Query 045906
Match_columns 125
No_of_seqs 145 out of 806
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 99.9 3.7E-21 8.1E-26 158.3 11.0 109 10-124 26-149 (345)
2 PF00544 Pec_lyase_C: Pectate 99.5 6.7E-15 1.4E-19 113.9 3.8 68 56-125 1-81 (200)
3 smart00656 Amb_all Amb_all dom 99.3 2.1E-12 4.6E-17 99.4 6.5 53 72-124 10-65 (190)
4 PLN02480 Probable pectinestera 96.4 0.038 8.2E-07 46.7 9.8 68 45-115 60-145 (343)
5 TIGR03805 beta_helix_1 paralle 96.1 0.046 1E-06 45.1 8.7 65 48-114 1-75 (314)
6 PLN02176 putative pectinestera 94.4 0.35 7.5E-06 40.9 8.8 66 47-115 53-135 (340)
7 PLN02432 putative pectinestera 92.1 3.9 8.4E-05 33.9 11.5 68 45-116 23-108 (293)
8 PLN02197 pectinesterase 91.7 1.2 2.6E-05 40.2 8.6 72 41-115 280-377 (588)
9 PF14592 Chondroitinas_B: Chon 91.3 0.6 1.3E-05 40.7 6.1 72 37-117 1-82 (425)
10 PLN02773 pectinesterase 90.3 4.2 9E-05 34.1 10.1 67 45-115 17-115 (317)
11 PLN02304 probable pectinestera 89.7 2.1 4.6E-05 36.8 8.0 67 46-115 88-175 (379)
12 PF12708 Pectate_lyase_3: Pect 89.6 2.6 5.6E-05 31.2 7.6 40 48-88 21-63 (225)
13 PLN02682 pectinesterase family 89.6 2.9 6.2E-05 35.8 8.7 66 46-115 83-176 (369)
14 PLN02665 pectinesterase family 89.5 4.7 0.0001 34.5 9.9 68 45-115 80-167 (366)
15 PLN02416 probable pectinestera 88.0 2.9 6.4E-05 37.4 8.0 72 41-115 235-330 (541)
16 PLN02484 probable pectinestera 86.4 3.1 6.7E-05 37.6 7.3 67 47-115 286-373 (587)
17 PLN02933 Probable pectinestera 86.3 4.7 0.0001 36.1 8.3 72 41-115 223-318 (530)
18 PF01696 Adeno_E1B_55K: Adenov 85.8 6.6 0.00014 34.0 8.7 76 33-115 47-134 (386)
19 PLN02990 Probable pectinestera 85.6 6.4 0.00014 35.5 8.9 71 42-115 265-360 (572)
20 PLN02301 pectinesterase/pectin 85.6 3.5 7.5E-05 37.0 7.1 70 43-115 243-336 (548)
21 PF01095 Pectinesterase: Pecti 85.3 7.4 0.00016 32.1 8.5 67 46-115 13-100 (298)
22 PLN02745 Putative pectinestera 84.8 5.1 0.00011 36.3 7.9 66 47-115 299-385 (596)
23 PLN02916 pectinesterase family 84.0 6.3 0.00014 35.1 8.0 67 46-115 200-290 (502)
24 PLN02497 probable pectinestera 83.8 13 0.00028 31.4 9.5 66 47-115 46-128 (331)
25 PLN02634 probable pectinestera 83.4 16 0.00034 31.3 9.9 66 46-115 69-162 (359)
26 PLN02995 Probable pectinestera 83.4 5.9 0.00013 35.5 7.6 71 42-115 229-325 (539)
27 PLN02188 polygalacturonase/gly 81.6 9 0.0002 33.0 7.9 29 93-125 205-233 (404)
28 PLN02201 probable pectinestera 81.6 8.2 0.00018 34.5 7.8 66 47-115 220-306 (520)
29 PLN02170 probable pectinestera 81.4 8.2 0.00018 34.6 7.7 72 41-115 230-326 (529)
30 PLN02671 pectinesterase 81.3 25 0.00054 30.1 10.3 64 47-114 73-166 (359)
31 PLN03003 Probable polygalactur 81.1 7.9 0.00017 34.1 7.4 16 98-113 166-181 (456)
32 PLN02488 probable pectinestera 81.0 6 0.00013 35.3 6.7 66 47-115 211-297 (509)
33 PLN02708 Probable pectinestera 80.3 8.3 0.00018 34.6 7.5 67 47-116 255-344 (553)
34 PLN02506 putative pectinestera 80.0 8.5 0.00018 34.5 7.4 67 46-115 245-332 (537)
35 PLN03043 Probable pectinestera 79.5 12 0.00026 33.6 8.1 67 46-115 236-326 (538)
36 PLN02713 Probable pectinestera 78.8 22 0.00048 32.1 9.7 72 41-115 255-353 (566)
37 PLN02313 Pectinesterase/pectin 77.1 7.9 0.00017 35.0 6.4 67 47-116 289-376 (587)
38 PLN02793 Probable polygalactur 76.8 13 0.00029 32.4 7.5 28 94-125 228-255 (443)
39 PLN02217 probable pectinestera 76.3 14 0.0003 34.1 7.8 72 41-115 255-350 (670)
40 PLN02314 pectinesterase 75.6 18 0.00039 32.7 8.2 67 46-115 291-378 (586)
41 PLN02468 putative pectinestera 75.5 16 0.00035 32.9 7.9 66 47-115 272-358 (565)
42 PRK10531 acyl-CoA thioesterase 75.3 22 0.00048 31.1 8.4 16 100-115 204-219 (422)
43 TIGR03808 RR_plus_rpt_1 twin-a 75.1 15 0.00032 32.5 7.4 66 47-115 56-128 (455)
44 PLN02218 polygalacturonase ADP 74.6 13 0.00029 32.2 6.9 28 94-125 243-270 (431)
45 PF07602 DUF1565: Protein of u 70.9 46 0.00099 27.0 8.8 19 95-114 116-134 (246)
46 PLN03010 polygalacturonase 69.9 10 0.00022 32.9 5.1 62 58-123 131-211 (409)
47 TIGR03805 beta_helix_1 paralle 69.0 39 0.00084 27.8 8.2 19 94-112 78-96 (314)
48 PLN03010 polygalacturonase 67.6 11 0.00023 32.7 4.8 36 78-116 139-180 (409)
49 PLN02218 polygalacturonase ADP 66.7 13 0.00027 32.4 5.1 27 98-124 220-247 (431)
50 PF00295 Glyco_hydro_28: Glyco 64.7 6.9 0.00015 32.2 3.0 29 93-125 142-170 (326)
51 PLN02155 polygalacturonase 64.7 25 0.00055 30.2 6.5 28 94-125 196-223 (394)
52 PLN02793 Probable polygalactur 58.4 25 0.00053 30.7 5.4 28 97-124 204-232 (443)
53 PLN02188 polygalacturonase/gly 55.8 29 0.00062 29.9 5.3 27 98-124 183-210 (404)
54 PLN03003 Probable polygalactur 50.8 35 0.00076 30.1 5.2 28 94-125 189-216 (456)
55 PLN02155 polygalacturonase 49.9 30 0.00066 29.7 4.6 27 98-124 173-200 (394)
56 TIGR03808 RR_plus_rpt_1 twin-a 45.0 29 0.00063 30.7 3.7 35 81-115 123-157 (455)
57 cd06401 PB1_TFG The PB1 domain 44.3 23 0.0005 24.3 2.4 26 31-61 52-77 (81)
58 smart00710 PbH1 Parallel beta- 43.0 39 0.00085 16.0 2.7 20 102-124 2-21 (26)
59 COG5434 PGU1 Endopygalactoruna 40.3 34 0.00075 30.9 3.5 29 93-125 287-315 (542)
60 PF00295 Glyco_hydro_28: Glyco 34.1 33 0.00072 28.2 2.3 29 96-124 118-147 (326)
61 COG3420 NosD Nitrous oxidase a 33.0 3.2E+02 0.0069 23.9 8.0 48 64-115 39-90 (408)
62 PF12708 Pectate_lyase_3: Pect 31.9 72 0.0016 23.3 3.7 20 95-114 201-220 (225)
63 cd02989 Phd_like_TxnDC9 Phosdu 29.1 46 0.00099 22.9 2.0 27 31-62 3-29 (113)
64 PF07602 DUF1565: Protein of u 25.0 1.9E+02 0.0041 23.5 5.1 20 96-115 91-110 (246)
65 PF00544 Pec_lyase_C: Pectate 22.4 1.9E+02 0.0041 22.1 4.5 24 91-114 73-96 (200)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3.7e-21 Score=158.26 Aligned_cols=109 Identities=33% Similarity=0.445 Sum_probs=95.6
Q ss_pred cccccccCCcccccc-------CCcCCCCcceEEEcCCCCCCCchHHHhhhcCCCeEEEEeeeeEEEeC------eeeee
Q 045906 10 CSLRALAGQAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSV 76 (125)
Q Consensus 10 ~~~~~~~~~~~Gfg~-------~ttGG~gg~~~~Vtt~~d~g~GsLr~a~~~~~p~iIvf~vsGtI~l~------~~l~V 76 (125)
+.-+.|-. .+|||+ |||||.+|.+++|+|.+| |..+++..+|.++++-++|+|+.+ .+|++
T Consensus 26 ant~t~~~-~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki 99 (345)
T COG3866 26 ANTQTLNS-FAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKI 99 (345)
T ss_pred cCCccccc-ccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEee
Confidence 34455533 889987 899999999999999999 999999999984444499999987 56888
Q ss_pred cCCeEEEeecCceEEecCcEEEeccCcEEEeeeEEecCCCCCC--Ceeee
Q 045906 77 SSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFECGKGPDA--DAIQI 124 (125)
Q Consensus 77 ~snkTI~G~g~~~~i~G~gl~i~~~~NVIIrNL~i~~~~~~~~--DaI~I 124 (125)
.|||||.|.|.+++|.|++|.|+.+.|||||||+|++...+|. |+|+|
T Consensus 100 ~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi 149 (345)
T COG3866 100 GSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISI 149 (345)
T ss_pred ccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEe
Confidence 9999999999999999999999999999999999998876555 99998
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=99.52 E-value=6.7e-15 Score=113.95 Aligned_cols=68 Identities=51% Similarity=0.705 Sum_probs=56.0
Q ss_pred CCeEEEEeeeeEEEeCeeeeecCCeEEEeecCceEEecCcEEEe-ccCcEEEeeeEEecC----------CC--CCCCee
Q 045906 56 EPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFECG----------KG--PDADAI 122 (125)
Q Consensus 56 ~p~iIvf~vsGtI~l~~~l~V~snkTI~G~g~~~~i~G~gl~i~-~~~NVIIrNL~i~~~----------~~--~~~DaI 122 (125)
+|++| +++|+|+++.+|.|+|||||+|.|.+++|.+.|+.+. +++|||||||+|++. .. .+.|+|
T Consensus 1 ~~~ii--~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai 78 (200)
T PF00544_consen 1 EPLII--KVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAI 78 (200)
T ss_dssp S-EEE--EEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SE
T ss_pred CcEEE--EEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeE
Confidence 46644 5999999999999999999999999999999999997 999999999999983 11 578999
Q ss_pred eeC
Q 045906 123 QIK 125 (125)
Q Consensus 123 ~I~ 125 (125)
+|.
T Consensus 79 ~i~ 81 (200)
T PF00544_consen 79 SID 81 (200)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 3
>smart00656 Amb_all Amb_all domain.
Probab=99.34 E-value=2.1e-12 Score=99.36 Aligned_cols=53 Identities=45% Similarity=0.680 Sum_probs=48.8
Q ss_pred eeeeecCCeEEEeecCceEEecCcEEEeccCcEEEeeeEEecCCC---CCCCeeee
Q 045906 72 SHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFECGKG---PDADAIQI 124 (125)
Q Consensus 72 ~~l~V~snkTI~G~g~~~~i~G~gl~i~~~~NVIIrNL~i~~~~~---~~~DaI~I 124 (125)
.+|.|+|||||+|++++++|.|.+|++.+++|||||||+|++... ++.|+|++
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~ 65 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISI 65 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEE
Confidence 579999999999999999999999999989999999999999875 57899986
No 4
>PLN02480 Probable pectinesterase
Probab=96.37 E-value=0.038 Score=46.66 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=44.6
Q ss_pred CchHHHhhhc----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCc-eEEecC----------cEEEeccCcEEE
Q 045906 45 PGSLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQR-VKLTGK----------GLRLKECEHVII 106 (125)
Q Consensus 45 ~GsLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~-~~i~G~----------gl~i~~~~NVII 106 (125)
--|+.+|+.. +..++++|=..|+.+ .+|.| .+|+||.|.+.. ..|.+. -|.| .++|+++
T Consensus 60 f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a 136 (343)
T PLN02480 60 FTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVA 136 (343)
T ss_pred cccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEE
Confidence 4478888863 223444433578765 56777 467899998743 444422 2455 4899999
Q ss_pred eeeEEecCC
Q 045906 107 CNLEFECGK 115 (125)
Q Consensus 107 rNL~i~~~~ 115 (125)
|||+|++..
T Consensus 137 ~nLTf~Nta 145 (343)
T PLN02480 137 FGISIRNDA 145 (343)
T ss_pred EeeEEEecC
Confidence 999999873
No 5
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.07 E-value=0.046 Score=45.10 Aligned_cols=65 Identities=28% Similarity=0.384 Sum_probs=42.4
Q ss_pred HHHhhhcCCC-eEEEEeeeeEEEeCeeeeec-CCeEEEeecCc-eEEe-------cCcEEEeccCcEEEeeeEEecC
Q 045906 48 LREGCRMKEP-LWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQR-VKLT-------GKGLRLKECEHVIICNLEFECG 114 (125)
Q Consensus 48 Lr~a~~~~~p-~iIvf~vsGtI~l~~~l~V~-snkTI~G~g~~-~~i~-------G~gl~i~~~~NVIIrNL~i~~~ 114 (125)
|.+|+....| -+|++ -.|+..++..|.|. ++.||.|.|.. ..|. +.++.+ .++||.|++|++++.
T Consensus 1 iQ~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~ 75 (314)
T TIGR03805 1 LQEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENT 75 (314)
T ss_pred CHhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcC
Confidence 3456654333 24443 57888887888886 88999998753 4444 234555 477888888887765
No 6
>PLN02176 putative pectinesterase
Probab=94.37 E-value=0.35 Score=40.92 Aligned_cols=66 Identities=12% Similarity=0.300 Sum_probs=43.7
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe--cC--------cEEEeccCcEEEeee
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--GK--------GLRLKECEHVIICNL 109 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~--G~--------gl~i~~~~NVIIrNL 109 (125)
|..+|+.. +..++++|=..|+.+ ++|.|+ +|+|+.|.|.+-++. +. .+.+ .++|++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 56778853 223444443578874 567774 689999998654443 11 2455 5899999999
Q ss_pred EEecCC
Q 045906 110 EFECGK 115 (125)
Q Consensus 110 ~i~~~~ 115 (125)
+|++.-
T Consensus 130 T~~Nt~ 135 (340)
T PLN02176 130 TFKNTY 135 (340)
T ss_pred EEEeCC
Confidence 999763
No 7
>PLN02432 putative pectinesterase
Probab=92.08 E-value=3.9 Score=33.92 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=43.6
Q ss_pred CchHHHhhhc-----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEEe----c------CcEEEeccCcEEE
Q 045906 45 PGSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT----G------KGLRLKECEHVII 106 (125)
Q Consensus 45 ~GsLr~a~~~-----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i~----G------~gl~i~~~~NVII 106 (125)
--|+.+|+.. .+|.+|.+ ..|+. .++|.| .+|+|+.|.+..-++. + ..+.+ .++|++.
T Consensus 23 f~TIq~Aida~p~~~~~~~~I~I-~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a 98 (293)
T PLN02432 23 FRKIQDAIDAVPSNNSQLVFIWV-KPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVG 98 (293)
T ss_pred ccCHHHHHhhccccCCceEEEEE-eCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEE
Confidence 3356677753 23444442 57876 556777 4788999987544443 1 12444 5899999
Q ss_pred eeeEEecCCC
Q 045906 107 CNLEFECGKG 116 (125)
Q Consensus 107 rNL~i~~~~~ 116 (125)
+||+|++..+
T Consensus 99 ~nlt~~Nt~g 108 (293)
T PLN02432 99 RFLTIQNTFG 108 (293)
T ss_pred EeeEEEeCCC
Confidence 9999998653
No 8
>PLN02197 pectinesterase
Probab=91.70 E-value=1.2 Score=40.25 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=45.6
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-c-------Cc-------
Q 045906 41 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------KG------- 95 (125)
Q Consensus 41 ~d~g~G---sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G-------~g------- 95 (125)
+.+|.| |+.+|+.. +..++++|=..|+.+ +.|.|+ .|++++|.|.+-++. + .|
T Consensus 280 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~Sa 357 (588)
T PLN02197 280 AKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSG 357 (588)
T ss_pred cCCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCccccee
Confidence 444555 56678863 333454444578864 557674 688999987654433 1 11
Q ss_pred -EEEeccCcEEEeeeEEecCC
Q 045906 96 -LRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 96 -l~i~~~~NVIIrNL~i~~~~ 115 (125)
+.+ .+++++.|||+|++..
T Consensus 358 T~~v-~~~~F~a~nitf~Nta 377 (588)
T PLN02197 358 TVQV-ESEGFMAKWIGFKNTA 377 (588)
T ss_pred EEEE-ECCcEEEEEeEEEeCC
Confidence 233 4899999999999864
No 9
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=91.25 E-value=0.6 Score=40.70 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=45.5
Q ss_pred EcCCCCCCCchHHHhhhc--CCCeEEEEeeeeEEEeCeeeeec------CCeEEEee-cCceEEecCc-EEEeccCcEEE
Q 045906 37 VTTLADDGPGSLREGCRM--KEPLWIVFEVSGTIHLRSHLSVS------SYKTIDGR-GQRVKLTGKG-LRLKECEHVII 106 (125)
Q Consensus 37 Vtt~~d~g~GsLr~a~~~--~~p~iIvf~vsGtI~l~~~l~V~------snkTI~G~-g~~~~i~G~g-l~i~~~~NVII 106 (125)
|+|.++ |.+|+.. ++-.+++ .+|+.+- .+|.+. .-.||.-+ +..+.|+|.. |+|. .+.++|
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L--~~Gty~~-~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v 71 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVL--ADGTYKD-VEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVV 71 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE---SEEEET--EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEE
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEE--CCceeec-ceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEE
Confidence 677777 9999985 4435555 6899883 456653 22677776 4578888754 7786 799999
Q ss_pred eeeEEecCCCC
Q 045906 107 CNLEFECGKGP 117 (125)
Q Consensus 107 rNL~i~~~~~~ 117 (125)
.+|.|+++...
T Consensus 72 ~GL~F~ng~~~ 82 (425)
T PF14592_consen 72 SGLKFKNGYTP 82 (425)
T ss_dssp ES-EEEEE---
T ss_pred eCeEEecCCCC
Confidence 99999876543
No 10
>PLN02773 pectinesterase
Probab=90.32 E-value=4.2 Score=34.11 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=41.7
Q ss_pred CchHHHhhhc-----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceE-EecC---------------------
Q 045906 45 PGSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK--------------------- 94 (125)
Q Consensus 45 ~GsLr~a~~~-----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~-i~G~--------------------- 94 (125)
--|+.+||.. +.+.+|.+ ..|+.+ ++|.|+ .|+||+|.+..-+ |...
T Consensus 17 f~TIq~Aida~P~~~~~~~~I~I-k~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~ 93 (317)
T PLN02773 17 YCTVQDAIDAVPLCNRCRTVIRV-APGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFG 93 (317)
T ss_pred ccCHHHHHhhchhcCCceEEEEE-eCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccC
Confidence 3456777753 23444442 478764 667773 5789999875333 3211
Q ss_pred --cEEEeccCcEEEeeeEEecCC
Q 045906 95 --GLRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 95 --gl~i~~~~NVIIrNL~i~~~~ 115 (125)
-+.+ .++|++.+||+|++..
T Consensus 94 SaTv~v-~a~~f~a~nlT~~Nt~ 115 (317)
T PLN02773 94 CGTVIV-EGEDFIAENITFENSA 115 (317)
T ss_pred ceEEEE-ECCCeEEEeeEEEeCC
Confidence 1334 5899999999999764
No 11
>PLN02304 probable pectinesterase
Probab=89.70 E-value=2.1 Score=36.78 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=43.0
Q ss_pred chHHHhhhc----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEEe-c-------------CcEEEeccCcE
Q 045906 46 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT-G-------------KGLRLKECEHV 104 (125)
Q Consensus 46 GsLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i~-G-------------~gl~i~~~~NV 104 (125)
-|+.+|+.. +..++++|=..|+. .++|.| ++|+|+.|.|..-++. . ..+.+ .++|+
T Consensus 88 ~TIQ~AIdavP~~~~~r~vI~Ik~GvY--~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F 164 (379)
T PLN02304 88 TTVQSAVDAVGNFSQKRNVIWINSGIY--YEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNF 164 (379)
T ss_pred cCHHHHHhhCcccCCCcEEEEEeCeEe--EEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCe
Confidence 367778863 22234333357875 466777 4789999997654332 1 11333 48999
Q ss_pred EEeeeEEecCC
Q 045906 105 IICNLEFECGK 115 (125)
Q Consensus 105 IIrNL~i~~~~ 115 (125)
+.|||+|++..
T Consensus 165 ~a~nITf~Nta 175 (379)
T PLN02304 165 IAKNISFMNVA 175 (379)
T ss_pred EEEeeEEEecC
Confidence 99999999764
No 12
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=89.61 E-value=2.6 Score=31.17 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=29.4
Q ss_pred HHHhh--h-cCCCeEEEEeeeeEEEeCeeeeecCCeEEEeecCc
Q 045906 48 LREGC--R-MKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQR 88 (125)
Q Consensus 48 Lr~a~--~-~~~p~iIvf~vsGtI~l~~~l~V~snkTI~G~g~~ 88 (125)
|.+|+ . .....+|+| =.|+...+..|.+.|+++|.|.|..
T Consensus 21 iq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~~ 63 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGGN 63 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTT
T ss_pred HHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCCC
Confidence 88888 2 345566665 5899999999999999999998763
No 13
>PLN02682 pectinesterase family protein
Probab=89.58 E-value=2.9 Score=35.84 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=42.2
Q ss_pred chHHHhhhc-----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEEe-c-------------------CcEE
Q 045906 46 GSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT-G-------------------KGLR 97 (125)
Q Consensus 46 GsLr~a~~~-----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i~-G-------------------~gl~ 97 (125)
-|..+|+.. +.+.+|.+ ..|+. .++|.| .+|+||.|.|.+-++. . .-+.
T Consensus 83 ~TIQ~AIdavP~~~~~r~vI~I-k~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~ 159 (369)
T PLN02682 83 TTIQAAIDSLPVINLVRVVIKV-NAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFA 159 (369)
T ss_pred cCHHHHHhhccccCCceEEEEE-eCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEE
Confidence 356678863 23344442 46876 466777 4789999997543332 1 0134
Q ss_pred EeccCcEEEeeeEEecCC
Q 045906 98 LKECEHVIICNLEFECGK 115 (125)
Q Consensus 98 i~~~~NVIIrNL~i~~~~ 115 (125)
+ .++|++.+||+|++..
T Consensus 160 v-~a~~F~a~nlTf~Nt~ 176 (369)
T PLN02682 160 V-NSPYFIAKNITFKNTA 176 (369)
T ss_pred E-ECCCeEEEeeEEEccc
Confidence 4 4899999999999854
No 14
>PLN02665 pectinesterase family protein
Probab=89.49 E-value=4.7 Score=34.51 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=43.4
Q ss_pred CchHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCce-EEecC------------cEEEeccCcE
Q 045906 45 PGSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRV-KLTGK------------GLRLKECEHV 104 (125)
Q Consensus 45 ~GsLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~-~i~G~------------gl~i~~~~NV 104 (125)
--|+.+|+.. +..++++|=..|+.+ ++|.|+ +|+|+.|.+..- .|+.. .+.+ .++|+
T Consensus 80 f~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F 156 (366)
T PLN02665 80 FKTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYF 156 (366)
T ss_pred ccCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCe
Confidence 4467788863 222444443578764 667774 678999986533 33321 1334 58999
Q ss_pred EEeeeEEecCC
Q 045906 105 IICNLEFECGK 115 (125)
Q Consensus 105 IIrNL~i~~~~ 115 (125)
+.+||+|++..
T Consensus 157 ~a~nitf~Nta 167 (366)
T PLN02665 157 MAANIIIKNSA 167 (366)
T ss_pred EEEeeEEEeCC
Confidence 99999999853
No 15
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=88.00 E-value=2.9 Score=37.39 Aligned_cols=72 Identities=21% Similarity=0.416 Sum_probs=46.9
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEE-ecC-----c--------E
Q 045906 41 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------L 96 (125)
Q Consensus 41 ~d~g~G---sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i-~G~-----g--------l 96 (125)
+.+|.| ++.+|+.. +..++|+|=..|+.+ ++|.|+ +|+|++|.|.+-++ ++. + +
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 334555 45567753 334555554688764 567763 78999999865433 331 1 4
Q ss_pred EEeccCcEEEeeeEEecCC
Q 045906 97 RLKECEHVIICNLEFECGK 115 (125)
Q Consensus 97 ~i~~~~NVIIrNL~i~~~~ 115 (125)
.+ .++|++.|||+|++..
T Consensus 313 ~v-~~~~F~a~nitf~Nta 330 (541)
T PLN02416 313 AV-SGEGFLARDITIENTA 330 (541)
T ss_pred EE-ECCCeEEEeeEEEECC
Confidence 44 4899999999999764
No 16
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=86.37 E-value=3.1 Score=37.63 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=43.0
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-----c--------EEEeccCcEE
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------LRLKECEHVI 105 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-----g--------l~i~~~~NVI 105 (125)
|+.+|+.. +..++++|=..|+..-. .|.|+ .|++++|.|.+-++. +. + +.+ .++|++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F~ 363 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGFI 363 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCEE
Confidence 45668753 33345544457887442 37774 688999998654433 32 1 223 589999
Q ss_pred EeeeEEecCC
Q 045906 106 ICNLEFECGK 115 (125)
Q Consensus 106 IrNL~i~~~~ 115 (125)
.|||+|++..
T Consensus 364 a~~itf~Nta 373 (587)
T PLN02484 364 ARDMTFENWA 373 (587)
T ss_pred EEeeEEEECC
Confidence 9999999764
No 17
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=86.32 E-value=4.7 Score=36.14 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-------------cE
Q 045906 41 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GL 96 (125)
Q Consensus 41 ~d~g~G---sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-------------gl 96 (125)
+.+|.| +..+|+.. +..++++|=..|+.. ++|.|+ .|+|++|.|.+-++. +. .+
T Consensus 223 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 300 (530)
T PLN02933 223 AIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATV 300 (530)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEE
Confidence 334555 55678753 223444443578875 567774 678999997653333 21 13
Q ss_pred EEeccCcEEEeeeEEecCC
Q 045906 97 RLKECEHVIICNLEFECGK 115 (125)
Q Consensus 97 ~i~~~~NVIIrNL~i~~~~ 115 (125)
.+ .++|++.|||+|++..
T Consensus 301 ~v-~a~~F~a~nitf~Nta 318 (530)
T PLN02933 301 GV-KGKGFIAKDISFVNYA 318 (530)
T ss_pred EE-ECCCEEEEeeEEEECC
Confidence 33 4899999999999764
No 18
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=85.81 E-value=6.6 Score=33.96 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=55.6
Q ss_pred ceEEEcCCCCCCCchHHHhhhcCCCeEEEEeeeeEEEeCeeeeecCCeEEEeecCceEEecC---cEEEe---------c
Q 045906 33 PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGK---GLRLK---------E 100 (125)
Q Consensus 33 ~~~~Vtt~~d~g~GsLr~a~~~~~p~iIvf~vsGtI~l~~~l~V~snkTI~G~g~~~~i~G~---gl~i~---------~ 100 (125)
++|.+-=.+| |.+|+.+-. + |..+=.-+...++.|.|.+..+|+|.|+.+.+.+- +|++. +
T Consensus 47 kt~~~~P~eD-----le~~I~~ha-K-VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHA-K-VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcC-E-EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 4566666777 999998765 2 23333445566788999999999999998888642 35543 5
Q ss_pred cCcEEEeeeEEecCC
Q 045906 101 CEHVIICNLEFECGK 115 (125)
Q Consensus 101 ~~NVIIrNL~i~~~~ 115 (125)
-.+|.+.|++|+..+
T Consensus 120 M~~VtF~ni~F~~~~ 134 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD 134 (386)
T ss_pred eeeeEEEEEEEecCC
Confidence 689999999998764
No 19
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=85.62 E-value=6.4 Score=35.51 Aligned_cols=71 Identities=23% Similarity=0.465 Sum_probs=44.9
Q ss_pred CCCCc---hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceE-EecC-----c---------E
Q 045906 42 DDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-----G---------L 96 (125)
Q Consensus 42 d~g~G---sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~-i~G~-----g---------l 96 (125)
.+|.| |..+|+.. +..++++|=..|+.+ +.|.|+ .|+|++|.|.+-+ |++. + +
T Consensus 265 ~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~ 342 (572)
T PLN02990 265 QDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATV 342 (572)
T ss_pred CCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEE
Confidence 34545 56678863 223444443578764 567774 6889999986433 3311 1 2
Q ss_pred EEeccCcEEEeeeEEecCC
Q 045906 97 RLKECEHVIICNLEFECGK 115 (125)
Q Consensus 97 ~i~~~~NVIIrNL~i~~~~ 115 (125)
.+ .+++++.|||+|++..
T Consensus 343 ~v-~~~~F~a~nitf~Nta 360 (572)
T PLN02990 343 AI-NGDHFTAKNIGFENTA 360 (572)
T ss_pred EE-EcCCEEEEeeEEEeCC
Confidence 33 4899999999999765
No 20
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=85.58 E-value=3.5 Score=37.05 Aligned_cols=70 Identities=16% Similarity=0.355 Sum_probs=45.4
Q ss_pred CCCc---hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-------c------EEE
Q 045906 43 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------G------LRL 98 (125)
Q Consensus 43 ~g~G---sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-------g------l~i 98 (125)
+|.| +..+|+.. +..|+++|=..|+. ++.|.|+ .|++++|.|.+.++. +. + +.+
T Consensus 243 dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v 320 (548)
T PLN02301 243 DGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA 320 (548)
T ss_pred CCCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE
Confidence 4555 55667753 33345554468886 4567774 689999998654443 21 1 223
Q ss_pred eccCcEEEeeeEEecCC
Q 045906 99 KECEHVIICNLEFECGK 115 (125)
Q Consensus 99 ~~~~NVIIrNL~i~~~~ 115 (125)
.+++++.|||+|++..
T Consensus 321 -~~~~F~a~nitf~Nta 336 (548)
T PLN02301 321 -VGDGFIAQDIWFQNTA 336 (548)
T ss_pred -ECCceEEEeeEEEECC
Confidence 5899999999999764
No 21
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=85.26 E-value=7.4 Score=32.05 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=38.5
Q ss_pred chHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceE-EecC-------------cEEEeccCcE
Q 045906 46 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-------------GLRLKECEHV 104 (125)
Q Consensus 46 GsLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~-i~G~-------------gl~i~~~~NV 104 (125)
-++.+||.. +..++++|=..|+.+ ++|.|. +|++|+|.+..-+ |.+. .|.+ .++|+
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-cccce
Confidence 346677763 223344443588875 557775 5899999976433 4432 1445 48999
Q ss_pred EEeeeEEecCC
Q 045906 105 IICNLEFECGK 115 (125)
Q Consensus 105 IIrNL~i~~~~ 115 (125)
.++||+|++..
T Consensus 90 ~~~nit~~Nt~ 100 (298)
T PF01095_consen 90 TAENITFENTA 100 (298)
T ss_dssp EEEEEEEEEHC
T ss_pred eeeeeEEecCC
Confidence 99999999753
No 22
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=84.82 E-value=5.1 Score=36.32 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=43.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-----c--------EEEeccCcEE
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------LRLKECEHVI 105 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-----g--------l~i~~~~NVI 105 (125)
|..+|+.. +..++++|=..|+.+ ..|.|+ .|+|++|.|.+-++. +. + +.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 56678863 223444443578764 557774 588999998654433 21 1 233 589999
Q ss_pred EeeeEEecCC
Q 045906 106 ICNLEFECGK 115 (125)
Q Consensus 106 IrNL~i~~~~ 115 (125)
.|||+|++..
T Consensus 376 a~nitf~Nta 385 (596)
T PLN02745 376 AKSMGFRNTA 385 (596)
T ss_pred EEeeEEEECC
Confidence 9999999864
No 23
>PLN02916 pectinesterase family protein
Probab=84.02 E-value=6.3 Score=35.12 Aligned_cols=67 Identities=9% Similarity=0.199 Sum_probs=43.0
Q ss_pred chHHHhhhc-------CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-------------cEEEecc
Q 045906 46 GSLREGCRM-------KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GLRLKEC 101 (125)
Q Consensus 46 GsLr~a~~~-------~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-------------gl~i~~~ 101 (125)
-|..+|+.. +..++++|=..|+.+ ++|.|+ .|++++|.|.+-++. +. .+.+ .+
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~ 276 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG 276 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence 356677743 123444443578764 567774 578999998654443 21 1333 48
Q ss_pred CcEEEeeeEEecCC
Q 045906 102 EHVIICNLEFECGK 115 (125)
Q Consensus 102 ~NVIIrNL~i~~~~ 115 (125)
++++.|||+|++..
T Consensus 277 ~~F~A~nitf~Nta 290 (502)
T PLN02916 277 DGFWARDITFENTA 290 (502)
T ss_pred CCEEEEeeEEEeCC
Confidence 99999999999764
No 24
>PLN02497 probable pectinesterase
Probab=83.82 E-value=13 Score=31.43 Aligned_cols=66 Identities=9% Similarity=0.252 Sum_probs=42.2
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceE-Eec--------C-cEEEeccCcEEEeee
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVK-LTG--------K-GLRLKECEHVIICNL 109 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~-i~G--------~-gl~i~~~~NVIIrNL 109 (125)
|+.+|+.. +..++++|=..|+. .++|.| .+|+|+.|+|.+.+ |+. . .+.+ .++|++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 56778753 22333333357876 456777 37899999975433 331 1 2444 5899999999
Q ss_pred EEecCC
Q 045906 110 EFECGK 115 (125)
Q Consensus 110 ~i~~~~ 115 (125)
+|++..
T Consensus 123 T~~Nt~ 128 (331)
T PLN02497 123 TFANSY 128 (331)
T ss_pred EEEeCC
Confidence 999764
No 25
>PLN02634 probable pectinesterase
Probab=83.44 E-value=16 Score=31.34 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=42.5
Q ss_pred chHHHhhhc-----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEEe-c-------------------CcEE
Q 045906 46 GSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT-G-------------------KGLR 97 (125)
Q Consensus 46 GsLr~a~~~-----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i~-G-------------------~gl~ 97 (125)
-|..+|+.. +.+.+|. =..|+. .++|.| .+|+|+.|.|...++. . ..+.
T Consensus 69 ~TIQaAIda~P~~~~~r~vI~-Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~ 145 (359)
T PLN02634 69 RSVQDAVDSVPKNNTMSVTIK-INAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVT 145 (359)
T ss_pred cCHHHHHhhCcccCCccEEEE-EeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEE
Confidence 356678763 2333443 257885 455766 4788999998655543 1 0133
Q ss_pred EeccCcEEEeeeEEecCC
Q 045906 98 LKECEHVIICNLEFECGK 115 (125)
Q Consensus 98 i~~~~NVIIrNL~i~~~~ 115 (125)
+ .++|++.+||+|++..
T Consensus 146 V-~a~~F~a~niTf~Nta 162 (359)
T PLN02634 146 V-YANYFTARNISFKNTA 162 (359)
T ss_pred E-ECCCeEEEeCeEEeCC
Confidence 4 4899999999999764
No 26
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=83.36 E-value=5.9 Score=35.49 Aligned_cols=71 Identities=20% Similarity=0.399 Sum_probs=44.9
Q ss_pred CCCCc---hHHHhhhc------CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-----c--------
Q 045906 42 DDGPG---SLREGCRM------KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G-------- 95 (125)
Q Consensus 42 d~g~G---sLr~a~~~------~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-----g-------- 95 (125)
.+|.| |..+|+.. +..++++|=..|+.+ +.|.|+ .|+|++|.|.+-++. +. +
T Consensus 229 ~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT 306 (539)
T PLN02995 229 KDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSAT 306 (539)
T ss_pred CCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEE
Confidence 34555 56678853 122444433578864 456663 689999998654443 21 1
Q ss_pred EEEeccCcEEEeeeEEecCC
Q 045906 96 LRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 96 l~i~~~~NVIIrNL~i~~~~ 115 (125)
+.+ .+++++.|||+|++..
T Consensus 307 ~~v-~~~~F~a~nitf~Nta 325 (539)
T PLN02995 307 AGI-EGLHFIAKGITFRNTA 325 (539)
T ss_pred EEE-ECCCeEEEeeEEEeCC
Confidence 233 5899999999999764
No 27
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=81.65 E-value=9 Score=32.98 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=22.9
Q ss_pred cCcEEEeccCcEEEeeeEEecCCCCCCCeeeeC
Q 045906 93 GKGLRLKECEHVIICNLEFECGKGPDADAIQIK 125 (125)
Q Consensus 93 G~gl~i~~~~NVIIrNL~i~~~~~~~~DaI~I~ 125 (125)
..|+.+..++||.|+|..|+.+ .|||.||
T Consensus 205 tDGidi~~s~nV~I~n~~I~~G----DDcIaik 233 (404)
T PLN02188 205 TDGIHIERSSGVYISDSRIGTG----DDCISIG 233 (404)
T ss_pred CCcEeeeCcccEEEEeeEEeCC----CcEEEEc
Confidence 3578888888999999988876 4788775
No 28
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=81.63 E-value=8.2 Score=34.52 Aligned_cols=66 Identities=12% Similarity=0.284 Sum_probs=42.0
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceE-EecC-----c--------EEEeccCcEE
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-----G--------LRLKECEHVI 105 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~-i~G~-----g--------l~i~~~~NVI 105 (125)
++.+|+.. +..++++|=..|+.+ ++|.|+ .|+|++|.|.+-+ |++. | +.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 56678753 222344443578764 567774 5789999976433 3311 1 233 489999
Q ss_pred EeeeEEecCC
Q 045906 106 ICNLEFECGK 115 (125)
Q Consensus 106 IrNL~i~~~~ 115 (125)
.|||+|++..
T Consensus 297 a~nitf~Nta 306 (520)
T PLN02201 297 ARDITFQNTA 306 (520)
T ss_pred EEeeEEEECC
Confidence 9999999764
No 29
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=81.38 E-value=8.2 Score=34.64 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=46.2
Q ss_pred CCCCCc---hHHHhhhc-----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEE-ecC-----c--------
Q 045906 41 ADDGPG---SLREGCRM-----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKL-TGK-----G-------- 95 (125)
Q Consensus 41 ~d~g~G---sLr~a~~~-----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i-~G~-----g-------- 95 (125)
+.+|.| +..+|+.. +..++++|=..|+.+ ++|.| .+|+|++|.|.+-++ ++. +
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 334544 55668852 223454444578864 55767 378999999865444 321 1
Q ss_pred EEEeccCcEEEeeeEEecCC
Q 045906 96 LRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 96 l~i~~~~NVIIrNL~i~~~~ 115 (125)
+.+ .++|++.|||+|++..
T Consensus 308 v~v-~~~~F~a~nitf~Nta 326 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSA 326 (529)
T ss_pred EEE-EcCCeEEEeeEEEecC
Confidence 233 5899999999999874
No 30
>PLN02671 pectinesterase
Probab=81.34 E-value=25 Score=30.10 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=40.9
Q ss_pred hHHHhhhc-----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecC---ceEEecC-------------------cE
Q 045906 47 SLREGCRM-----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTGK-------------------GL 96 (125)
Q Consensus 47 sLr~a~~~-----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~---~~~i~G~-------------------gl 96 (125)
|..+|+.. +.+.+|.+ ..|+. .++|.| .+|+|++|.+. +..|+.. .+
T Consensus 73 TIQ~AIdavP~~~~~~~~I~I-k~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYI-LPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred CHHHHHHhchhcCCccEEEEE-eCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 56678753 23444442 57875 466777 37789999863 4445411 13
Q ss_pred EEeccCcEEEeeeEEecC
Q 045906 97 RLKECEHVIICNLEFECG 114 (125)
Q Consensus 97 ~i~~~~NVIIrNL~i~~~ 114 (125)
.+ .++|++.+||+|++.
T Consensus 150 ~v-~a~~F~a~nitfeNt 166 (359)
T PLN02671 150 TI-ESDYFCATGITFENT 166 (359)
T ss_pred EE-ECCceEEEeeEEEcC
Confidence 33 589999999999986
No 31
>PLN03003 Probable polygalacturonase At3g15720
Probab=81.12 E-value=7.9 Score=34.07 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=8.8
Q ss_pred EeccCcEEEeeeEEec
Q 045906 98 LKECEHVIICNLEFEC 113 (125)
Q Consensus 98 i~~~~NVIIrNL~i~~ 113 (125)
+..++||.|+||+|..
T Consensus 166 i~~c~nV~i~~l~I~a 181 (456)
T PLN03003 166 ISECNYVTISSLRINA 181 (456)
T ss_pred EeccccEEEEEEEEeC
Confidence 3455566666665554
No 32
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=80.96 E-value=6 Score=35.34 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=42.5
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-----c--------EEEeccCcEE
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------LRLKECEHVI 105 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-----g--------l~i~~~~NVI 105 (125)
|..+|+.. +..++++|=..|+.+ +.|.|+ .|++++|.|.+-++. +. + +.+ .+++++
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 56678753 222444433578764 567774 788999998754444 21 1 222 479999
Q ss_pred EeeeEEecCC
Q 045906 106 ICNLEFECGK 115 (125)
Q Consensus 106 IrNL~i~~~~ 115 (125)
.|||+|++..
T Consensus 288 A~nitf~Nta 297 (509)
T PLN02488 288 GIDMCFRNTA 297 (509)
T ss_pred EEeeEEEECC
Confidence 9999999764
No 33
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=80.33 E-value=8.3 Score=34.64 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=43.5
Q ss_pred hHHHhhhc-----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEEe-c------Cc--------EEEeccCc
Q 045906 47 SLREGCRM-----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT-G------KG--------LRLKECEH 103 (125)
Q Consensus 47 sLr~a~~~-----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i~-G------~g--------l~i~~~~N 103 (125)
|..+|+.. ++.+.++|=..|+.+ +.|.| ..|++|+|.|.+-++. + .| +.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 56677752 123445544688865 45666 4789999998654443 1 12 333 5899
Q ss_pred EEEeeeEEecCCC
Q 045906 104 VIICNLEFECGKG 116 (125)
Q Consensus 104 VIIrNL~i~~~~~ 116 (125)
++.|||+|++..+
T Consensus 332 f~a~~it~~Ntag 344 (553)
T PLN02708 332 FMARDLTIQNTAG 344 (553)
T ss_pred eEEEeeEEEcCCC
Confidence 9999999998753
No 34
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=80.00 E-value=8.5 Score=34.50 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=42.7
Q ss_pred chHHHhhhc----CCCeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEE-ecC-----c--------EEEeccCcE
Q 045906 46 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKL-TGK-----G--------LRLKECEHV 104 (125)
Q Consensus 46 GsLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i-~G~-----g--------l~i~~~~NV 104 (125)
-++.+|+.. +..++++|=..|+. ...|.| ..|+|++|.|.+-++ ++. + +.+ .++|+
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F 321 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF 321 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence 345667753 33345554467876 345666 378899999765443 321 1 223 58999
Q ss_pred EEeeeEEecCC
Q 045906 105 IICNLEFECGK 115 (125)
Q Consensus 105 IIrNL~i~~~~ 115 (125)
+.|||+|++..
T Consensus 322 ~a~nit~~Nta 332 (537)
T PLN02506 322 IARDITFRNTA 332 (537)
T ss_pred EEEeeEEEeCC
Confidence 99999999764
No 35
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=79.54 E-value=12 Score=33.57 Aligned_cols=67 Identities=10% Similarity=0.261 Sum_probs=43.6
Q ss_pred chHHHhhhc---CC----CeEEEEeeeeEEEeCeeeee---cCCeEEEeecCceEEe-cC-------------cEEEecc
Q 045906 46 GSLREGCRM---KE----PLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT-GK-------------GLRLKEC 101 (125)
Q Consensus 46 GsLr~a~~~---~~----p~iIvf~vsGtI~l~~~l~V---~snkTI~G~g~~~~i~-G~-------------gl~i~~~ 101 (125)
-+..+|+.. .. .++++|=..|+.+ +.|.| ..|++++|.|.+-++. +. -+.+ .+
T Consensus 236 ~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~ 312 (538)
T PLN03043 236 TTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SG 312 (538)
T ss_pred cCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-EC
Confidence 356678753 11 1455554688874 55776 3789999998654443 21 1333 57
Q ss_pred CcEEEeeeEEecCC
Q 045906 102 EHVIICNLEFECGK 115 (125)
Q Consensus 102 ~NVIIrNL~i~~~~ 115 (125)
++++.|||+|++..
T Consensus 313 ~~F~a~~it~~Nta 326 (538)
T PLN03043 313 ERFVAVDVTFRNTA 326 (538)
T ss_pred CCEEEEeeEEEECC
Confidence 99999999999864
No 36
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=78.77 E-value=22 Score=32.07 Aligned_cols=72 Identities=14% Similarity=0.392 Sum_probs=45.0
Q ss_pred CCCCCc---hHHHhhhc-------CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC------------
Q 045906 41 ADDGPG---SLREGCRM-------KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK------------ 94 (125)
Q Consensus 41 ~d~g~G---sLr~a~~~-------~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~------------ 94 (125)
+.+|.| +..+|+.. +..++++|=..|+.+ +.|.|+ .|++++|.|.+-++. +.
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 344555 45567753 112444444578864 567773 678999998644433 21
Q ss_pred -cEEEeccCcEEEeeeEEecCC
Q 045906 95 -GLRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 95 -gl~i~~~~NVIIrNL~i~~~~ 115 (125)
-+.+ .+++++.|||+|++..
T Consensus 333 aT~~v-~~~~F~a~nitf~Nta 353 (566)
T PLN02713 333 ATFAV-VGQNFVAVNITFRNTA 353 (566)
T ss_pred eeEEE-ECCCeEEEeeEEEeCC
Confidence 1334 4799999999999864
No 37
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=77.07 E-value=7.9 Score=35.03 Aligned_cols=67 Identities=12% Similarity=0.255 Sum_probs=43.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-------------cEEEeccCcEE
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GLRLKECEHVI 105 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-------------gl~i~~~~NVI 105 (125)
|+.+|+.. +..++++|=..|+.+ +.|.|. .|++++|.|.+-++. +. -+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 55668753 233444444578764 567774 688999998654433 21 1223 479999
Q ss_pred EeeeEEecCCC
Q 045906 106 ICNLEFECGKG 116 (125)
Q Consensus 106 IrNL~i~~~~~ 116 (125)
.|||+|++..+
T Consensus 366 a~~itf~Ntag 376 (587)
T PLN02313 366 ARDITFQNTAG 376 (587)
T ss_pred EEeeEEEeCCC
Confidence 99999998653
No 38
>PLN02793 Probable polygalacturonase
Probab=76.76 E-value=13 Score=32.36 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=15.2
Q ss_pred CcEEEeccCcEEEeeeEEecCCCCCCCeeeeC
Q 045906 94 KGLRLKECEHVIICNLEFECGKGPDADAIQIK 125 (125)
Q Consensus 94 ~gl~i~~~~NVIIrNL~i~~~~~~~~DaI~I~ 125 (125)
.|+.+..++||.|+|-.|+.+ .|||.||
T Consensus 228 DGIdi~~s~nV~I~n~~I~~g----DDcIaik 255 (443)
T PLN02793 228 DGIHISASRGVVIKDSIVRTG----DDCISIV 255 (443)
T ss_pred CcEeeeccceEEEEeCEEeCC----CCeEEec
Confidence 345555555555555555543 3666554
No 39
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=76.29 E-value=14 Score=34.13 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=45.5
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-----c--------E
Q 045906 41 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 96 (125)
Q Consensus 41 ~d~g~G---sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-----g--------l 96 (125)
+.+|.| +..+|+.. +..++|+|=..|+. .++|.|. .|++++|.|.+-++. +. | +
T Consensus 255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~ 332 (670)
T PLN02217 255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV 332 (670)
T ss_pred CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence 344555 55678863 22344444357875 4567774 578899998654443 21 1 3
Q ss_pred EEeccCcEEEeeeEEecCC
Q 045906 97 RLKECEHVIICNLEFECGK 115 (125)
Q Consensus 97 ~i~~~~NVIIrNL~i~~~~ 115 (125)
.+ .+++++.|||+|++..
T Consensus 333 ~v-~g~~F~a~nitf~Nta 350 (670)
T PLN02217 333 AI-VGDHFIAKNIGFENTA 350 (670)
T ss_pred EE-ECCCeEEEeeEEEeCC
Confidence 33 4899999999999764
No 40
>PLN02314 pectinesterase
Probab=75.60 E-value=18 Score=32.74 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=43.5
Q ss_pred chHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEE-ecC-----c--------EEEeccCcE
Q 045906 46 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHV 104 (125)
Q Consensus 46 GsLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i-~G~-----g--------l~i~~~~NV 104 (125)
-|+.+|+.. +..++++|=..|+.+ +.|.|. .|+|++|.|.+-++ ++. | +.+ .++++
T Consensus 291 ~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F 367 (586)
T PLN02314 291 KTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGF 367 (586)
T ss_pred cCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCe
Confidence 356678863 333455544588864 556664 67899999865443 321 1 333 58999
Q ss_pred EEeeeEEecCC
Q 045906 105 IICNLEFECGK 115 (125)
Q Consensus 105 IIrNL~i~~~~ 115 (125)
+.|||+|++..
T Consensus 368 ~a~~itf~Nta 378 (586)
T PLN02314 368 IAKDMGFINTA 378 (586)
T ss_pred EEEeeEEEECC
Confidence 99999999864
No 41
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=75.52 E-value=16 Score=32.90 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=42.0
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCeeeeec---CCeEEEeecCceEEe-cC-------------cEEEeccCcEE
Q 045906 47 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GLRLKECEHVI 105 (125)
Q Consensus 47 sLr~a~~~----~~p~iIvf~vsGtI~l~~~l~V~---snkTI~G~g~~~~i~-G~-------------gl~i~~~~NVI 105 (125)
|..+|+.. +..++|+|=..|+.+ +.|.|. .|++++|.|.+-++. +. -+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 45567753 223444443588864 557674 678999998654443 11 1333 479999
Q ss_pred EeeeEEecCC
Q 045906 106 ICNLEFECGK 115 (125)
Q Consensus 106 IrNL~i~~~~ 115 (125)
.|||+|++..
T Consensus 349 a~~itf~Nta 358 (565)
T PLN02468 349 ARDMGFRNTA 358 (565)
T ss_pred EEEEEEEeCC
Confidence 9999999764
No 42
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=75.29 E-value=22 Score=31.09 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=14.1
Q ss_pred ccCcEEEeeeEEecCC
Q 045906 100 ECEHVIICNLEFECGK 115 (125)
Q Consensus 100 ~~~NVIIrNL~i~~~~ 115 (125)
.++|++.+||+|++..
T Consensus 204 ~ad~F~a~NLTf~Nta 219 (422)
T PRK10531 204 QNNGLQLQNLTIENTL 219 (422)
T ss_pred ECCCEEEEeeEEEeCC
Confidence 5799999999999874
No 43
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=75.11 E-value=15 Score=32.48 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.7
Q ss_pred hHHHhhhcCC-C-eEEEEeeeeEEEeCeeeeecCCeEEEeecCceE---EecCc-EE-EeccCcEEEeeeEEecCC
Q 045906 47 SLREGCRMKE-P-LWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK---LTGKG-LR-LKECEHVIICNLEFECGK 115 (125)
Q Consensus 47 sLr~a~~~~~-p-~iIvf~vsGtI~l~~~l~V~snkTI~G~g~~~~---i~G~g-l~-i~~~~NVIIrNL~i~~~~ 115 (125)
.|.+|+.+-. | ..|++ -.|+.. ...|.+.++.||.|+. +++ |.+.. +. -..++||-|++|+|++..
T Consensus 56 ALQaAIdaAa~gG~tV~L-p~G~Y~-~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLAL-PPGVYR-TGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGG 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEE-CCCcee-cccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCC
Confidence 3888876411 2 22332 356652 2568888999999983 453 66543 22 346899999999888654
No 44
>PLN02218 polygalacturonase ADPG
Probab=74.56 E-value=13 Score=32.23 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=15.9
Q ss_pred CcEEEeccCcEEEeeeEEecCCCCCCCeeeeC
Q 045906 94 KGLRLKECEHVIICNLEFECGKGPDADAIQIK 125 (125)
Q Consensus 94 ~gl~i~~~~NVIIrNL~i~~~~~~~~DaI~I~ 125 (125)
.|+.+..++||.|+|-.|+.+ .|||.||
T Consensus 243 DGIdi~ss~nV~I~n~~I~tG----DDcIaIk 270 (431)
T PLN02218 243 DGIHITNTQNIRVSNSIIGTG----DDCISIE 270 (431)
T ss_pred CcEeecccceEEEEccEEecC----CceEEec
Confidence 345555555666666555544 4666664
No 45
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=70.90 E-value=46 Score=26.99 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=10.1
Q ss_pred cEEEeccCcEEEeeeEEecC
Q 045906 95 GLRLKECEHVIICNLEFECG 114 (125)
Q Consensus 95 gl~i~~~~NVIIrNL~i~~~ 114 (125)
+++|.. .+..|+|-+|++.
T Consensus 116 Gi~Ies-s~~tI~Nntf~~~ 134 (246)
T PF07602_consen 116 GIWIES-SSPTIANNTFTNN 134 (246)
T ss_pred EEEEec-CCcEEEeeEEECC
Confidence 355542 3556666666654
No 46
>PLN03010 polygalacturonase
Probab=69.93 E-value=10 Score=32.86 Aligned_cols=62 Identities=31% Similarity=0.597 Sum_probs=32.2
Q ss_pred eEEEEee--------eeEEEeCee-----eee--cCCeEEEeecCceEEecCc---EEEeccCcEEEeeeEEecCC-CCC
Q 045906 58 LWIVFEV--------SGTIHLRSH-----LSV--SSYKTIDGRGQRVKLTGKG---LRLKECEHVIICNLEFECGK-GPD 118 (125)
Q Consensus 58 ~iIvf~v--------sGtI~l~~~-----l~V--~snkTI~G~g~~~~i~G~g---l~i~~~~NVIIrNL~i~~~~-~~~ 118 (125)
.||.|+- +|+|+...+ |.+ .+|.+|-| +++.+.. +.+..++||.|+||+|.... .++
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~g----itl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTING----ITSIDSPKNHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEee----eEEEcCCceEEEEeccccEEEEEEEEeCCCCCCC
Confidence 4676643 477776543 222 24455543 3344332 44556777777777777532 234
Q ss_pred CCeee
Q 045906 119 ADAIQ 123 (125)
Q Consensus 119 ~DaI~ 123 (125)
.|+|.
T Consensus 207 TDGiD 211 (409)
T PLN03010 207 TDGID 211 (409)
T ss_pred CCcee
Confidence 44443
No 47
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=69.04 E-value=39 Score=27.84 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=14.5
Q ss_pred CcEEEeccCcEEEeeeEEe
Q 045906 94 KGLRLKECEHVIICNLEFE 112 (125)
Q Consensus 94 ~gl~i~~~~NVIIrNL~i~ 112 (125)
.++.+.+++|++|||++++
T Consensus 78 ~GI~v~~s~~i~I~n~~i~ 96 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVE 96 (314)
T ss_pred CeEEEeCCCCEEEEeeEEE
Confidence 4677777888888888876
No 48
>PLN03010 polygalacturonase
Probab=67.62 E-value=11 Score=32.67 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=27.9
Q ss_pred CCeEEEeecCceEEecCc------EEEeccCcEEEeeeEEecCCC
Q 045906 78 SYKTIDGRGQRVKLTGKG------LRLKECEHVIICNLEFECGKG 116 (125)
Q Consensus 78 snkTI~G~g~~~~i~G~g------l~i~~~~NVIIrNL~i~~~~~ 116 (125)
.|.+|.|.| +|.|.| |++.+++|+.|++|++++.+.
T Consensus 139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~ 180 (409)
T PLN03010 139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPK 180 (409)
T ss_pred cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCc
Confidence 667777753 577654 667899999999999998764
No 49
>PLN02218 polygalacturonase ADPG
Probab=66.70 E-value=13 Score=32.39 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=18.0
Q ss_pred EeccCcEEEeeeEEecC-CCCCCCeeee
Q 045906 98 LKECEHVIICNLEFECG-KGPDADAIQI 124 (125)
Q Consensus 98 i~~~~NVIIrNL~i~~~-~~~~~DaI~I 124 (125)
+..++||.|+||+|... ..++.|+|.|
T Consensus 220 ~~~~~nV~i~~v~I~a~~~spNTDGIdi 247 (431)
T PLN02218 220 IEKCSNVQVSNVVVTAPADSPNTDGIHI 247 (431)
T ss_pred EEceeeEEEEEEEEeCCCCCCCCCcEee
Confidence 34567777777777653 2356788865
No 50
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=64.71 E-value=6.9 Score=32.21 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=23.0
Q ss_pred cCcEEEeccCcEEEeeeEEecCCCCCCCeeeeC
Q 045906 93 GKGLRLKECEHVIICNLEFECGKGPDADAIQIK 125 (125)
Q Consensus 93 G~gl~i~~~~NVIIrNL~i~~~~~~~~DaI~I~ 125 (125)
..|+.+..++||.|+|..|+.. .|||.||
T Consensus 142 tDGid~~~s~nv~I~n~~i~~g----DD~Iaik 170 (326)
T PF00295_consen 142 TDGIDIDSSKNVTIENCFIDNG----DDCIAIK 170 (326)
T ss_dssp --SEEEESEEEEEEESEEEESS----SESEEES
T ss_pred cceEEEEeeeEEEEEEeecccc----cCccccc
Confidence 3578888889999999999876 5888876
No 51
>PLN02155 polygalacturonase
Probab=64.69 E-value=25 Score=30.18 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=17.2
Q ss_pred CcEEEeccCcEEEeeeEEecCCCCCCCeeeeC
Q 045906 94 KGLRLKECEHVIICNLEFECGKGPDADAIQIK 125 (125)
Q Consensus 94 ~gl~i~~~~NVIIrNL~i~~~~~~~~DaI~I~ 125 (125)
.|+.+..++||.|+|-.|+.+ .|||.||
T Consensus 196 DGidi~~s~nV~I~~~~I~~g----DDcIaik 223 (394)
T PLN02155 196 DGFHVQFSTGVTFTGSTVQTG----DDCVAIG 223 (394)
T ss_pred CccccccceeEEEEeeEEecC----CceEEcC
Confidence 456665666666666666654 4666654
No 52
>PLN02793 Probable polygalacturonase
Probab=58.39 E-value=25 Score=30.70 Aligned_cols=28 Identities=29% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEeccCcEEEeeeEEecCC-CCCCCeeee
Q 045906 97 RLKECEHVIICNLEFECGK-GPDADAIQI 124 (125)
Q Consensus 97 ~i~~~~NVIIrNL~i~~~~-~~~~DaI~I 124 (125)
.+..++||.|+||+|.... .++.|+|.|
T Consensus 204 ~~~~~~nv~i~~l~I~~p~~spNTDGIdi 232 (443)
T PLN02793 204 AFTNCRRVTISGLKVIAPATSPNTDGIHI 232 (443)
T ss_pred EEEccCcEEEEEEEEECCCCCCCCCcEee
Confidence 3446778888888886543 356788875
No 53
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=55.81 E-value=29 Score=29.94 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=18.8
Q ss_pred EeccCcEEEeeeEEecCC-CCCCCeeee
Q 045906 98 LKECEHVIICNLEFECGK-GPDADAIQI 124 (125)
Q Consensus 98 i~~~~NVIIrNL~i~~~~-~~~~DaI~I 124 (125)
+..++||.|+||+|+... .++.|+|.+
T Consensus 183 ~~~~~~v~i~~v~I~~~~~spNtDGidi 210 (404)
T PLN02188 183 LVECRNFKGSGLKISAPSDSPNTDGIHI 210 (404)
T ss_pred EEccccEEEEEEEEeCCCCCCCCCcEee
Confidence 346788888888887543 356788865
No 54
>PLN03003 Probable polygalacturonase At3g15720
Probab=50.81 E-value=35 Score=30.06 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=18.5
Q ss_pred CcEEEeccCcEEEeeeEEecCCCCCCCeeeeC
Q 045906 94 KGLRLKECEHVIICNLEFECGKGPDADAIQIK 125 (125)
Q Consensus 94 ~gl~i~~~~NVIIrNL~i~~~~~~~~DaI~I~ 125 (125)
.|+.+..++||.|+|-.|+.+ .|||.||
T Consensus 189 DGIDi~~S~nV~I~n~~I~tG----DDCIaik 216 (456)
T PLN03003 189 DGIDVGASSNVVIQDCIIATG----DDCIAIN 216 (456)
T ss_pred CcEeecCcceEEEEecEEecC----CCeEEeC
Confidence 356666667777777777764 4777665
No 55
>PLN02155 polygalacturonase
Probab=49.93 E-value=30 Score=29.70 Aligned_cols=27 Identities=22% Similarity=0.618 Sum_probs=18.8
Q ss_pred EeccCcEEEeeeEEecCC-CCCCCeeee
Q 045906 98 LKECEHVIICNLEFECGK-GPDADAIQI 124 (125)
Q Consensus 98 i~~~~NVIIrNL~i~~~~-~~~~DaI~I 124 (125)
+..++||.|+||+|.... .++.|+|.+
T Consensus 173 ~~~~~nv~i~~v~I~~p~~~~NtDGidi 200 (394)
T PLN02155 173 LNGCTNVVVRNVKLVAPGNSPNTDGFHV 200 (394)
T ss_pred EECeeeEEEEEEEEECCCCCCCCCcccc
Confidence 446788888888887543 356788765
No 56
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=45.04 E-value=29 Score=30.73 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=23.8
Q ss_pred EEEeecCceEEecCcEEEeccCcEEEeeeEEecCC
Q 045906 81 TIDGRGQRVKLTGKGLRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 81 TI~G~g~~~~i~G~gl~i~~~~NVIIrNL~i~~~~ 115 (125)
||.|.|....-...++.+++++++.|+|.+|++..
T Consensus 123 tIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg 157 (455)
T TIGR03808 123 TLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG 157 (455)
T ss_pred EEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC
Confidence 44444433332344678889999999999999873
No 57
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=44.29 E-value=23 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.1
Q ss_pred CcceEEEcCCCCCCCchHHHhhhcCCCeEEE
Q 045906 31 HGPLYHVTTLADDGPGSLREGCRMKEPLWIV 61 (125)
Q Consensus 31 gg~~~~Vtt~~d~g~GsLr~a~~~~~p~iIv 61 (125)
.|..+++|+..| |+.|+...+++.+.
T Consensus 52 dGDlVTIts~~d-----L~~A~~~~~~~~l~ 77 (81)
T cd06401 52 DGDLITIFDSSD-----LSFAIQCSRILKLT 77 (81)
T ss_pred CCCEEEeccHHH-----HHHHHhcCcceEEE
Confidence 478899999999 99999988877554
No 58
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=42.97 E-value=39 Score=15.98 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=13.5
Q ss_pred CcEEEeeeEEecCCCCCCCeeee
Q 045906 102 EHVIICNLEFECGKGPDADAIQI 124 (125)
Q Consensus 102 ~NVIIrNL~i~~~~~~~~DaI~I 124 (125)
.++.|+|.+|++.. .++|.+
T Consensus 2 ~~~~i~~n~i~~~~---~~Gi~i 21 (26)
T smart00710 2 SNVTIENNTIRNNG---GDGIYI 21 (26)
T ss_pred CCEEEECCEEEeCC---CCcEEE
Confidence 57788888888764 346654
No 59
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=40.33 E-value=34 Score=30.86 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=24.1
Q ss_pred cCcEEEeccCcEEEeeeEEecCCCCCCCeeeeC
Q 045906 93 GKGLRLKECEHVIICNLEFECGKGPDADAIQIK 125 (125)
Q Consensus 93 G~gl~i~~~~NVIIrNL~i~~~~~~~~DaI~I~ 125 (125)
..||.+..++||.|.+.+|..+ .|||-||
T Consensus 287 tDG~d~~sc~NvlI~~~~fdtg----DD~I~ik 315 (542)
T COG5434 287 TDGFDPGSCSNVLIEGCRFDTG----DDCIAIK 315 (542)
T ss_pred CCccccccceeEEEeccEEecC----CceEEee
Confidence 3478888999999999999984 5888776
No 60
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=34.10 E-value=33 Score=28.19 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=19.7
Q ss_pred EEEeccCcEEEeeeEEecCC-CCCCCeeee
Q 045906 96 LRLKECEHVIICNLEFECGK-GPDADAIQI 124 (125)
Q Consensus 96 l~i~~~~NVIIrNL~i~~~~-~~~~DaI~I 124 (125)
+.+..++||.|+||+|+... .++.|+|.+
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~ 147 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPANSPNTDGIDI 147 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGGCTS--SEEE
T ss_pred EEEEccCCeEEcceEEEecCCCCCcceEEE
Confidence 55667899999999998653 256788764
No 61
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=33.02 E-value=3.2e+02 Score=23.93 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=32.4
Q ss_pred eeeEEEeCeeeeecCCeEEEeecCceEEecCc----EEEeccCcEEEeeeEEecCC
Q 045906 64 VSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG----LRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 64 vsGtI~l~~~l~V~snkTI~G~g~~~~i~G~g----l~i~~~~NVIIrNL~i~~~~ 115 (125)
++|+- ...+.|..-.|+-|. +++++.|.+ +++ .+-++|||.|++++..
T Consensus 39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg 90 (408)
T COG3420 39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTV-AAPDVIVEGLTVRGSG 90 (408)
T ss_pred Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEE-eCCCceeeeEEEecCC
Confidence 34543 344666666777776 456777543 566 4899999999999643
No 62
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=31.88 E-value=72 Score=23.32 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=14.2
Q ss_pred cEEEeccCcEEEeeeEEecC
Q 045906 95 GLRLKECEHVIICNLEFECG 114 (125)
Q Consensus 95 gl~i~~~~NVIIrNL~i~~~ 114 (125)
++.+...++++|+|.+|+++
T Consensus 201 gi~i~~~~~~~i~n~~i~~~ 220 (225)
T PF12708_consen 201 GINIEGGSNIIISNNTIENC 220 (225)
T ss_dssp SEEEEECSEEEEEEEEEESS
T ss_pred eEEEECCeEEEEEeEEEECC
Confidence 46666667777777777776
No 63
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=29.10 E-value=46 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=21.4
Q ss_pred CcceEEEcCCCCCCCchHHHhhhcCCCeEEEE
Q 045906 31 HGPLYHVTTLADDGPGSLREGCRMKEPLWIVF 62 (125)
Q Consensus 31 gg~~~~Vtt~~d~g~GsLr~a~~~~~p~iIvf 62 (125)
-|.++.+++.++ |++++.++++.++.|
T Consensus 3 ~g~v~~i~~~~~-----~~~~i~~~~~vvV~f 29 (113)
T cd02989 3 HGKYREVSDEKE-----FFEIVKSSERVVCHF 29 (113)
T ss_pred CCCeEEeCCHHH-----HHHHHhCCCcEEEEE
Confidence 368888988888 999998877666665
No 64
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=24.96 E-value=1.9e+02 Score=23.46 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=14.9
Q ss_pred EEEeccCcEEEeeeEEecCC
Q 045906 96 LRLKECEHVIICNLEFECGK 115 (125)
Q Consensus 96 l~i~~~~NVIIrNL~i~~~~ 115 (125)
+.|..+++..|+.++|+...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n 110 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPN 110 (246)
T ss_pred EEEEecCCCEEEEEEEEcCC
Confidence 55666788888888888764
No 65
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=22.36 E-value=1.9e+02 Score=22.12 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=18.5
Q ss_pred EecCcEEEeccCcEEEeeeEEecC
Q 045906 91 LTGKGLRLKECEHVIICNLEFECG 114 (125)
Q Consensus 91 i~G~gl~i~~~~NVIIrNL~i~~~ 114 (125)
-.+..+.+.+++||.|=|.+|+..
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~ 96 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWG 96 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEET
T ss_pred cCCCeEEEEecccEEEeccEEecc
Confidence 345679999999999999999987
Done!