BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045912
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 87/118 (73%)
Query: 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIA 81
+W++ IRR+IHENPEL +E T+ LIRSEL+ +GI Y P+ TG++ IG+G PF+A
Sbjct: 28 DWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVA 87
Query: 82 LRADMDALPLQELVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHRRKDQLNAADVI 139
LRADMDALP+QE V WEHKSKI GKMHACGHD TMLLG AK+LH + L V+
Sbjct: 88 LRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVL 145
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 114 APTTMLLGEAKLLHRRKDQL-------------NAADVISPRAEFGGTLRSLTTEGMYRL 160
A ++++L +L+ R D L NA +VI GGTLR+ T G +L
Sbjct: 223 AASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAFT--GFTQL 280
Query: 161 QKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGPE 215
Q+R+ V+ +QAAVHRCNA V+ +P ++N LY ++V + LLG E
Sbjct: 281 QQRVKEVITKQAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQE 335
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 24 LISIRRQIHENPELRFEVHNTNALIRSELDKLGI-TYSCPLVKTGIVAKI-GSGSHPFIA 81
LI+ RR +HE+PEL F+ T IR L++ I P +KTG++A+I G P IA
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 82 LRADMDALPLQELVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHRRKDQLNAAD--VI 139
+RAD+DALP+QE N SK+DG HACGHD T ++G A LL++R+ +L +
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 140 SPRAEFGGTLRSLTTEGM 157
P E R + G+
Sbjct: 154 QPAEEIAAGARKVLEAGV 171
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 11 DQILIETERDKNW-LISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIV 69
+Q LIET + K +I IRR +H++PEL F T I + + GI
Sbjct: 2 NQQLIETLKSKEGKMIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIK 61
Query: 70 AKIGSGS-HPFIALRADMDALPLQELVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHR 128
I SG +A+RAD DALP+ E S+ G MHACGHDA T +L A+ L
Sbjct: 62 VTIDSGKPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAE 121
Query: 129 RKDQLNAADVI 139
KD V+
Sbjct: 122 MKDSFTGKVVV 132
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 66 TGIVAKIGSGS-HPFIALRADMDALPLQELVNWEHKSKID-------GKMHACGHDAPTT 117
G+VA + +G P +A R D DAL L E + H+ D G HACGHD T
Sbjct: 97 AGVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTA 156
Query: 118 MLLGEAKLLHRRKDQLNA 135
+ LG A +L + QLN
Sbjct: 157 IGLGLAHVLKQYAAQLNG 174
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 12 QILIETERDKNWLISIRRQIHENPEL-RFEVHNTNALI-RSELDKLGITYSCPLVKTGIV 69
QIL E +K I I +IHE PEL E+ + LI R + I TG +
Sbjct: 6 QILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFI 65
Query: 70 AKIGSG-SHPFIALRADMDALPLQELVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHR 128
A SG P I A+ DALP G HACGH+ T + A L +
Sbjct: 66 ATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHNIIGTASVLGAIGLKQ 111
Query: 129 RKDQLNAADVI-SPRAEFGG 147
DQ+ V+ AE GG
Sbjct: 112 VIDQIGGKVVVLGCPAEEGG 131
>pdb|2FUL|A Chain A, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|B Chain B, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|C Chain C, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|D Chain D, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|E Chain E, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|F Chain F, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
Length = 177
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 8 AFADQILIETERDKNWLISIRRQI---HEN-----PELRFEVHNTNALIRSELDKLGITY 59
AF +IL+ E +KN++ I R + H++ P++ +++N + + E+ + G
Sbjct: 74 AFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKS 133
Query: 60 SCPLVKTGIVAKIGSGSHPFIA 81
S V + K+ + PFI
Sbjct: 134 SKKFVPKEVSKKVRRAAKPFIT 155
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 32 HENPELRFEVH-NTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALP 90
HE EL E+H + IR+ +D LG K+G G+H R + P
Sbjct: 176 HEGNELELEIHCSKGTYIRTIIDDLG-------------EKLGCGAHVIYLRRLAVSKYP 222
Query: 91 LQELVNWEH 99
++ +V EH
Sbjct: 223 VERMVTLEH 231
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 32 HENPELRFEVH-NTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALP 90
HE EL E+H + IR+ +D LG K+G G+H R + P
Sbjct: 163 HEGNELELEIHCSKGTYIRTIIDDLG-------------EKLGCGAHVIYLRRLAVSKYP 209
Query: 91 LQELVNWEH 99
++ +V EH
Sbjct: 210 VERMVTLEH 218
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 32 HENPELRFEVH-NTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALP 90
HE EL E+H + IR+ +D LG K+G G+H R + P
Sbjct: 176 HEGNELELEIHCSKGTYIRTIIDDLG-------------EKLGCGAHVIYLRRLAVSKYP 222
Query: 91 LQELVNWEH 99
++ +V EH
Sbjct: 223 VERMVTLEH 231
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 56 GITYSCPLVKTGIVAKIGSGSH-PFIALRADMDAL---------PLQELVNWEHKSKIDG 105
G Y + K G+V ++G + P A ++ P+ E + EH K
Sbjct: 633 GRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSD 692
Query: 106 KMHACGHDAPTTMLLGEAKLLH--RRKDQLNAADV 138
+ DAP +G K +H ++K ++N AD+
Sbjct: 693 YIKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADI 727
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 56 GITYSCPLVKTGIVAKIGSGSH-PFIALRADMDAL---------PLQELVNWEHKSKIDG 105
G Y + K G+V ++G + P A ++ P+ E + EH K
Sbjct: 194 GRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSD 253
Query: 106 KMHACGHDAPTTMLLGEAKLLH--RRKDQLNAADV 138
+ DAP +G K +H ++K ++N AD+
Sbjct: 254 YIKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADI 288
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 56 GITYSCPLVKTGIVAKIGSGSH-PFIALRADMDAL---------PLQELVNWEHKSKIDG 105
G Y + K G+V ++G + P A ++ P+ E + EH K
Sbjct: 275 GRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSD 334
Query: 106 KMHACGHDAPTTMLLGEAKLLH--RRKDQLNAADV 138
+ DAP +G K +H ++K ++N AD+
Sbjct: 335 YIKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADI 369
>pdb|2WGY|A Chain A, Crystal Structure Of The G243a Mutant Of Cyp130 From M.
Tuberculosis
Length = 413
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 107 MHACGHDAPTTMLLGEAKLLHRRKDQ 132
M G+D T ML G LLHRR DQ
Sbjct: 246 MVTAGNDTVTGMLGGSMPLLHRRPDQ 271
>pdb|2WH8|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|B Chain B, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|C Chain C, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|D Chain D, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WHF|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
Length = 413
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 107 MHACGHDAPTTMLLGEAKLLHRRKDQ 132
M G+D T ML G LLHRR DQ
Sbjct: 246 MVTGGNDTVTGMLGGSMPLLHRRPDQ 271
>pdb|2UUQ|A Chain A, Crystal Structure Of Cyp130 From Mycobacterium
Tuberculosis In The Ligand-Free Form
pdb|2UVN|A Chain A, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
pdb|2UVN|B Chain B, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
Length = 414
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 107 MHACGHDAPTTMLLGEAKLLHRRKDQ 132
M G+D T ML G LLHRR DQ
Sbjct: 247 MVTGGNDTVTGMLGGSMPLLHRRPDQ 272
>pdb|3BQI|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x From A
Var2csa Encoded Pfemp1 Protein
pdb|3BQK|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x From A
Var2csa Encoded Pfemp1 Protein In Complex With Sulphate
pdb|3BQL|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x Domain
From A Var2csa Encoded Pfemp1 Protein
Length = 360
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 27 IRRQIHENPELRFEVHNTNALIRSELDKLG 56
I+ IH+ EL +E H+T I S+ DK G
Sbjct: 83 IKNAIHKETELLYEYHDTGTAIISKNDKKG 112
>pdb|3CML|A Chain A, Crystal Structure Of The Dbl3x Domain Of The Plasmodium
Falcipurum Var2csa Protein
pdb|3CPZ|A Chain A, Crystal Structure Of Var2csa Dbl3x Domain In The Presence
Of Dodecasaccharide Of Csa
Length = 362
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 27 IRRQIHENPELRFEVHNTNALIRSELDKLG 56
I+ IH+ EL +E H+T I S+ DK G
Sbjct: 82 IKNAIHKETELLYEYHDTGTAIISKNDKKG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,312,710
Number of Sequences: 62578
Number of extensions: 246508
Number of successful extensions: 516
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 18
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)