BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045909
         (268 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H2H|A Chain A, Crystal Structure Of G231f Mutant Of The Rice Cell Wall
           Degrading Esterase Lipa From Xanthomonas Oryzae
          Length = 397

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 127 SIYKNASHTEMVKKFKVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKN 177
           S Y    HT M  + ++  +   E   V   P+   YA+E  F+D     N
Sbjct: 173 SGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALEQTFLDSWSGSN 223


>pdb|3H2I|A Chain A, Crystal Structure Of N228w Mutant Of The Rice Cell Wall
           Degrading Esterase Lipa From Xanthomonas Oryzae
          Length = 397

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 127 SIYKNASHTEMVKKFKVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKN 177
           S Y    HT M  + ++  +   E   V   P+   YA+E  F+D     N
Sbjct: 173 SGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALEQTFLDSWSGSN 223


>pdb|3H2G|A Chain A, Crystal Structure Of A Rice Cell Wall Degrading Esterase
           Lipa From Xanthomonas Oryzae
 pdb|3H2J|A Chain A, Crystal Structure Of The Rice Cell Wall Degrading Esterase
           Lipa From Xanthomonas Oryzae
 pdb|3H2K|A Chain A, Crystal Structure Of A Ligand-Bound Form Of The Rice Cell
           Wall Degrading Esterase Lipa From Xanthomonas Oryzae
          Length = 397

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 127 SIYKNASHTEMVKKFKVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKN 177
           S Y    HT M  + ++  +   E   V   P+   YA+E  F+D     N
Sbjct: 173 SGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALEQTFLDSWSGSN 223


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,534,971
Number of Sequences: 62578
Number of extensions: 241917
Number of successful extensions: 459
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 3
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)