Query 045909
Match_columns 268
No_of_seqs 182 out of 495
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 99.9 2.6E-26 5.7E-31 224.5 10.0 123 133-259 107-232 (464)
2 PF03016 Exostosin: Exostosin 99.9 1.2E-23 2.6E-28 188.8 8.6 117 138-262 2-128 (302)
3 KOG2264 Exostosin EXT1L [Signa 84.6 7.5 0.00016 40.8 9.9 136 87-250 128-279 (907)
4 PF00919 UPF0004: Uncharacteri 76.9 3.6 7.8E-05 32.7 3.8 42 142-193 1-42 (98)
5 PRK14473 F0F1 ATP synthase sub 50.0 17 0.00037 30.8 3.1 34 1-35 1-34 (164)
6 KOG4178 Soluble epoxide hydrol 38.6 38 0.00083 32.9 3.8 40 212-262 92-131 (322)
7 PRK14862 rimO ribosomal protei 33.0 60 0.0013 32.1 4.4 48 137-194 4-51 (440)
8 KOG3088 Secretory carrier memb 30.1 58 0.0013 31.5 3.5 24 83-106 70-93 (313)
9 PRK14333 (dimethylallyl)adenos 30.1 69 0.0015 31.7 4.2 43 142-194 8-50 (448)
10 PRK14332 (dimethylallyl)adenos 29.8 78 0.0017 31.5 4.5 47 138-194 8-54 (449)
11 PF06057 VirJ: Bacterial virul 29.8 44 0.00094 30.2 2.5 61 193-266 30-90 (192)
12 PRK14337 (dimethylallyl)adenos 29.5 69 0.0015 31.7 4.1 42 142-194 5-46 (446)
13 PLN02679 hydrolase, alpha/beta 28.8 2.7E+02 0.0058 26.2 7.8 36 214-260 136-171 (360)
14 PRK14338 (dimethylallyl)adenos 28.5 81 0.0017 31.4 4.4 43 142-194 22-64 (459)
15 PRK14340 (dimethylallyl)adenos 27.5 84 0.0018 31.2 4.3 43 142-194 8-50 (445)
16 PF13134 DUF3948: Protein of u 26.8 51 0.0011 22.1 1.8 21 1-21 12-32 (35)
17 KOG2565 Predicted hydrolases o 26.6 1E+02 0.0022 31.2 4.6 51 203-264 199-249 (469)
18 PF13704 Glyco_tranf_2_4: Glyc 26.0 61 0.0013 24.3 2.4 24 221-252 5-28 (97)
19 PRK14335 (dimethylallyl)adenos 25.7 95 0.0021 30.9 4.3 43 142-194 2-44 (455)
20 PRK14336 (dimethylallyl)adenos 25.6 97 0.0021 30.4 4.3 43 142-194 3-45 (418)
21 TIGR03612 RutA pyrimidine util 25.4 90 0.002 29.9 4.0 31 237-268 318-348 (355)
22 TIGR01578 MiaB-like-B MiaB-lik 24.6 94 0.002 30.5 4.0 35 157-194 8-43 (420)
23 TIGR00089 RNA modification enz 23.8 1E+02 0.0022 30.1 4.1 35 157-194 8-43 (429)
24 PRK14334 (dimethylallyl)adenos 23.8 1.1E+02 0.0025 30.1 4.4 42 142-194 2-44 (440)
25 PF09671 Spore_GerQ: Spore coa 23.6 42 0.00091 26.5 1.1 16 240-255 45-60 (81)
26 PF13131 DUF3951: Protein of u 23.2 1E+02 0.0022 22.5 3.0 28 8-35 6-33 (53)
27 PRK10673 acyl-CoA esterase; Pr 22.3 1.4E+02 0.0031 25.4 4.3 22 242-263 79-100 (255)
28 PRK14328 (dimethylallyl)adenos 21.8 1.2E+02 0.0027 29.8 4.2 43 142-194 3-45 (439)
29 TIGR02728 spore_gerQ spore coa 21.2 50 0.0011 26.1 1.1 16 240-255 43-58 (82)
30 PF08370 PDR_assoc: Plant PDR 20.0 1E+02 0.0022 23.2 2.5 29 5-35 34-62 (65)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.93 E-value=2.6e-26 Score=224.47 Aligned_cols=123 Identities=37% Similarity=0.652 Sum_probs=108.3
Q ss_pred ChHHhhccCeEEEecCCCCCccccC--CCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEeeecceee-eeeecccc
Q 045909 133 SHTEMVKKFKVWIYKEGEHPTVHIG--PMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLPFSVANVV-QYVYQPIT 209 (268)
Q Consensus 133 sY~eMe~~lKIYVY~eg~~p~~h~~--p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVPfs~~~l~-~~ly~p~~ 209 (268)
+|..|++.+|+|+|.+|+.+.+|.+ +++++|+.|++|+..|+.+.++|||.||+|||+||||||+++.+ ++++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~ 186 (464)
T KOG1021|consen 107 SYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDE 186 (464)
T ss_pred hhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCc
Confidence 9999999999999999988899987 78999999999999997435789999999999999999999876 66677653
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcCcccccCCCCceEEEccCCchhhHHH
Q 045909 210 TVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDWVSTYIY 259 (268)
Q Consensus 210 ~~~~~~~~~L~~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHDwG~~~~~ 259 (268)
. ....+...+.+||..+.++||||||++|+|||+|+|||||.+...
T Consensus 187 ~----~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~ 232 (464)
T KOG1021|consen 187 R----VNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRR 232 (464)
T ss_pred c----cchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeec
Confidence 2 334567778888888889999999999999999999999998874
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=99.89 E-value=1.2e-23 Score=188.75 Aligned_cols=117 Identities=28% Similarity=0.456 Sum_probs=89.5
Q ss_pred hccCeEEEecCCCC----------CccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEeeecceeeeeeecc
Q 045909 138 VKKFKVWIYKEGEH----------PTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLPFSVANVVQYVYQP 207 (268)
Q Consensus 138 e~~lKIYVY~eg~~----------p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVPfs~~~l~~~ly~p 207 (268)
.++||||||+++.+ ...+.....++|++|.+|++.|+ ++++||.||+|||+||||++.++........
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~--~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~ 79 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVILHEALL--NSPFRTDDPEEADLFFVPFYSSCYFHHWWGS 79 (302)
T ss_pred CCCCEEEEEeCCccccccceeccccccCCCcccccchHHHHHHHHHH--hCCcEeCCHHHCeEEEEEcccccccccccCC
Confidence 47899999999922 11122334689999999999997 6889999999999999999999864111110
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhhcCcccccCCCCceEEEccCCchhhHHHHhh
Q 045909 208 ITTVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDWVSTYIYVLL 262 (268)
Q Consensus 208 ~~~~~~~~~~~L~~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHDwG~~~~~~l~ 262 (268)
-.....+..+.+++..+.+++|||||++|+||||+.+||||.|......
T Consensus 80 ------~~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~ 128 (302)
T PF03016_consen 80 ------PNSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNP 128 (302)
T ss_pred ------ccchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccH
Confidence 1112345667777777778999999999999999999999988766544
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=84.62 E-value=7.5 Score=40.80 Aligned_cols=136 Identities=15% Similarity=0.302 Sum_probs=72.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCCCCCC------C-Cccccc----cCccccCC---ChHHhhccCeEEEecCCCCC
Q 045909 87 ARSIRVEEDLAQARAAIRKAIHLQNYTSHSH------R-TETFIP----TGSIYKNA---SHTEMVKKFKVWIYKEGEHP 152 (268)
Q Consensus 87 s~lervE~~L~~Ara~I~~A~~~~n~~~~~~------~-d~~yvP----~~~iYrN~---sY~eMe~~lKIYVY~eg~~p 152 (268)
..+++++-+..+|+.+.+++....|-.-.+- + +...-| .++--+|- |--..-..|-||||+...
T Consensus 128 ~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~pp~~~~~c~lhncfdySRCsltSgfPVYvyd~D~-- 205 (907)
T KOG2264|consen 128 LELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEPPSQISPCQLHNCFDYSRCSLTSGFPVYVYDSDI-- 205 (907)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCcccCCCccccCcccchhccccccccccCCceeEEeccce--
Confidence 4566677777788888888765443211000 0 000101 11222222 333455688999999653
Q ss_pred ccccCCCCCCchhHHHHHHHHhh--cCCCcccCCcCCcceEEEeeecceeeeeeeccccCCCCcchHHHHHHHHHHHHHH
Q 045909 153 TVHIGPMHNKYAIEGQFIDEMES--KNNPFRASHPDEAHAFFLPFSVANVVQYVYQPITTVKDYSRDRLQRLLTDYVTVV 230 (268)
Q Consensus 153 ~~h~~p~~~iYssEg~F~~eL~~--~~s~fRT~DPeeAhlFFVPfs~~~l~~~ly~p~~~~~~~~~~~L~~~l~dyV~~I 230 (268)
+.. | |+.++|.-+-+.. +...+.|+||++|=++.+=. +. .-.|.+. .. ..+.+..
T Consensus 206 -~~~----G-~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lv--ge----~q~P~~l----~p----~elekly--- 262 (907)
T KOG2264|consen 206 -ITS----G-QSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLV--GE----IQSPVVL----TP----AELEKLY--- 262 (907)
T ss_pred -eec----c-cchHHHHHHHHHHhcccceeEeeCCCccEEEEEEe--cc----ccCCCcC----Ch----Hhhhhhh---
Confidence 111 2 3334344433331 45578999999998776532 11 1233211 11 2233322
Q ss_pred hhcCcccccCCCCceEEEcc
Q 045909 231 ADKYPYWNRSNGADHFMVSC 250 (268)
Q Consensus 231 a~kyPyWNRS~GaDHF~Vsc 250 (268)
.-|+| |+.|++|+++--
T Consensus 263 --slp~w-~~dg~Nhvl~Nl 279 (907)
T KOG2264|consen 263 --SLPHW-RTDGFNHVLFNL 279 (907)
T ss_pred --cCccc-cCCCcceEEEEc
Confidence 56999 789999999853
No 4
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=76.87 E-value=3.6 Score=32.75 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=29.1
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEE
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFL 193 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFV 193 (268)
|||+...| +-.++|-+| .....|. ...--.|.||++||+..|
T Consensus 1 Kv~i~T~G--------C~~N~~Dse-~i~~~l~-~~G~~~~~~~e~AD~iii 42 (98)
T PF00919_consen 1 KVYIETLG--------CQMNQYDSE-RIASILQ-AAGYEIVDDPEEADVIII 42 (98)
T ss_pred CEEEEECC--------CcccHHHHH-HHHHHHH-hcCCeeecccccCCEEEE
Confidence 45655544 446788888 6666665 233458999999999965
No 5
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=50.00 E-value=17 Score=30.84 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHhcCCcccccc
Q 045909 1 METLGCNISLLLLQAFLLFLILSLTFSSPFTEKHV 35 (268)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (268)
||-+|-|.+.++.+ ++-|++|.+.+.-=++.|..
T Consensus 1 ~~~~~~~~~~~~~~-~inflil~~lL~~fl~kpi~ 34 (164)
T PRK14473 1 MEKLGINLGLLIAQ-LINFLLLIFLLRTFLYRPVL 34 (164)
T ss_pred CCcccCcHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 89999999888887 66666666655444444433
No 6
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=38.63 E-value=38 Score=32.90 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCcchHHHHHHHHHHHHHHhhcCcccccCCCCceEEEccCCchhhHHHHhh
Q 045909 212 KDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDWVSTYIYVLL 262 (268)
Q Consensus 212 ~~~~~~~L~~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHDwG~~~~~~l~ 262 (268)
..|+.+.+...+..++++ .|-+-+.+.+||||+-..-.++
T Consensus 92 ~~Yt~~~l~~di~~lld~-----------Lg~~k~~lvgHDwGaivaw~la 131 (322)
T KOG4178|consen 92 SEYTIDELVGDIVALLDH-----------LGLKKAFLVGHDWGAIVAWRLA 131 (322)
T ss_pred ceeeHHHHHHHHHHHHHH-----------hccceeEEEeccchhHHHHHHH
Confidence 346667788888888874 4578899999999987665554
No 7
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=33.03 E-value=60 Score=32.08 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=34.3
Q ss_pred hhccCeEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 137 MVKKFKVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 137 Me~~lKIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|-..-|||+...| +-.++|-+| .+...|.. ..--.|.++++||+..|=
T Consensus 4 ~~~~~~~~i~t~G--------C~~N~~dse-~~~~~l~~-~G~~~~~~~~~aD~ivin 51 (440)
T PRK14862 4 MTAAPKIGFVSLG--------CPKALVDSE-RILTQLRA-EGYEISPSYDGADLVIVN 51 (440)
T ss_pred CCCCCEEEEEEcC--------CCCcHHHHH-HHHHHHHH-CcCEECCCcccCCEEEEe
Confidence 5556688887766 446788888 66666652 223488889999999984
No 8
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.14 E-value=58 Score=31.48 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=16.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHh
Q 045909 83 KFYKARSIRVEEDLAQARAAIRKA 106 (268)
Q Consensus 83 ~~~~s~lervE~~L~~Ara~I~~A 106 (268)
.+|...|+|.|+||.+-..+++++
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~~ 93 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALARA 93 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhc
Confidence 344566677777777777777774
No 9
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.13 E-value=69 Score=31.65 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=30.3
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|||+...| +-.++|-+| .+...|. ...--.|.++++||+..|=
T Consensus 8 ~~~i~t~G--------C~~N~~ds~-~~~~~l~-~~G~~~~~~~~~ADiiiiN 50 (448)
T PRK14333 8 SYWITTFG--------CQMNKADSE-RMAGILE-DMGYQWAEDELQADLVLYN 50 (448)
T ss_pred EEEEEEcC--------CCCcHHHHH-HHHHHHH-HCcCEECCCcccCCEEEEE
Confidence 78877766 346788888 5555554 2223488999999999874
No 10
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.81 E-value=78 Score=31.53 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=32.2
Q ss_pred hccCeEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 138 VKKFKVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 138 e~~lKIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
.+..|||+-..| +-.+.+-+| .....|.. ..--.|.++++||+..|=
T Consensus 8 ~~~~~~~i~t~G--------C~~N~~dse-~~~~~l~~-~G~~~~~~~~~ADvviiN 54 (449)
T PRK14332 8 KKLGKVYIETYG--------CQMNEYDSG-IVSSLMRD-AEYSTSNDPENSDIIFLN 54 (449)
T ss_pred cCCCEEEEEecC--------CCCCHHHHH-HHHHHHHH-CcCEECCCcccCCEEEEE
Confidence 356688877766 446778888 55555552 223478899999998874
No 11
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=29.81 E-value=44 Score=30.22 Aligned_cols=61 Identities=10% Similarity=0.185 Sum_probs=41.1
Q ss_pred EeeecceeeeeeeccccCCCCcchHHHHHHHHHHHHHHhhcCcccccCCCCceEEEccCCchhhHHHHhhhhcc
Q 045909 193 LPFSVANVVQYVYQPITTVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDWVSTYIYVLLNLLL 266 (268)
Q Consensus 193 VPfs~~~l~~~ly~p~~~~~~~~~~~L~~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHDwG~~~~~~l~~~~~ 266 (268)
+|+-.-+..+|.|... +.++....+.+.++. ..+.-|++||++.+--+|++...-+.|.|-
T Consensus 30 ~~VvGvdsl~Yfw~~r------tP~~~a~Dl~~~i~~-------y~~~w~~~~vvLiGYSFGADvlP~~~nrLp 90 (192)
T PF06057_consen 30 VPVVGVDSLRYFWSER------TPEQTAADLARIIRH-------YRARWGRKRVVLIGYSFGADVLPFIYNRLP 90 (192)
T ss_pred CeEEEechHHHHhhhC------CHHHHHHHHHHHHHH-------HHHHhCCceEEEEeecCCchhHHHHHhhCC
Confidence 3555556667777543 334555555555542 233458899999999999999998888763
No 12
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.51 E-value=69 Score=31.70 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=29.3
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|||+...| +-.++|-+| .+...|. ...+...++++||+..|=
T Consensus 5 ~~~i~tlG--------C~~N~~dse-~~~~~l~--~~G~~~~~~~~ADiiiiN 46 (446)
T PRK14337 5 TFHIITFG--------CQMNVNDSD-WLARALV--ARGFTEAPEEEARVFIVN 46 (446)
T ss_pred EEEEEeeC--------CCCcHHHHH-HHHHHHH--HCCCEECCcCCCCEEEEe
Confidence 78877766 446788888 6666665 344544556899999874
No 13
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=28.84 E-value=2.7e+02 Score=26.23 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHhhcCcccccCCCCceEEEccCCchhhHHHH
Q 045909 214 YSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDWVSTYIYV 260 (268)
Q Consensus 214 ~~~~~L~~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHDwG~~~~~~ 260 (268)
++.+...+.+.++++ ..|-+.+.+.+|+||......
T Consensus 136 ~~~~~~a~~l~~~l~-----------~l~~~~~~lvGhS~Gg~ia~~ 171 (360)
T PLN02679 136 YTMETWAELILDFLE-----------EVVQKPTVLIGNSVGSLACVI 171 (360)
T ss_pred ccHHHHHHHHHHHHH-----------HhcCCCeEEEEECHHHHHHHH
Confidence 344455556666664 235678999999999875443
No 14
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.48 E-value=81 Score=31.39 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=30.2
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|||+...| +-.++|-+| .....|.. ..--.|.++++||+..|=
T Consensus 22 ~~~i~t~G--------C~~N~~dse-~~~~~l~~-~G~~~~~~~~~AD~~iiN 64 (459)
T PRK14338 22 RYYVWTVG--------CQMNVSDSE-RLEAALQG-VGYSPAERPEDADFIVLN 64 (459)
T ss_pred EEEEEecC--------CCCCHHHHH-HHHHHHHH-CcCEECCCcccCCEEEEe
Confidence 68877665 446788888 56666652 223478999999999874
No 15
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.52 E-value=84 Score=31.22 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=30.3
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|||+-..| +-.++|-+| .+...|.. ..--.|.++++||+..|=
T Consensus 8 ~~~i~tlG--------C~~N~~dse-~~~~~l~~-~G~~~~~~~~~ADviiiN 50 (445)
T PRK14340 8 KFYIHTFG--------CQMNQADSE-IITALLQD-EGYVPAASEEDADIVLLN 50 (445)
T ss_pred EEEEEecC--------CCCcHHHHH-HHHHHHHH-CcCEECCCcccCCEEEEE
Confidence 57776655 456788888 66666652 223478899999999874
No 16
>PF13134 DUF3948: Protein of unknown function (DUF3948)
Probab=26.76 E-value=51 Score=22.11 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=17.2
Q ss_pred CCccccchhHHHHHHHHHHHH
Q 045909 1 METLGCNISLLLLQAFLLFLI 21 (268)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (268)
|.-+|+--|-.+|-||++|+.
T Consensus 12 ~D~lgsasga~~LTafI~fLa 32 (35)
T PF13134_consen 12 MDFLGSASGAAVLTAFIVFLA 32 (35)
T ss_pred hhhhhcccchHHHHHHHHHHH
Confidence 445688888999999999875
No 17
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=26.64 E-value=1e+02 Score=31.21 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=35.4
Q ss_pred eeeccccCCCCcchHHHHHHHHHHHHHHhhcCcccccCCCCceEEEccCCchhhHHHHhhhh
Q 045909 203 YVYQPITTVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDWVSTYIYVLLNL 264 (268)
Q Consensus 203 ~ly~p~~~~~~~~~~~L~~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHDwG~~~~~~l~~~ 264 (268)
|-|.-..+...++..+..+.+++-.= +.|-+.|+|-+.|||+....+++.|
T Consensus 199 ygwSd~~sk~GFn~~a~ArvmrkLMl-----------RLg~nkffiqGgDwGSiI~snlasL 249 (469)
T KOG2565|consen 199 YGWSDAPSKTGFNAAATARVMRKLML-----------RLGYNKFFIQGGDWGSIIGSNLASL 249 (469)
T ss_pred cccCcCCccCCccHHHHHHHHHHHHH-----------HhCcceeEeecCchHHHHHHHHHhh
Confidence 44543333345665555555555432 5799999999999999998888765
No 18
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=26.04 E-value=61 Score=24.27 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhcCcccccCCCCceEEEccCC
Q 045909 221 RLLTDYVTVVADKYPYWNRSNGADHFMVSCHD 252 (268)
Q Consensus 221 ~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHD 252 (268)
..+..||+ |.+..|.|||++..++
T Consensus 5 ~~L~~wl~--------~~~~lG~d~i~i~d~~ 28 (97)
T PF13704_consen 5 DYLPEWLA--------HHLALGVDHIYIYDDG 28 (97)
T ss_pred HHHHHHHH--------HHHHcCCCEEEEEECC
Confidence 45677775 4578899999998663
No 19
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.71 E-value=95 Score=30.85 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=29.4
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|||+-..| +-.++|-+| .....|.. ..--.|.+|++||+..|=
T Consensus 2 ~~~i~t~G--------C~~N~~dse-~~~~~l~~-~G~~~~~~~~~ADv~iiN 44 (455)
T PRK14335 2 TYFFETYG--------CQMNVAESA-SMEQLLLA-RGWTKAVDAETCDVLIIN 44 (455)
T ss_pred EEEEEEcC--------CCCcHHHHH-HHHHHHHH-CcCEECCCcccCCEEEEe
Confidence 56655544 456788888 56666652 233478999999999874
No 20
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.56 E-value=97 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=29.7
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|||+-..| +-.++|-+| .....|. ...--.|.++++||+..|=
T Consensus 3 ~~~i~t~G--------C~~N~~dse-~~~~~l~-~~G~~~~~~~~~AD~viiN 45 (418)
T PRK14336 3 GYYLWTIG--------CQMNQAESE-RLGRLFE-LWGYSLADKAEDAELVLVN 45 (418)
T ss_pred eEEEEecC--------CCCcHHHHH-HHHHHHH-HCcCEECCCcccCCEEEEe
Confidence 56665555 456788888 6666665 2223488899999998874
No 21
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=25.36 E-value=90 Score=29.86 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=24.9
Q ss_pred cccCCCCceEEEccCCchhhHHHHhhhhccCC
Q 045909 237 WNRSNGADHFMVSCHDWVSTYIYVLLNLLLPL 268 (268)
Q Consensus 237 WNRS~GaDHF~VscHDwG~~~~~~l~~~~~~~ 268 (268)
|...+|.|||++.+.|- ......+.+.++|.
T Consensus 318 ~~~~~G~d~f~l~~~~~-~~~~~~f~~~VlP~ 348 (355)
T TIGR03612 318 VAEVPGTGGVLLTFDDF-LEGVEDFGTRIQPL 348 (355)
T ss_pred HHhccCCCeeEEcCCCC-cchHHHHHHhcCHH
Confidence 45578999999999776 67888888888873
No 22
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=24.55 E-value=94 Score=30.46 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCCCCCchhHHHHHHHHhhcCCCc-ccCCcCCcceEEEe
Q 045909 157 GPMHNKYAIEGQFIDEMESKNNPF-RASHPDEAHAFFLP 194 (268)
Q Consensus 157 ~p~~~iYssEg~F~~eL~~~~s~f-RT~DPeeAhlFFVP 194 (268)
|+-.++|-+| .....|. ..++ .|.++++||+..|=
T Consensus 8 GC~~N~~ds~-~~~~~l~--~~G~~~~~~~~~ADviiin 43 (420)
T TIGR01578 8 GCTLNNGDSE-IMKNSLA--AYGHELVNNAEEADLAILN 43 (420)
T ss_pred CCCCcHHHHH-HHHHHHH--HCCCEECCCcccCCEEEEE
Confidence 3456888888 5555555 2344 78899999999874
No 23
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=23.80 E-value=1e+02 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCCCCCchhHHHHHHHHhhcCCCc-ccCCcCCcceEEEe
Q 045909 157 GPMHNKYAIEGQFIDEMESKNNPF-RASHPDEAHAFFLP 194 (268)
Q Consensus 157 ~p~~~iYssEg~F~~eL~~~~s~f-RT~DPeeAhlFFVP 194 (268)
|+-.++|.+| .+...|. ...+ .|.++++||+..|=
T Consensus 8 GC~~N~~ds~-~~~~~l~--~~g~~~~~~~~~aD~v~in 43 (429)
T TIGR00089 8 GCQMNEADSE-IMAGLLK--EAGYEVTDDPEEADVIIIN 43 (429)
T ss_pred CCCCcHHHHH-HHHHHHH--HCcCEECCCcccCCEEEEe
Confidence 3456888888 6666665 3345 78889999999985
No 24
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.76 E-value=1.1e+02 Score=30.09 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=29.5
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCc-ccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPF-RASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~f-RT~DPeeAhlFFVP 194 (268)
|||+...| +-.++|-+| .+...|. ..++ .|.++++||+..|=
T Consensus 2 ~~~i~t~G--------C~~N~~ds~-~~~~~l~--~~G~~~~~~~~~ADi~iiN 44 (440)
T PRK14334 2 KAHIITYG--------CQMNEYDTH-LVESELV--SLGAEIVDSVDEADFVLVN 44 (440)
T ss_pred eEEEEecC--------CCCcHHHHH-HHHHHHH--HCcCEECCCcccCCEEEEe
Confidence 56666555 446788888 6666665 2344 88899999999874
No 25
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=23.57 E-value=42 Score=26.49 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=12.0
Q ss_pred CCCCceEEEccCCchh
Q 045909 240 SNGADHFMVSCHDWVS 255 (268)
Q Consensus 240 S~GaDHF~VscHDwG~ 255 (268)
..||||++++--.=|-
T Consensus 45 ~aGRDhiiisDp~tg~ 60 (81)
T PF09671_consen 45 AAGRDHIIISDPKTGK 60 (81)
T ss_pred hcCcceEEEeCCCCCc
Confidence 6899999998654443
No 26
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=23.25 E-value=1e+02 Score=22.49 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccc
Q 045909 8 ISLLLLQAFLLFLILSLTFSSPFTEKHV 35 (268)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (268)
+|.+++-+|++|+|-.++|--=-+.+..
T Consensus 6 iG~~~~~~~I~~lIgfity~mfV~K~s~ 33 (53)
T PF13131_consen 6 IGIILFTIFIFFLIGFITYKMFVKKASP 33 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheecCCC
Confidence 6777888888898888877543333333
No 27
>PRK10673 acyl-CoA esterase; Provisional
Probab=22.32 E-value=1.4e+02 Score=25.35 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=17.7
Q ss_pred CCceEEEccCCchhhHHHHhhh
Q 045909 242 GADHFMVSCHDWVSTYIYVLLN 263 (268)
Q Consensus 242 GaDHF~VscHDwG~~~~~~l~~ 263 (268)
|.+.+.+.+|+||...+..++.
T Consensus 79 ~~~~~~lvGhS~Gg~va~~~a~ 100 (255)
T PRK10673 79 QIEKATFIGHSMGGKAVMALTA 100 (255)
T ss_pred CCCceEEEEECHHHHHHHHHHH
Confidence 6677999999999988766653
No 28
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.84 E-value=1.2e+02 Score=29.78 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=29.1
Q ss_pred eEEEecCCCCCccccCCCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEe
Q 045909 142 KVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLP 194 (268)
Q Consensus 142 KIYVY~eg~~p~~h~~p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVP 194 (268)
|||+..+| +-.++|-+| .+...|. ...--.|.++++||+..|=
T Consensus 3 ~~~~~t~G--------C~~N~~ds~-~~~~~l~-~~G~~~~~~~~~ADv~iiN 45 (439)
T PRK14328 3 KYFIETYG--------CQMNEEDSE-KLAGMLK-SMGYERTENREEADIIIFN 45 (439)
T ss_pred EEEEEEeC--------CCCCHHHHH-HHHHHHH-HCcCEECCCcCcCCEEEEe
Confidence 46766655 446788888 5555554 2223488899999999874
No 29
>TIGR02728 spore_gerQ spore coat protein GerQ. Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=21.16 E-value=50 Score=26.10 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=11.6
Q ss_pred CCCCceEEEccCCchh
Q 045909 240 SNGADHFMVSCHDWVS 255 (268)
Q Consensus 240 S~GaDHF~VscHDwG~ 255 (268)
..||||++++--.=|-
T Consensus 43 ~AGRDhiiisdp~tg~ 58 (82)
T TIGR02728 43 NAGRDHIVISDPQSGM 58 (82)
T ss_pred hcCcceEEEcCCCCCc
Confidence 6799999997544443
No 30
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=20.02 E-value=1e+02 Score=23.22 Aligned_cols=29 Identities=24% Similarity=0.629 Sum_probs=19.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCCcccccc
Q 045909 5 GCNISLLLLQAFLLFLILSLTFSSPFTEKHV 35 (268)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (268)
|.-+|+++| |-+...|.+++..|+..+..
T Consensus 34 gaL~G~~vl--FNil~~laL~yL~p~~k~~a 62 (65)
T PF08370_consen 34 GALLGFIVL--FNILFTLALTYLNPLGKSQA 62 (65)
T ss_pred HHHHHHHHH--HHHHHHHHHHhcCCcCCCCC
Confidence 444555555 34455778899999987765
Done!