..||+.
T Consensus 604 ~t~~ei~~~t~i~~---~----~l~r~L~~l~k~~iL~ 634 (760)
T 1ldj_A 604 YTVQQLTDSTQIKM---D----ILAQVLQILLKSKLLV 634 (760)
T ss_dssp EEHHHHHHHTCCCH---H----HHHHHHHHHHHTTTEE
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHHCCcce
Confidence 47899999999944 7 8999999999999998
No 260
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=55.95 E-value=15 Score=26.28 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=28.4
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|-.|||+++|+ ... .+++-|+.|...|++....
T Consensus 35 se~~La~~~~v---Sr~----tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 35 NETALQEIYSS---SRT----TIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp CHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCc---CHH----HHHHHHHHHHHCCCEEEEC
Confidence 56799999999 447 8999999999999987654
No 261
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=55.89 E-value=15 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=28.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|-.|||++.|+ ... .+++-|+.|...|++....
T Consensus 31 se~~La~~~~v---Sr~----tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 31 VLETLMAQFEV---SKS----TITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp CHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCC---CHH----HHHHHHHHHHHCCcEEEeC
Confidence 56899999999 447 8999999999999997554
No 262
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=54.99 E-value=8.6 Score=26.91 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=28.4
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|-.+||+.+|+ ... .++.-|+.|...|++...+
T Consensus 37 ~e~~La~~lgV---SRt----pVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 37 NVRELSEKLGI---SFT----PVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp CHHHHHHHHTC---CHH----HHHHHHHHHHHHTSEEEET
T ss_pred CHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEeC
Confidence 56799999999 447 8999999999999997654
No 263
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=54.46 E-value=8.5 Score=23.55 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=18.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||+.+++++ .-+-..+.|+++.|-
T Consensus 43 ~s~~eIA~~l~is~---~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 43 LTNKQIADRMFLAE---KTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHc
Confidence 47899999999954 422234555555543
No 264
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=54.28 E-value=9.2 Score=31.53 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHh-----cCcceeeccCCCCcccceechHhhhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVH-----SGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~-----~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+|..+|++.++++ .. .+.|.|+.|.. .|++.... +.|.+++--..+.
T Consensus 445 it~~~la~~l~~s---~~----~~~~~L~~L~~~~~~~~glie~~g-------~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 445 ITIDVVARGLQSG---KE----AARNALEAARQTTVAGAPLIIAHD-------GVWLLGNACREIL 496 (583)
T ss_dssp BCHHHHHHHHTSC---HH----HHHHHHHHHHTCEETTEESEEEET-------TEEEECHHHHHHH
T ss_pred cCHHHHHHHhCcC---HH----HHHHHHHHHHhhhccccceEEEeC-------CEEEECHHHHHHh
Confidence 5789999999994 47 89999999999 78887653 6799998654433
No 265
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=53.99 E-value=12 Score=26.33 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=28.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|-.|||+++|+ ... .++.-|+.|...|++....
T Consensus 33 sE~eLa~~~gV---SR~----tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 33 AERELSELIGV---TRT----TLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp CHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCC---CHH----HHHHHHHHHHHCCcEEEec
Confidence 56799999999 447 8999999999999997654
No 266
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=53.80 E-value=2.1 Score=28.92 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcce
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFA 38 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~ 38 (128)
+|..|||+++|++. . .+++-++.|...|++.
T Consensus 28 ls~~eLa~~lgvSr---~----~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 28 ISNVELSKRVGLSP---T----PCLERVRRLERQGFIQ 58 (163)
T ss_dssp CCTTGGGTSSSCCT---T----TSSSTHHHHHHHTSEE
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHCCcEE
Confidence 46789999999955 6 6778888899999886
No 267
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=52.63 E-value=14 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=28.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|-.|||+++|+ ... .+++-|+.|...|++....
T Consensus 36 se~~La~~~~v---Sr~----tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 36 SEREYAEQFGI---SRM----TVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp CHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEECT
T ss_pred CHHHHHHHHCc---CHH----HHHHHHHHHHHCCcEEEeC
Confidence 56899999999 447 8999999999999997554
No 268
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=52.34 E-value=10 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=17.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWIL 31 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L 31 (128)
.|..|||+.+|+++ ..+-..+.|+++.|
T Consensus 27 ~s~~eIA~~l~is~---~tV~~~~~~~~~kl 54 (74)
T 1fse_A 27 KTTKEIASELFISE---KTVRNHISNAMQKL 54 (74)
T ss_dssp CCHHHHHHHHTSCH---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCH---HHHHHHHHHHHHHH
Confidence 47899999999954 41222344444443
No 269
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=51.06 E-value=12 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.3
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+-.|||+++|+ ... .++.-|+.|...|++...+
T Consensus 53 ~e~~La~~lgV---SRt----pVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 53 SEPDICAALDV---SRN----TVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp CHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEeC
Confidence 56799999999 447 8999999999999997654
No 270
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=50.92 E-value=8.4 Score=22.75 Aligned_cols=22 Identities=14% Similarity=0.142 Sum_probs=17.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|+.|.|+.+|+. .. .|+||.+
T Consensus 17 LTi~EaAeylgIg---~~----~l~~L~~ 38 (70)
T 1y6u_A 17 LTIEEASKYFRIG---EN----KLRRLAE 38 (70)
T ss_dssp EEHHHHHHHTCSC---HH----HHHHHHH
T ss_pred eCHHHHHHHHCcC---HH----HHHHHHH
Confidence 4789999999993 36 6777765
No 271
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=50.30 E-value=8.2 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=28.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+|..|||..+|+++ . .+.-.|+-|+..|++....
T Consensus 179 ~t~~~la~~~~l~~---~----~V~~~l~~L~~~~~v~~~~ 212 (232)
T 2qlz_A 179 ATVEELSDRLNLKE---R----EVREKISEMARFVPVKIIN 212 (232)
T ss_dssp EEHHHHHHHHTCCH---H----HHHHHHHHHTTTSCEEEET
T ss_pred CCHHHHHHHhCcCH---H----HHHHHHHHHHhcCCeEEec
Confidence 36789999999955 7 8899999999999996444
No 272
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=50.19 E-value=8.9 Score=27.89 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=35.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCC-CCcccceechHhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQ-NDQERSYVATNASK 58 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~-~~~~~~y~~T~~s~ 58 (128)
+|-.||++..|+.+ ..++|.|...|++.+....+ .| +-.|+.|+--.
T Consensus 115 ITR~eI~~irGv~~----------~~~v~~Lle~gLI~e~Gr~~~~G-p~ly~tT~~Fl 162 (219)
T 2z99_A 115 VTRARVSAVRGVNV----------DAVMRTLLARGLITEVGTDADTG-AVTFATTELFL 162 (219)
T ss_dssp EEHHHHHHHHTSCC----------HHHHHHHHHTTSEEEEEECTTTC-CEEEEECHHHH
T ss_pred cCHHHHHHHHCCCH----------HHHHHHHHHCCCEEEccccCCCC-CeEEEECHHHH
Confidence 36678999989832 47899999999999875322 23 56788888764
No 273
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=49.82 E-value=9.4 Score=25.18 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=20.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
.|..|||+.+|+.+ . -+.|+-|.|-
T Consensus 76 ~syreIA~~~g~S~---a----TIsRv~r~L~ 100 (119)
T 3kor_A 76 YTYATIEQESGAST---A----TISRVKRSLQ 100 (119)
T ss_dssp CCHHHHHHHHCCCH---H----HHHHHHHHHH
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHHHHh
Confidence 47899999999944 7 7888888764
No 274
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=49.69 E-value=13 Score=24.48 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=20.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||+.+|+++ ..+-..|.|.++.|-
T Consensus 110 ~s~~EIA~~lgis~---~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 110 FSPEDAAYLIEVDT---SEVETLVTEALAEIE 138 (157)
T ss_dssp CCHHHHHHTTTSCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHH
Confidence 58899999999955 323335666666655
No 275
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=49.17 E-value=16 Score=23.25 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=19.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||+.+|+++ ..+-..+.|.++.|-
T Consensus 42 ~s~~EIA~~lgiS~---~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 42 YSLSEIADTFNVSR---QAVYDNIRRTGDLVE 70 (113)
T ss_dssp CCHHHHHHHTTCCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHH
Confidence 48899999999955 422234566555553
No 276
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=49.01 E-value=11 Score=22.26 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=11.8
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|..|||+.+++++
T Consensus 37 ~s~~eIA~~l~is~ 50 (82)
T 1je8_A 37 LPNKMIARRLDITE 50 (82)
T ss_dssp CCHHHHHHHHTSCH
T ss_pred CCHHHHHHHHCcCH
Confidence 47899999999944
No 277
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=48.78 E-value=21 Score=25.73 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=27.5
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
|-.|||++.|+ ... -+++-|+.|+..|++..
T Consensus 38 se~~La~~~~v---Sr~----tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 38 AEREIAEQFEV---ARE----TVRQALRELLIDGRVER 68 (248)
T ss_dssp CHHHHHHHTTC---CHH----HHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCc---CHH----HHHHHHHHHHHCCCEEe
Confidence 56899999999 447 89999999999999977
No 278
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.91 E-value=18 Score=20.70 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=11.8
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|..|||+.+++++
T Consensus 32 ~s~~eIA~~l~is~ 45 (79)
T 1x3u_A 32 LPNKSIAYDLDISP 45 (79)
T ss_dssp CCHHHHHHHTTSCH
T ss_pred CCHHHHHHHHCcCH
Confidence 47899999999954
No 279
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=47.68 E-value=3.9 Score=33.78 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~ 56 (128)
+|-.||++.+++++ . ..+|+|+-|+..|++..... |...+|..|.+
T Consensus 531 it~~di~~l~~ls~---~----qa~~~L~~Lv~~G~l~~~G~---gr~t~Y~~~~~ 576 (583)
T 3lmm_A 531 LATSDLMAMCGVSR---G----TAKACVDGLVDEERVVAVGG---GRSRRYRLVEL 576 (583)
T ss_dssp --------------------------------------------------------
T ss_pred cCHHHHHHHHCCCH---H----HHHHHHHHHHHCCcEEEeCC---CCceEEEEeec
Confidence 46789999999844 6 67999999999999865542 12356888875
No 280
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=47.28 E-value=9.2 Score=21.83 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=18.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWI 30 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~ 30 (128)
++..|+|+.+|++ .. .++|+++.
T Consensus 11 l~~~eva~~lgvs---rs----tiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFG---KT----FIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSC---HH----HHHHHHHH
T ss_pred cCHHHHHHHHCcC---HH----HHHHHHHC
Confidence 4789999999994 47 88888874
No 281
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=47.21 E-value=1.8 Score=32.06 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+-- +-+++.... +--.+-.|.+++..+.|...
T Consensus 4 ~ti~diA~~agVS~---~----TVSrvln~~---~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~ 59 (338)
T 3dbi_A 4 TTMLEVAKRAGVSK---A----TVSRVLSGN---GYVSQETKDRVFQAVEESGYRPNLLARNLSAK 59 (338)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHCCC---CCCCHHHHHHHHHHHHHHCCCcCHHHHHhhhC
Confidence 47899999999955 6 777888752 223322211 00013358899888877654
No 282
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=46.98 E-value=15 Score=23.00 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=11.9
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|+.|||+.+|+++
T Consensus 40 ~s~~EIA~~lgiS~ 53 (99)
T 3t72_q 40 YTLEEVGKQFDVTR 53 (99)
T ss_pred CCHHHHHHHHCcCH
Confidence 48899999999955
No 283
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=46.61 E-value=14 Score=20.79 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=16.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 22 lsq~~lA~~~gis~---~----~is~~e~ 43 (73)
T 3omt_A 22 KTNLWLTETLDKNK---T----TVSKWCT 43 (73)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47789999999843 6 6666655
No 284
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.16 E-value=13 Score=23.39 Aligned_cols=33 Identities=3% Similarity=-0.074 Sum_probs=28.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
+..||..+++++. . .+.|+|+.|-..|++....
T Consensus 55 w~kdL~~~tnL~~---~----~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 55 WSRDVRYKSNLPL---T----EINKILKNLESKKLIKAVK 87 (95)
T ss_dssp EHHHHHHHHTCCH---H----HHHHHHHHHHHHTSEEEEC
T ss_pred CHHHHHHHhCCCH---H----HHHHHHHHHHhCCCEEEec
Confidence 4579999999944 7 8999999999999998765
No 285
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.30 E-value=8.3 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=17.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWIL 31 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L 31 (128)
+|..|||+.+++++ .-+-..+.|+++.|
T Consensus 45 ~s~~eIA~~l~is~---~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 45 YSNQEIASASHITI---KTVKTHVSNILSKL 72 (91)
T ss_dssp CCTTHHHHHHTCCH---HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHH
Confidence 47889999999954 42222455555543
No 286
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.18 E-value=18 Score=24.02 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=33.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+|+.|+|+.+|+++ +-||+--..|++...... +++-+.|....+-++
T Consensus 3 ~~I~e~A~~~gvs~-----------~tLR~Ye~~GLl~p~~r~-~~g~R~Y~~~dl~~l 49 (142)
T 3gp4_A 3 LNIKEASEKSGVSA-----------DTIRYYERIGLIPPIHRN-ESGVRKFGAEDLRWI 49 (142)
T ss_dssp BCHHHHHHHHTSCH-----------HHHHHHHHHTSSCCCCBC-TTSCBCBCHHHHHHH
T ss_pred CcHHHHHHHHCcCH-----------HHHHHHHHCCCCCCCcCC-CCCCeeeCHHHHHHH
Confidence 47899999999954 457888888999763322 222467887777643
No 287
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=44.93 E-value=9.2 Score=22.20 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=10.8
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+.|||..+|+.
T Consensus 10 ~t~~diA~~aGVS 22 (67)
T 2l8n_A 10 ATMKDVALKAKVS 22 (67)
T ss_dssp CCHHHHHHHTTCC
T ss_pred CCHHHHHHHHCCC
Confidence 4789999999983
No 288
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=44.89 E-value=1.7 Score=32.46 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+-. +-+++.... +--.+-.|.+++..+.|...
T Consensus 13 ~ti~diA~~agVS~---~----TVSr~Ln~~---~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~ 68 (355)
T 3e3m_A 13 VTMRDVAKAAGVSR---M----TVSRALKKD---SPISSETRERILKVVKDMNYVPDQVAGSLTTK 68 (355)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcHHHHHHHhCCCH---H----HHHHHHCCC---CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcC
Confidence 47899999999954 6 777888753 222222110 00013458888888877654
No 289
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=44.44 E-value=16 Score=25.49 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
-.+||+++|+ ... .++.-|+.|...|++....
T Consensus 42 E~~La~~lgV---SRt----pVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 42 ETDLVAHFGV---GRN----SVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp HHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEec
Confidence 4789999999 447 8999999999999997654
No 290
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=44.12 E-value=21 Score=26.20 Aligned_cols=33 Identities=6% Similarity=0.100 Sum_probs=28.1
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|-.|||+++|+ ... .+++-|+.|+..|++....
T Consensus 55 se~~La~~~~v---Sr~----tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 55 SQARIREEYGV---SDT----VALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp CHHHHHHHHTC---CHH----HHHHHHHHHHHTTSEEECC
T ss_pred CHHHHHHHHCC---CHH----HHHHHHHHHHHCCCEEEec
Confidence 56899999999 447 8999999999999986554
No 291
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=43.63 E-value=19 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=18.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||+.+++++ .-+-..+.|+++-|-
T Consensus 50 ~s~~EIA~~L~iS~---~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 50 FLVTEIAKKLNRSI---KTISSQKKSAMMKLG 78 (99)
T ss_dssp CCHHHHHHHHTSCH---HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHC
Confidence 47899999999954 422234666666543
No 292
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=43.49 E-value=18 Score=22.61 Aligned_cols=47 Identities=9% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+|..|+|+.+|+++ +-+|+-...|++...... +++-+.|....+-++
T Consensus 3 ~~i~e~A~~~gvs~-----------~tLR~ye~~Gll~p~~~~-~~g~R~Y~~~dl~~l 49 (109)
T 1r8d_A 3 YQVKQVAEISGVSI-----------RTLHHYDNIELLNPSALT-DAGYRLYSDADLERL 49 (109)
T ss_dssp BCHHHHHHHHSCCH-----------HHHHHHHHTTSSCCSEEC-TTCCEEBCHHHHHHH
T ss_pred ccHHHHHHHHCcCH-----------HHHHHHHHCCCCCCCeEC-CCCCeeeCHHHHHHH
Confidence 47899999999954 346777778998653311 122467888777643
No 293
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=43.23 E-value=17 Score=23.42 Aligned_cols=25 Identities=12% Similarity=-0.040 Sum_probs=20.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
.|+.||++.+|+.. . -+.|+-|.|-
T Consensus 59 ~SyreIa~~tG~St---a----TIsRv~r~L~ 83 (107)
T 3frw_A 59 RTYLDISEKTGAST---A----TISRVNRSLN 83 (107)
T ss_dssp CCHHHHHHHHCCCH---H----HHHHHHHHHH
T ss_pred CCHHHHHHHHCccH---H----HHHHHHHHHH
Confidence 47899999999943 6 7888888775
No 294
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.01 E-value=12 Score=20.27 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=15.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 15 ~s~~~lA~~~gis~---~----~i~~~e~ 36 (66)
T 2xi8_A 15 ISQSELAALLEVSR---Q----TINGIEK 36 (66)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47788999999843 6 6666654
No 295
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=42.47 E-value=1.8 Score=32.13 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+- .+-+++.... +--.+-.|.+++..+.|...
T Consensus 7 ~ti~diA~~agVS~---~----TVSr~Ln~---~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~ 62 (333)
T 3jvd_A 7 SSLKEVAELAGVGY---A----TASRALSG---KGYVSPQTREKVQAAAKELNYVPNQLAKALREH 62 (333)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHcC---CCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcC
Confidence 47899999999954 6 67788773 2323322210 00012358888888777654
No 296
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=42.47 E-value=12 Score=22.37 Aligned_cols=27 Identities=0% Similarity=-0.188 Sum_probs=20.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHS 34 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~ 34 (128)
.|+.+||..+|+++ . .|+|.++..-..
T Consensus 39 ~s~~~iA~~~gIs~---s----Tl~rW~k~~~~~ 65 (87)
T 2elh_A 39 ESKASVARDIGVPE---S----TLRGWCKNEDKL 65 (87)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHhc
Confidence 47889999999944 7 899988765443
No 297
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=42.15 E-value=26 Score=25.70 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
+-+|.+.+|+ ++. .++=-|--|+..|.+.... .| |.+|+-++...
T Consensus 26 Li~l~~~~Gi---~e~----avRtAlsRL~~~G~L~~~~------~G-Y~LT~~~~~~~ 70 (247)
T 3kfw_X 26 LIQLTADFGI---KET----TLRVALTRMVGAGDLVRSA------DG-YRLSDRLLARQ 70 (247)
T ss_dssp HHHHHTTTTC---CHH----HHHHHHHHHHHTTSEEEET------TE-EEECHHHHHHH
T ss_pred HHHHHHHcCC---ChH----HHHHHHHHHHHcCCeeccC------Cc-eeeCHHHHHHH
Confidence 4466677778 447 7777777788899997654 34 99999886543
No 298
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=42.08 E-value=19 Score=24.02 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+|+.|+|+.+|+++ +-||+--..|++....... ++-+.|....+-++
T Consensus 5 ~tI~evA~~~Gvs~-----------~tLR~ye~~GLl~p~~r~~-~g~R~Y~~~dl~~l 51 (146)
T 3hh0_A 5 WLISEFASVGDVTV-----------RALRYYDKINLLKPSDYTE-GGHRLYTKDDLYVL 51 (146)
T ss_dssp BCHHHHHHHHTCCH-----------HHHHHHHHTTSSCCSEECT-TSCEEBCHHHHHHH
T ss_pred CcHHHHHHHHCcCH-----------HHHHHHHHCCCCCCCeECC-CCCEeeCHHHHHHH
Confidence 47899999999954 4688888999997542211 22467887777543
No 299
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=41.96 E-value=2.2 Score=31.53 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+-. +-+++.... +--.+-.|.+++..+.|...
T Consensus 3 ~ti~diA~~agVS~---~----TVSrvln~~---~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~ 58 (330)
T 3ctp_A 3 ANIREIAKRAGISI---A----TVSRHLNNT---GYVSEDAREKIQKVVDELNYTPNALARAMFTK 58 (330)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCcCHHHHHhhcC
Confidence 47899999999954 6 788888864 223332210 00002348888888877654
No 300
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.83 E-value=24 Score=23.54 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=32.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+++.|+|+.+|+++ +-||+--..|++......+ ++-+.|....+-++
T Consensus 17 ~~I~evA~~~gvs~-----------~tLR~Ye~~Gll~p~~r~~-~g~R~Y~~~dl~~l 63 (148)
T 3gpv_A 17 YTIGQVAKMQHLTI-----------SQIRYYDKQGLFPFLQRNE-KGDRIFNEEALKYL 63 (148)
T ss_dssp BCHHHHHHHTTCCH-----------HHHHHHHHTTCCTTCEECT-TCCEEBCHHHHHHH
T ss_pred eeHHHHHHHHCcCH-----------HHHHHHHHCCCCCCCcCCC-CCCeecCHHHHHHH
Confidence 36899999999944 5688889999996432211 22467887777654
No 301
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=41.79 E-value=22 Score=23.28 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+|..|+|+.+|+++ +-+|+--..|++....... ++-+.|....+-++
T Consensus 1 ~~I~e~A~~~gvs~-----------~tLR~ye~~Gll~p~~r~~-~g~R~Y~~~dl~~l 47 (135)
T 1q06_A 1 MNISDVAKITGLTS-----------KAIRFYEEKGLVTPPMRSE-NGYRTYTQQHLNEL 47 (135)
T ss_dssp CCHHHHHHHHTCCH-----------HHHHHHHHTTCSCCCEECT-TSCEECCHHHHHHH
T ss_pred CCHHHHHHHHCcCH-----------HHHHHHHHCCCCCCCccCC-CCCeeeCHHHHHHH
Confidence 58899999999954 4577888899997542211 22456777776643
No 302
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=41.44 E-value=34 Score=21.84 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=25.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+|..++...+.- |.. .+.||.++|...|+..-
T Consensus 68 LT~t~~r~~l~g---Dv~----~i~RVh~FLe~wGLIN~ 99 (104)
T 2fq3_A 68 FSVTTARRNVSG---DAA----ALFRLHKFLTKWGLINY 99 (104)
T ss_dssp CCHHHHHHHSCS---CHH----HHHHHHHHHHHTTSSSS
T ss_pred eeHHHHHHHccc---cHH----HHHHHHHHHHHcCeecc
Confidence 466677766643 668 99999999999999864
No 303
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=41.25 E-value=2.2 Score=31.90 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+-.- -+++.... +--.+-.|.+++..+.|...
T Consensus 4 ~ti~diA~~aGVS~---~----TVSrvLn~~~---~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~ 59 (349)
T 1jye_A 4 VTLYDVAEYAGVSY---Q----TVSRVVNQAS---HVSAKTREKVEAAMAELNYIPNRVAQQLAGK 59 (349)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHcCCC---CCCHHHHHHHHHHHHHHCCCcCHHHHHhhcC
Confidence 47899999999955 6 7888888653 12222110 00013358888888777644
No 304
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=40.96 E-value=18 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=26.7
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCccee
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQ 39 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e 39 (128)
+-.|||+++|+ ... .++.-|+.|...|++..
T Consensus 30 sE~~La~~lgV---SRt----pVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 30 SERALSETLGV---SRS----SLREALRVLEALGTIST 60 (239)
T ss_dssp CHHHHHHHHTC---CHH----HHHHHHHHHHHHTSEEC
T ss_pred CHHHHHHHHCC---CHH----HHHHHHHHHHHCCCeEe
Confidence 34689999999 447 89999999999999976
No 305
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=40.39 E-value=5.9 Score=29.33 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCHHHHHHhC-CCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechH
Q 045905 1 MTLNELINAL-PFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATN 55 (128)
Q Consensus 1 ~S~~eLA~~~-~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~ 55 (128)
++.+||++++ +++. . .++..+..|+..|.+-.+-+ +..|..|.
T Consensus 225 i~~~~I~~~l~~~~~---~----~v~~al~~L~~eG~IYsTiD-----d~h~k~t~ 268 (270)
T 2pi2_A 225 LNFQDLKNQLKHMSV---S----SIKQAVDFLSNEGHIYSTVD-----DDHFKSTD 268 (270)
T ss_dssp --------------------------------------------------------
T ss_pred CCHHHHHHHhcCCCH---H----HHHHHHHHHHhCCEEecccc-----ccceeecc
Confidence 4677899888 4643 6 78899999999997755432 45777664
No 306
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.14 E-value=1.9 Score=31.99 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+-- +-+++.... +--.+-.|.+++..+.|...
T Consensus 5 ~ti~diA~~agVS~---~----TVSr~Ln~~---~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~ 60 (339)
T 3h5o_A 5 VTMHDVAKAAGVSA---I----TVSRVLNQP---QQVSEQLREKVMQAVDALAYVPSRSASTLASA 60 (339)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcC
Confidence 47899999999954 6 677888642 222222110 00012358888888777644
No 307
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.00 E-value=19 Score=21.83 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=18.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWIL 31 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L 31 (128)
+|..|||..+++.+ .-+-..+.|+++-|
T Consensus 45 ~s~~eIA~~L~iS~---~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 45 FTNQEIADALHLSK---RSIEYSLTSIFNKL 72 (90)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHH
Confidence 47899999999954 42233455555544
No 308
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=39.80 E-value=14 Score=21.37 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=16.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|++ .. .|.++.+
T Consensus 24 ltq~elA~~~gis---~~----~is~~E~ 45 (78)
T 3qq6_A 24 YSLSELAEKAGVA---KS----YLSSIER 45 (78)
T ss_dssp CCHHHHHHHHTCC---HH----HHHHHHT
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHc
Confidence 5788999999983 36 6776655
No 309
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=39.44 E-value=34 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.1
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
|..|||+++|+. ... .+.+.++.|...|.+...
T Consensus 27 s~~elA~~lgis--s~~----tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 27 TRAEIAQRLGFR--SPN----AAEEHLKALARKGVIEIV 59 (202)
T ss_dssp CHHHHHHHTTCS--SHH----HHHHHHHHHHHTTSEEEC
T ss_pred cHHHHHHHhCCC--ChH----HHHHHHHHHHHCCCceeC
Confidence 789999999994 036 788999999988877543
No 310
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=39.36 E-value=11 Score=25.80 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=17.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|+.|+|+.+|++. . .+++++|
T Consensus 32 LTv~EVAe~LgVs~---s----rV~~LIr 53 (148)
T 2kfs_A 32 YDLPRVAELLGVPV---S----KVAQQLR 53 (148)
T ss_dssp EEHHHHHHHHTCCH---H----HHHHHHH
T ss_pred EcHHHHHHHhCCCH---H----HHHHHHH
Confidence 47899999999943 6 6777666
No 311
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=39.23 E-value=25 Score=26.82 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=27.6
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|++||.+.+++ ... .+..++..|...|++....
T Consensus 53 tl~ei~~~l~~---~~~----~v~~~i~~L~~~g~l~~~~ 85 (353)
T 3h5n_A 53 SYTAALETANI---PEK----DFSNCFRFLKENFFIIPGE 85 (353)
T ss_dssp CHHHHHTTCCS---CHH----HHHHHHHHHHHTTSEEEGG
T ss_pred CHHHHHHHcCC---CHH----HHHHHHHHHHHCCCEeeCC
Confidence 78899999887 346 8999999999999887543
No 312
>1zrv_A Spinigerin; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic} PDB: 1zrw_A
Probab=39.13 E-value=15 Score=17.15 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=7.0
Q ss_pred HHHHHHHHh
Q 045905 25 YRFMWILVH 33 (128)
Q Consensus 25 ~RlLR~L~~ 33 (128)
-||||.|+.
T Consensus 16 lrimrlltr 24 (26)
T 1zrv_A 16 LRIMRLLTR 24 (26)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 488998874
No 313
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=39.12 E-value=21 Score=24.19 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhh
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLL 61 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~ 61 (128)
.+++.|+.|...|++.... .+.+..|+.+.-.+
T Consensus 97 tVR~AL~~Le~~GlV~~~~------~~G~~Vt~~~~~~l 129 (150)
T 2v7f_A 97 IIRKALQQLEAAGFVEKVP------GKGRVITPKGRSFL 129 (150)
T ss_dssp HHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeC------CCceEECCCCHHHH
Confidence 6999999999999997654 23355667665444
No 314
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=38.87 E-value=28 Score=19.11 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=15.5
Q ss_pred CCHHHHHHhCC--CCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALP--FHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~--~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++| +++ . .+.++.+
T Consensus 22 lsq~~lA~~~g~~is~---~----~i~~~e~ 45 (71)
T 2ewt_A 22 LSLHGVEEKSQGRWKA---V----VVGSYER 45 (71)
T ss_dssp CCHHHHHHHTTTSSCH---H----HHHHHHH
T ss_pred CCHHHHHHHHCCcCCH---H----HHHHHHC
Confidence 47788999999 733 5 6666655
No 315
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=38.16 E-value=16 Score=19.88 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=15.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 19 ~s~~~lA~~~gis~---~----~i~~~e~ 40 (68)
T 2r1j_L 19 IRQAALGKMVGVSN---V----AISQWER 40 (68)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHc
Confidence 47788999999843 6 6666654
No 316
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=38.15 E-value=16 Score=20.14 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=16.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 17 lsq~~lA~~~gis~---~----~i~~~e~ 38 (71)
T 1zug_A 17 MTQTELATKAGVKQ---Q----SIQLIEA 38 (71)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHc
Confidence 47789999999843 6 6777664
No 317
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=38.10 E-value=22 Score=22.20 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=31.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+|..|+|+.+|+++ +-+|+--..|++...... +++-+.|....+-++
T Consensus 2 ~~i~e~A~~~gvs~-----------~tLR~ye~~Gll~p~~r~-~~g~R~Y~~~dl~~l 48 (108)
T 2vz4_A 2 YSVGQVAGFAGVTV-----------RTLHHYDDIGLLVPSERS-HAGHRRYSDADLDRL 48 (108)
T ss_dssp BCHHHHHHHHTCCH-----------HHHHHHHHHTSSCCSEEC-SSCCEEBCHHHHHHH
T ss_pred CCHHHHHHHHCcCH-----------HHHHHHHHCCCCCCCccC-CCCCeecCHHHHHHH
Confidence 47899999999954 446777778999654311 122467887776643
No 318
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=37.59 E-value=9.9 Score=26.24 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=31.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCC-CCcccceechHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQ-NDQERSYVATNA 56 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~-~~~~~~y~~T~~ 56 (128)
+|-.||++..|++ .+.++|.|...|++.+....+ .|.+-.|+.|+.
T Consensus 109 iTR~eI~~irGv~----------~~~~v~~L~e~glI~e~g~~~~~GRp~ly~tT~~ 155 (162)
T 1t6s_A 109 VTKGEIQQIRGAS----------PDYSIDRLLARGLIEVRGRADSPGRPLQYGTTEV 155 (162)
T ss_dssp EEHHHHHHHHTCC----------CCSHHHHHHHTTSEEEEEECSSTTCCEEEEECHH
T ss_pred cCHHHHHHHHCCC----------HHHHHHHHHHCCCEEEccccCCCCCCeEEEECHH
Confidence 3567888888883 235699999999999865322 222346888875
No 319
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=37.59 E-value=16 Score=20.41 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=15.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 19 ls~~~lA~~~gis~---~----~i~~~e~ 40 (76)
T 1adr_A 19 IRQAALGKMVGVSN---V----AISQWER 40 (76)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47788899888833 6 6666654
No 320
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=37.56 E-value=16 Score=20.83 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=15.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|++. . .+.|+.+
T Consensus 16 lsq~~lA~~~gis~---~----~i~~~e~ 37 (77)
T 2k9q_A 16 LTAKSVAEEMGISR---Q----QLCNIEQ 37 (77)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHc
Confidence 47788999998833 5 5666543
No 321
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=37.38 E-value=16 Score=19.91 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=16.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||..+|+++ . .+.++.+
T Consensus 15 lsq~~lA~~~gis~---~----~i~~~e~ 36 (69)
T 1r69_A 15 LNQAELAQKVGTTQ---Q----SIEQLEN 36 (69)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47789999999843 6 6777654
No 322
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=37.05 E-value=21 Score=20.59 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=16.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 26 lsq~~lA~~~gis~---~----~i~~~e~ 47 (88)
T 2wiu_B 26 WTQSELAKKIGIKQ---A----TISNFEN 47 (88)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHH
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHc
Confidence 47789999999843 6 6666665
No 323
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.61 E-value=15 Score=20.67 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=15.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 21 ~sq~~lA~~~gis~---~----~i~~~e~ 42 (78)
T 3b7h_A 21 LTINRVATLAGLNQ---S----TVNAMFE 42 (78)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47788999988843 6 6666654
No 324
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=36.46 E-value=53 Score=19.03 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCHHHHHHhCCCCC--CCchhhhhhHHHHHHHHHhcCcc
Q 045905 1 MTLNELINALPFHP--IKAQYVAQYVYRFMWILVHSGFF 37 (128)
Q Consensus 1 ~S~~eLA~~~~~~~--~~~~~~~~~L~RlLR~L~~~gvf 37 (128)
+|++||...++-.. -++. .+..++..|...||=
T Consensus 24 lTy~EI~d~l~~~~~~ld~e----~id~i~~~L~~~gI~ 58 (72)
T 2k6x_A 24 ITYEDIDKAFPPDFEGFDTN----LIERIHEELEKHGIN 58 (72)
T ss_dssp CBHHHHHHHCSCSCSSCCHH----HHHHHHHHHHHTCCC
T ss_pred ccHHHHHHhCccccccCCHH----HHHHHHHHHHHCCCc
Confidence 57889988877432 3556 899999999999963
No 325
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=36.46 E-value=16 Score=19.12 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.4
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCc
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGF 36 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gv 36 (128)
++.|||..+|+ ...+++-.|...|+
T Consensus 4 rv~~lAkel~~----------~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQT----------SVERLVQQFADAGI 28 (49)
T ss_dssp CTTHHHHHHSS----------SHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCc----------CHHHHHHHHHHcCC
Confidence 56799999998 34488888888998
No 326
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=36.41 E-value=24 Score=20.22 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=15.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|-.|||+++|+++ . .+.++.+
T Consensus 26 ltq~~lA~~~gvs~---~----~is~~e~ 47 (80)
T 3kz3_A 26 LSYESVADKMGMGQ---S----AVAALFN 47 (80)
T ss_dssp CCHHHHHHHTTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHhCcCH---H----HHHHHHc
Confidence 46788999999833 5 5666554
No 327
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=36.27 E-value=18 Score=20.32 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=15.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 24 lsq~~lA~~~gis~---~----~i~~~e~ 45 (77)
T 2b5a_A 24 VSQEELADLAGLHR---T----YISEVER 45 (77)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHC
Confidence 47788999999843 6 6666654
No 328
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=36.13 E-value=16 Score=26.27 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=38.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQA 74 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~ 74 (128)
+|+++||+.+++++ . .|.|+.+..+...+-.-- ...++..+.++|.... .++......
T Consensus 20 ~~~~~la~~~~~s~---~----~l~r~f~~~~g~s~~~~~--------~~~Rl~~a~~~L~~~~-~~i~~ia~~ 77 (292)
T 1d5y_A 20 LSLDNVAAKAGYSK---W----HLQRMFKDVTGHAIGAYI--------RARRLSKSAVALRLTA-RPILDIALQ 77 (292)
T ss_dssp CCCHHHHTTTSSCH---H----HHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHCcCHHHHH--------HHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 47899999999954 7 899998877655544332 3466777777776432 345554433
No 329
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=36.04 E-value=10 Score=22.33 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=14.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRF 27 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~Rl 27 (128)
+|..|||.++|+++ . .|.++
T Consensus 23 lT~~~LA~~~Gvs~---s----tls~~ 42 (74)
T 1neq_A 23 LSLSALSRQFGYAP---T----TLANA 42 (74)
T ss_dssp CCHHHHHHHHSSCH---H----HHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHH
Confidence 58899999999843 5 56654
No 330
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=35.86 E-value=17 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=15.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||+++|+++ . .+.|+.+
T Consensus 32 lsq~elA~~~gis~---~----~is~~e~ 53 (83)
T 2a6c_A 32 LTQFKAAELLGVTQ---P----RVSDLMR 53 (83)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47788999999833 5 5666554
No 331
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=35.56 E-value=19 Score=19.99 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=15.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 27 ~s~~~lA~~~gis~---~----~i~~~e~ 48 (74)
T 1y7y_A 27 LSQETLAFLSGLDR---S----YVGGVER 48 (74)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHC
Confidence 47788999988843 6 6666654
No 332
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.33 E-value=25 Score=22.35 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=18.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||+.+|+++ ..+-..+.|.++.|-
T Consensus 39 ~s~~EIA~~lgiS~---~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 39 YSLAEIADEFGVSR---QAVYDNIKRTEKILE 67 (113)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHH
Confidence 47899999999955 422224555555443
No 333
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=35.33 E-value=19 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=20.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVH 33 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~ 33 (128)
.|+.+||..+|+++ . .|+|-++..-.
T Consensus 24 ~s~~~ia~~~gIs~---~----tl~rW~~~~~~ 49 (97)
T 2jn6_A 24 ASLQQIANDLGINR---V----TLKNWIIKYGS 49 (97)
T ss_dssp SCHHHHHHHHTSCH---H----HHHHHHHHHCC
T ss_pred ChHHHHHHHHCcCH---H----HHHHHHHHHhh
Confidence 47889999999944 7 89998876443
No 334
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=35.25 E-value=29 Score=26.44 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=28.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
++..+||+++++.. .+. -+||-|..|-..|++...-
T Consensus 37 V~s~~La~~~~l~V-S~a----TIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 37 VSSQRVLEVSNIEF-SSA----TIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp BCHHHHHHHSCCCS-CHH----HHHHHHHHHHHTTSEECCS
T ss_pred ccHHHHHHHhCCCC-CHH----HHHHHHHHHHHCCCEEEcc
Confidence 36789999993322 447 8999999999999998653
No 335
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=34.70 E-value=17 Score=30.83 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=27.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH--hcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV--HSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~--~~gvf~e~ 40 (128)
+|++||++.+++++ . .|.|.|..|+ ..+|+...
T Consensus 608 lt~~ei~~~t~i~~---~----~l~r~L~sL~~~k~~vL~~~ 642 (759)
T 2hye_C 608 FSFEEIKMATGIED---S----ELRRTLQSLACGKARVLIKS 642 (759)
T ss_dssp EEHHHHHHHTCCCH---H----HHHHHHHTTTTTTTCSEEET
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHHHHccCCceeecC
Confidence 37899999999944 7 8999999998 47888753
No 336
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=34.43 E-value=10 Score=21.64 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=31.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|..|+|+.+|+++ . .|+|..+. |+ -.......+...+|....+=.+|...
T Consensus 3 lt~~e~a~~LgvS~---~----Tl~rw~~~----G~-P~~~~~g~~~~~~y~~~dv~~wl~~~ 53 (68)
T 1j9i_A 3 VNKKQLADIFGASI---R----TIQNWQEQ----GM-PVLRGGGKGNEVLYDSAAVIKWYAER 53 (68)
T ss_dssp EEHHHHHHHTTCCH---H----HHHHHTTT----TC-CCSSCCCSSSCCEEEHHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCH---H----HHHHHHHC----CC-CeEeeCCCcceEEECHHHHHHHHHHC
Confidence 46789999999944 6 77777653 65 22111010113468888888777543
No 337
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=33.92 E-value=24 Score=22.14 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHhcCcc
Q 045905 19 YVAQYVYRFMWILVHSGFF 37 (128)
Q Consensus 19 ~~~~~L~RlLR~L~~~gvf 37 (128)
+.||+|+.+|-.|+..||=
T Consensus 67 E~ADLlYHllVlL~~~gv~ 85 (93)
T 1y6x_A 67 EISQLLYWTQVLMISRGLS 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 5788999999999999873
No 338
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=33.59 E-value=20 Score=20.57 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=15.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 28 ltq~elA~~~gis~---~----~is~~e~ 49 (83)
T 3f6w_A 28 ITQKELAARLGRPQ---S----FVSKTEN 49 (83)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHC
Confidence 47789999999833 6 6666654
No 339
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.53 E-value=21 Score=19.93 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=15.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 24 ~s~~~lA~~~gis~---~----~i~~~e~ 45 (76)
T 3bs3_A 24 RTNRWLAEQMGKSE---N----TISRWCS 45 (76)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 46788888888843 5 6666554
No 340
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=33.49 E-value=31 Score=20.31 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=17.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
.++.|||..+++ +.. .+.++|+.+-
T Consensus 49 ~~l~eia~~l~~---~~~----eve~vL~~lQ 73 (76)
T 2k9l_A 49 KSVEEISDVLRC---SVE----ELEKVRQKVL 73 (76)
T ss_dssp CCHHHHHHHHTS---CHH----HHHHHHHHHH
T ss_pred CCHHHHHHHcCC---CHH----HHHHHHHHHh
Confidence 368899999998 336 5666666543
No 341
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.13 E-value=3 Score=30.93 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|+.|||++.|++. . -+.|.|+
T Consensus 11 ~ti~diA~~agVS~---~----TVSr~Ln 32 (344)
T 3kjx_A 11 LTLRDVSEASGVSE---M----TVSRVLR 32 (344)
T ss_dssp CCHHHHHHHHCCCS---H----HHHHHHT
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHc
Confidence 47899999999954 5 6666664
No 342
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=33.09 E-value=11 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=5.0
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeec
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|-.|||+++|++. . .+++-|+.|...|++....
T Consensus 42 se~~La~~~~vSr---~----tvr~Al~~L~~~G~i~~~~ 74 (247)
T 2ra5_A 42 NEIELAARLGLSR---P----TVRQAIQSLVDKGLLVRRR 74 (247)
T ss_dssp ---------------------------------CEEEEEC
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHHHHCCCEEEEc
Confidence 5679999999943 6 7999999999999986554
No 343
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=33.04 E-value=35 Score=19.97 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhc-CcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHS-GFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~-gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+|..|+|+.+|+++ . -+|+-... |++..... .+++-+.|....+-++
T Consensus 6 ~~i~e~A~~~gvs~---~--------tlR~ye~~~gl~~p~r~-~~~g~R~Y~~~dl~~l 53 (81)
T 2jml_A 6 LRIRTIARMTGIRE---A--------TLRAWERRYGFPRPLRS-EGNNYRVYSREEVEAV 53 (81)
T ss_dssp EEHHHHHHTTSTTH---H--------HHHHHHHHTCCSCCBSS-SCSSSCEECHHHHHHH
T ss_pred ccHHHHHHHHCcCH---H--------HHHHHHHhCCCCCCcCC-CCCCeeecCHHHHHHH
Confidence 36789999999954 3 45666664 77754321 1022467888777643
No 344
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=32.98 E-value=21 Score=21.62 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=16.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||+++|+++ . .|.|+.+
T Consensus 38 lTq~eLA~~~GiS~---~----tis~iE~ 59 (88)
T 3t76_A 38 MKKGELREAVGVSK---S----TFAKLGK 59 (88)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 57889999999843 6 6666655
No 345
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.73 E-value=27 Score=20.62 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=16.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.++.+
T Consensus 22 ltq~~lA~~~gis~---~----~is~~e~ 43 (94)
T 2ict_A 22 VSLREFARAMEIAP---S----TASRLLT 43 (94)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHH
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHc
Confidence 47789999999944 6 7777766
No 346
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=32.58 E-value=22 Score=20.38 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=15.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 25 lsq~~lA~~~gis~---~----~i~~~e~ 46 (82)
T 3s8q_A 25 MTQEDLAYKSNLDR---T----YISGIER 46 (82)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHhCcCH---H----HHHHHHC
Confidence 57788999999843 6 6666654
No 347
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=32.54 E-value=37 Score=23.64 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=32.1
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHh---cCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVH---SGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~---~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
|+..-|+++++. .+ .|.|-++.|=. .-+|.... +.+.+|+.|+.|...
T Consensus 17 s~s~AA~~L~is---q~----avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~ 67 (294)
T 1ixc_A 17 NMAAAAKRLHVS---QP----PITRQMQALEADLGVVLLERSH-------RGIELTAAGHAFLED 67 (294)
T ss_dssp SHHHHHHHHTCC---HH----HHHHHHHHHHHHHTSCCBC------------CCBCHHHHHHHHH
T ss_pred CHHHHHHHhCCC---cc----hHHHHHHHHHHHHCCEEEEeCC-------CCeeECHhHHHHHHH
Confidence 566778889983 36 67777776643 36887553 679999999999753
No 348
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=32.52 E-value=20 Score=22.30 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=17.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWI 30 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~ 30 (128)
+|+.|||..+|+++ . .++|.|..
T Consensus 21 ~ti~dlA~~~gVS~---~----TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSK---S----TVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHTT
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHcC
Confidence 57899999999943 6 77777653
No 349
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=32.35 E-value=28 Score=22.73 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHHhcCcce
Q 045905 19 YVAQYVYRFMWILVHSGFFA 38 (128)
Q Consensus 19 ~~~~~L~RlLR~L~~~gvf~ 38 (128)
+.||+||.+|-.|+..||=-
T Consensus 63 E~ADLlYHllVlL~~~gv~l 82 (116)
T 2a7w_A 63 EVADLWFHTMVLLTYHGLRP 82 (116)
T ss_dssp HHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 57889999999999999743
No 350
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=31.90 E-value=48 Score=23.38 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=35.5
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHh---cCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVH---SGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~---~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
|+..-|+++++. ++ .|.|-++.|=. .-+|.... +...+|+.|+.|...
T Consensus 26 s~s~AA~~L~is---q~----avS~~I~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~ 76 (310)
T 2esn_A 26 NVGTAASELAIS---AS----AFSHALGRLRQGLDDELFLRQG-------NRMQPTQRAEHLAAA 76 (310)
T ss_dssp SHHHHHHHHTCC---HH----HHHHHHHHHHHHHTSCCEEEET-------TEEEECHHHHHHHHH
T ss_pred CHHHHHHHhCCC---hH----HHHHHHHHHHHhhCCcceeecC-------CCccccHHHHHHHHH
Confidence 566778899983 36 77777777754 45887664 679999999988753
No 351
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=31.73 E-value=42 Score=21.02 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=18.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFF 37 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf 37 (128)
.|+.+|+..+|+.. ... .++|+|+. .|++
T Consensus 78 ~s~~~i~~~lg~~~-s~~----tV~r~l~~---~g~~ 106 (141)
T 1u78_A 78 KTARDIRNELQLSA-SKR----TILNVIKR---SGVI 106 (141)
T ss_dssp CCHHHHHHHTTCCS-CHH----HHHHHHHH---TC--
T ss_pred CCHHHHHHHHCCCc-cHH----HHHHHHHH---CCCc
Confidence 47889999998633 445 67777764 5764
No 352
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=31.66 E-value=30 Score=21.89 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHhcCcc
Q 045905 19 YVAQYVYRFMWILVHSGFF 37 (128)
Q Consensus 19 ~~~~~L~RlLR~L~~~gvf 37 (128)
+.||+||.+|-.|+..||=
T Consensus 64 E~ADLlYHllVlL~~~gv~ 82 (98)
T 1yxb_A 64 EISQLLYHVQVMMVARGIS 82 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 5788999999999999874
No 353
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=31.07 E-value=29 Score=19.02 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=16.9
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
|..++|+++|+.+ . .+.+++|
T Consensus 15 s~~~~A~~lgis~---~----~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQ---S----AISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCH---H----HHHHHHH
T ss_pred CHHHHHHHHCcCH---H----HHHHHHc
Confidence 5789999999944 7 7888885
No 354
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=30.86 E-value=40 Score=24.51 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASK 58 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~ 58 (128)
+|+.|+|..+|+++ |-||+=-..|++.......+ +-+.|....+-+
T Consensus 4 ~tI~evA~~~gvs~-----------~TLRyYe~~GLL~p~~~~~~-GyR~Y~~~dl~~ 49 (249)
T 3qao_A 4 MQIKELAELTGVSV-----------RTLHHYDKIGLLVPQKDDWN-GYRIYSEKDVDK 49 (249)
T ss_dssp BCHHHHHHHHCCCH-----------HHHHHHHHTTSSCCEECTTT-CCEEBCHHHHHH
T ss_pred CCHHHHHHHHCcCH-----------HHHHHHHHCCCCCCceECCC-CCeeeCHHHHHH
Confidence 47899999999944 66888889999976542222 245677766665
No 355
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=30.86 E-value=31 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHhcCcce
Q 045905 19 YVAQYVYRFMWILVHSGFFA 38 (128)
Q Consensus 19 ~~~~~L~RlLR~L~~~gvf~ 38 (128)
+.||+||.+|-.|+..||=-
T Consensus 62 E~ADLlYHllVlL~~~gv~l 81 (115)
T 1yvw_A 62 EMVDVFYHCFVLLAEKNIAL 81 (115)
T ss_dssp HHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 57889999999999999743
No 356
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.73 E-value=24 Score=25.36 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=18.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|..|||+.+|+++ .-+-..+.|+++.|-
T Consensus 213 ~s~~EIA~~L~iS~---~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 213 LSSKEIAATLYISV---NTVNRHRQNILEKLS 241 (258)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHHHHHc
Confidence 47899999999955 322224566665543
No 357
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.65 E-value=24 Score=21.02 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=14.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .|.|+.+
T Consensus 23 lsq~~lA~~~gis~---~----~is~~e~ 44 (94)
T 2kpj_A 23 KTQLEIAKSIGVSP---Q----TFNTWCK 44 (94)
T ss_dssp SCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHh
Confidence 46788888888833 5 5655543
No 358
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=30.54 E-value=22 Score=25.34 Aligned_cols=55 Identities=7% Similarity=0.007 Sum_probs=34.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFL 72 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~ 72 (128)
+|+++||+.+++++ . .|.|+.+. +...+-.-- ..+.+..+-++|.... .++....
T Consensus 186 ~sl~~lA~~~~~S~---~----~l~r~fk~-~G~t~~~~l--------~~~Rl~~A~~lL~~~~-~si~eIA 240 (276)
T 3gbg_A 186 WRWADICGELRTNR---M----ILKKELES-RGVKFRELI--------NSIRISYSISLMKTGE-FKIKQIA 240 (276)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHT-TTCCHHHHH--------HHHHHHHHHHHHHHTC-CCHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHH-cCCCHHHHH--------HHHHHHHHHHHHhCCC-CCHHHHH
Confidence 58999999999954 7 88888874 333222211 3466777777776542 2455443
No 359
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=30.24 E-value=19 Score=25.02 Aligned_cols=25 Identities=4% Similarity=0.135 Sum_probs=20.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
.|..+||+++|.+ .. .+.|.||.|-
T Consensus 53 ~t~eeiA~~lG~s---~s----~V~~~LrLl~ 77 (178)
T 1r71_A 53 KKKGDIAKEIGKS---PA----FITQHVTLLD 77 (178)
T ss_dssp CCHHHHHHHHTCC---HH----HHHHHHGGGS
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHHc
Confidence 3778999999994 47 8999999863
No 360
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=30.12 E-value=47 Score=22.24 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=31.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+|..|+|+.+|+++ +-+|+--..|++.... .+++-+.|....+-++
T Consensus 12 ~~i~e~A~~~gvs~-----------~TLR~ye~~Gll~p~r--~~~g~R~Y~~~dl~~l 57 (154)
T 2zhg_A 12 LTPGEVAKRSGVAV-----------SALHFYESKGLITSIR--NSGNQRRYKRDVLRYV 57 (154)
T ss_dssp BCHHHHHHHHTSCH-----------HHHHHHHHTTSSCCEE--CTTSCEEBCTTHHHHH
T ss_pred CCHHHHHHHHCcCH-----------HHHHHHHHcCCCCccc--CCCCCEEeCHHHHHHH
Confidence 47899999999954 4588888899986432 1222456877766543
No 361
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=30.08 E-value=11 Score=30.78 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcC-cceeeccCCCCcccceechHhhhhhhcCC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSG-FFAQQNFGQNDQERSYVATNASKLLLKDI 64 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~g-vf~e~~~~~~~~~~~y~~T~~s~~L~~~~ 64 (128)
+..+||+.+++++ . .+-+.+.-|.+.| ++..... ....|.||+-|+..++.+
T Consensus 22 ~~~~~a~~~~~~~---~----~v~~~~~~L~~~~~~v~~~~~----~~~~~~Lt~eg~~~~~~G 74 (508)
T 3l4g_A 22 DSAELAAELGMEH---Q----AVVGAVKSLQALGEVIEAELR----STKHWELTAEGEEIAREG 74 (508)
T ss_dssp ----------------------------------------------------------------
T ss_pred CHHHHHHHcCCCH---H----HHHHHHHHHHhCCCeEEEEEE----EEEEEEECHHHHHHHHcC
Confidence 4578898888844 7 8889999999998 7764432 146799999998776543
No 362
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.05 E-value=75 Score=22.81 Aligned_cols=47 Identities=23% Similarity=0.226 Sum_probs=33.0
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHH-HHHHHHhcCcceeeccCCCCcccceechHhhhhhhc
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYR-FMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLK 62 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~R-lLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~ 62 (128)
+..++|+.+|++. . .|+| +-+++...|++.... +.+..|..+.....
T Consensus 266 ~~~~~a~~lgi~~---~----tl~~~l~~~~i~~~li~~~~-------~g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 266 GLATLATALSEDP---G----TLEEVHEPYLIRQGLLKRTP-------RGRVPTELAYRHLG 313 (324)
T ss_dssp CHHHHHHHTTSCH---H----HHHHHTHHHHHHTTSEEEET-------TEEEECHHHHHHTT
T ss_pred hHHHHHHHhCCCH---H----HHHHHHhHHHHHhcchhcCC-------ccceecHHHHHHHh
Confidence 4788999999943 6 7777 555699999987553 34677777665543
No 363
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=29.78 E-value=22 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhc-----Cccee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHS-----GFFAQ 39 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~-----gvf~e 39 (128)
+|++||++.++++. . .|.|.|.-|+.. +|+..
T Consensus 216 lt~~ei~~~t~i~~---~----~L~r~L~sL~~~~k~k~~iL~~ 252 (382)
T 3dpl_C 216 ISFENLKLATELPD---A----ELRRTLWSLVAFPKLKRQVLLY 252 (382)
T ss_dssp EEHHHHHHHHCCCH---H----HHHHHHHHHHCCTTCSSCSEEE
T ss_pred CcHHHHHHHHCcCH---H----HHHHHHHHHhcccchhcceeee
Confidence 37899999999944 7 899999999863 57754
No 364
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=29.74 E-value=44 Score=20.36 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=24.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcce
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFA 38 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~ 38 (128)
.|..+||..+++++ . .++|.++..-..|.+.
T Consensus 34 ~s~~~ia~~lgis~---~----Tv~~w~~~~~~~g~~~ 64 (128)
T 1pdn_C 34 IRPCVISRQLRVSH---G----CVSKILNRYQETGSIR 64 (128)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHhhCCcc
Confidence 47889999999944 7 8999998877667553
No 365
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=29.69 E-value=32 Score=19.51 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=10.8
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|-.|||+.+|+++
T Consensus 25 ltq~elA~~~gvs~ 38 (73)
T 3fmy_A 25 LTQKEASEIFGGGV 38 (73)
T ss_dssp CCHHHHHHHHCSCT
T ss_pred CCHHHHHHHhCcCH
Confidence 47788899888844
No 366
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=29.66 E-value=26 Score=19.93 Aligned_cols=22 Identities=14% Similarity=0.097 Sum_probs=15.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 24 lsq~~lA~~~gis~---~----~i~~~e~ 45 (84)
T 2ef8_A 24 LSQSELAIFLGLSQ---S----DISKIES 45 (84)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHc
Confidence 46788888888833 5 5666554
No 367
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=29.64 E-value=37 Score=21.44 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=16.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||+++|+++ . .|.+|=+
T Consensus 21 lSq~eLA~~~gis~---~----~is~iE~ 42 (112)
T 2wus_R 21 ITLLDASLFTNINP---S----KLKRIEE 42 (112)
T ss_dssp CCHHHHHHHSSCCH---H----HHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHC
Confidence 58899999999943 6 6666654
No 368
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.04 E-value=36 Score=20.58 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=26.3
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+|++.||+.+++++ + .+.+++--++..|-+...
T Consensus 31 Isl~~La~ll~ls~---~----~vE~~ls~mI~~~~l~ak 63 (84)
T 1ufm_A 31 ITFEELGALLEIPA---A----KAEKIASQMITEGRMNGF 63 (84)
T ss_dssp EEHHHHHHHTTSCH---H----HHHHHHHHHHHTTSSCEE
T ss_pred eeHHHHHHHHCcCH---H----HHHHHHHHHHhCCcEEEE
Confidence 47899999999954 6 788888888888877543
No 369
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=28.49 E-value=66 Score=19.44 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCHHHHHHhC-----CCCCCCchhhhhhHHHHHHHHHhcC
Q 045905 1 MTLNELINAL-----PFHPIKAQYVAQYVYRFMWILVHSG 35 (128)
Q Consensus 1 ~S~~eLA~~~-----~~~~~~~~~~~~~L~RlLR~L~~~g 35 (128)
+|+-||.+-= ..+--++. .|.|.|+.|+..|
T Consensus 28 ~TlyEL~~Gd~t~~~ef~gmd~~----~L~kaL~~L~k~g 63 (79)
T 3htu_A 28 FTLYELTNGEDTEDEEFHGLDEA----TLLRALQALQQEH 63 (79)
T ss_dssp ECHHHHHHSSTTTTSTTTTCCHH----HHHHHHHHHHHTT
T ss_pred EEEeeeccCCCCCCCcccCCCHH----HHHHHHHHHHHcC
Confidence 3667777621 12222667 9999999999999
No 370
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=28.29 E-value=35 Score=19.95 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=14.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.++.+
T Consensus 27 lsq~~lA~~~gis~---~----~is~~e~ 48 (91)
T 1x57_A 27 LTQKDLATKINEKP---Q----VIADYES 48 (91)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47788888888833 5 5555544
No 371
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=27.88 E-value=5.4 Score=29.33 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+-. +-+++.... +--.+-.|.+++..+.|...
T Consensus 6 ~ti~diA~~agVS~---~----TVSrvln~~---~~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~ 61 (332)
T 2o20_A 6 TTIYDVARVAGVSM---A----TVSRVVNGN---ANVKEKTRQKVLEAIAELDYRPNAVARGLASK 61 (332)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcHHHHHHHHCCCH---H----HHHHHHcCC---CCCCHHHHHHHHHHHHHHCCCcCHHHHHHhcC
Confidence 47899999999954 6 788888753 223332210 00012348888888777654
No 372
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=27.84 E-value=51 Score=23.27 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=34.5
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHH---hcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILV---HSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~---~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
|+..-|+++++.. + .|.|-++.|= ...+|.... +...+|+.|+.|...
T Consensus 18 s~t~AA~~L~isq---~----avS~~i~~LE~~lg~~Lf~R~~-------r~~~lT~~G~~l~~~ 68 (305)
T 3fxq_A 18 SLRAAAQLLHLSQ---P----ALSAAIQQLEDELKAPLLVRTK-------RGVSLTSFGQAFMKH 68 (305)
T ss_dssp CHHHHHHHTTCCH---H----HHHHHHHHHHHHHTSCSEEECS-------SSEEECHHHHHHHHH
T ss_pred CHHHHHHHhCCCH---H----HHHHHHHHHHHHhCCeeEEecC-------CCccCCHhHHHHHHH
Confidence 5667789999943 5 6666666554 445887653 679999999998753
No 373
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=27.67 E-value=91 Score=19.03 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCcceeeccCCCCcccceechHhh
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQNDQERSYVATNAS 57 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s 57 (128)
.|.+-|+-++..|.|..... -|..+.|.+.+-.
T Consensus 49 ~l~~aLk~~v~~G~l~q~Kg--~GasGsfkl~~~~ 81 (90)
T 1hst_A 49 QIKLSIRRLLAAGVLKQTKG--VGASGSFRLAKSD 81 (90)
T ss_dssp HHHHHHHHHHHTTSEEEECC--SSCCCEEEECC--
T ss_pred HHHHHHHHHHHcCCeeeecC--CCccceeecCCCc
Confidence 78999999999999987752 1224688887643
No 374
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=27.22 E-value=15 Score=26.87 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=31.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCC--C-CcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQ--N-DQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~--~-~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+- .+-+++....- . -.+-.|.+++..+.|...
T Consensus 3 ~ti~dvA~~agVS~---~----TVSrvln~---~~~vs~~tr~rV~~aa~~lgY~pn~~ar~l~~~ 58 (332)
T 2hsg_A 3 VTIYDVAREASVSM---A----TVSRVVNG---NPNVKPSTRKKVLETIERLGYRPNAVARGLASK 58 (332)
T ss_dssp CCHHHHHHHTTSCH---H----HHHHHHTT---CTTSCHHHHHHHHHHHHHHTCCSCHHHHHHTTC
T ss_pred CCHHHHHHHhCCCH---H----HHHHHHcC---CCCCCHHHHHHHHHHHHHHCCCcCHHHHHHHhC
Confidence 48999999999943 6 67777764 33333322100 0 001238888888877654
No 375
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.93 E-value=56 Score=20.92 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=23.8
Q ss_pred CCHHHHHHhCCCCCCCchh-hhhhHHHHHHHHHhcC
Q 045905 1 MTLNELINALPFHPIKAQY-VAQYVYRFMWILVHSG 35 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~-~~~~L~RlLR~L~~~g 35 (128)
+|+.||++.+|+.|..+.+ +.+.|..|-|-|-..|
T Consensus 25 lta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g 60 (105)
T 2gmg_A 25 YSPSELARILDMRGKGSKKVILEDLKVISKIAKREG 60 (105)
T ss_dssp BCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 4789999999994322243 5556777777776655
No 376
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=26.52 E-value=36 Score=18.53 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=16.3
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHH
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWI 30 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~ 30 (128)
+.+||.++|+++ . .|++-++.
T Consensus 28 ~~~vA~~~gIs~---~----tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHR---R----QIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCH---H----HHHHHHTT
T ss_pred HHHHHHHHCcCH---H----HHHHHHHH
Confidence 889999999944 6 77776653
No 377
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=26.33 E-value=32 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=16.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .|.|+.+
T Consensus 42 ltq~elA~~~gis~---~----~is~iE~ 63 (99)
T 3g5g_A 42 MTQEDLAYKSNLDR---T----YISGIER 63 (99)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHC
Confidence 57789999999833 6 6776655
No 378
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=26.26 E-value=31 Score=20.10 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=15.4
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 31 lsq~~lA~~~gis~---~----~is~~e~ 52 (92)
T 1lmb_3 31 LSQESVADKMGMGQ---S----GVGALFN 52 (92)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 46788888888833 5 6666655
No 379
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=26.16 E-value=35 Score=22.83 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=11.5
Q ss_pred CHHHHHHhCCCCC
Q 045905 2 TLNELINALPFHP 14 (128)
Q Consensus 2 S~~eLA~~~~~~~ 14 (128)
|++|||+++|+++
T Consensus 97 TleeLA~~~gid~ 109 (160)
T 2lfc_A 97 SLESAAEQAGIVV 109 (160)
T ss_dssp SHHHHHHHHTCCH
T ss_pred CHHHHHHHhCCCH
Confidence 7899999999954
No 380
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=26.02 E-value=41 Score=21.22 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=18.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
+|-+|||.++|+ ... .+.|+|+..-
T Consensus 35 ~tQ~eIA~~lGi---SR~----~VsrlL~~Ar 59 (101)
T 2w7n_A 35 KPQATFATSLGL---TRG----AVSQAVHRVW 59 (101)
T ss_dssp CCHHHHHHHHTC---CHH----HHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHH----HHHHHHHHHH
Confidence 366899999999 336 6777776543
No 381
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=25.89 E-value=32 Score=22.12 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=11.1
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+.+||+++|++
T Consensus 27 ~t~~~Ia~~agvs 39 (191)
T 1sgm_A 27 TGLNQIVKESGAP 39 (191)
T ss_dssp CCHHHHHHHHCCC
T ss_pred cCHHHHHHHHCCC
Confidence 5889999999984
No 382
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=25.67 E-value=51 Score=21.55 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=36.7
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeecc-CCCCcccceechHhhhh
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNF-GQNDQERSYVATNASKL 59 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~-~~~~~~~~y~~T~~s~~ 59 (128)
|+..|.+.+|.|- . -+.+.+..|...||-.+-.. ...+..++|.++.-|-+
T Consensus 35 nvp~L~~~TGmPR---R----TiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I~dWG~i 86 (117)
T 3ke2_A 35 NLLSLGKLTGMPR---R----TLQDAIASFADIGIEVEFVQDGERHNAGYYRIRTWGPI 86 (117)
T ss_dssp CHHHHHHHHCCCH---H----HHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEECTTB
T ss_pred CHHHHHHHHCCCH---h----HHHHHHHHhhhCCeEEEEEeccccCCCccEEEeecCcc
Confidence 6788999999954 6 79999999999997665321 11112478999888743
No 383
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=25.50 E-value=84 Score=23.01 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCC-CCcHHHHHHHh
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDI-TLTVRSFLQAV 75 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~-~~s~~~~~~~~ 75 (128)
.+.+-+..|...|.+.+. + .+|++|+.|..=+ ++.+.-+++..
T Consensus 19 ~l~~A~~~L~~LgAld~~--------g--~lT~lG~~ma~lPl~P~lakmLl~a 62 (270)
T 3i4u_A 19 TLITAMEQLYTLGALDDE--------G--LLTRLGRRMAEFPLEPMLCKMLIMS 62 (270)
T ss_dssp HHHHHHHHHHHHTSBCTT--------S--CBCHHHHHHTTSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCC--------C--CccHHHHHHHhCCCCHHHHHHHHHh
Confidence 899999999999998632 2 4999999998532 23344444433
No 384
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=25.45 E-value=32 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.++.+
T Consensus 28 ltq~eLA~~lGis~---~----~is~ie~ 49 (104)
T 3trb_A 28 MSANQLAKHLAIPT---N----RVTAILN 49 (104)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 57788999999833 6 6666665
No 385
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=25.37 E-value=53 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=14.8
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFM 28 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlL 28 (128)
+|-.|||.++|+++ . .+.|+-
T Consensus 28 ltq~elA~~~gis~---~----~is~~E 48 (86)
T 3eus_A 28 LTQADLAERLDKPQ---S----FVAKVE 48 (86)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHH
T ss_pred CCHHHHHHHhCcCH---H----HHHHHH
Confidence 57789999999843 5 555554
No 386
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=25.18 E-value=70 Score=25.05 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=32.6
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
+.+++.++.|.+. ..+.+ .....|..|...|++.... +++.+|+.|+.|.+.
T Consensus 384 ~~~~~~~~~g~~~--~~~~~-~~~~~l~~~~~~gll~~~~-------~~~~lT~~G~~~~~~ 435 (457)
T 1olt_A 384 DYSPIEQQWDLLF--ADYFA-EDLKLLAPLAKDGLVDVDE-------KGIQVTAKGRLLIRN 435 (457)
T ss_dssp EHHHHHHHTTCCH--HHHTH-HHHHHHHHHHHTTSEEECS-------SEEEECTTTGGGHHH
T ss_pred CHHHHHHHhCCCH--HHHHH-HHHHHHHHHHHCCCEEEEC-------CEEEECHhhHHHHHH
Confidence 3556677777621 01000 1113366788899997653 689999999998754
No 387
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=25.14 E-value=23 Score=27.85 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=19.7
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHH
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILV 32 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~ 32 (128)
|..|+|++.|+++ . .++|+-|.|-
T Consensus 68 t~~~~a~~~g~~~---~----~~~r~wralG 91 (407)
T 1y10_A 68 SAREISENYGVDL---E----LLQRVQRAVG 91 (407)
T ss_dssp CHHHHHHHHTCCH---H----HHHHHHHHTT
T ss_pred CHHHHHHHhCCCH---H----HHHHHHHHcC
Confidence 7899999999944 7 7888888764
No 388
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=25.02 E-value=30 Score=25.10 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=19.1
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHH
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWIL 31 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L 31 (128)
|..|+|+.+|+++ . .++|+-|.|
T Consensus 80 T~~eVAe~aGv~~---e----~~rr~wRal 102 (222)
T 2ev1_A 80 SAREISENYGVDL---E----LLQRVQRAV 102 (222)
T ss_dssp CHHHHHHHHTCCH---H----HHHHHHHHH
T ss_pred CHHHHHHHHCcCH---H----HHHHHHHHh
Confidence 8899999999954 7 888888865
No 389
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=24.70 E-value=6.1 Score=29.42 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccC---CCCcccceechHhhhhhhcC
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFG---QNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~---~~~~~~~y~~T~~s~~L~~~ 63 (128)
+|+.|||++.|++. . -+.|.|+-. +-+++.... +--.+-.|.+++..+.|...
T Consensus 9 ~ti~dvA~~aGVS~---~----TVSrvLn~~---~~Vs~~tr~rV~~aa~~lgY~pn~~ar~l~~~ 64 (348)
T 3bil_A 9 PTLKDVARQAGVSI---A----TASRALADN---PAVAASTRERIQQLASDLGYRANAQARALRSS 64 (348)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCHHHHHHHHCCCH---H----HHHHHHCCC---CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcC
Confidence 37899999999954 6 777888752 233332210 00012348888888877654
No 390
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=24.60 E-value=35 Score=20.61 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=16.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 32 ltq~~lA~~~gis~---~----~is~~e~ 53 (104)
T 3cec_A 32 INTANFAEILGVSN---Q----TIQEVIN 53 (104)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47789999999843 6 6777665
No 391
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=24.33 E-value=44 Score=19.00 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=15.9
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
|..|||.++|+++ . .|.++.+
T Consensus 13 sq~~lA~~lgvs~---~----~is~~e~ 33 (79)
T 3bd1_A 13 SVSALAASLGVRQ---S----AISNWRA 33 (79)
T ss_dssp SHHHHHHHHTCCH---H----HHHHHHH
T ss_pred CHHHHHHHHCCCH---H----HHHHHHH
Confidence 4678999999943 6 7777766
No 392
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=24.12 E-value=46 Score=23.88 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=29.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhh
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKL 59 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~ 59 (128)
+++.|+|+.+|+++ +-+|+--..|++....... ++-+.|....+-++
T Consensus 1 ~~IgevA~~~Gvs~-----------~TLRyYE~~GLl~p~~R~~-~gyR~Y~~~dl~~L 47 (222)
T 2dg6_A 1 MRLADLSKRSGVST-----------ATIKYYLREGLLPPGRQVN-ATTAEYDEDHLRRL 47 (222)
T ss_dssp CCHHHHHHHHTCCH-----------HHHHHHHHHTSSCCC----------CCHHHHHHH
T ss_pred CCHHHHHHHHCcCH-----------HHHHHHHHCCCCCCCeeCC-CCceeeCHHHHHHH
Confidence 58899999999944 4578888889997533211 12456887777653
No 393
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=24.10 E-value=49 Score=20.31 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=15.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .|.|+.+
T Consensus 42 lsq~~lA~~~gis~---~----~is~~E~ 63 (117)
T 3f52_A 42 VTLRELAEASRVSP---G----YLSELER 63 (117)
T ss_dssp CCHHHHHHHTTSCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHC
Confidence 57789999999843 6 6666654
No 394
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.02 E-value=81 Score=22.64 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=22.1
Q ss_pred CHHHHHHhC-----CCCCCCchhhhhhHHHHHHHHHhcCcceee
Q 045905 2 TLNELINAL-----PFHPIKAQYVAQYVYRFMWILVHSGFFAQQ 40 (128)
Q Consensus 2 S~~eLA~~~-----~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~ 40 (128)
+..+|+..+ ++ +.. .+.+.++.|...|++...
T Consensus 297 ~~~~l~~~~~~~~~~~---~~~----~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 297 RWSLIRDYLAVKGTKI---PEP----RLYALLENLKKMNWIVEE 333 (350)
T ss_dssp SHHHHHHHHHHTTCCC---CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCCC---CHH----HHHHHHHHHHhCCCEEec
Confidence 456666554 45 335 678888889999988754
No 395
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=23.13 E-value=66 Score=20.97 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=16.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|-.|||.++|+++ . .+.|+.+
T Consensus 82 lTq~elA~~lGis~---s----~is~~E~ 103 (141)
T 3kxa_A 82 FTQSELATAAGLPQ---P----YLSRIEN 103 (141)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47788999999843 6 7777766
No 396
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=23.12 E-value=52 Score=22.63 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=34.7
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHH---hcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILV---HSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~---~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
|+..=|+++++.. + .|.|-++.|= ..-+|.... +...+|+.|+.|...
T Consensus 17 s~t~AA~~L~isq---~----avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~ 67 (291)
T 3szp_A 17 SYTSTSKKTMIPV---A----TITRRIQALEDSLNLRLLNRHA-------RKLTLTEAGERFYKD 67 (291)
T ss_dssp SHHHHHHHHTCCH---H----HHHHHHHHHHHHHTCCCEEEET-------TEEEECHHHHHHHHH
T ss_pred CHHHHHHHhCCCH---H----HHHHHHHHHHHHhCCceEeecC-------CCcccCHhHHHHHHH
Confidence 5667788888843 6 6766666664 445887664 679999999999753
No 397
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=22.82 E-value=47 Score=18.34 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=17.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcc
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFF 37 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf 37 (128)
+|+.|.|+.+..+| ... .|+|.. ..|-+
T Consensus 3 ltl~EwA~~~~~~~-s~~----Tl~r~a----r~G~I 30 (52)
T 2og0_A 3 LTLQEWNARQRRPR-SLE----TVRRWV----RESRI 30 (52)
T ss_dssp EEHHHHHHTSSSCC-CHH----HHHHHH----HTTCE
T ss_pred eeHHHHHHHhcCCC-CHH----HHHHHH----HCCCC
Confidence 47899999984322 334 455554 45655
No 398
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=22.64 E-value=74 Score=18.82 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=11.5
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|..|||.++|+++
T Consensus 15 lsq~~lA~~~gis~ 28 (98)
T 3lfp_A 15 ISQEKLGVLAGIDE 28 (98)
T ss_dssp CCHHHHHHHTTCCH
T ss_pred CCHHHHHHHhCCCc
Confidence 57889999999944
No 399
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.60 E-value=69 Score=20.52 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=24.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcce
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFA 38 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~ 38 (128)
.|..+||..+|++. . .++|.++..-..|.+.
T Consensus 49 ~s~~~iA~~lgis~---~----TV~rw~~~~~~~G~~~ 79 (149)
T 1k78_A 49 VRPCDISRQLRVSH---G----CVSKILGRYYETGSIK 79 (149)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHHcCCCC
Confidence 47889999999944 7 8999998877667653
No 400
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.59 E-value=82 Score=17.34 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=15.9
Q ss_pred HHHHHHhCCCCCCCchhhhhhHHHHHHH
Q 045905 3 LNELINALPFHPIKAQYVAQYVYRFMWI 30 (128)
Q Consensus 3 ~~eLA~~~~~~~~~~~~~~~~L~RlLR~ 30 (128)
..+.|..+|++. . .|+|-|+-
T Consensus 36 ~~~aA~~LGIsr---~----tL~rklkk 56 (61)
T 1g2h_A 36 TRKLAQRLGVSH---T----AIANKLKQ 56 (61)
T ss_dssp HHHHHHHTTSCT---H----HHHHHHHT
T ss_pred HHHHHHHhCCCH---H----HHHHHHHH
Confidence 457889999954 7 78888773
No 401
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=22.37 E-value=51 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=16.2
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 37 ltq~elA~~~gis~---~----~is~~E~ 58 (111)
T 3mlf_A 37 LTQKELGDLFKVSS---R----TIQNMEK 58 (111)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHC
Confidence 57789999999843 5 6666665
No 402
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=22.27 E-value=39 Score=24.23 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=19.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWIL 31 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L 31 (128)
.|.++||+++|.+ .. .+.|.+|.+
T Consensus 135 ~t~~~iA~~lG~s---~~----~V~~~l~l~ 158 (230)
T 1vz0_A 135 LTQEEVARRVGKA---RS----TVANALRLL 158 (230)
T ss_dssp CCHHHHHHHHTCC---HH----HHHHHHHGG
T ss_pred CCHHHHHHHHCcC---HH----HHHHHHHHH
Confidence 3678999999994 47 888988876
No 403
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=22.25 E-value=73 Score=25.94 Aligned_cols=40 Identities=5% Similarity=-0.026 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCcceeeccCCCCccc---ceechHhhhhhhcCC
Q 045905 23 YVYRFMWILVHSGFFAQQNFGQNDQER---SYVATNASKLLLKDI 64 (128)
Q Consensus 23 ~L~RlLR~L~~~gvf~e~~~~~~~~~~---~y~~T~~s~~L~~~~ 64 (128)
.+.+|+|.|+..|++.++..... -+ +..+|+.++.+..+.
T Consensus 494 ~~~~~~~~l~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 536 (591)
T 2v1x_A 494 DLEKIIAHFLIQQYLKEDYSFTA--YATISYLKIGPKANLLNNEA 536 (591)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECS--SCEEEEEEECGGGGGGGSTT
T ss_pred HHHHHHHHHHHcCCcEEecccCC--CceeEEeeECHHHHHHhcCC
Confidence 79999999999999988641000 11 135899998777653
No 404
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.24 E-value=55 Score=21.08 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=11.0
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+.+||+++|++
T Consensus 23 ~ti~~Ia~~agvs 35 (194)
T 3bqz_B 23 TTTGEIVKLSESS 35 (194)
T ss_dssp CCHHHHHHHTTCC
T ss_pred CCHHHHHHHhCCC
Confidence 5889999999983
No 405
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=22.10 E-value=45 Score=23.33 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=34.3
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHHHH---hcCcceeeccCCCCcccceechHhhhhhhcC
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWILV---HSGFFAQQNFGQNDQERSYVATNASKLLLKD 63 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~---~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~ 63 (128)
|+..-|+++++. ++ .|.|-++.|= ..-+|.... +.+.+|+.|+.|...
T Consensus 19 s~t~AA~~L~is---q~----avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~ 69 (306)
T 3hhg_A 19 SFSRAAEQLAMA---NS----AVSRIVKRLEEKLGVNLLNRTT-------RQLSLTEEGAQYFRR 69 (306)
T ss_dssp SHHHHHHHHTCC---HH----HHHHHHHHHHHHHTSCCEETTS-------SSCEECHHHHHHHHH
T ss_pred CHHHHHHHhCCC---HH----HHHHHHHHHHHHhCCeeEeecC-------CCeeECHhHHHHHHH
Confidence 566778889983 36 6776666664 345787553 679999999988753
No 406
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=22.01 E-value=41 Score=21.55 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=11.0
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+.+||+++|++
T Consensus 29 ~ti~~Ia~~agvs 41 (188)
T 3qkx_A 29 LSMLKLAKEANVA 41 (188)
T ss_dssp CCHHHHHHHHTCC
T ss_pred CCHHHHHHHhCCC
Confidence 5889999999983
No 407
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.99 E-value=43 Score=20.17 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=15.5
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.++.+
T Consensus 15 ltq~~lA~~~gis~---~----~i~~~e~ 36 (111)
T 1b0n_A 15 YSLSELAEKAGVAK---S----YLSSIER 36 (111)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHHT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 57789999999843 5 5655554
No 408
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.86 E-value=53 Score=20.03 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=15.9
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .+.|+.+
T Consensus 23 lsq~~lA~~~gis~---~----~i~~~e~ 44 (114)
T 3op9_A 23 LKNHQIAELLNVQT---R----TVAYYMS 44 (114)
T ss_dssp CCHHHHHHHHTSCH---H----HHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 57789999999843 5 6666655
No 409
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.83 E-value=54 Score=21.80 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=11.8
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|+.+||+++|++.
T Consensus 49 ~tv~~IA~~agvs~ 62 (215)
T 2qko_A 49 LTFRAVDVEANVPK 62 (215)
T ss_dssp CCHHHHHHHSSSTT
T ss_pred ccHHHHHHHcCCCc
Confidence 58999999999843
No 410
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.64 E-value=45 Score=21.82 Aligned_cols=14 Identities=0% Similarity=-0.047 Sum_probs=11.5
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|+.+||+++|++.
T Consensus 30 ~ti~~IA~~agvs~ 43 (193)
T 2dg8_A 30 VSHRRIAQRAGVPL 43 (193)
T ss_dssp CCHHHHHHHHTSCT
T ss_pred ccHHHHHHHhCCCc
Confidence 58899999999843
No 411
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=21.45 E-value=42 Score=22.64 Aligned_cols=13 Identities=23% Similarity=0.084 Sum_probs=10.5
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|..|||+++|++
T Consensus 24 ~s~~~la~~~gis 36 (198)
T 2bnm_A 24 MDHAALASLLGET 36 (198)
T ss_dssp CCHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcC
Confidence 5788999999873
No 412
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=21.37 E-value=60 Score=24.53 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=37.6
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechHhhhhhhcCCCCcHHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATNASKLLLKDITLTVRSFLQA 74 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~~s~~L~~~~~~s~~~~~~~ 74 (128)
+|+++||+.+++++ . .|.|+++.-+...+-..- ..+.+..+-++|.... .++......
T Consensus 322 ~~~~~~a~~~~~s~---~----~l~r~f~~~~g~s~~~~~--------~~~r~~~a~~~L~~~~-~~i~~ia~~ 379 (412)
T 4fe7_A 322 IKVDQVLDAVGISR---S----NLEKRFKEEVGETIHAMI--------HAEKLEKARSLLISTT-LSINEISQM 379 (412)
T ss_dssp CCHHHHHHHTTCCH---H----HHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHHHHHCcCHHHHH--------HHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 47899999999944 7 899999876654433322 3466777777775432 345544333
No 413
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=21.21 E-value=59 Score=21.09 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=11.0
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+.+||++.|++
T Consensus 28 ~t~~~IA~~agvs 40 (192)
T 2zcm_A 28 TTLDDISKSVNIK 40 (192)
T ss_dssp CCHHHHHHHTTCC
T ss_pred CCHHHHHHHhCCC
Confidence 5889999999983
No 414
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=21.15 E-value=35 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=15.1
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMW 29 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR 29 (128)
+|..|||.++|+++ . .|.|+.+
T Consensus 35 ltq~elA~~~gis~---~----~is~~E~ 56 (114)
T 3vk0_A 35 WSQEELARQCGLDR---T----YVSAVER 56 (114)
T ss_dssp CCHHHHHHHHTCCH---H----HHHHHTT
T ss_pred CCHHHHHHHHCcCH---H----HHHHHHc
Confidence 47788999988833 5 5666543
No 415
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=21.13 E-value=48 Score=21.83 Aligned_cols=14 Identities=7% Similarity=0.275 Sum_probs=11.3
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|+++||++.|++.
T Consensus 33 ~s~~~IA~~aGvs~ 46 (197)
T 2hyt_A 33 TSMDDLTAQASLTR 46 (197)
T ss_dssp CCHHHHHHHHTCCT
T ss_pred CCHHHHHHHhCCCH
Confidence 47899999999843
No 416
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=21.03 E-value=60 Score=21.13 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=10.1
Q ss_pred CCHHHHHHhCCC
Q 045905 1 MTLNELINALPF 12 (128)
Q Consensus 1 ~S~~eLA~~~~~ 12 (128)
+|+.+||++.|+
T Consensus 28 ~t~~~Ia~~agv 39 (195)
T 2dg7_A 28 VTVTDIAERAGL 39 (195)
T ss_dssp CCHHHHHHHTTC
T ss_pred cCHHHHHHHhCC
Confidence 478889999887
No 417
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=20.99 E-value=48 Score=21.97 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=11.2
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+++||++.|+.
T Consensus 32 ~s~~~IA~~aGvs 44 (210)
T 2xdn_A 32 TTLADIAELAGVT 44 (210)
T ss_dssp CCHHHHHHHHTCC
T ss_pred CcHHHHHHHHCCC
Confidence 5889999999984
No 418
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=20.75 E-value=60 Score=21.01 Aligned_cols=13 Identities=0% Similarity=0.163 Sum_probs=11.2
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+.+||++.|++
T Consensus 35 ~ti~~Ia~~agvs 47 (203)
T 3f1b_A 35 TSMDAIAAKAEIS 47 (203)
T ss_dssp CCHHHHHHHTTSC
T ss_pred ccHHHHHHHhCCc
Confidence 5889999999983
No 419
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=20.66 E-value=1.3e+02 Score=17.31 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCHHHHHHhCCCCCCCchhhhhhHHHHHHHHHhcCcceeeccCCCCcccceechH
Q 045905 1 MTLNELINALPFHPIKAQYVAQYVYRFMWILVHSGFFAQQNFGQNDQERSYVATN 55 (128)
Q Consensus 1 ~S~~eLA~~~~~~~~~~~~~~~~L~RlLR~L~~~gvf~e~~~~~~~~~~~y~~T~ 55 (128)
||+.|+|+..+.+- . .-+-.|-.|..-|-++... .+|.+-|
T Consensus 19 MTaGEVAA~f~w~L---e----~ar~aLeqLf~~G~LRKRs-------SRYrlkp 59 (68)
T 3i71_A 19 MTAGEVAAHFGWPL---E----KARNALEQLFSAGTLRKRS-------SRYRLKP 59 (68)
T ss_dssp BCHHHHHHHHTCCH---H----HHHHHHHHHHHTTSEEEEC-------CEEEECC
T ss_pred ccHHHHHHHhCCcH---H----HHHHHHHHHHhcchhhhhc-------cccccCc
Confidence 68889999988733 3 4445566666778887553 4677654
No 420
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=20.59 E-value=36 Score=21.92 Aligned_cols=13 Identities=0% Similarity=-0.049 Sum_probs=11.0
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|+.+||++.|++
T Consensus 30 ~tv~~Ia~~agvs 42 (195)
T 3ppb_A 30 TSTATIAREAGVA 42 (195)
T ss_dssp SCHHHHHHHHTCC
T ss_pred CCHHHHHHHhCCC
Confidence 5889999999984
No 421
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=20.29 E-value=46 Score=21.80 Aligned_cols=12 Identities=8% Similarity=0.277 Sum_probs=10.8
Q ss_pred CCHHHHHHhCCC
Q 045905 1 MTLNELINALPF 12 (128)
Q Consensus 1 ~S~~eLA~~~~~ 12 (128)
+|+++||++.|+
T Consensus 33 ~t~~~IA~~agv 44 (192)
T 2fq4_A 33 VTVDKIAERAKV 44 (192)
T ss_dssp CCHHHHHHHHTC
T ss_pred ccHHHHHHHcCC
Confidence 589999999998
No 422
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=20.22 E-value=47 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.8
Q ss_pred CCHHHHHHhCCCC
Q 045905 1 MTLNELINALPFH 13 (128)
Q Consensus 1 ~S~~eLA~~~~~~ 13 (128)
+|++|||+++|++
T Consensus 24 ~s~~~IA~~agvs 36 (190)
T 3vpr_A 24 TSVQDLAQALGLS 36 (190)
T ss_dssp CCHHHHHHHHTCC
T ss_pred CCHHHHHHHhCCC
Confidence 4789999999983
No 423
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=20.20 E-value=86 Score=17.87 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=17.2
Q ss_pred CHHHHHHhCCCCCCCchhhhhhHHHHHHH
Q 045905 2 TLNELINALPFHPIKAQYVAQYVYRFMWI 30 (128)
Q Consensus 2 S~~eLA~~~~~~~~~~~~~~~~L~RlLR~ 30 (128)
|..++|+++|+ ..+ .+.+.+|.
T Consensus 15 sq~~~A~~Lgv---sq~----aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGL---SQK----LIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSS---CHH----HHHHHHHT
T ss_pred CHHHHHHHhCC---CHH----HHHHHHHh
Confidence 56799999999 447 78887754
No 424
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.17 E-value=70 Score=20.51 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=18.9
Q ss_pred CchhhhhhHHHHHHHHHhcCcceeec
Q 045905 16 KAQYVAQYVYRFMWILVHSGFFAQQN 41 (128)
Q Consensus 16 ~~~~~~~~L~RlLR~L~~~gvf~e~~ 41 (128)
|.. .+.||.++|...|+..-..
T Consensus 83 Dv~----~i~RVh~FLe~wGLIN~~~ 104 (111)
T 2dce_A 83 DVN----CIGRIHTYLELIGAINFGC 104 (111)
T ss_dssp CHH----HHHHHHHHHHHHSSSSCSC
T ss_pred CHH----HHHHHHHHHHHcCeeecCC
Confidence 667 9999999999999987543
No 425
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.06 E-value=51 Score=21.78 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=11.6
Q ss_pred CCHHHHHHhCCCCC
Q 045905 1 MTLNELINALPFHP 14 (128)
Q Consensus 1 ~S~~eLA~~~~~~~ 14 (128)
+|+.+||+++|++.
T Consensus 38 ~t~~~IA~~agvs~ 51 (218)
T 3gzi_A 38 VSIREIASLAGTDP 51 (218)
T ss_dssp CCHHHHHHHHTSCT
T ss_pred CCHHHHHHHhCCCH
Confidence 58899999999843
Done!