Query 045912
Match_columns 218
No_of_seqs 293 out of 1512
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1473 AbgB Metal-dependent a 100.0 3.9E-46 8.5E-51 314.3 24.5 200 12-216 3-321 (392)
2 PLN02693 IAA-amino acid hydrol 100.0 6.8E-39 1.5E-43 277.0 26.0 203 13-217 36-356 (437)
3 PLN02280 IAA-amino acid hydrol 100.0 3.5E-37 7.6E-42 268.2 26.0 202 14-215 89-406 (478)
4 PRK06915 acetylornithine deace 100.0 1.9E-32 4.1E-37 236.6 23.7 209 7-216 2-358 (422)
5 TIGR01891 amidohydrolases amid 100.0 4.9E-32 1.1E-36 229.8 23.1 186 25-214 2-305 (363)
6 PRK08588 succinyl-diaminopimel 100.0 2.3E-30 5E-35 220.6 21.0 189 22-215 2-314 (377)
7 PRK13013 succinyl-diaminopimel 100.0 1.4E-29 3.1E-34 219.0 23.5 200 12-215 4-360 (427)
8 PRK06837 acetylornithine deace 100.0 4.2E-29 9.1E-34 216.1 23.5 208 5-215 3-362 (427)
9 TIGR03526 selenium_YgeY putati 100.0 2E-28 4.2E-33 210.0 22.3 200 11-215 2-333 (395)
10 TIGR03320 ygeY M20/DapE family 100.0 3.1E-28 6.7E-33 208.7 21.9 200 11-216 2-334 (395)
11 PRK07522 acetylornithine deace 100.0 2E-28 4.3E-33 209.2 19.6 184 22-209 4-323 (385)
12 PRK13004 peptidase; Reviewed 100.0 5.4E-28 1.2E-32 207.5 22.1 203 10-215 3-335 (399)
13 PRK06133 glutamate carboxypept 100.0 5.8E-28 1.3E-32 207.9 22.3 194 11-210 26-340 (410)
14 PRK07338 hypothetical protein; 100.0 1E-27 2.2E-32 205.9 22.2 198 9-214 4-337 (402)
15 PRK13009 succinyl-diaminopimel 100.0 1.9E-27 4E-32 202.5 21.7 184 23-215 3-315 (375)
16 PRK05111 acetylornithine deace 100.0 1.2E-27 2.6E-32 204.2 20.6 183 22-208 5-320 (383)
17 TIGR01246 dapE_proteo succinyl 100.0 1.4E-27 3E-32 203.1 20.4 182 25-215 2-312 (370)
18 PRK13983 diaminopimelate amino 100.0 1.4E-27 3E-32 204.8 20.5 193 19-215 2-342 (400)
19 TIGR01910 DapE-ArgE acetylorni 100.0 5.5E-28 1.2E-32 205.8 16.7 186 26-215 2-324 (375)
20 PRK08596 acetylornithine deace 100.0 1E-26 2.2E-31 200.9 23.0 204 12-215 3-356 (421)
21 PRK08651 succinyl-diaminopimel 100.0 5.9E-27 1.3E-31 200.7 20.4 194 18-216 2-332 (394)
22 TIGR01892 AcOrn-deacetyl acety 100.0 9E-27 1.9E-31 197.4 18.8 179 26-208 1-307 (364)
23 TIGR01883 PepT-like peptidase 99.9 3.9E-26 8.4E-31 193.5 21.7 182 24-214 2-304 (361)
24 TIGR01880 Ac-peptdase-euk N-ac 99.9 4.5E-26 9.6E-31 195.7 20.0 185 21-211 8-333 (400)
25 PRK07907 hypothetical protein; 99.9 1.1E-25 2.4E-30 195.9 22.2 200 10-215 6-383 (449)
26 PRK08201 hypothetical protein; 99.9 1.2E-25 2.6E-30 196.0 21.0 121 9-129 1-138 (456)
27 PRK13007 succinyl-diaminopimel 99.9 2.8E-25 6.1E-30 187.6 18.2 175 20-208 5-294 (352)
28 PRK08652 acetylornithine deace 99.9 6E-25 1.3E-29 185.2 19.7 176 22-215 2-285 (347)
29 PRK09104 hypothetical protein; 99.9 3E-24 6.4E-29 187.7 22.6 121 10-130 5-147 (464)
30 TIGR01900 dapE-gram_pos succin 99.9 8.7E-25 1.9E-29 186.1 18.5 101 27-127 1-119 (373)
31 PRK07473 carboxypeptidase; Pro 99.9 6E-24 1.3E-28 181.1 21.2 186 20-214 9-315 (376)
32 COG0624 ArgE Acetylornithine d 99.9 9E-24 1.9E-28 181.9 21.9 201 13-215 4-347 (409)
33 PRK06446 hypothetical protein; 99.9 8.8E-24 1.9E-28 183.4 21.0 107 22-128 2-120 (436)
34 TIGR01882 peptidase-T peptidas 99.9 9.6E-24 2.1E-28 181.8 21.0 189 22-215 3-348 (410)
35 PRK09133 hypothetical protein; 99.9 1.4E-23 3E-28 183.8 21.2 112 19-130 34-160 (472)
36 PRK05469 peptidase T; Provisio 99.9 1.9E-23 4.1E-28 179.9 19.7 187 22-214 2-345 (408)
37 PRK08262 hypothetical protein; 99.9 8.3E-24 1.8E-28 185.8 15.9 112 19-130 41-173 (486)
38 PRK07079 hypothetical protein; 99.9 8.1E-23 1.7E-27 178.9 21.4 116 11-128 8-144 (469)
39 PRK07205 hypothetical protein; 99.9 3.5E-22 7.5E-27 173.8 20.6 110 18-128 7-133 (444)
40 PRK07906 hypothetical protein; 99.9 1.7E-22 3.6E-27 174.9 18.5 106 25-130 2-124 (426)
41 PRK00466 acetyl-lysine deacety 99.9 2.6E-22 5.6E-27 169.3 19.2 173 19-215 7-283 (346)
42 PRK13381 peptidase T; Provisio 99.9 4.6E-22 1E-26 171.1 20.9 189 23-214 2-343 (404)
43 PRK04443 acetyl-lysine deacety 99.9 3.6E-22 7.9E-27 168.6 19.2 174 21-214 5-288 (348)
44 TIGR01893 aa-his-dipept aminoa 99.9 6.7E-22 1.5E-26 173.4 19.4 185 21-211 3-321 (477)
45 PRK12892 allantoate amidohydro 99.9 2.2E-21 4.8E-26 167.2 20.9 189 21-215 9-350 (412)
46 TIGR01902 dapE-lys-deAc N-acet 99.9 1.2E-21 2.5E-26 164.7 16.6 165 26-211 1-270 (336)
47 PRK07318 dipeptidase PepV; Rev 99.9 7E-21 1.5E-25 166.5 21.2 116 12-130 4-137 (466)
48 PRK12893 allantoate amidohydro 99.9 1.6E-20 3.4E-25 161.9 21.3 189 21-215 9-349 (412)
49 PRK08737 acetylornithine deace 99.9 8.3E-21 1.8E-25 161.1 18.7 101 20-125 4-116 (364)
50 PRK09290 allantoate amidohydro 99.9 3.3E-20 7.2E-25 160.0 21.2 189 21-215 6-350 (413)
51 PRK12891 allantoate amidohydro 99.9 5.4E-20 1.2E-24 158.7 21.9 76 135-215 274-349 (414)
52 PRK08554 peptidase; Reviewed 99.9 3.2E-20 6.8E-25 161.0 18.6 106 23-129 2-121 (438)
53 PRK12890 allantoate amidohydro 99.9 1.1E-19 2.5E-24 156.7 21.9 76 135-215 276-351 (414)
54 TIGR01886 dipeptidase dipeptid 99.9 1.5E-19 3.3E-24 158.0 21.2 115 13-130 4-136 (466)
55 PRK06156 hypothetical protein; 99.8 3.5E-19 7.7E-24 157.6 20.9 111 17-130 41-173 (520)
56 PRK13590 putative bifunctional 99.8 2E-18 4.4E-23 154.6 22.1 76 135-215 451-526 (591)
57 TIGR01879 hydantase amidase, h 99.8 1E-18 2.3E-23 150.1 19.2 76 135-215 267-342 (401)
58 PRK13799 unknown domain/N-carb 99.8 3.1E-18 6.8E-23 153.3 22.1 76 135-215 453-528 (591)
59 TIGR03176 AllC allantoate amid 99.8 1E-17 2.2E-22 144.2 21.8 75 135-213 268-342 (406)
60 PRK15026 aminoacyl-histidine d 99.8 8.5E-18 1.8E-22 147.2 19.9 102 21-123 9-127 (485)
61 KOG2276 Metalloexopeptidases [ 99.7 2.1E-15 4.5E-20 124.8 17.5 124 11-134 5-155 (473)
62 KOG2275 Aminoacylase ACY1 and 99.7 9.8E-15 2.1E-19 121.5 18.2 112 21-132 24-150 (420)
63 TIGR01887 dipeptidaselike dipe 99.6 4.4E-15 9.5E-20 129.2 12.6 106 22-131 2-126 (447)
64 PRK10199 alkaline phosphatase 99.2 4.4E-10 9.6E-15 93.7 11.8 98 30-130 43-162 (346)
65 COG2195 PepD Di- and tripeptid 99.1 2.3E-09 5E-14 91.6 12.4 189 21-214 4-352 (414)
66 TIGR03106 trio_M42_hydro hydro 99.1 9E-10 2E-14 92.6 9.5 69 22-91 3-72 (343)
67 PRK09961 exoaminopeptidase; Pr 99.1 6.7E-10 1.4E-14 93.6 8.6 66 25-91 3-68 (344)
68 TIGR03107 glu_aminopep glutamy 98.9 9.5E-09 2.1E-13 86.6 8.2 64 26-90 2-67 (350)
69 COG1363 FrvX Cellulase M and r 98.8 2.3E-08 5E-13 83.7 8.6 68 22-90 2-70 (355)
70 PRK09864 putative peptidase; P 98.8 3.6E-08 7.9E-13 83.1 8.5 64 25-90 3-66 (356)
71 PF01546 Peptidase_M20: Peptid 98.7 2.5E-08 5.5E-13 76.6 5.8 50 81-130 1-55 (189)
72 COG4187 RocB Arginine degradat 98.2 5.8E-06 1.3E-10 70.2 8.4 109 21-129 7-158 (553)
73 PF07687 M20_dimer: Peptidase 98.0 2E-05 4.3E-10 55.2 5.6 40 135-174 71-110 (111)
74 KOG2194 Aminopeptidases of the 97.0 0.0052 1.1E-07 56.8 9.4 96 23-133 58-185 (834)
75 TIGR01893 aa-his-dipept aminoa 95.7 0.054 1.2E-06 47.9 8.2 69 138-216 347-417 (477)
76 PRK15026 aminoacyl-histidine d 95.5 0.085 1.8E-06 46.9 8.6 67 140-216 355-423 (485)
77 KOG3946 Glutaminyl cyclase [Po 95.0 0.23 5.1E-06 40.4 8.6 80 39-129 69-159 (338)
78 cd00433 Peptidase_M17 Cytosol 94.4 0.93 2E-05 40.1 11.9 185 21-215 153-386 (468)
79 PRK05015 aminopeptidase B; Pro 93.7 2.3 5E-05 36.9 12.6 194 6-214 89-336 (424)
80 TIGR01887 dipeptidaselike dipe 93.4 0.3 6.5E-06 42.9 7.1 65 140-215 326-392 (447)
81 PTZ00412 leucyl aminopeptidase 93.4 1 2.2E-05 40.3 10.2 189 22-215 212-450 (569)
82 PF04389 Peptidase_M28: Peptid 93.1 0.24 5.2E-06 37.5 5.3 43 79-130 2-45 (179)
83 PRK00913 multifunctional amino 92.8 1.5 3.2E-05 39.0 10.3 184 22-215 171-400 (483)
84 PF05343 Peptidase_M42: M42 gl 91.2 0.24 5.1E-06 41.0 3.5 25 66-90 1-26 (292)
85 KOG2526 Predicted aminopeptida 86.3 6.7 0.00014 34.2 8.8 70 48-130 167-256 (555)
86 KOG2597 Predicted aminopeptida 86.0 8.6 0.00019 34.2 9.5 188 22-214 189-421 (513)
87 COG0260 PepB Leucyl aminopepti 82.8 18 0.00039 32.3 10.2 184 22-214 167-398 (485)
88 PF00883 Peptidase_M17: Cytoso 75.7 47 0.001 27.9 14.7 174 25-214 1-230 (311)
89 PF05450 Nicastrin: Nicastrin; 71.0 8.3 0.00018 30.9 4.5 39 78-129 1-42 (234)
90 PRK13506 formate--tetrahydrofo 69.0 41 0.00088 30.6 8.6 73 135-214 331-424 (578)
91 PF02909 TetR_C: Tetracyclin r 67.9 15 0.00032 26.2 5.0 56 5-60 4-62 (139)
92 TIGR03106 trio_M42_hydro hydro 62.3 11 0.00024 32.0 3.8 28 103-130 173-202 (343)
93 PF10070 DUF2309: Uncharacteri 57.3 1.1E+02 0.0024 29.2 9.8 45 37-102 475-520 (788)
94 PF11176 DUF2962: Protein of u 56.4 31 0.00067 25.7 4.9 57 2-59 65-123 (155)
95 COG4635 HemG Flavodoxin [Energ 56.0 7.2 0.00016 29.3 1.4 33 30-62 3-35 (175)
96 PF03755 YicC_N: YicC-like fam 53.5 91 0.002 23.2 8.2 67 142-210 16-93 (159)
97 COG2234 Iap Predicted aminopep 48.5 35 0.00076 29.6 4.8 17 114-130 231-247 (435)
98 COG3002 Uncharacterized protei 47.7 89 0.0019 29.0 7.1 44 38-102 538-582 (880)
99 cd07963 Anticodon_Ia_Cys Antic 46.2 59 0.0013 23.9 5.2 34 23-61 114-147 (156)
100 cd04247 AAK_AK-Hom3 AAK_AK-Hom 45.3 84 0.0018 26.3 6.4 24 38-61 130-153 (306)
101 PF03682 UPF0158: Uncharacteri 43.4 33 0.00073 25.8 3.4 54 6-60 84-142 (163)
102 PF01221 Dynein_light: Dynein 43.0 71 0.0015 21.1 4.7 31 22-55 19-49 (89)
103 PF12307 DUF3631: Protein of u 42.2 28 0.0006 26.8 2.8 36 24-59 119-159 (184)
104 PRK02813 putative aminopeptida 42.1 1.3E+02 0.0028 26.5 7.3 53 38-90 18-89 (428)
105 PF13412 HTH_24: Winged helix- 41.7 53 0.0011 18.6 3.5 33 25-57 6-46 (48)
106 KOG2195 Transferrin receptor a 39.9 61 0.0013 30.4 5.1 49 66-130 339-389 (702)
107 PF12685 SpoIIIAH: SpoIIIAH-li 39.4 1.8E+02 0.0038 22.5 7.0 48 11-58 89-150 (196)
108 PF01316 Arg_repressor: Argini 37.5 57 0.0012 20.8 3.3 15 45-59 22-36 (70)
109 cd04870 ACT_PSP_1 CT domains f 37.0 1.1E+02 0.0023 19.2 6.4 65 111-182 6-74 (75)
110 cd00477 FTHFS Formyltetrahydro 36.1 2.1E+02 0.0045 25.9 7.5 69 135-210 301-383 (524)
111 PRK02256 putative aminopeptida 33.5 3.2E+02 0.007 24.3 8.4 55 36-90 36-106 (462)
112 COG5482 Uncharacterized conser 33.5 88 0.0019 24.0 4.2 43 42-86 4-46 (229)
113 PRK05406 LamB/YcsF family prot 32.8 2.2E+02 0.0047 23.1 6.6 99 108-211 34-136 (246)
114 cd05391 RasGAP_p120GAP p120GAP 32.6 83 0.0018 26.4 4.4 35 3-37 226-260 (315)
115 cd04257 AAK_AK-HSDH AAK_AK-HSD 32.4 2.2E+02 0.0049 23.5 6.9 29 38-66 122-150 (294)
116 cd06406 PB1_P67 A PB1 domain i 32.3 1E+02 0.0022 20.2 3.9 59 142-205 8-66 (80)
117 PRK05066 arginine repressor; P 31.7 62 0.0013 24.2 3.2 35 21-60 7-42 (156)
118 cd08071 MPN_DUF2466 Mov34/MPN/ 31.0 45 0.00097 23.3 2.3 30 31-60 66-99 (113)
119 PRK06291 aspartate kinase; Pro 30.8 1.8E+02 0.0039 25.8 6.5 24 38-61 127-150 (465)
120 PRK12569 hypothetical protein; 30.6 2.9E+02 0.0063 22.3 7.1 99 108-211 37-139 (245)
121 TIGR02159 PA_CoA_Oxy4 phenylac 30.2 2.1E+02 0.0045 21.1 5.7 34 137-170 21-54 (146)
122 PF07577 DUF1547: Domain of Un 29.9 8.3 0.00018 23.6 -1.4 12 82-93 6-17 (58)
123 PF07351 DUF1480: Protein of u 29.8 39 0.00084 21.9 1.6 23 65-89 49-71 (80)
124 COG4004 Uncharacterized protei 29.7 84 0.0018 21.2 3.2 30 44-75 13-42 (96)
125 PRK13505 formate--tetrahydrofo 29.4 4.5E+02 0.0097 24.1 8.9 69 135-210 318-399 (557)
126 COG1698 Uncharacterized protei 29.3 1.8E+02 0.0039 19.5 4.8 47 13-59 7-53 (93)
127 PTZ00371 aspartyl aminopeptida 28.7 3.5E+02 0.0076 24.1 7.9 53 38-90 19-91 (465)
128 PF09518 RE_HindIII: HindIII r 28.6 3.1E+02 0.0067 22.9 6.9 58 3-60 19-86 (311)
129 PRK02797 4-alpha-L-fucosyltran 28.0 2E+02 0.0043 24.3 5.8 37 174-216 171-207 (322)
130 COG0055 AtpD F0F1-type ATP syn 28.0 44 0.00096 28.9 2.1 57 35-91 386-446 (468)
131 PF01268 FTHFS: Formate--tetra 27.5 1E+02 0.0023 28.0 4.4 69 135-210 317-398 (557)
132 cd05133 RasGAP_IQGAP1 IQGAP1 i 27.3 89 0.0019 26.8 3.8 36 2-37 228-263 (360)
133 PRK04280 arginine repressor; P 27.2 83 0.0018 23.2 3.2 31 26-61 7-37 (148)
134 COG1540 Uncharacterized protei 27.0 3.4E+02 0.0073 21.9 7.7 98 108-210 34-135 (252)
135 smart00733 Mterf Mitochondrial 26.8 87 0.0019 15.0 3.0 28 30-58 3-31 (31)
136 KOG0340 ATP-dependent RNA heli 26.6 26 0.00056 30.0 0.4 59 38-100 8-75 (442)
137 KOG2965 Arginase [Amino acid t 26.5 2.9E+02 0.0063 22.8 6.3 102 42-159 89-197 (318)
138 cd05395 RasGAP_RASA4 Ras GTPas 26.0 97 0.0021 26.3 3.8 34 5-38 254-287 (337)
139 TIGR02678 conserved hypothetic 26.0 3.3E+02 0.0072 23.5 7.0 54 1-58 297-351 (375)
140 PTZ00059 dynein light chain; P 25.9 1.9E+02 0.0042 19.2 4.6 16 40-55 35-50 (90)
141 PRK00260 cysS cysteinyl-tRNA s 25.9 2E+02 0.0043 25.5 5.9 36 21-61 418-453 (463)
142 PF12464 Mac: Maltose acetyltr 25.8 1E+02 0.0023 18.0 3.0 38 17-56 17-54 (55)
143 cd05136 RasGAP_DAB2IP The DAB2 25.8 1.3E+02 0.0029 25.1 4.5 37 2-38 224-260 (309)
144 cd04871 ACT_PSP_2 ACT domains 25.7 2E+02 0.0042 18.7 6.2 38 139-181 45-82 (84)
145 COG1979 Uncharacterized oxidor 25.6 2.3E+02 0.0051 24.2 5.8 45 17-61 294-340 (384)
146 PF09650 PHA_gran_rgn: Putativ 25.6 1.7E+02 0.0037 19.4 4.2 33 149-181 3-35 (87)
147 COG0215 CysS Cysteinyl-tRNA sy 25.1 2E+02 0.0044 25.6 5.6 38 19-61 417-454 (464)
148 cd06882 PX_p40phox The phospho 25.0 93 0.002 22.1 3.0 37 14-55 81-118 (123)
149 PF13224 DUF4032: Domain of un 24.9 1.3E+02 0.0027 22.8 3.8 36 26-61 2-37 (165)
150 smart00853 MutL_C MutL C termi 24.7 1.2E+02 0.0026 21.4 3.7 26 37-62 61-86 (136)
151 COG2759 MIS1 Formyltetrahydrof 24.7 5.2E+02 0.011 23.3 10.7 73 135-215 315-400 (554)
152 PF11757 RSS_P20: Suppressor o 24.7 2.3E+02 0.005 20.6 4.9 46 10-55 48-94 (137)
153 cd05137 RasGAP_CLA2_BUD2 CLA2/ 24.2 1.3E+02 0.0029 26.2 4.3 33 3-35 300-332 (395)
154 PF08676 MutL_C: MutL C termin 23.9 96 0.0021 22.2 3.1 25 37-61 60-84 (144)
155 cd04244 AAK_AK-LysC-like AAK_A 23.9 2.9E+02 0.0063 22.9 6.2 24 38-61 123-146 (298)
156 PF10195 Phospho_p8: DNA-bindi 23.7 99 0.0022 19.1 2.5 21 30-50 34-55 (60)
157 PF14133 DUF4300: Domain of un 23.7 4E+02 0.0087 21.6 8.2 64 24-89 128-192 (250)
158 cd06872 PX_SNX19_like_plant Th 23.4 1.3E+02 0.0028 20.7 3.5 27 14-40 71-97 (107)
159 cd05131 RasGAP_IQGAP2 IQGAP2 i 23.2 1.4E+02 0.0031 25.3 4.3 36 2-37 228-263 (339)
160 PF09413 DUF2007: Domain of un 23.1 1.3E+02 0.0029 18.3 3.2 19 43-61 10-28 (67)
161 TIGR01753 flav_short flavodoxi 23.0 1.1E+02 0.0024 21.5 3.2 26 36-61 7-32 (140)
162 COG1438 ArgR Arginine represso 23.0 1.1E+02 0.0025 22.7 3.2 30 135-166 119-148 (150)
163 PTZ00386 formyl tetrahydrofola 23.0 4.2E+02 0.009 24.6 7.2 68 135-209 383-463 (625)
164 PF04002 RadC: RadC-like JAB d 22.6 43 0.00092 23.8 0.9 29 32-60 72-104 (123)
165 PRK14536 cysS cysteinyl-tRNA s 22.6 2.1E+02 0.0045 25.7 5.4 22 40-61 459-480 (490)
166 PF03738 GSP_synth: Glutathion 22.6 83 0.0018 21.1 2.3 24 38-61 10-33 (97)
167 PF08002 DUF1697: Protein of u 22.5 1.7E+02 0.0036 21.2 4.0 35 37-71 13-48 (137)
168 PRK13507 formate--tetrahydrofo 22.5 4.9E+02 0.011 23.9 7.5 69 135-210 339-428 (587)
169 PRK09271 flavodoxin; Provision 22.3 1.1E+02 0.0024 22.6 3.1 26 35-60 8-33 (160)
170 PF00258 Flavodoxin_1: Flavodo 22.2 1.1E+02 0.0023 21.8 3.0 26 36-61 5-30 (143)
171 PRK14343 lipoate-protein ligas 22.2 3.5E+02 0.0075 21.8 6.0 26 46-71 117-142 (235)
172 PF11313 DUF3116: Protein of u 21.5 2.6E+02 0.0056 18.6 5.0 56 5-60 4-59 (85)
173 COG0353 RecR Recombinational D 21.4 99 0.0022 24.0 2.7 20 42-61 150-169 (198)
174 PF15643 Tox-PL-2: Papain fold 21.4 1.8E+02 0.0039 20.0 3.6 22 38-59 18-39 (100)
175 TIGR03424 urea_degr_1 urea car 21.4 2.4E+02 0.0052 21.9 4.9 49 43-91 113-174 (198)
176 KOG0464 Elongation factor G [T 21.3 4.3E+02 0.0094 23.5 6.7 32 78-112 38-69 (753)
177 COG2443 Sss1 Preprotein transl 21.2 1.8E+02 0.0039 18.3 3.4 36 15-50 6-41 (65)
178 PF11521 TFIIE-A_C-term: C-ter 21.2 52 0.0011 21.9 1.0 32 2-33 49-82 (86)
179 PF05920 Homeobox_KN: Homeobox 21.0 1E+02 0.0022 17.1 2.1 14 2-16 9-22 (40)
180 PRK09084 aspartate kinase III; 21.0 2.7E+02 0.0058 24.6 5.7 24 38-61 114-137 (448)
181 PLN02946 cysteine-tRNA ligase 20.9 2.9E+02 0.0062 25.4 5.9 22 40-61 514-535 (557)
182 PF12122 DUF3582: Protein of u 20.9 1.9E+02 0.0041 19.8 3.8 23 40-62 8-30 (101)
183 cd05132 RasGAP_GAPA GAPA is an 20.9 1.6E+02 0.0036 24.8 4.2 35 3-37 224-258 (331)
184 PF14000 Packaging_FI: DNA pac 20.9 2.5E+02 0.0053 20.2 4.4 39 18-56 3-41 (125)
185 cd04243 AAK_AK-HSDH-like AAK_A 20.5 4.4E+02 0.0095 21.8 6.6 26 38-63 121-146 (293)
186 smart00596 PRE_C2HC PRE_C2HC d 20.5 69 0.0015 20.4 1.4 15 46-60 2-16 (69)
187 KOG0188 Alanyl-tRNA synthetase 20.4 6.8E+02 0.015 24.0 8.1 125 44-170 472-628 (895)
188 TIGR00702 uncharacterized doma 20.4 5.6E+02 0.012 22.0 7.4 19 43-61 202-220 (377)
189 PHA02117 glutathionylspermidin 20.3 2.4E+02 0.0052 24.6 5.1 23 39-61 187-209 (397)
No 1
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=3.9e-46 Score=314.28 Aligned_cols=200 Identities=41% Similarity=0.549 Sum_probs=182.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCC-CceEEEEecCC-CCcEEEEEeeCCCC
Q 045912 12 QILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLV-KTGIVAKIGSG-SHPFIALRADMDAL 89 (218)
Q Consensus 12 ~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~-~~~via~~~~~-~~~~i~~~~h~D~v 89 (218)
++.+++ ...+++++++|+||++||++++|++|++||+++|+++||++....+ +|+|+|+|+++ +||+|+||++||+|
T Consensus 3 ~~~~~~-~~~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~DAL 81 (392)
T COG1473 3 KILDEI-ELKDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMDAL 81 (392)
T ss_pred hHHHHH-hhhHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeecccC
Confidence 355556 8889999999999999999999999999999999999999444333 79999999765 46799999999999
Q ss_pred CccccCCCCccccCCCcccccCCcHHHHHHHHHHHHHHhhcccCC-----------------------------------
Q 045912 90 PLQELVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHRRKDQLN----------------------------------- 134 (218)
Q Consensus 90 p~~~~~~~pf~~~~~g~~~~~G~d~~~a~ll~aa~~L~~~~~~~~----------------------------------- 134 (218)
|+.|.++.||+|+.+|+||+||||+|+|++|++|++|++....++
T Consensus 82 Pi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v~g 161 (392)
T COG1473 82 PIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAVFG 161 (392)
T ss_pred ccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEEEE
Confidence 999999999999999999999999999999999999998754433
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 162 ~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~vg~~~a 241 (392)
T COG1473 162 LHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTVGKIEA 241 (392)
T ss_pred ecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEEEEecC
Confidence
Q ss_pred --CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhc
Q 045912 135 --AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLL 212 (218)
Q Consensus 135 --~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~ 212 (218)
+.|||||++++.+++|+++.+..+.+.++|+++++++|..+|+++++++ ...+|++.||+.+++.+++++++..
T Consensus 242 G~a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~~----~~~~p~~~Nd~~~~~~~~~~~~~~~ 317 (392)
T COG1473 242 GTAANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEIDY----ERGYPPVVNDPALTDLLAEAAEEVG 317 (392)
T ss_pred CCcCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe----cCCCCCccCCHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999999 8899999999999999999999988
Q ss_pred CCCC
Q 045912 213 GPEN 216 (218)
Q Consensus 213 G~~~ 216 (218)
|++.
T Consensus 318 ~~~~ 321 (392)
T COG1473 318 GEEV 321 (392)
T ss_pred cccc
Confidence 7654
No 2
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=6.8e-39 Score=276.96 Aligned_cols=203 Identities=50% Similarity=0.833 Sum_probs=171.3
Q ss_pred HHHHHHH--hHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCC
Q 045912 13 ILIETER--DKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALP 90 (218)
Q Consensus 13 i~~~i~~--~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp 90 (218)
++...++ ..+++++++++||++||+|++|.+|++||.++|+++||+++...+++||+|+++++++|+|+|+|||||||
T Consensus 36 ~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g~~~g~~i~l~~h~DaVp 115 (437)
T PLN02693 36 LLELAKSPEVFDWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGTGEPPFVALRADMDALP 115 (437)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEECCCCCCEEEEEeecCCCc
Confidence 4444443 55789999999999999999999999999999999999976544679999999655569999999999999
Q ss_pred ccccCCCCccccCCCcccccCCcHHHHHHHHHHHHHHhhcccCC------------------------------------
Q 045912 91 LQELVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHRRKDQLN------------------------------------ 134 (218)
Q Consensus 91 ~~~~~~~pf~~~~~g~~~~~G~d~~~a~ll~aa~~L~~~~~~~~------------------------------------ 134 (218)
+++.++++|.+..+|++||||||+|+|++++|++.|++.+..+.
T Consensus 116 ~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~~Ga~~~i~~g~~~~~~~iig~h 195 (437)
T PLN02693 116 IQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIH 195 (437)
T ss_pred CCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccchhhHHHHHHCCCCCCCCEEEEEe
Confidence 98777788888788999999999999999999999987643222
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 196 ~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~~~~ti~vg~i~GG~ 275 (437)
T PLN02693 196 LSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGN 275 (437)
T ss_pred cCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCCCCcEEEEEEEEcCC
Confidence
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.|+||++|++.+|+|+.+.+ +.+.++|+++++.++..+++++++++.......++++.+|+++++.+++++++++|.
T Consensus 276 ~~NvVPd~a~~~~diR~~~~~--~~i~~~i~~i~~~~a~~~g~~~e~~~~~~~~~~~~~~~nd~~l~~~~~~~~~~~~G~ 353 (437)
T PLN02693 276 AFNVIPDSITIGGTLRAFTGF--TQLQQRIKEIITKQAAVHRCNASVNLTPNGREPMPPTVNNMDLYKQFKKVVRDLLGQ 353 (437)
T ss_pred CCceECCeEEEEEEEecCCHH--HHHHHHHHHHHHHHHHHhCCcEEEEEeecCccCCCCccCCHHHHHHHHHHHHHhcCC
Confidence 679999999999999999974 689999999999988888888887762100134677889999999999999998887
Q ss_pred CCC
Q 045912 215 ENV 217 (218)
Q Consensus 215 ~~~ 217 (218)
+.+
T Consensus 354 ~~~ 356 (437)
T PLN02693 354 EAF 356 (437)
T ss_pred cce
Confidence 643
No 3
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=3.5e-37 Score=268.20 Aligned_cols=202 Identities=51% Similarity=0.874 Sum_probs=174.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCccc
Q 045912 14 LIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQE 93 (218)
Q Consensus 14 ~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~ 93 (218)
.....+..+.+.+++|.||++||++++|.++++||.++|+++||++++..+++||+|+++++++|+|+|+|||||||+++
T Consensus 89 ~~~~~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e 168 (478)
T PLN02280 89 LAYQPDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQE 168 (478)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEECCCCCCEEEEEEecCCCcccC
Confidence 44446677889999999999999999999999999999999999987766689999999654458999999999999988
Q ss_pred cCCCCccccCCCcccccCCcHHHHHHHHHHHHHHhhcccCC---------------------------------------
Q 045912 94 LVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHRRKDQLN--------------------------------------- 134 (218)
Q Consensus 94 ~~~~pf~~~~~g~~~~~G~d~~~a~ll~aa~~L~~~~~~~~--------------------------------------- 134 (218)
.++|+|.+..+|++||||||+|+|++++++++|++.+..++
T Consensus 169 ~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~ 248 (478)
T PLN02280 169 AVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALDDVEAIFAVHVSH 248 (478)
T ss_pred CCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHHHHHCCCCcCCCEEEEEecCC
Confidence 77788888888999999999999999999999986543222
Q ss_pred -----------------------------------------------------------------------------CCC
Q 045912 135 -----------------------------------------------------------------------------AAD 137 (218)
Q Consensus 135 -----------------------------------------------------------------------------~~N 137 (218)
+.|
T Consensus 249 ~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~~~tvnvg~I~GG~~~N 328 (478)
T PLN02280 249 EHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPLDSQVVSVTTMDGGNNLD 328 (478)
T ss_pred CCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEEccCCCC
Confidence 679
Q ss_pred ccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCCC
Q 045912 138 VISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 138 vIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
+||++|++.+|+|+.+.+..+++.++|+++++.++..+++++++++.......+||+.+++++++.+++++.+.+|.+
T Consensus 329 vIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~~~~~~~~~~pp~~n~~~l~~~~~~~a~~~~G~~ 406 (478)
T PLN02280 329 MIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSATVDFFEKQNTIYPPTVNNDAMYEHVRKVAIDLLGPA 406 (478)
T ss_pred EeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEeccccCCCCCccCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999888889988777511002347889999999999999988777765
No 4
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=1.9e-32 Score=236.60 Aligned_cols=209 Identities=15% Similarity=0.159 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec--------------------CCCc
Q 045912 7 EAFADQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP--------------------LVKT 66 (218)
Q Consensus 7 ~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~--------------------~~~~ 66 (218)
++|+++|.+++++.++++++++++||+|||+|++|.++++||+++|+++||++++. .+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
T PRK06915 2 EQLKKQICDYIESHEEEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSP 81 (422)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCc
Confidence 57899999999999999999999999999999999999999999999999997531 2468
Q ss_pred eEEEEecC-CCCcEEEEEeeCCCCCccc---cCCCCcccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC----
Q 045912 67 GIVAKIGS-GSHPFIALRADMDALPLQE---LVNWEHKSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN---- 134 (218)
Q Consensus 67 ~via~~~~-~~~~~i~~~~h~D~vp~~~---~~~~pf~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~---- 134 (218)
||+|++++ +++|+|+|+|||||||.++ |+.+||.+. .+|++||||| | |+++++|+|++.|++.+..+.
T Consensus 82 nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~ 161 (422)
T PRK06915 82 NIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVI 161 (422)
T ss_pred eEEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEE
Confidence 99999954 3468999999999999864 566799986 5899999998 6 777777888888887653322
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 162 ~~~~~dEE~g~~G~~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~~l~~ 241 (422)
T PRK06915 162 FQSVIEEESGGAGTLAAILRGYKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKSMFVIDHLRK 241 (422)
T ss_pred EEEecccccCCcchHHHHhcCcCCCEEEECCCCCccceeecccEEEEEEEEEeeccccCCCCcCcCHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHh----CCe
Q 045912 135 --------------------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVH----RCN 178 (218)
Q Consensus 135 --------------------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~----g~~ 178 (218)
..|+||++|++.+|+|+.+.+..+++.++|++.+++++... +..
T Consensus 242 l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~~~~~~~~~~~ 321 (422)
T PRK06915 242 LEEKRNDRITDPLYKGIPIPIPINIGKIEGGSWPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAELNDVDEWFVEHP 321 (422)
T ss_pred HHHHhccccCCCcccCCCCCceEeEEEeeCCCCCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHhccChhhhcCC
Confidence 46999999999999999999999999999999998876431 233
Q ss_pred EEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCCCC
Q 045912 179 AYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGPEN 216 (218)
Q Consensus 179 ~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~~~ 216 (218)
+++++.+. .....++.+|+++++.+++++++++|.+.
T Consensus 322 ~~v~~~~~-~~~~~~~~~d~~lv~~l~~a~~~~~G~~~ 358 (422)
T PRK06915 322 VEVEWFGA-RWVPGELEENHPLMTTLEHNFVEIEGNKP 358 (422)
T ss_pred ceEEeecc-cCCcccCCCCCHHHHHHHHHHHHHhCCCC
Confidence 45544110 01122456788999999999998877753
No 5
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=4.9e-32 Score=229.82 Aligned_cols=186 Identities=41% Similarity=0.640 Sum_probs=162.5
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceee-cCCCceEEEEecCC-CCcEEEEEeeCCCCCccccCCCCcccc
Q 045912 25 ISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSC-PLVKTGIVAKIGSG-SHPFIALRADMDALPLQELVNWEHKSK 102 (218)
Q Consensus 25 ~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~-~~~~~~via~~~~~-~~~~i~~~~h~D~vp~~~~~~~pf~~~ 102 (218)
++++++|++|||+|++|.++++||.++|+++||++++ ....+||+++++++ ++|+|+|+|||||||.++++.+||...
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5899999999999999999999999999999999876 34568999999753 458999999999999887777999987
Q ss_pred CCCcccccCCcHHHHHHHHHHHHHHhhcccCC------------------------------------------------
Q 045912 103 IDGKMHACGHDAPTTMLLGEAKLLHRRKDQLN------------------------------------------------ 134 (218)
Q Consensus 103 ~~g~~~~~G~d~~~a~ll~aa~~L~~~~~~~~------------------------------------------------ 134 (218)
.+|++||||+|+++|++++++..|++....+.
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 77999999999999999999988876432111
Q ss_pred --------------------------------------------------------------------CCCccCCeEEEE
Q 045912 135 --------------------------------------------------------------------AADVISPRAEFG 146 (218)
Q Consensus 135 --------------------------------------------------------------------~~NvIPd~a~~~ 146 (218)
+.|+||++|++.
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~i~gG~~~nvvP~~~~~~ 241 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVVTVGIIEAGGAPNVIPDKASMS 241 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEEcCCCCcEECCeeEEE
Confidence 569999999999
Q ss_pred EeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCC
Q 045912 147 GTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 147 ~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+|+|+.+.+..+++.++|+++++..+...++++++++ ...+|++..++++++.+++++++++|.
T Consensus 242 ~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~----~~~~p~~~~~~~l~~~l~~a~~~~~g~ 305 (363)
T TIGR01891 242 GTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVELNY----DRGLPAVTNDPALTQILKEVARHVVGP 305 (363)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE----ecCCCCccCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999998888889998887 556677777899999999999987774
No 6
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=2.3e-30 Score=220.55 Aligned_cols=189 Identities=20% Similarity=0.236 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec---CCCceEEEEecCCCCcEEEEEeeCCCCCccc---cC
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP---LVKTGIVAKIGSGSHPFIALRADMDALPLQE---LV 95 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~---~~~~~via~~~~~~~~~i~~~~h~D~vp~~~---~~ 95 (218)
++.++++++|++|||+|++|.++++||.++|+++||+++.. .+++|++|+++++ +|+|+|+|||||||.++ |+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~-~~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSG-SPVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCC-CceEEEEeeecccCCCCcccCc
Confidence 56789999999999999999999999999999999997642 3568999999654 38999999999999864 56
Q ss_pred CCCcccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC-------------------------------------
Q 045912 96 NWEHKSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN------------------------------------- 134 (218)
Q Consensus 96 ~~pf~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~------------------------------------- 134 (218)
.+||+.. .+|++||||+ | +++|+++.|++.|.+.+..++
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~e 160 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIGE 160 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEec
Confidence 7899864 5799999998 4 788888888888887653322
Q ss_pred ---------------------------------------------------------------------------CCCcc
Q 045912 135 ---------------------------------------------------------------------------AADVI 139 (218)
Q Consensus 135 ---------------------------------------------------------------------------~~NvI 139 (218)
..|+|
T Consensus 161 p~~~~i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvi 240 (377)
T PRK08588 161 PSGHGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIINGGEQVNSV 240 (377)
T ss_pred CCCceeEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhhhcccCccCCCCceeeeEEeCCCcCCcC
Confidence 46999
Q ss_pred CCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccC--CHHHHHHHHHHHHhhcCCC
Q 045912 140 SPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALD--NDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 140 Pd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~--d~~l~~~l~~~~~~~~G~~ 215 (218)
|++|++.+|+|+.+.++.+++.++|+++++..+...++++++++ ...++|+.. ++++++.+++++++++|.+
T Consensus 241 p~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~ 314 (377)
T PRK08588 241 PDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLSLDI----YSNHRPVASDKDSKLVQLAKDVAKSYVGQD 314 (377)
T ss_pred CCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceEEEE----ecCCCCcCCCCCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999987766667788877 455666554 5699999999998877764
No 7
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=1.4e-29 Score=219.00 Aligned_cols=200 Identities=10% Similarity=0.117 Sum_probs=162.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhCCCCC--C-ChHHHHHHHHHHHHhcCCceeecC-----C------CceEEEEecC-CC
Q 045912 12 QILIETERDKNWLISIRRQIHENPELR--F-EVHNTNALIRSELDKLGITYSCPL-----V------KTGIVAKIGS-GS 76 (218)
Q Consensus 12 ~i~~~i~~~~~~~~~~~~~L~~~pe~~--~-~E~~~a~~i~~~L~~~G~~~~~~~-----~------~~~via~~~~-~~ 76 (218)
++.++++++++++++++++|++|||++ + +|.++++||+++|+++||+++... + ++|++|++++ ++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~ 83 (427)
T PRK13013 4 RLFAAIEARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD 83 (427)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC
Confidence 577788889999999999999999986 3 568999999999999999976431 1 5699999954 34
Q ss_pred CcEEEEEeeCCCCCccc-cCCCCcccc-CCCcccccC---CcHHHHHHHHHHHHHHhhcccCC-----------------
Q 045912 77 HPFIALRADMDALPLQE-LVNWEHKSK-IDGKMHACG---HDAPTTMLLGEAKLLHRRKDQLN----------------- 134 (218)
Q Consensus 77 ~~~i~~~~h~D~vp~~~-~~~~pf~~~-~~g~~~~~G---~d~~~a~ll~aa~~L~~~~~~~~----------------- 134 (218)
+|+|+|+|||||||.++ |+.+||++. .+|++||+| |||++|++|.|++.|++.+..++
T Consensus 84 ~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~ 163 (427)
T PRK13013 84 GDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGGFG 163 (427)
T ss_pred CCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCChh
Confidence 58999999999999864 688999976 479998765 67999999999999987542221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 164 g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~~~~ 243 (427)
T PRK13013 164 GVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFPLLA 243 (427)
T ss_pred HHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred ---------------------------CC----------CccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHh-C
Q 045912 135 ---------------------------AA----------DVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVH-R 176 (218)
Q Consensus 135 ---------------------------~~----------NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~-g 176 (218)
.. |+||++|++.+|+|+.+.+..+++.++|++++++++... +
T Consensus 244 ~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~~~~~ 323 (427)
T PRK13013 244 TRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKRARPG 323 (427)
T ss_pred cccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 12 899999999999999999999999999999998876533 5
Q ss_pred CeEEEEeeecccCCCCcccCC--HHHHHHHHHHHHhhcCCC
Q 045912 177 CNAYVDFQVEEFPLIPAALDN--DSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 177 ~~~~i~~~~~~~~~~p~~~~d--~~l~~~l~~~~~~~~G~~ 215 (218)
++++++. ...++|+.++ .++++.+.+++++.+|.+
T Consensus 324 ~~~~~~~----~~~~~p~~~~~~~~lv~~l~~a~~~~~g~~ 360 (427)
T PRK13013 324 FAYEIRD----LFEVLPTMTDRDAPVVRSVAAAIERVLGRQ 360 (427)
T ss_pred ceeEEEE----cccCCcccCCCCCHHHHHHHHHHHHhhCCC
Confidence 6666655 4456665544 599999999998877764
No 8
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.97 E-value=4.2e-29 Score=216.07 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=168.0
Q ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec--------------------CC
Q 045912 5 LDEAFADQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP--------------------LV 64 (218)
Q Consensus 5 ~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~--------------------~~ 64 (218)
.++.+++++.++++++.+++++++++|++|||++++|.++++||+++|+++||++++. .+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (427)
T PRK06837 3 LTPDLTQRILAAVDAGFDAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSG 82 (427)
T ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCC
Confidence 4667889999999999999999999999999999999999999999999999987541 24
Q ss_pred CceEEEEecC-C-CCcEEEEEeeCCCCCcc---ccCCCCcccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC-
Q 045912 65 KTGIVAKIGS-G-SHPFIALRADMDALPLQ---ELVNWEHKSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN- 134 (218)
Q Consensus 65 ~~~via~~~~-~-~~~~i~~~~h~D~vp~~---~~~~~pf~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~- 134 (218)
++||+|++++ + ++|+|+|+|||||||.+ .|+.+||.+. .+|++||||+ | |+++++|.|++.|++.+..++
T Consensus 83 ~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~ 162 (427)
T PRK06837 83 APNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAA 162 (427)
T ss_pred CceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCC
Confidence 6899999964 3 36899999999999986 4788999986 4799999998 4 788888888888887553221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 163 ~i~~~~~~dEE~~g~g~~~~~~~~~~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~ 242 (427)
T PRK06837 163 RVHFQSVIEEESTGNGALSTLQRGYRADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHLIQA 242 (427)
T ss_pred cEEEEEEeccccCCHhHHHHHhcCcCCCEEEEcCCCCCccccccceeEEEEEEEEeeccccCCcccCcCHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHh---
Q 045912 135 ------------------------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVH--- 175 (218)
Q Consensus 135 ------------------------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~--- 175 (218)
..|+||++|++.+++|+.+.+..+++.++|+++++..+...
T Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~~~~~~~~~~ 322 (427)
T PRK06837 243 LRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGDWASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLAAAARDDRFL 322 (427)
T ss_pred HHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCCCCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHHHHHhcChhh
Confidence 56999999999999999999999999999999998765432
Q ss_pred -CCeEEEEeeecccCCCCccc--CCHHHHHHHHHHHHhhcCCC
Q 045912 176 -RCNAYVDFQVEEFPLIPAAL--DNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 176 -g~~~~i~~~~~~~~~~p~~~--~d~~l~~~l~~~~~~~~G~~ 215 (218)
+..+++++. ....+|.. .+.++++.+++++++.+|.+
T Consensus 323 ~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~ 362 (427)
T PRK06837 323 SNNPPEVVWS---GFLAEGYVLEPGSEAEAALARAHAAVFGGP 362 (427)
T ss_pred hhCCCeEEEE---ecccCCcCCCCCCHHHHHHHHHHHHHhCCC
Confidence 223445431 12344443 45689999999998877754
No 9
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.97 E-value=2e-28 Score=209.97 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=157.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCC
Q 045912 11 DQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALP 90 (218)
Q Consensus 11 ~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp 90 (218)
+++.++++++++++++++++|++|||++++|.+++++|.++|+++||++.......|+++.++++ +|+|+|+|||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~DtVp 80 (395)
T TIGR03526 2 NQIKSEAEKYRGDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTVG 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeeccccC
Confidence 35788899999999999999999999999999999999999999999843222346899998643 38999999999999
Q ss_pred ccc---cCCCCcccc-CCCcccccC---CcHHHHHHHHHHHHHHhhcccCC-----------------------------
Q 045912 91 LQE---LVNWEHKSK-IDGKMHACG---HDAPTTMLLGEAKLLHRRKDQLN----------------------------- 134 (218)
Q Consensus 91 ~~~---~~~~pf~~~-~~g~~~~~G---~d~~~a~ll~aa~~L~~~~~~~~----------------------------- 134 (218)
+++ |+.+||... .+|++|||| |||++|++|+|++.|.+.+....
T Consensus 81 ~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~~~ 160 (395)
T TIGR03526 81 IGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDKIK 160 (395)
T ss_pred CCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccCCC
Confidence 864 567899875 478999999 57999999999998886542111
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 161 ~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~v~~i~~ 240 (395)
T TIGR03526 161 PEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGKGTLTVSEIFF 240 (395)
T ss_pred CCEEEecCCCCceEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCcccCccceeeeeeec
Confidence
Q ss_pred ---CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecc-----------cCCCCcc--cCCH
Q 045912 135 ---AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEE-----------FPLIPAA--LDND 198 (218)
Q Consensus 135 ---~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~-----------~~~~p~~--~~d~ 198 (218)
+.|+||++|++.+|+|+.+++..+++.++|+++++.. +..+++++.... ...+|++ ..++
T Consensus 241 g~~~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 316 (395)
T TIGR03526 241 SSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQ----GAEAEVEMYEYDRPSYTGLVYPTECYFPTWVLPEDH 316 (395)
T ss_pred CCCCCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHhc----CCcceEEEeccccccccccccccccccCccccCCCC
Confidence 4699999999999999999999999999999886542 223333321000 0023443 4567
Q ss_pred HHHHHHHHHHHhhcCCC
Q 045912 199 SLYLLVERVGKSLLGPE 215 (218)
Q Consensus 199 ~l~~~l~~~~~~~~G~~ 215 (218)
++++.+.+++++++|..
T Consensus 317 ~~~~~l~~~~~~~~g~~ 333 (395)
T TIGR03526 317 LITKAALETYKRLFGKE 333 (395)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999998887764
No 10
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.96 E-value=3.1e-28 Score=208.72 Aligned_cols=200 Identities=15% Similarity=0.133 Sum_probs=157.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCce-eecCCCceEEEEecCCCCcEEEEEeeCCCC
Q 045912 11 DQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITY-SCPLVKTGIVAKIGSGSHPFIALRADMDAL 89 (218)
Q Consensus 11 ~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~-~~~~~~~~via~~~~~~~~~i~~~~h~D~v 89 (218)
+++.++++++.+++++++++|++|||++++|.++++||.++|+++||++ ... ...|++|.++.+ +|+|+|+||||||
T Consensus 2 ~~~~~~i~~~~~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~~n~~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03320 2 NQIKSEAKKYRGDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEID-PMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEEC-CCCCEEEEeCCC-CcEEEEEeccccc
Confidence 3578889999999999999999999999999999999999999999974 433 346899998543 4899999999999
Q ss_pred Cccc---cCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhcccCC----------------------------
Q 045912 90 PLQE---LVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN---------------------------- 134 (218)
Q Consensus 90 p~~~---~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~---------------------------- 134 (218)
|+++ |+.+||.+. .+|++||||+ |+++|+++.|++.|++.+....
T Consensus 80 p~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03320 80 GIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI 159 (395)
T ss_pred CCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC
Confidence 9764 567899875 4789999995 6999999999999986542111
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 160 ~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~t~~v~~i~ 239 (395)
T TIGR03320 160 KPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGKGTLTVSEIF 239 (395)
T ss_pred CCCEEEEcCCCccceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCcccCcCceeeeeee
Confidence
Q ss_pred ----CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecc-----------cCCCCcc--cCC
Q 045912 135 ----AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEE-----------FPLIPAA--LDN 197 (218)
Q Consensus 135 ----~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~-----------~~~~p~~--~~d 197 (218)
+.|+||++|++.+|+|+.+.++.+++.++|++++.. .+..+++++.... ...+|++ ..+
T Consensus 240 ~g~~~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (395)
T TIGR03320 240 FSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV----QGAEAKVEMYNYDRPSYTGLVYPTECYFPTWVLPED 315 (395)
T ss_pred cCCCCcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhh----cCCCceEeeeccCcccccccccccccccCccccCCC
Confidence 469999999999999999999999999999987643 2333344431000 0124443 456
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 045912 198 DSLYLLVERVGKSLLGPEN 216 (218)
Q Consensus 198 ~~l~~~l~~~~~~~~G~~~ 216 (218)
+++++.+.+++++++|.+.
T Consensus 316 ~~~v~~l~~~~~~~~g~~~ 334 (395)
T TIGR03320 316 HLITKAALETYKRLFGKEP 334 (395)
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 7999999999998877753
No 11
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.96 E-value=2e-28 Score=209.16 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHhcCCceeec----CCCceEEEEecCCCCcEEEEEeeCCCCCccc--c
Q 045912 22 NWLISIRRQIHENPELRFEV-HNTNALIRSELDKLGITYSCP----LVKTGIVAKIGSGSHPFIALRADMDALPLQE--L 94 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E-~~~a~~i~~~L~~~G~~~~~~----~~~~~via~~~~~~~~~i~~~~h~D~vp~~~--~ 94 (218)
.++++++++|++|||++++| .++++||.++|+++|+++++. .+++||+|+++++.+|+|+|+|||||||.++ |
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~~~W 83 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDGQAW 83 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCCCCC
Confidence 46899999999999999887 599999999999999997652 2358999999755468999999999999753 6
Q ss_pred CCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhcccCC------------------------------------
Q 045912 95 VNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN------------------------------------ 134 (218)
Q Consensus 95 ~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~------------------------------------ 134 (218)
+.+||++. .+|++||||. ||++|+++++++.|.+......
T Consensus 84 ~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ 163 (385)
T PRK07522 84 TSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAAPLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVG 163 (385)
T ss_pred CCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhCCCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEEEEc
Confidence 78999986 4899999884 7999999999999876532111
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 164 ep~~~~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gG 243 (385)
T PRK07522 164 EPTSMRPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFDPPYSTLQTGTIQGG 243 (385)
T ss_pred cCCCCeeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCcceeEEeeeecC
Confidence
Q ss_pred -CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHH------HHHHhCCeEEEEeeecccCCCCcccCC--HHHHHHHH
Q 045912 135 -AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQ------QAAVHRCNAYVDFQVEEFPLIPAALDN--DSLYLLVE 205 (218)
Q Consensus 135 -~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~------~a~~~g~~~~i~~~~~~~~~~p~~~~d--~~l~~~l~ 205 (218)
..|+||++|++.+|+|+.+.+..+.+.++|++++++ .+...+++++++. ...+|++..+ +++++.++
T Consensus 244 ~~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~v~~~~ 319 (385)
T PRK07522 244 TALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHPEAAIEFEP----LSAYPGLDTAEDAAAARLVR 319 (385)
T ss_pred ccccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcCCCcEEEEe----ccCCCCCCCCCCcHHHHHHH
Confidence 358999999999999999999999999999999987 2444677777776 5567777554 68888887
Q ss_pred HHHH
Q 045912 206 RVGK 209 (218)
Q Consensus 206 ~~~~ 209 (218)
+++.
T Consensus 320 ~~~~ 323 (385)
T PRK07522 320 ALTG 323 (385)
T ss_pred HHhC
Confidence 7654
No 12
>PRK13004 peptidase; Reviewed
Probab=99.96 E-value=5.4e-28 Score=207.49 Aligned_cols=203 Identities=14% Similarity=0.112 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCC
Q 045912 10 ADQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDAL 89 (218)
Q Consensus 10 ~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~v 89 (218)
.+.+.++++++.+++++++++|++|||++++|.+++++|.++|+++||++......+|++|.+++++ |+|+|+||||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~~-~~i~~~~H~DtV 81 (399)
T PRK13004 3 FKLILMLAEKYKADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHGK-KLIAFDAHIDTV 81 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCCC-cEEEEEeccCcc
Confidence 3678899999999999999999999999999999999999999999998543334579999996554 899999999999
Q ss_pred Cccc---cCCCCcccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC----------------------------
Q 045912 90 PLQE---LVNWEHKSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN---------------------------- 134 (218)
Q Consensus 90 p~~~---~~~~pf~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~---------------------------- 134 (218)
|.++ |+.+||... .+|++||||+ | ++++++|+|++.|++.+..+.
T Consensus 82 p~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~~~ 161 (399)
T PRK13004 82 GIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEEDKI 161 (399)
T ss_pred CCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhcCC
Confidence 9753 567899865 4789999998 4 999999999999987653221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 162 ~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~v~~i~ 241 (399)
T PRK13004 162 KPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFLGKGTLTVSDIF 241 (399)
T ss_pred CCCEEEEccCCCCceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccccCCcCCCceEEEeeee
Confidence
Q ss_pred ----CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeee---------cccCCCCcc--cCCHH
Q 045912 135 ----AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQV---------EEFPLIPAA--LDNDS 199 (218)
Q Consensus 135 ----~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~---------~~~~~~p~~--~~d~~ 199 (218)
+.|+||++|++.+|+|+.+.+..+++.++|+++... ...+.++++.... .....+|+. ..+++
T Consensus 242 ~g~~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (399)
T PRK13004 242 STSPSRCAVPDSCAISIDRRLTVGETWESVLAEIRALPAV--KKANAKVSMYNYDRPSYTGLVYPTECYFPTWLYPEDHE 319 (399)
T ss_pred cCCCCCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHhh--ccccceEEEecccCCCcccccccccccccccccCCCCH
Confidence 479999999999999999999999999999888432 1223343332100 001234554 34689
Q ss_pred HHHHHHHHHHhhcCCC
Q 045912 200 LYLLVERVGKSLLGPE 215 (218)
Q Consensus 200 l~~~l~~~~~~~~G~~ 215 (218)
+++.+.+++++++|.+
T Consensus 320 ~~~~l~~a~~~~~g~~ 335 (399)
T PRK13004 320 FVKAAVEAYKGLFGKA 335 (399)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999998887764
No 13
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.96 E-value=5.8e-28 Score=207.94 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=158.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCCCChH---HHHHHHHHHHHhcCCceeecC----CCceEEEEecCCCCcEEEEE
Q 045912 11 DQILIETERDKNWLISIRRQIHENPELRFEVH---NTNALIRSELDKLGITYSCPL----VKTGIVAKIGSGSHPFIALR 83 (218)
Q Consensus 11 ~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~---~~a~~i~~~L~~~G~~~~~~~----~~~~via~~~~~~~~~i~~~ 83 (218)
+++.++++++.+++++++++|++|||++++|. ++++||.++|+++||++++.. .++||+|++++.++|+|+|+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~~~ill~ 105 (410)
T PRK06133 26 AELLAAAQQEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGKRRIMLI 105 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCCceEEEE
Confidence 45888899999999999999999999998764 899999999999999987632 35799999965445899999
Q ss_pred eeCCCCCccc-cCCCCccccCCCcccccCC---cHHHHHHHHHHHHHHhhcccCC-------------------------
Q 045912 84 ADMDALPLQE-LVNWEHKSKIDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN------------------------- 134 (218)
Q Consensus 84 ~h~D~vp~~~-~~~~pf~~~~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~------------------------- 134 (218)
|||||||.++ |+.+||. ..+|++||+|. ++++|++|++++.|++.+..+.
T Consensus 106 ~H~D~Vp~~~~w~~~Pf~-~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~ 184 (410)
T PRK06133 106 AHMDTVYLPGMLAKQPFR-IDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELIAEL 184 (410)
T ss_pred eecCccCCCCccCCCCEE-EECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHHHHH
Confidence 9999999754 6788997 45789999884 4999999999999987553221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 185 ~~~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~t~~~~~i~g 264 (410)
T PRK06133 185 AAQHDVVFSCEPGRAKDALTLATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGDPAKGTTLNWTVAKA 264 (410)
T ss_pred hccCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccCCCCCeEEEeeEEEC
Confidence
Q ss_pred --CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCC---HHHHHHHHHHHH
Q 045912 135 --AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDN---DSLYLLVERVGK 209 (218)
Q Consensus 135 --~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d---~~l~~~l~~~~~ 209 (218)
+.|+||++|++.+|+|+.+.+..+++.++|++++++ +...++++++++ ...+|++.++ +.+++.++++.+
T Consensus 265 G~~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~ 339 (410)
T PRK06133 265 GTNRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKN-KLVPDTEVTLRF----ERGRPPLEANAASRALAEHAQGIYG 339 (410)
T ss_pred CCCCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhc-cCCCCeEEEEEe----ccccCCcccCcchHHHHHHHHHHHH
Confidence 679999999999999999999999999999999987 334577777776 4567776544 367777766665
Q ss_pred h
Q 045912 210 S 210 (218)
Q Consensus 210 ~ 210 (218)
+
T Consensus 340 ~ 340 (410)
T PRK06133 340 E 340 (410)
T ss_pred H
Confidence 4
No 14
>PRK07338 hypothetical protein; Provisional
Probab=99.96 E-value=1e-27 Score=205.91 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHhcCCceeecC----------C-------CceE
Q 045912 9 FADQILIETERDKNWLISIRRQIHENPELRFEV---HNTNALIRSELDKLGITYSCPL----------V-------KTGI 68 (218)
Q Consensus 9 ~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E---~~~a~~i~~~L~~~G~~~~~~~----------~-------~~~v 68 (218)
+..++.++++++.+++++++++|+++||.++++ .+.++||+++|+++||+++... + +.||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 83 (402)
T PRK07338 4 EERAVLDLIDDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPAL 83 (402)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeE
Confidence 567789999999999999999999999999774 5789999999999999876421 1 2589
Q ss_pred EEEecCCCCcEEEEEeeCCCCCccccCCCCccc---cCCCcccccCC---cHHHHHHHHHHHHHHhhcccCC--------
Q 045912 69 VAKIGSGSHPFIALRADMDALPLQELVNWEHKS---KIDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN-------- 134 (218)
Q Consensus 69 ia~~~~~~~~~i~~~~h~D~vp~~~~~~~pf~~---~~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~-------- 134 (218)
+|+++++.+++|+|+|||||||++ .+||.. ..+|++||+|. +|++|++|+|++.|.+.+..+.
T Consensus 84 ~a~~~~~~~~~lll~gH~DvVp~~---~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~ 160 (402)
T PRK07338 84 HVSVRPEAPRQVLLTGHMDTVFPA---DHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLIN 160 (402)
T ss_pred EEEECCCCCccEEEEeecCccCCC---CCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 999964433689999999999975 389986 35899999884 5999999999999986543221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 161 ~dEE~g~~g~~~~~~~~~~~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~~l~~ 240 (402)
T PRK07338 161 PDEEIGSPASAPLLAELARGKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELALALHA 240 (402)
T ss_pred CCcccCChhhHHHHHHHhccCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHHHHHHHHHh
Confidence
Q ss_pred -------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCccc
Q 045912 135 -------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAAL 195 (218)
Q Consensus 135 -------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~ 195 (218)
+.|+||++|++++|+|+.+.+..+++.++|++++++.+...+++++++. ...+||+.
T Consensus 241 l~~~~~~~t~~vg~i~gG~~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~----~~~~~p~~ 316 (402)
T PRK07338 241 LNGQRDGVTVNVAKIDGGGPLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVNQRHGVSLHLHG----GFGRPPKP 316 (402)
T ss_pred hhccCCCcEEEEEEEecCCCCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccccCCCeEEEEEc----cccCCCCC
Confidence 6899999999999999999999999999999999887656677776654 33455543
Q ss_pred ---CCHHHHHHHHHHHHhhcCC
Q 045912 196 ---DNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 196 ---~d~~l~~~l~~~~~~~~G~ 214 (218)
.++++++.++++++. +|.
T Consensus 317 ~~~~~~~l~~~~~~~~~~-~g~ 337 (402)
T PRK07338 317 IDAAQQRLFEAVQACGAA-LGL 337 (402)
T ss_pred CCcchHHHHHHHHHHHHH-cCC
Confidence 345799999887765 454
No 15
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.96 E-value=1.9e-27 Score=202.50 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec--CCCceEEEEecCCCCcEEEEEeeCCCCCccc---cCCC
Q 045912 23 WLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP--LVKTGIVAKIGSGSHPFIALRADMDALPLQE---LVNW 97 (218)
Q Consensus 23 ~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~--~~~~~via~~~~~~~~~i~~~~h~D~vp~~~---~~~~ 97 (218)
++++++++|++|||++++|.+++++|.++|+++||++++. .+.+|+++++++ .+|+|+|+|||||||.++ |+.+
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g~-~~~~i~l~~H~D~Vp~g~~~~w~~~ 81 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRGT-EGPHLCFAGHTDVVPPGDLEAWTSP 81 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEecC-CCCEEEEEeecccCCCCCcccCCCC
Confidence 5789999999999999999999999999999999998752 346799999854 358999999999999864 6778
Q ss_pred Ccccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC---------------------------------------
Q 045912 98 EHKSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN--------------------------------------- 134 (218)
Q Consensus 98 pf~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~--------------------------------------- 134 (218)
||.+. .+|++||||+ | |++++++.+++.+.+.+..++
T Consensus 82 Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ 161 (375)
T PRK13009 82 PFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVG 161 (375)
T ss_pred CCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEEc
Confidence 99986 4899999998 4 888988888888876543221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 162 ep~~~~~~~~~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~i~~G~~ 241 (375)
T PRK13009 162 EPTSTERLGDVIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITNIDAGTG 241 (375)
T ss_pred CCCcccCCCCeEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCCCccCCCceEEEEEEecCCC
Confidence
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCccc-CCHHHHHHHHHHHHhhcC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAAL-DNDSLYLLVERVGKSLLG 213 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~-~d~~l~~~l~~~~~~~~G 213 (218)
..|+||++|++.+|+|+.+.+..+++.++|+++++. .++++++++ ...++|.. +++++++.+.+++++.+|
T Consensus 242 ~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~----~~~~~~~~~----~~~~~p~~~~~~~~~~~l~~a~~~~~g 313 (375)
T PRK13009 242 ATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDK----HGLDYTLEW----TLSGEPFLTPPGKLVDAVVAAIEAVTG 313 (375)
T ss_pred CCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHh----cCCCeEEEE----ecCCCcccCCCcHHHHHHHHHHHHHhC
Confidence 359999999999999999999999999999988873 367777776 44444443 347899999999988777
Q ss_pred CC
Q 045912 214 PE 215 (218)
Q Consensus 214 ~~ 215 (218)
.+
T Consensus 314 ~~ 315 (375)
T PRK13009 314 IT 315 (375)
T ss_pred CC
Confidence 65
No 16
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.96 E-value=1.2e-27 Score=204.20 Aligned_cols=183 Identities=19% Similarity=0.198 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhcCCceeec-----CCCceEEEEecCCCCcEEEEEeeCCCC
Q 045912 22 NWLISIRRQIHENPELRFEV-------HNTNALIRSELDKLGITYSCP-----LVKTGIVAKIGSGSHPFIALRADMDAL 89 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E-------~~~a~~i~~~L~~~G~~~~~~-----~~~~~via~~~~~~~~~i~~~~h~D~v 89 (218)
+++++++++||+|||+|++| .++++||.++|+++|++++.. .+++|++|++++++ ++|+|+||||||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~~-~~il~~~H~Dvv 83 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSGE-GGLLLAGHTDTV 83 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCCC-CeEEEEeeecee
Confidence 47899999999999999876 579999999999999987642 24679999995443 689999999999
Q ss_pred Ccc--ccCCCCcccc-CCCcccccC---CcHHHHHHHHHHHHHHhhcccCC-----------------------------
Q 045912 90 PLQ--ELVNWEHKSK-IDGKMHACG---HDAPTTMLLGEAKLLHRRKDQLN----------------------------- 134 (218)
Q Consensus 90 p~~--~~~~~pf~~~-~~g~~~~~G---~d~~~a~ll~aa~~L~~~~~~~~----------------------------- 134 (218)
|.+ +|+.+||+.. .+|++|||| |||++|++|++++.|++......
T Consensus 84 p~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~d~ 163 (383)
T PRK05111 84 PFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLTKLKKPLYILATADEETSMAGARAFAEATAIRPDC 163 (383)
T ss_pred cCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhcCCCCCeEEEEEeccccCcccHHHHHhcCCCCCCE
Confidence 975 3688999964 589999887 57999999999999875321111
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 164 ~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~t~~i~~i 243 (383)
T PRK05111 164 AIIGEPTSLKPVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNPAFTVPYPTLNLGHI 243 (383)
T ss_pred EEEcCCCCCceeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCccCCCCCCceeEeee
Confidence
Q ss_pred ----CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcc--cCCHHHHHHHHHHH
Q 045912 135 ----AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAA--LDNDSLYLLVERVG 208 (218)
Q Consensus 135 ----~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~--~~d~~l~~~l~~~~ 208 (218)
..|+||++|++.+|+|+.+.++.+++.++|++.++.++..++++++++.. ....|++ ..++++++.+++++
T Consensus 244 ~gg~~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~ 320 (383)
T PRK05111 244 HGGDAPNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRITVAPL---HPPIPGYECPADHQLVRVVEKLL 320 (383)
T ss_pred ecCCcCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeEEEecc---ccCCCCcCCCCCCHHHHHHHHHh
Confidence 57999999999999999999999999999999999888778888777641 1234543 34568888776654
No 17
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.96 E-value=1.4e-27 Score=203.06 Aligned_cols=182 Identities=16% Similarity=0.186 Sum_probs=147.4
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec--CCCceEEEEecCCCCcEEEEEeeCCCCCccc---cCCCCc
Q 045912 25 ISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP--LVKTGIVAKIGSGSHPFIALRADMDALPLQE---LVNWEH 99 (218)
Q Consensus 25 ~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~--~~~~~via~~~~~~~~~i~~~~h~D~vp~~~---~~~~pf 99 (218)
++++++|++|||+|++|.++++||.++|+++||+++.. .+..|+++++++ .+|+|+|+|||||||.++ |+.+||
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 68999999999999999999999999999999997653 245789998754 459999999999999863 678999
Q ss_pred ccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC-----------------------------------------
Q 045912 100 KSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN----------------------------------------- 134 (218)
Q Consensus 100 ~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~----------------------------------------- 134 (218)
++. .+|++||||| | +++++++.+++.+.+.+..++
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 975 5799999998 6 778877878777765432221
Q ss_pred ------------------------------------------------------------------------------CC
Q 045912 135 ------------------------------------------------------------------------------AA 136 (218)
Q Consensus 135 ------------------------------------------------------------------------------~~ 136 (218)
..
T Consensus 161 ~~~~~~~~~i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~t~~i~~i~~g~~~~ 240 (370)
T TIGR01246 161 SSVKKLGDVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAGTGAN 240 (370)
T ss_pred CCcccCCceEEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhccCCccCCCCceEeeeeecCCCCC
Confidence 35
Q ss_pred CccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCc-ccCCHHHHHHHHHHHHhhcCCC
Q 045912 137 DVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPA-ALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 137 NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~-~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
|+||++|++.+|+|+.+.+..+++.++|+++++. .++++++++ ...++| ..+++++++.+.+++++.+|.+
T Consensus 241 nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~----~~~~~~v~~----~~~~~p~~~~~~~~~~~~~~a~~~~~g~~ 312 (370)
T TIGR01246 241 NVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQ----HGLDYDLEW----SLSGEPFLTNDGKLIDKAREAIEETNGIK 312 (370)
T ss_pred cccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH----cCCCEEEEE----ecCCcceeCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999888754 467777776 333333 3458899999999998877764
No 18
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=204.80 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=155.7
Q ss_pred HhHHHHHHHHHHHHhCCCCCC-----ChHHHHHHHHHHHHhcCCc-eeecC-------C--CceEEEEecCC-CCcEEEE
Q 045912 19 RDKNWLISIRRQIHENPELRF-----EVHNTNALIRSELDKLGIT-YSCPL-------V--KTGIVAKIGSG-SHPFIAL 82 (218)
Q Consensus 19 ~~~~~~~~~~~~L~~~pe~~~-----~E~~~a~~i~~~L~~~G~~-~~~~~-------~--~~~via~~~~~-~~~~i~~ 82 (218)
++++++++++++|++|||+++ .|.+++++|.++|+++||+ +++.. + ++|+++.++++ ++++|+|
T Consensus 2 ~~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll 81 (400)
T PRK13983 2 ELRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWI 81 (400)
T ss_pred chHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEE
Confidence 356789999999999999983 5999999999999999998 76421 1 58999999653 3479999
Q ss_pred EeeCCCCCccc---cCCCCccccC-CCcccccCC---cHHHHHHHHHHHHHHhhcccCC---------------------
Q 045912 83 RADMDALPLQE---LVNWEHKSKI-DGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN--------------------- 134 (218)
Q Consensus 83 ~~h~D~vp~~~---~~~~pf~~~~-~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~--------------------- 134 (218)
+|||||||.++ |+.+||.+.. +|++||||. ++++++++.|++.|.+.+..++
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~ 161 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQY 161 (400)
T ss_pred EeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHH
Confidence 99999999764 6789998764 789999994 3677777778888876543222
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 162 ~~~~~~~~~~~~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~ 241 (400)
T PRK13983 162 LLKKHPELFKKDDLILVPDAGNPDGSFIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEKFNAK 241 (400)
T ss_pred HHhhcccccCCCCEEEEecCCCCCCceeEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Confidence
Q ss_pred ---------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccC-CC-
Q 045912 135 ---------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFP-LI- 191 (218)
Q Consensus 135 ---------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~-~~- 191 (218)
+.|+||++|++.+|+|+.+.++.+++.++|+++++..+...+.+++++. .. .+
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v~~~~----~~~~~~ 317 (400)
T PRK13983 242 DPLFDPPYSTFEPTKKEANVDNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKIEVEI----VQREQA 317 (400)
T ss_pred ccccCCCCcccccceeecCCcCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCcceeEEE----eeccCC
Confidence 4599999999999999999999999999999999988766677777765 22 22
Q ss_pred -CcccCCHHHHHHHHHHHHhhcCCC
Q 045912 192 -PAALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 192 -p~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
+++..++++++.+.+++++.+|.+
T Consensus 318 ~~~~~~~~~~v~~l~~a~~~~~g~~ 342 (400)
T PRK13983 318 PPPTPPDSEIVKKLKRAIKEVRGIE 342 (400)
T ss_pred ccCCCCCcHHHHHHHHHHHHhcCCC
Confidence 345678899999999999888764
No 19
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.96 E-value=5.5e-28 Score=205.85 Aligned_cols=186 Identities=17% Similarity=0.158 Sum_probs=149.8
Q ss_pred HHHHHHHhCCC---CCCChHHHHHHHHHHHHhcCCceeec---CCCce----EEEEe-cCCCCcEEEEEeeCCCCCcc--
Q 045912 26 SIRRQIHENPE---LRFEVHNTNALIRSELDKLGITYSCP---LVKTG----IVAKI-GSGSHPFIALRADMDALPLQ-- 92 (218)
Q Consensus 26 ~~~~~L~~~pe---~~~~E~~~a~~i~~~L~~~G~~~~~~---~~~~~----via~~-~~~~~~~i~~~~h~D~vp~~-- 92 (218)
+++++|++||| ++++|.++++||.++|+++||++++. .+..| +++.+ +.+.+|+|+|+|||||||.+
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 68899999999 88899999999999999999998652 12233 45555 43345899999999999976
Q ss_pred -ccCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhcccCC---------------------------------
Q 045912 93 -ELVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN--------------------------------- 134 (218)
Q Consensus 93 -~~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~--------------------------------- 134 (218)
+|+.+||... .+|++||||+ ++++|++|.+++.|.+.+..++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 4677899975 5789999997 4899999999999987543222
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 162 i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~i~~i~ 241 (375)
T TIGR01910 162 LIPEPSGGDNIVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPITFNPGVIK 241 (375)
T ss_pred EECCCCCCCceEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccCCCccccceeEE
Confidence
Q ss_pred ---CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCC---cccCCHHHHHHHHHHH
Q 045912 135 ---AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIP---AALDNDSLYLLVERVG 208 (218)
Q Consensus 135 ---~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p---~~~~d~~l~~~l~~~~ 208 (218)
..|+||++|++.+|+|+.+.+..+.+.++|+++++..+...+++++++. ...++ .+..++++++.+++++
T Consensus 242 gG~~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 317 (375)
T TIGR01910 242 GGDWVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYENEP----VVKWSGPNETPPDSRLVKALEAII 317 (375)
T ss_pred CCCCcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhCCC----eeeecCCcCCCCCCHHHHHHHHHH
Confidence 4699999999999999999999999999999999988766677766654 22222 4456789999999999
Q ss_pred HhhcCCC
Q 045912 209 KSLLGPE 215 (218)
Q Consensus 209 ~~~~G~~ 215 (218)
++.+|.+
T Consensus 318 ~~~~g~~ 324 (375)
T TIGR01910 318 KKVRGIE 324 (375)
T ss_pred HHHhCCC
Confidence 8877765
No 20
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.96 E-value=1e-26 Score=200.90 Aligned_cols=204 Identities=17% Similarity=0.139 Sum_probs=159.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhCCCCC---CChHHHHHHHHHHHHhcCCceeec---CCCceEEEEecC-CC--CcEEEE
Q 045912 12 QILIETERDKNWLISIRRQIHENPELR---FEVHNTNALIRSELDKLGITYSCP---LVKTGIVAKIGS-GS--HPFIAL 82 (218)
Q Consensus 12 ~i~~~i~~~~~~~~~~~~~L~~~pe~~---~~E~~~a~~i~~~L~~~G~~~~~~---~~~~~via~~~~-~~--~~~i~~ 82 (218)
++.+++++..+++++++++|++|||++ ++|.++++||+++|+++||++++. .+++|+++++++ ++ +|+|+|
T Consensus 3 ~~~~~i~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll 82 (421)
T PRK08596 3 QLLEQIELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLII 82 (421)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEE
Confidence 467888888899999999999999998 478899999999999999998752 357899999953 22 368999
Q ss_pred EeeCCCCCccc---cCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhcccCC---------------------
Q 045912 83 RADMDALPLQE---LVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN--------------------- 134 (218)
Q Consensus 83 ~~h~D~vp~~~---~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~--------------------- 134 (218)
+|||||||+++ |+.+||... .+|++||||+ +|++|+++.|++.|++.+..++
T Consensus 83 ~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~~ 162 (421)
T PRK08596 83 NGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTLQC 162 (421)
T ss_pred eccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHHHH
Confidence 99999999864 677899876 4899999998 4999999999999987654332
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 163 ~~~~~~~d~~i~~ep~~~~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~~~~~~ 242 (421)
T PRK08596 163 CERGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELERHWAVM 242 (421)
T ss_pred HhcCCCCCEEEECCCCCCccccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHHHHHhhc
Confidence
Q ss_pred ----------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHh----CCeEEEEeeec--
Q 045912 135 ----------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVH----RCNAYVDFQVE-- 186 (218)
Q Consensus 135 ----------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~----g~~~~i~~~~~-- 186 (218)
..|+||++|++.+|+|+.++++.+++.++|++.++..+... ...+++++.+.
T Consensus 243 ~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (421)
T PRK08596 243 KSYPGFPPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVAAADPWLRENPPQFKWGGESM 322 (421)
T ss_pred ccCccCCCCCcceeeeeeeCCCCCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHHhcChhhhhCCceeEEecccc
Confidence 45999999999999999999999999999999998754311 11122221000
Q ss_pred -c--cCCCCccc--CCHHHHHHHHHHHHhhcCCC
Q 045912 187 -E--FPLIPAAL--DNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 187 -~--~~~~p~~~--~d~~l~~~l~~~~~~~~G~~ 215 (218)
. ...+|+.. .+.++++.+.+++++.+|.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~~ 356 (421)
T PRK08596 323 IEDRGEIFPSLEIDSEHPAVKTLSSAHESVLSKN 356 (421)
T ss_pred cccccccCCCccCCCCchHHHHHHHHHHHHhCCC
Confidence 0 11345543 46789999999998887764
No 21
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=5.9e-27 Score=200.69 Aligned_cols=194 Identities=19% Similarity=0.286 Sum_probs=158.5
Q ss_pred HHhHHHHHHHHHHHHhCCCCC---CChHHHHHHHHHHHHhcCCceeecC---C--------CceEEEEecCCCCcEEEEE
Q 045912 18 ERDKNWLISIRRQIHENPELR---FEVHNTNALIRSELDKLGITYSCPL---V--------KTGIVAKIGSGSHPFIALR 83 (218)
Q Consensus 18 ~~~~~~~~~~~~~L~~~pe~~---~~E~~~a~~i~~~L~~~G~~~~~~~---~--------~~~via~~~~~~~~~i~~~ 83 (218)
+.+.+++++++++|++|||++ .+|.++++||+++|+++||++++.. + +.|+++..++++ |+|+|+
T Consensus 2 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ill~ 80 (394)
T PRK08651 2 EAMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSGN-PHLHFN 80 (394)
T ss_pred chhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCCC-ceEEEE
Confidence 346789999999999999998 6788999999999999999876531 1 135778765444 899999
Q ss_pred eeCCCCCccc-c-CCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhcc-cCC----------------------
Q 045912 84 ADMDALPLQE-L-VNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRKD-QLN---------------------- 134 (218)
Q Consensus 84 ~h~D~vp~~~-~-~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~-~~~---------------------- 134 (218)
|||||||.++ + +.+||++. .+|++||||+ +++++++|.+++.|++.+. .+.
T Consensus 81 ~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~v~~~~~~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 81 GHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAGDGNIELAIVPDEETGGTGTGYLVEEGK 160 (394)
T ss_pred eeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcCCCCEEEEEecCccccchhHHHHHhccC
Confidence 9999999864 3 78999986 4789999997 5999999999999976431 111
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 161 ~~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T PRK08651 161 VTPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKYEYDDERGAKPT 240 (394)
T ss_pred CCCCEEEEecCCCCCceEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhccccccccccCCCc
Confidence
Q ss_pred ------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccC--CHHH
Q 045912 135 ------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALD--NDSL 200 (218)
Q Consensus 135 ------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~--d~~l 200 (218)
+.|+||++|++.+|+|+.+.+..+++.++|+++++..+...++++++++ ...+++..+ +.++
T Consensus 241 ~~ig~~~i~gG~~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~l 316 (394)
T PRK08651 241 VTLGGPTVEGGTKTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEVEFEI----TPFSEAFVTDPDSEL 316 (394)
T ss_pred eeecceeeeCCCCCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCeeEEE----ecccCCccCCCCCHH
Confidence 2699999999999999999999999999999999998887888888876 445566554 4589
Q ss_pred HHHHHHHHHhhcCCCC
Q 045912 201 YLLVERVGKSLLGPEN 216 (218)
Q Consensus 201 ~~~l~~~~~~~~G~~~ 216 (218)
++.+++++++++|.+.
T Consensus 317 ~~~~~~a~~~~~g~~~ 332 (394)
T PRK08651 317 VKALREAIREVLGVEP 332 (394)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999988777653
No 22
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.95 E-value=9e-27 Score=197.44 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=144.4
Q ss_pred HHHHHHHhCCCCCCCh-HHHHHHHHHHHHhcCCceeecC-----CCceEEEEecCCCCcEEEEEeeCCCCCcc--ccCCC
Q 045912 26 SIRRQIHENPELRFEV-HNTNALIRSELDKLGITYSCPL-----VKTGIVAKIGSGSHPFIALRADMDALPLQ--ELVNW 97 (218)
Q Consensus 26 ~~~~~L~~~pe~~~~E-~~~a~~i~~~L~~~G~~~~~~~-----~~~~via~~~~~~~~~i~~~~h~D~vp~~--~~~~~ 97 (218)
+++++|++|||++++| .+.++||.++|+++|++++... +++|++|.+++..+|+|+|+|||||||.+ .|+.+
T Consensus 1 ~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~~~w~~~ 80 (364)
T TIGR01892 1 EILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDDAAWTRD 80 (364)
T ss_pred ChHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCCCcCCCC
Confidence 4788999999999865 7999999999999999876531 36899999965335899999999999985 35779
Q ss_pred Ccccc-CCCcccccC---CcHHHHHHHHHHHHHHhhcccCC---------------------------------------
Q 045912 98 EHKSK-IDGKMHACG---HDAPTTMLLGEAKLLHRRKDQLN--------------------------------------- 134 (218)
Q Consensus 98 pf~~~-~~g~~~~~G---~d~~~a~ll~aa~~L~~~~~~~~--------------------------------------- 134 (218)
||... .+|++|||| ||+++|++|++++.|++......
T Consensus 81 Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~~~d~~i~~ep~~~~ 160 (364)
T TIGR01892 81 PFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQLKKPLHLALTADEEVGCTGAPKMIEAGAGRPRHAIIGEPTRLI 160 (364)
T ss_pred CCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcCcCCCEEEEEEeccccCCcCHHHHHHhcCCCCCEEEECCCCCce
Confidence 99964 578999998 78999999999999976431111
Q ss_pred --------------------------------------------------------------------------CCCccC
Q 045912 135 --------------------------------------------------------------------------AADVIS 140 (218)
Q Consensus 135 --------------------------------------------------------------------------~~NvIP 140 (218)
..|+||
T Consensus 161 ~~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~gg~~~nviP 240 (364)
T TIGR01892 161 PVRAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIGVIQGGKAVNIIP 240 (364)
T ss_pred eEEeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCceEEEeeeecCCCCcccC
Confidence 359999
Q ss_pred CeEEEEEeEecCChHHHHHHHHHHHHHHHHHHH-HhCCeEEEEeeecccCCCCccc--CCHHHHHHHHHHH
Q 045912 141 PRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAA-VHRCNAYVDFQVEEFPLIPAAL--DNDSLYLLVERVG 208 (218)
Q Consensus 141 d~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~-~~g~~~~i~~~~~~~~~~p~~~--~d~~l~~~l~~~~ 208 (218)
++|++.+|+|+.+.+..+++.++|+++++..+. ..++++++++ ...+|++. .++++++.++++.
T Consensus 241 ~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~v~~~~~~~ 307 (364)
T TIGR01892 241 GACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQIEV----VSTDPGVNTEPDAELVAFLEELS 307 (364)
T ss_pred CeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceEEEEE----ccCCCCcCCCCCCHHHHHHHHHh
Confidence 999999999999999999999999999988653 4577777776 44556643 4568888876654
No 23
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.95 E-value=3.9e-26 Score=193.50 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=149.0
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecC------CCceEEEEecCC-CCcEEEEEeeCCCCCccccCC
Q 045912 24 LISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPL------VKTGIVAKIGSG-SHPFIALRADMDALPLQELVN 96 (218)
Q Consensus 24 ~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~------~~~~via~~~~~-~~~~i~~~~h~D~vp~~~~~~ 96 (218)
+++++++|++|||++++|.++++||.++|+++||+++... +++|+++.++++ ++|+|+|+|||||||.++
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--- 78 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--- 78 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC---
Confidence 6789999999999999999999999999999999976532 368999999543 348999999999999653
Q ss_pred CCccc-cCCCcccccC-----Cc--HHHHHHHHHHHHHHhhcccC-C---------------------------------
Q 045912 97 WEHKS-KIDGKMHACG-----HD--APTTMLLGEAKLLHRRKDQL-N--------------------------------- 134 (218)
Q Consensus 97 ~pf~~-~~~g~~~~~G-----~d--~~~a~ll~aa~~L~~~~~~~-~--------------------------------- 134 (218)
||.. ..+|++||+| +| +++|++|.+++.|++..... .
T Consensus 79 -~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~~~~~~~~~ 157 (361)
T TIGR01883 79 -GPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEETPHGTIEFIFTVKEELGLIGMRLFDESKITAAYGYCLD 157 (361)
T ss_pred -CCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCchhHhHhChhhcCcceeEEEe
Confidence 3333 3467888877 47 89999999999997643110 1
Q ss_pred ----------------------------------------------------------------------CCCccCCeEE
Q 045912 135 ----------------------------------------------------------------------AADVISPRAE 144 (218)
Q Consensus 135 ----------------------------------------------------------------------~~NvIPd~a~ 144 (218)
+.|+||++|+
T Consensus 158 ~~~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~i~~i~gG~~~nvVP~~~~ 237 (361)
T TIGR01883 158 APGEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGRIDEETTANIGSFSGGVNTNIVQDEQL 237 (361)
T ss_pred CCCCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccCCCCccccccceeecCCccCccCCceE
Confidence 6799999999
Q ss_pred EEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcc--cCCHHHHHHHHHHHHhhcCC
Q 045912 145 FGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAA--LDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 145 ~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~--~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.+|+|+.+.+..+.+.++|++.++..+...++++++++ ...+++. ..++++++.+++++++ +|.
T Consensus 238 ~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lv~~l~~a~~~-~g~ 304 (361)
T TIGR01883 238 IVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATLEEET----RLIYEGFKIHPQHPLMNIFKKAAKK-IGL 304 (361)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEE----EeccccccCCCCCHHHHHHHHHHHH-cCC
Confidence 999999999999999999999999988888888888776 4455655 4567999999998876 454
No 24
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.95 E-value=4.5e-26 Score=195.69 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHhcCCceee-c--CCCceEEEEecC-CC-CcEEEEEeeCCCCCcc-
Q 045912 21 KNWLISIRRQIHENPELRFE--VHNTNALIRSELDKLGITYSC-P--LVKTGIVAKIGS-GS-HPFIALRADMDALPLQ- 92 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~--E~~~a~~i~~~L~~~G~~~~~-~--~~~~~via~~~~-~~-~~~i~~~~h~D~vp~~- 92 (218)
.+++++++++|++|||+++. |.++++||+++|+++|++++. . .+++|+++++++ ++ +|+|+|+|||||||.+
T Consensus 8 ~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~ 87 (400)
T TIGR01880 8 EDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFR 87 (400)
T ss_pred hHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCc
Confidence 56788999999999999764 789999999999999998754 2 357899999954 33 3899999999999975
Q ss_pred -ccCCCCcccc--CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC--------------------------------
Q 045912 93 -ELVNWEHKSK--IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN-------------------------------- 134 (218)
Q Consensus 93 -~~~~~pf~~~--~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~-------------------------------- 134 (218)
+|+.+||.+. .+|++||||+ | +++|+++.|++.|.+.+..++
T Consensus 88 ~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~~ 167 (400)
T TIGR01880 88 EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALN 167 (400)
T ss_pred ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCCc
Confidence 4678999985 4799999998 5 889999999999987543221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 168 ~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (400)
T TIGR01880 168 LGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIGDV 247 (400)
T ss_pred eEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccccccc
Confidence
Q ss_pred ------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCC-cc--cCCHH
Q 045912 135 ------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIP-AA--LDNDS 199 (218)
Q Consensus 135 ------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p-~~--~~d~~ 199 (218)
..|+||++|++.+|+|+.+.+..+++.++|+++++.. ..++++++.. ....+ +. ..+++
T Consensus 248 ~t~~v~~i~gG~~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~ 321 (400)
T TIGR01880 248 TSVNLTKLKGGVQSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADA--GEGVTYEFSQ----HSGKPLVTPHDDSNP 321 (400)
T ss_pred ceeecceeccCCcCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhcc--CCceEEEEee----cCCCCCCCCCCCCCH
Confidence 4599999999999999999999999999999998863 2345555543 22222 22 34678
Q ss_pred HHHHHHHHHHhh
Q 045912 200 LYLLVERVGKSL 211 (218)
Q Consensus 200 l~~~l~~~~~~~ 211 (218)
+++.+++++++.
T Consensus 322 lv~~l~~a~~~~ 333 (400)
T TIGR01880 322 WWVAFKDAVKEM 333 (400)
T ss_pred HHHHHHHHHHHc
Confidence 999999988874
No 25
>PRK07907 hypothetical protein; Provisional
Probab=99.95 E-value=1.1e-25 Score=195.90 Aligned_cols=200 Identities=14% Similarity=0.097 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHhcCC-ceeec--CCCceEEEEecCC-CCcE
Q 045912 10 ADQILIETERDKNWLISIRRQIHENPELRFE------VHNTNALIRSELDKLGI-TYSCP--LVKTGIVAKIGSG-SHPF 79 (218)
Q Consensus 10 ~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~------E~~~a~~i~~~L~~~G~-~~~~~--~~~~~via~~~~~-~~~~ 79 (218)
+.++.++++++.+++++++++|++|||++++ |.++++||.++|+++|| ++++. .+++|++|+++++ ++|+
T Consensus 6 ~~~~~~~i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~~~ 85 (449)
T PRK07907 6 ADDLRARVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGAPT 85 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCCCE
Confidence 4578999999999999999999999999863 68899999999999998 66653 3578999999643 3589
Q ss_pred EEEEeeCCCCCcc---ccCCCCccccC-CCcccccCC---cHHHHHHHHHHHHHHhhcccCC------------------
Q 045912 80 IALRADMDALPLQ---ELVNWEHKSKI-DGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN------------------ 134 (218)
Q Consensus 80 i~~~~h~D~vp~~---~~~~~pf~~~~-~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~------------------ 134 (218)
|+|.|||||||.+ +|+.+||.... +|++||+|. +|++|+++.|++.| .......
T Consensus 86 lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~~~~~~~i~~~~~~dEE~g~~g~~~ 164 (449)
T PRK07907 86 VLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-GGDLPVGVTVFVEGEEEMGSPSLER 164 (449)
T ss_pred EEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-ccCCCCcEEEEEEcCcccCCccHHH
Confidence 9999999999985 37889999764 899999885 59999999999887 2211111
Q ss_pred -----------------------------------------------------------------------------C--
Q 045912 135 -----------------------------------------------------------------------------A-- 135 (218)
Q Consensus 135 -----------------------------------------------------------------------------~-- 135 (218)
.
T Consensus 165 ~l~~~~~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~~ 244 (449)
T PRK07907 165 LLAEHPDLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGNV 244 (449)
T ss_pred HHHhchHhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCCE
Confidence 0
Q ss_pred --------------------------------------------------------------CCccCCeEEEEEeEecCC
Q 045912 136 --------------------------------------------------------------ADVISPRAEFGGTLRSLT 153 (218)
Q Consensus 136 --------------------------------------------------------------~NvIPd~a~~~~diR~~~ 153 (218)
.|+||++|++.+|+|..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~a~~~~diR~~p 324 (449)
T PRK07907 245 AVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNALPPSARARLSLRVAP 324 (449)
T ss_pred eCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCEecCceEEEEEEEcCC
Confidence 089999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcc--cCCHHHHHHHHHHHHhhcCCC
Q 045912 154 TEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAA--LDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 154 ~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~--~~d~~l~~~l~~~~~~~~G~~ 215 (218)
+++.+++.+.|++.++... ..+.++++++ ...++|. ..+.++++.+++++++.+|.+
T Consensus 325 ~~~~e~v~~~l~~~l~~~~-~~~~~~~~~~----~~~~~p~~~~~~~~~~~~l~~a~~~~~g~~ 383 (449)
T PRK07907 325 GQDAAEAQDALVAHLEAHA-PWGAHVTVER----GDAGQPFAADASGPAYDAARAAMREAWGKD 383 (449)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCcEEEEEE----CCCcCceeCCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999887642 2255666665 3334443 356799999999999888765
No 26
>PRK08201 hypothetical protein; Provisional
Probab=99.94 E-value=1.2e-25 Score=196.01 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHhcCCc-eeec--CCCceEEEEecC-CCCc
Q 045912 9 FADQILIETERDKNWLISIRRQIHENPELRF------EVHNTNALIRSELDKLGIT-YSCP--LVKTGIVAKIGS-GSHP 78 (218)
Q Consensus 9 ~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~------~E~~~a~~i~~~L~~~G~~-~~~~--~~~~~via~~~~-~~~~ 78 (218)
|++++.++++++.+++++++++|++|||+++ +|.+.++||+++|+++||+ ++.. .++.||+|++.+ +.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~~ 80 (456)
T PRK08201 1 MMQQVEAYLRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGKP 80 (456)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 4578889999999999999999999999985 5678999999999999997 4432 246789998843 3458
Q ss_pred EEEEEeeCCCCCcc---ccCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhh
Q 045912 79 FIALRADMDALPLQ---ELVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRR 129 (218)
Q Consensus 79 ~i~~~~h~D~vp~~---~~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~ 129 (218)
+|+|.|||||||++ .|+.+||... .+|++||+|. +|++|+++.|++.|.+.
T Consensus 81 ~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~ 138 (456)
T PRK08201 81 TVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKV 138 (456)
T ss_pred EEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHh
Confidence 99999999999975 3788999976 4789999884 59999999999888653
No 27
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.94 E-value=2.8e-25 Score=187.61 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc-CCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCccccCCCC
Q 045912 20 DKNWLISIRRQIHENPELRFEVHNTNALIRSELDKL-GITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQELVNWE 98 (218)
Q Consensus 20 ~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~-G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~~~~~p 98 (218)
+.+++++++++|++|||++++|.++++||.++|+++ |+++... ++|++++++++++++|+|+|||||||.++ ..|
T Consensus 5 ~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~--~~~ 80 (352)
T PRK13007 5 LAADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIRH--GNSVVARTDLGRPSRVVLAGHLDTVPVAD--NLP 80 (352)
T ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEec--CCeEEEEccCCCCCeEEEEccccccCCCC--CCC
Confidence 457899999999999999999999999999999996 8887653 47999999655557899999999999764 233
Q ss_pred ccccCCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC-----------------------------------------
Q 045912 99 HKSKIDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN----------------------------------------- 134 (218)
Q Consensus 99 f~~~~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~----------------------------------------- 134 (218)
+. ..+|++||||+ | +++|++|.+++.|.+....+.
T Consensus 81 ~~-~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~~~~ 159 (352)
T PRK13007 81 SR-REGDRLYGCGASDMKSGLAVMLHLAATLAEPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEPTDGV 159 (352)
T ss_pred cc-eeCCEEEccCcccccHHHHHHHHHHHHhhccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEecCCCCc
Confidence 33 34799999998 5 999999999998854221110
Q ss_pred ----------------------------------------------------------------------CCCccCCeEE
Q 045912 135 ----------------------------------------------------------------------AADVISPRAE 144 (218)
Q Consensus 135 ----------------------------------------------------------------------~~NvIPd~a~ 144 (218)
+.|+||++|+
T Consensus 160 i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~nviP~~a~ 239 (352)
T PRK13007 160 IEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVDGLTYREGLNAVRISGGVAGNVIPDECV 239 (352)
T ss_pred eEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccCCCCccceeEeEeEecCCcCccCCCeEE
Confidence 6799999999
Q ss_pred EEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHH
Q 045912 145 FGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVG 208 (218)
Q Consensus 145 ~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~ 208 (218)
+.+|+|+.+.+..+++.++|+++++..+ ++++... ...+ ....+.++++.+.+++
T Consensus 240 ~~~diR~~p~~~~~~v~~~i~~~~~~~~-----~~~~~~~---~~~~-~~~~~~~~~~~~~~~~ 294 (352)
T PRK13007 240 VNVNYRFAPDRSLEEALAHVREVFDGFA-----EVEVTDL---APGA-RPGLDHPAAAALVAAV 294 (352)
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHhcccc-----EEEeecc---cCCC-CCCCCCHHHHHHHHHh
Confidence 9999999999999999999998876532 3433220 1112 2234567777776653
No 28
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.94 E-value=6e-25 Score=185.16 Aligned_cols=176 Identities=13% Similarity=0.058 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecC-C-CceEEEEecCCCCcEEEEEeeCCCCCccccCCCCc
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPL-V-KTGIVAKIGSGSHPFIALRADMDALPLQELVNWEH 99 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~-~-~~~via~~~~~~~~~i~~~~h~D~vp~~~~~~~pf 99 (218)
+++++++++||+|||++++|.++++||.++|+++||+++... + ..|+++ +++|+|+|+|||||||.+. .|+
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~----~~~~~i~l~~H~D~vp~~~---~~~ 74 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV----NSKAELFVEVHYDTVPVRA---EFF 74 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc----CCCCEEEEEccccccCCCC---CCE
Confidence 467899999999999999999999999999999999987632 2 356665 2358999999999999642 232
Q ss_pred cccCCCcccccC---CcHHHHHHHHHHHHHHhhcccCC------------------------------------------
Q 045912 100 KSKIDGKMHACG---HDAPTTMLLGEAKLLHRRKDQLN------------------------------------------ 134 (218)
Q Consensus 100 ~~~~~g~~~~~G---~d~~~a~ll~aa~~L~~~~~~~~------------------------------------------ 134 (218)
..+|++||+| ||+++|+++.|++.|.+......
T Consensus 75 --~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~dEE~g~~G~~~~~~~~~~d~~i~~ep~~~~i~~~~ 152 (347)
T PRK08652 75 --VDGVYVYGTGACDAKGGVAAILLALEELGKEFEDLNVGIAFVSDEEEGGRGSALFAERYRPKMAIVLEPTDLKVAIAH 152 (347)
T ss_pred --EECCEEEeccchhhhHHHHHHHHHHHHHhhcccCCCEEEEEecCcccCChhHHHHHHhcCCCEEEEecCCCCceeeec
Confidence 2468888766 56999999999998875432211
Q ss_pred -------------------------------------------------------------CCCccCCeEEEEEeEecCC
Q 045912 135 -------------------------------------------------------------AADVISPRAEFGGTLRSLT 153 (218)
Q Consensus 135 -------------------------------------------------------------~~NvIPd~a~~~~diR~~~ 153 (218)
..|+||++|++.+|+|+.+
T Consensus 153 ~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~i~gg~~~nviP~~~~~~~diR~~~ 232 (347)
T PRK08652 153 YGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALGKYFDPHIGIQEIIGGSPEYSIPALCRLRLDARIPP 232 (347)
T ss_pred ccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhhcccCCCCcceeeecCCCCCccCCcEEEEEEEEcCC
Confidence 5699999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCCC
Q 045912 154 TEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 154 ~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
.+..+++.++|++++++ .++++++.. .....++.+++++++.++++++++ |.+
T Consensus 233 ~~~~~~v~~~i~~~~~~----~~v~~~~~~----~~~~~~~~~~~~lv~~l~~a~~~~-g~~ 285 (347)
T PRK08652 233 EVEVEDVLDEIDPILDE----YTVKYEYTE----IWDGFELDEDEEIVQLLEKAMKEV-GLE 285 (347)
T ss_pred CCCHHHHHHHHHHHHHh----cCceEEEec----cCCcccCCCCCHHHHHHHHHHHHh-CCC
Confidence 99999999999988853 455555443 222223456789999999999886 654
No 29
>PRK09104 hypothetical protein; Validated
Probab=99.93 E-value=3e-24 Score=187.68 Aligned_cols=121 Identities=13% Similarity=0.174 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHhcCCceee--cCCCceEEEEecC--CCCcE
Q 045912 10 ADQILIETERDKNWLISIRRQIHENPELRFEV------HNTNALIRSELDKLGITYSC--PLVKTGIVAKIGS--GSHPF 79 (218)
Q Consensus 10 ~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E------~~~a~~i~~~L~~~G~~~~~--~~~~~~via~~~~--~~~~~ 79 (218)
..++.++++.+++++++++++|++|||++++| .++++||.++|+++||+++. ..+++||+|++++ ..+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~~~ 84 (464)
T PRK09104 5 LDPVLDHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDAPH 84 (464)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCCCE
Confidence 45689999999999999999999999999764 68899999999999999765 2356799999964 23589
Q ss_pred EEEEeeCCCCCcc---ccCCCCccccC-CC-----cccccCC---cHHHHHHHHHHHHHHhhc
Q 045912 80 IALRADMDALPLQ---ELVNWEHKSKI-DG-----KMHACGH---DAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 80 i~~~~h~D~vp~~---~~~~~pf~~~~-~g-----~~~~~G~---d~~~a~ll~aa~~L~~~~ 130 (218)
|+|.|||||||++ .|+.+||.... +| ++||+|. +|++|+++.|++.|++..
T Consensus 85 lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~ 147 (464)
T PRK09104 85 VLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVT 147 (464)
T ss_pred EEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhc
Confidence 9999999999975 37889999764 33 5899885 599999999999998754
No 30
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.93 E-value=8.7e-25 Score=186.05 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=80.2
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHhcCCc-eeecCCCceEEEEecCCCCcEEEEEeeCCCCCccc-----cCCCCc-
Q 045912 27 IRRQIHENPELRFEVHNTNALIRSELDKLGIT-YSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQE-----LVNWEH- 99 (218)
Q Consensus 27 ~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~-~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~-----~~~~pf- 99 (218)
++++|++|||++++|.++++||.++|+++|++ ++....+.||+|+++++++|+|+|+|||||||.++ |+.+||
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~ 80 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDS 80 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccc
Confidence 47899999999999999999999999999654 22211245999998654468999999999999753 554443
Q ss_pred -------cc-cCCCcccccCC-c--HHHHHHHHHHHHHH
Q 045912 100 -------KS-KIDGKMHACGH-D--APTTMLLGEAKLLH 127 (218)
Q Consensus 100 -------~~-~~~g~~~~~G~-d--~~~a~ll~aa~~L~ 127 (218)
.. ..+|++||||+ | |++|++|.|++.|.
T Consensus 81 ~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~ 119 (373)
T TIGR01900 81 LIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLD 119 (373)
T ss_pred ccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHh
Confidence 33 35799999998 5 89999999998884
No 31
>PRK07473 carboxypeptidase; Provisional
Probab=99.93 E-value=6e-24 Score=181.08 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCChH---HHHHHHHHHHHhcCCceeecC---C-CceEEEEecC--CCCcEEEEEeeCCCCC
Q 045912 20 DKNWLISIRRQIHENPELRFEVH---NTNALIRSELDKLGITYSCPL---V-KTGIVAKIGS--GSHPFIALRADMDALP 90 (218)
Q Consensus 20 ~~~~~~~~~~~L~~~pe~~~~E~---~~a~~i~~~L~~~G~~~~~~~---~-~~~via~~~~--~~~~~i~~~~h~D~vp 90 (218)
..+++++++++|++|||++++|. +.++||.++|+++|++++... + ..|+++++++ +.+|+|+|+|||||||
T Consensus 9 ~~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~ 88 (376)
T PRK07473 9 DSEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVH 88 (376)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCC
Confidence 36788999999999999999986 667799999999999987632 2 2479999963 2358999999999996
Q ss_pred -ccccCCCCccccCCCcccccC---CcHHHHHHHHHHHHHHhhcccC--C------------------------------
Q 045912 91 -LQELVNWEHKSKIDGKMHACG---HDAPTTMLLGEAKLLHRRKDQL--N------------------------------ 134 (218)
Q Consensus 91 -~~~~~~~pf~~~~~g~~~~~G---~d~~~a~ll~aa~~L~~~~~~~--~------------------------------ 134 (218)
.++++.+||. .++|++|||| |||++|++|.|++.|++.+..+ .
T Consensus 89 ~~~~~~~~p~~-~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~~~d~~ 167 (376)
T PRK07473 89 PVGTLEKLPWR-REGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAARNKYV 167 (376)
T ss_pred CCCCccCCCeE-EECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhccCCEE
Confidence 4556778996 4579999999 6799999999999998754321 1
Q ss_pred -------------------------------------------------------------------------CCCccCC
Q 045912 135 -------------------------------------------------------------------------AADVISP 141 (218)
Q Consensus 135 -------------------------------------------------------------------------~~NvIPd 141 (218)
+.|+||+
T Consensus 168 iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~vg~i~gg~~~n~VP~ 247 (376)
T PRK07473 168 LVPEPGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTTEDCTFSVGIVHGGQWVNCVAT 247 (376)
T ss_pred EEeCCCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcCCCceEeEeeEEcCCCCcCCCC
Confidence 5799999
Q ss_pred eEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccC---CHHHHHHHHHHHHhhcCC
Q 045912 142 RAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALD---NDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 142 ~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~---d~~l~~~l~~~~~~~~G~ 214 (218)
+|++.+|.|..+.+.++++.+++.+.++ ...+++++++. ....|++.. ++.+++.++++++. +|.
T Consensus 248 ~~~~~~d~r~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~ 315 (376)
T PRK07473 248 TCTGEALSMAKRQADLDRGVARMLALSG---TEDDVTFTVTR----GVTRPVWEPDAGTMALYEKARAIAGQ-LGL 315 (376)
T ss_pred ceEEEEEEEeCCHhHHHHHHHHHHHhhC---cCCCeEEEEEc----cccCCCCCCChhHHHHHHHHHHHHHH-cCC
Confidence 9999999999998888888777766654 22455555543 234555433 24688888777654 454
No 32
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.93 E-value=9e-24 Score=181.92 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=161.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHhcCCceeec-CC----CceEEEEecCCCC-cEEEEEee
Q 045912 13 ILIETERDKNWLISIRRQIHENPELR-FEVHNTNALIRSELDKLGITYSCP-LV----KTGIVAKIGSGSH-PFIALRAD 85 (218)
Q Consensus 13 i~~~i~~~~~~~~~~~~~L~~~pe~~-~~E~~~a~~i~~~L~~~G~~~~~~-~~----~~~via~~~~~~~-~~i~~~~h 85 (218)
..........++++++++|+++||++ ..+.+.+++|.++|+++|+.+... .+ ..|++++++++.+ |+|+|.||
T Consensus 4 ~~~~~~~~~~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~H 83 (409)
T COG0624 4 LLEVSLDLLDDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGGH 83 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEecc
Confidence 34555567778889999999999999 899999999999999999987653 22 4599999976544 89999999
Q ss_pred CCCCCccc---cCCCCccccC-CCcccccCC---cHHHHHHHHHHHHHHhhcccCC------------------------
Q 045912 86 MDALPLQE---LVNWEHKSKI-DGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN------------------------ 134 (218)
Q Consensus 86 ~D~vp~~~---~~~~pf~~~~-~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~------------------------ 134 (218)
|||||.++ |+.+||.... +|++||+|. +|++++++.|++.+.+.+..++
T Consensus 84 ~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~ 163 (409)
T COG0624 84 LDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEE 163 (409)
T ss_pred ccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHh
Confidence 99999864 7778999874 689999985 4999999999999987432221
Q ss_pred --------------------------------------------------------------------------------
Q 045912 135 -------------------------------------------------------------------------------- 134 (218)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (218)
T Consensus 164 ~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~ 243 (409)
T COG0624 164 GEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGE 243 (409)
T ss_pred cchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccc
Confidence
Q ss_pred -----------------C--------CCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccC
Q 045912 135 -----------------A--------ADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFP 189 (218)
Q Consensus 135 -----------------~--------~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~ 189 (218)
. .|+||++|++.+|+|..+.+..+++.+++++.++..+...++++++.... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~--~~ 321 (409)
T COG0624 244 GFDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEIEPGL--GE 321 (409)
T ss_pred cccCCccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEecccc--CC
Confidence 2 49999999999999999999999999999999887765456666665300 22
Q ss_pred CCCcccCCHHHHHHHHHHHHhhcCCC
Q 045912 190 LIPAALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 190 ~~p~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
...++..++++++.+.+++++.+|.+
T Consensus 322 ~~~~~~~~~~~v~~l~~~~~~~~g~~ 347 (409)
T COG0624 322 PPLPVPGDSPLVAALAEAAEELLGLP 347 (409)
T ss_pred ccccCCCchHHHHHHHHHHHHhhCCC
Confidence 33455678899999999998877764
No 33
>PRK06446 hypothetical protein; Provisional
Probab=99.92 E-value=8.8e-24 Score=183.36 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhCCCCCCC-h--HHHHHHHHHHHHhcCCceeec--CCCceEEEEecCCCCcEEEEEeeCCCCCcc---c
Q 045912 22 NWLISIRRQIHENPELRFE-V--HNTNALIRSELDKLGITYSCP--LVKTGIVAKIGSGSHPFIALRADMDALPLQ---E 93 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~-E--~~~a~~i~~~L~~~G~~~~~~--~~~~~via~~~~~~~~~i~~~~h~D~vp~~---~ 93 (218)
.++++++++|++|||++++ | .++++||.++|+++||+++.. .+++|++|+++++.+|+|+|.|||||||++ .
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 4678999999999999865 3 799999999999999998653 257899999965446899999999999974 4
Q ss_pred cCCCCccccC-CCcccccCC---cHHHHHHHHHHHHHHh
Q 045912 94 LVNWEHKSKI-DGKMHACGH---DAPTTMLLGEAKLLHR 128 (218)
Q Consensus 94 ~~~~pf~~~~-~g~~~~~G~---d~~~a~ll~aa~~L~~ 128 (218)
|+.+||+..+ +|++||+|. +|++|++|.|++.+.+
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~ 120 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLID 120 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHH
Confidence 7889998764 899999885 5999999989887764
No 34
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.92 E-value=9.6e-24 Score=181.76 Aligned_cols=189 Identities=12% Similarity=0.068 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhCCCCCC----------ChHHHHHHHHHHHHhcCCc-eeecCCCceEEEEecCCCC---cEEEEEeeCC
Q 045912 22 NWLISIRRQIHENPELRF----------EVHNTNALIRSELDKLGIT-YSCPLVKTGIVAKIGSGSH---PFIALRADMD 87 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~----------~E~~~a~~i~~~L~~~G~~-~~~~~~~~~via~~~~~~~---~~i~~~~h~D 87 (218)
+.+++.+.++++|+|.|+ .|.+.|++|+++|+++|++ ++.+....||+|.+++..+ |+|+|.||||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 568888999999999997 5668999999999999997 7776435799999954323 9999999999
Q ss_pred CCCcccc----------------------------CCCCccc--------cCCCcccccCCcHHHHHHHHHHHHHHhhcc
Q 045912 88 ALPLQEL----------------------------VNWEHKS--------KIDGKMHACGHDAPTTMLLGEAKLLHRRKD 131 (218)
Q Consensus 88 ~vp~~~~----------------------------~~~pf~~--------~~~g~~~~~G~d~~~a~ll~aa~~L~~~~~ 131 (218)
|||.... ...||.. ..++.++||++++++|++|.|++.|++...
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 9984221 1334542 124588999999999999999999987521
Q ss_pred cCC-----------------------------------------------------------------------------
Q 045912 132 QLN----------------------------------------------------------------------------- 134 (218)
Q Consensus 132 ~~~----------------------------------------------------------------------------- 134 (218)
.+.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~~~~~~~~i~gep~g~i~~~~~g~~~~~I~v~Gk~aHa~~~~~~g~nAi~~a~ 242 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDFNADFAYTVDGGPLGELEYETFSAAAAKITIQGNNVHPGTAKGKMINAAQIAI 242 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhcCccEEEEeCCCCCCeEEEccccceEEEEEEEEEecCcccChHHHHHHHHHHH
Confidence 111
Q ss_pred -------------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCC-eEEEEeeeccc
Q 045912 135 -------------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRC-NAYVDFQVEEF 188 (218)
Q Consensus 135 -------------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~-~~~i~~~~~~~ 188 (218)
..|.||++|++.+|+|+.+.+..+++.++|++++++++..+++ .+++++ .
T Consensus 243 ~~~~~l~~~~~~~~t~~~~g~i~~g~i~giPd~a~l~~diR~~~~e~~e~i~~~i~~i~~~~~~~~g~~~v~~~~----~ 318 (410)
T TIGR01882 243 DLHNLLPEDDRPEYTEGREGFFHLLSIDGTVEEAKLHYIIRDFEKENFQERKELMKRIVEKMNNEYGQDRIKLDM----N 318 (410)
T ss_pred HHHHhcCCcCCCccccceeEEEEEEeEEEecCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEE----E
Confidence 3477899999999999999999999999999999998877774 456665 2
Q ss_pred CCCC----cccCCHHHHHHHHHHHHhhcCCC
Q 045912 189 PLIP----AALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 189 ~~~p----~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
..++ .+.+++++++.+++++++ +|.+
T Consensus 319 ~~~~~~~~~~~~~~~lv~~~~~a~~~-~G~~ 348 (410)
T TIGR01882 319 DQYYNMAEKIEKVMEIVDIAKQAMEN-LGIE 348 (410)
T ss_pred eeecChhhccCCCHHHHHHHHHHHHH-hCCC
Confidence 2232 356789999999999886 4643
No 35
>PRK09133 hypothetical protein; Provisional
Probab=99.92 E-value=1.4e-23 Score=183.84 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=93.7
Q ss_pred HhHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHhcCCcee---ec---CCCceEEEEecC-CCCcEEEEEeeCCCC
Q 045912 19 RDKNWLISIRRQIHENPELR--FEVHNTNALIRSELDKLGITYS---CP---LVKTGIVAKIGS-GSHPFIALRADMDAL 89 (218)
Q Consensus 19 ~~~~~~~~~~~~L~~~pe~~--~~E~~~a~~i~~~L~~~G~~~~---~~---~~~~~via~~~~-~~~~~i~~~~h~D~v 89 (218)
.+++++++++++|++|||++ ++|.++++||.++|+++||+++ .. .++.||++++++ +++|+|+|.||||||
T Consensus 34 ~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtV 113 (472)
T PRK09133 34 ADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVV 113 (472)
T ss_pred hhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccC
Confidence 35778999999999999997 6789999999999999999753 22 246899999954 345899999999999
Q ss_pred Ccc--ccCCCCccccC-CCcccccCC-c--HHHHHHHHHHHHHHhhc
Q 045912 90 PLQ--ELVNWEHKSKI-DGKMHACGH-D--APTTMLLGEAKLLHRRK 130 (218)
Q Consensus 90 p~~--~~~~~pf~~~~-~g~~~~~G~-d--~~~a~ll~aa~~L~~~~ 130 (218)
|.+ +|+.+||...+ +|++||||. | |++|++|.+++.|++.+
T Consensus 114 p~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~ 160 (472)
T PRK09133 114 EAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREG 160 (472)
T ss_pred CCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcC
Confidence 975 47889999864 789999997 4 99999999998887543
No 36
>PRK05469 peptidase T; Provisional
Probab=99.92 E-value=1.9e-23 Score=179.90 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHhcCCc-eeecCCCceEEEEecCC---CCcEEEEEeeCC
Q 045912 22 NWLISIRRQIHENPELRFE----------VHNTNALIRSELDKLGIT-YSCPLVKTGIVAKIGSG---SHPFIALRADMD 87 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~----------E~~~a~~i~~~L~~~G~~-~~~~~~~~~via~~~~~---~~~~i~~~~h~D 87 (218)
+++++.+++|++|||.|.+ |.++++||.++|+++|++ ++.+ ...||+|.++++ ++|+|+|+||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~-~~~~v~~~~~g~~~~~~~~i~l~~H~D 80 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLD-ENGYVMATLPANVDKDVPTIGFIAHMD 80 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEC-CCeEEEEEecCCCCCCCCeEEEEEecc
Confidence 4678999999999999977 899999999999999997 5543 346799999542 259999999999
Q ss_pred CCCcccc---------------------CCCCccccCCCccc---------------ccCCcHHHHHHHHHHHHHHhhcc
Q 045912 88 ALPLQEL---------------------VNWEHKSKIDGKMH---------------ACGHDAPTTMLLGEAKLLHRRKD 131 (218)
Q Consensus 88 ~vp~~~~---------------------~~~pf~~~~~g~~~---------------~~G~d~~~a~ll~aa~~L~~~~~ 131 (218)
|||+.+. +.++|.+...+.+| ||++++++|+++.|++.|++.+.
T Consensus 81 ~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~ 160 (408)
T PRK05469 81 TAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE 160 (408)
T ss_pred CCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC
Confidence 9986431 12333333333333 25556889999999999987543
Q ss_pred cCC-----------------------------------------------------------------------------
Q 045912 132 QLN----------------------------------------------------------------------------- 134 (218)
Q Consensus 132 ~~~----------------------------------------------------------------------------- 134 (218)
.++
T Consensus 161 ~~~g~v~~~f~~dEE~g~Ga~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~Ha~~~p~~g~nAi~~~~ 240 (408)
T PRK05469 161 IKHGDIRVAFTPDEEIGRGADKFDVEKFGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVHPGTAKGKMVNALLLAA 240 (408)
T ss_pred CCCCCEEEEEecccccCCCHHHhhhhhcCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCCCCCCcccccCHHHHHH
Confidence 221
Q ss_pred -------------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeeeccc
Q 045912 135 -------------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVH-RCNAYVDFQVEEF 188 (218)
Q Consensus 135 -------------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~-g~~~~i~~~~~~~ 188 (218)
..|..|++|++.+|+|+.+.+..+.+.++|++++++++..+ ++++++++ .
T Consensus 241 ~~i~~l~~~~~~~~~~~~~~~i~~g~i~ggp~~~~i~~diR~~~~e~~e~i~~~i~~~~~~~~~~~~~~~~~~~~----~ 316 (408)
T PRK05469 241 DFHAMLPADETPETTEGYEGFYHLTSIKGTVEEAELSYIIRDFDREGFEARKALMQEIAKKVNAKYGEGRVELEI----K 316 (408)
T ss_pred HHHHhCCCCCCCCCCCCceEEEEEEEEEEccceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE----e
Confidence 12456999999999999999999999999999999998777 57777776 3
Q ss_pred CCC----CcccCCHHHHHHHHHHHHhhcCC
Q 045912 189 PLI----PAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 189 ~~~----p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
..+ +++.+++++++.+++++++ .|.
T Consensus 317 ~~~~~~~~~~~~~~~lv~~~~~a~~~-~g~ 345 (408)
T PRK05469 317 DQYYNMREKIEPHPHIVDLAKQAMED-LGI 345 (408)
T ss_pred ehhhhhhhhhcCCHHHHHHHHHHHHH-cCC
Confidence 222 2467889999999999987 354
No 37
>PRK08262 hypothetical protein; Provisional
Probab=99.91 E-value=8.3e-24 Score=185.84 Aligned_cols=112 Identities=12% Similarity=0.069 Sum_probs=90.7
Q ss_pred HhHHHHHHHHHHHHhCCCCCCChH---------HHHHHHHHHHHhcCCceee-cCCCceEEEEecC-CCC-cEEEEEeeC
Q 045912 19 RDKNWLISIRRQIHENPELRFEVH---------NTNALIRSELDKLGITYSC-PLVKTGIVAKIGS-GSH-PFIALRADM 86 (218)
Q Consensus 19 ~~~~~~~~~~~~L~~~pe~~~~E~---------~~a~~i~~~L~~~G~~~~~-~~~~~~via~~~~-~~~-~~i~~~~h~ 86 (218)
...+++++++++|++|||++++|. ++++||.++|+.+|++++. ..++.|+++.+.+ +++ |+|+|+|||
T Consensus 41 ~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~ 120 (486)
T PRK08262 41 VDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQ 120 (486)
T ss_pred CCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECcc
Confidence 457789999999999999998763 4788888888888987654 2234688888843 333 899999999
Q ss_pred CCCCccc-----cCCCCcccc-CCCcccccC---CcHHHHHHHHHHHHHHhhc
Q 045912 87 DALPLQE-----LVNWEHKSK-IDGKMHACG---HDAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 87 D~vp~~~-----~~~~pf~~~-~~g~~~~~G---~d~~~a~ll~aa~~L~~~~ 130 (218)
||||.++ |+.+||.+. .+|++|||| |||++|++|.|++.|++.+
T Consensus 121 DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~ 173 (486)
T PRK08262 121 DVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQG 173 (486)
T ss_pred cccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcC
Confidence 9999753 566899986 479999999 5799999999999987654
No 38
>PRK07079 hypothetical protein; Provisional
Probab=99.91 E-value=8.1e-23 Score=178.86 Aligned_cols=116 Identities=9% Similarity=-0.033 Sum_probs=90.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHH----HHHHhcCCceeec-----CCCceEEEEecCC-CC
Q 045912 11 DQILIETERDKNWLISIRRQIHENPELRFE---VHNTNALIR----SELDKLGITYSCP-----LVKTGIVAKIGSG-SH 77 (218)
Q Consensus 11 ~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~---E~~~a~~i~----~~L~~~G~~~~~~-----~~~~~via~~~~~-~~ 77 (218)
.++.+++++ .++++++++|++|||++++ +.++++|++ ++|+++||+++.. .+++||+++++++ ++
T Consensus 8 ~~~~~~~~~--~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~~~ 85 (469)
T PRK07079 8 ARAAAYFDS--GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIEDDAL 85 (469)
T ss_pred HHHHHhhcc--HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCCCCC
Confidence 344444443 4799999999999999874 456777775 4899999998752 2467999998543 45
Q ss_pred cEEEEEeeCCCCCccc--cC--CCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHh
Q 045912 78 PFIALRADMDALPLQE--LV--NWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHR 128 (218)
Q Consensus 78 ~~i~~~~h~D~vp~~~--~~--~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~ 128 (218)
|+|+|.|||||||.++ |+ .+||... .+|++||+|. ||++|+++.|++.|.+
T Consensus 86 ~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~ 144 (469)
T PRK07079 86 PTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLA 144 (469)
T ss_pred CEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHH
Confidence 8999999999999753 66 3999976 4789999885 5999999999888754
No 39
>PRK07205 hypothetical protein; Provisional
Probab=99.90 E-value=3.5e-22 Score=173.79 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=90.0
Q ss_pred HHhHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCC
Q 045912 18 ERDKNWLISIRRQIHENPELRFEV----------HNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMD 87 (218)
Q Consensus 18 ~~~~~~~~~~~~~L~~~pe~~~~E----------~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D 87 (218)
+++++++++++++|++|||++++| .+.++++.++|+++||+++......+++++++.+ +|+|+|.||||
T Consensus 7 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~-~~~lll~gH~D 85 (444)
T PRK07205 7 EKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIGQG-EELLAILCHLD 85 (444)
T ss_pred HHhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEecCC-CcEEEEEEeec
Confidence 457788999999999999998765 5678899999999999986643334667777543 48999999999
Q ss_pred CCCcc---ccCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHh
Q 045912 88 ALPLQ---ELVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHR 128 (218)
Q Consensus 88 ~vp~~---~~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~ 128 (218)
|||++ +|+.+||... .+|++||+|. ||++|++|.|++.|.+
T Consensus 86 vVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~ 133 (444)
T PRK07205 86 VVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLD 133 (444)
T ss_pred cCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH
Confidence 99985 4788999976 4789999885 5999999999888763
No 40
>PRK07906 hypothetical protein; Provisional
Probab=99.90 E-value=1.7e-22 Score=174.92 Aligned_cols=106 Identities=13% Similarity=0.253 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCCCC------CChHHHHHHHHHHHHhcCCceeec---CCCceEEEEecC-CC-CcEEEEEeeCCCCCcc-
Q 045912 25 ISIRRQIHENPELR------FEVHNTNALIRSELDKLGITYSCP---LVKTGIVAKIGS-GS-HPFIALRADMDALPLQ- 92 (218)
Q Consensus 25 ~~~~~~L~~~pe~~------~~E~~~a~~i~~~L~~~G~~~~~~---~~~~~via~~~~-~~-~~~i~~~~h~D~vp~~- 92 (218)
++++++|++|||++ .+|.++++||.++|+++||+++.. .++.|++|++++ .+ .|+|+|.|||||||.+
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 68999999999998 689999999999999999998753 246799999954 22 4789999999999975
Q ss_pred -ccCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhc
Q 045912 93 -ELVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 93 -~~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~ 130 (218)
+|+.+||... .+|++||||. ++++|++|.|++.|++.+
T Consensus 82 ~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~ 124 (426)
T PRK07906 82 ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTG 124 (426)
T ss_pred ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC
Confidence 4788999976 4789999995 599999999999987654
No 41
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.90 E-value=2.6e-22 Score=169.31 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=134.5
Q ss_pred HhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCccccCCCC
Q 045912 19 RDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQELVNWE 98 (218)
Q Consensus 19 ~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~~~~~p 98 (218)
+..+++++++++|++|||++++|.+.++||.++|+++||++++.. ..|++. . + +|.|+|+|||||||..
T Consensus 7 ~~~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~-~~~~~~--~-g-~~~lll~gH~DtVp~~------ 75 (346)
T PRK00466 7 LVKQKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILP-DSNSFI--L-G-EGDILLASHVDTVPGY------ 75 (346)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEec-CCCcEe--c-C-CCeEEEEeccccCCCC------
Confidence 344688999999999999999999999999999999999987643 346553 2 2 3789999999999941
Q ss_pred cccc-CCCcccccCC---cHHHHHHHHHHHHHHhhcccCC----------------------------------------
Q 045912 99 HKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN---------------------------------------- 134 (218)
Q Consensus 99 f~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~---------------------------------------- 134 (218)
|... .+|++||+|. +|++|+++.|++.|.+.+..+.
T Consensus 76 ~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~d~~i~~ep~~~~~i~~ 155 (346)
T PRK00466 76 IEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKGIKVMVSGLADEESTSIGAKELVSKGFNFKHIIVGEPSNGTDIVV 155 (346)
T ss_pred CCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCEEEEEEcCcccCCccHHHHHhcCCCCCEEEEcCCCCCCceEE
Confidence 3332 4789999885 5999999999999876542211
Q ss_pred ----------------------------------------------------------CCCccCCeEEEEEeEecCChHH
Q 045912 135 ----------------------------------------------------------AADVISPRAEFGGTLRSLTTEG 156 (218)
Q Consensus 135 ----------------------------------------------------------~~NvIPd~a~~~~diR~~~~e~ 156 (218)
..|+||++|++.+|+|+.+.+.
T Consensus 156 ~~kG~~~~~i~v~G~~~Has~p~~nAi~~~~~~l~~l~~~~~~~~~~t~~~~~i~gG~~~NvvP~~a~~~~diR~~p~~~ 235 (346)
T PRK00466 156 EYRGSIQLDIMCEGTPEHSSSAKSNLIVDISKKIIEVYKQPENYDKPSIVPTIIRAGESYNVTPAKLYLHFDVRYAINNK 235 (346)
T ss_pred EeeEEEEEEEEEEeeccccCCCCcCHHHHHHHHHHHHHhccccCCCCcceeeEEecCCcCcccCCceEEEEEEEeCCCCC
Confidence 6799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCccc--CCHHHHHHHHHHHHhhcCCC
Q 045912 157 MYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAAL--DNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 157 ~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~--~d~~l~~~l~~~~~~~~G~~ 215 (218)
.+++.++|++.++. ++ ++. ...++++. .++++++.+.+++++. |.+
T Consensus 236 ~~~v~~~i~~~~~~------~~--~~~----~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~ 283 (346)
T PRK00466 236 RDDLISEIKDKFQE------CG--LKI----VDETPPVKVSINNPVVKALMRALLKQ-NIK 283 (346)
T ss_pred HHHHHHHHHHHHhh------Cc--Eee----ccCCCCcccCCCCHHHHHHHHHHHHh-CCC
Confidence 99999999888764 33 333 23345443 4579999999988773 543
No 42
>PRK13381 peptidase T; Provisional
Probab=99.90 E-value=4.6e-22 Score=171.07 Aligned_cols=189 Identities=14% Similarity=0.061 Sum_probs=140.3
Q ss_pred HHHHHHHHHHhCCCCCC----------ChHHHHHHHHHHHHhcCCceeecCCCceEEEEecC-CCC-cEEEEEeeCCCCC
Q 045912 23 WLISIRRQIHENPELRF----------EVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGS-GSH-PFIALRADMDALP 90 (218)
Q Consensus 23 ~~~~~~~~L~~~pe~~~----------~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~-~~~-~~i~~~~h~D~vp 90 (218)
++++.+++|++|||.++ .|.++++||.++|+++|++.....+..||+|++++ +++ |+|+|+|||||||
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp 81 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVD 81 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCC
Confidence 46788999999999997 47899999999999999964433467899999964 344 8999999999999
Q ss_pred cccc----------CCCCccc-------------------cCCCcccccC-------CcHHHHHHHHHHHHHHhhccc--
Q 045912 91 LQEL----------VNWEHKS-------------------KIDGKMHACG-------HDAPTTMLLGEAKLLHRRKDQ-- 132 (218)
Q Consensus 91 ~~~~----------~~~pf~~-------------------~~~g~~~~~G-------~d~~~a~ll~aa~~L~~~~~~-- 132 (218)
.++. +..||.. ..+|++||+| ++|++|++|.|++.|.+.+..
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~~~~g 161 (404)
T PRK13381 82 VGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENEVEHG 161 (404)
T ss_pred ccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcCCCCC
Confidence 7652 2222211 1245678755 459999999999999764211
Q ss_pred -CC-----------------------------------------------------------------------------
Q 045912 133 -LN----------------------------------------------------------------------------- 134 (218)
Q Consensus 133 -~~----------------------------------------------------------------------------- 134 (218)
+.
T Consensus 162 ~i~~~~~~dEE~g~~G~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aHa~~~p~~g~NAI~~a~~~i 241 (404)
T PRK13381 162 DIVVAFVPDEEIGLRGAKALDLARFPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAHPMSAKGVLVNPILMANDFI 241 (404)
T ss_pred CEEEEEEcccccccccHHHHHHhcCCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecCCCCCcccCcCHHHHHHHHH
Confidence 10
Q ss_pred ----------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeeecccCCC
Q 045912 135 ----------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHR-CNAYVDFQVEEFPLI 191 (218)
Q Consensus 135 ----------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g-~~~~i~~~~~~~~~~ 191 (218)
..+..|++|++.+|+|+.+.+..+++.++|++++++++...+ +++++++.. ....
T Consensus 242 ~~l~~~~~~~~~~~~~~~i~v~~i~g~p~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~ 319 (404)
T PRK13381 242 SHFPRQETPEHTEGREGYIWVNDLQGNVNKAKLKLIIRDFDLDGFEARKQFIEEVVAKINAKYPTARVSLTLTD--QYSN 319 (404)
T ss_pred HhCCccCCCCCCCCcccEEEEEeEEeCcceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEEEe--CCch
Confidence 011139999999999999999999999999999999887776 667766411 1111
Q ss_pred C--cccCCHHHHHHHHHHHHhhcCC
Q 045912 192 P--AALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 192 p--~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+ .+.+++++++.+++++++ .|.
T Consensus 320 ~~~~~~~~~~lv~~l~~a~~~-~g~ 343 (404)
T PRK13381 320 ISNSIKDDRRAVDLAFDAMKE-LGI 343 (404)
T ss_pred hhcccccCHHHHHHHHHHHHH-cCC
Confidence 2 356689999999998876 354
No 43
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.90 E-value=3.6e-22 Score=168.55 Aligned_cols=174 Identities=16% Similarity=0.132 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCccccCCCCcc
Q 045912 21 KNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQELVNWEHK 100 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~~~~~pf~ 100 (218)
.+++++++++|++|||++++|.+.++||.++|+++||+++... ..|++|+++++ +|+|+|.|||||||. ..||.
T Consensus 5 ~~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~i~~~~~~-~~~l~~~~H~DtVp~----~~p~~ 78 (348)
T PRK04443 5 ALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDE-AGNARGPAGDG-PPLVLLLGHIDTVPG----DIPVR 78 (348)
T ss_pred hHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEcC-CCcEEEEcCCC-CCEEEEEeeccccCC----CCCcE
Confidence 4678999999999999999999999999999999999987643 36899998543 489999999999994 34774
Q ss_pred ccCCCcccccCC---cHHHHHHHHHHHHHHhhcccCC-------------------------------------------
Q 045912 101 SKIDGKMHACGH---DAPTTMLLGEAKLLHRRKDQLN------------------------------------------- 134 (218)
Q Consensus 101 ~~~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~------------------------------------------- 134 (218)
..+|++||+|. +|++|+++.|++.| .......
T Consensus 79 -~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~~~d~~iv~Ept~~~~i~~~ 156 (348)
T PRK04443 79 -VEDGVLWGRGSVDAKGPLAAFAAAAARL-EALVRARVSFVGAVEEEAPSSGGARLVADRERPDAVIIGEPSGWDGITLG 156 (348)
T ss_pred -eeCCeEEeecccccccHHHHHHHHHHHh-cccCCCCEEEEEEcccccCChhHHHHHHhccCCCEEEEeCCCCccceeee
Confidence 35799999884 59999999999988 3211111
Q ss_pred --------------------------------------------------------------CCCccCCeEEEEEeEecC
Q 045912 135 --------------------------------------------------------------AADVISPRAEFGGTLRSL 152 (218)
Q Consensus 135 --------------------------------------------------------------~~NvIPd~a~~~~diR~~ 152 (218)
..|+||++|++.+|+|..
T Consensus 157 ~kG~~~~~l~~~G~~~Hss~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~n~iP~~~~~~~d~R~~ 236 (348)
T PRK04443 157 YKGRLLVTYVATSESFHSAGPEPNAAEDAIEWWLAVEAWFEANDGRERVFDQVTPKLVDFDSSSDGLTVEAEMTVGLRLP 236 (348)
T ss_pred cccEEEEEEEEEeCCCccCCCCCCHHHHHHHHHHHHHHHHhcCccccccccccceeeeEEecCCCCCCceEEEEEEEccC
Confidence 579999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcc--cCCHHHHHHHHHHHHhhcCC
Q 045912 153 TTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAA--LDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 153 ~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~--~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.+..+++.++|++.+. +.+ +++ ...+||. ..+.++++.++++.++..+.
T Consensus 237 p~~~~~~i~~~i~~~~~------~~~--~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (348)
T PRK04443 237 PGLSPEEAREILDALLP------TGT--VTF----TGAVPAYMVSKRTPLARAFRVAIREAGGT 288 (348)
T ss_pred CCCCHHHHHHHHHHhCC------CcE--EEE----ecCCCceecCCCCHHHHHHHHHHHHhcCC
Confidence 99999999999988863 233 443 2234443 34678999999998886553
No 44
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.89 E-value=6.7e-22 Score=173.36 Aligned_cols=185 Identities=14% Similarity=0.065 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecC--C--CCcEEEEEeeCCCCCcc----
Q 045912 21 KNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGS--G--SHPFIALRADMDALPLQ---- 92 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~--~--~~~~i~~~~h~D~vp~~---- 92 (218)
-+++++++++|++||++|++|.+.++||.++|+++|++++++. ..|+++.+.+ + .+|+|+|.|||||||.+
T Consensus 3 ~~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~ 81 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDE-VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDS 81 (477)
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeC-CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCC
Confidence 3578899999999999999999999999999999999987653 4799999843 2 24899999999999975
Q ss_pred --ccCCCCcccc-CCCcccccCC----c--HHHHHHHHHHHHHHhhcccC------------------------------
Q 045912 93 --ELVNWEHKSK-IDGKMHACGH----D--APTTMLLGEAKLLHRRKDQL------------------------------ 133 (218)
Q Consensus 93 --~~~~~pf~~~-~~g~~~~~G~----d--~~~a~ll~aa~~L~~~~~~~------------------------------ 133 (218)
+|+.+||... .+|++||+|. | +++|+++.+++.-......+
T Consensus 82 ~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~~~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~~~~~~~~ 161 (477)
T TIGR01893 82 LHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILEDNNLKHPPLELLFTVDEETGMDGALGLDENWLSGKILIN 161 (477)
T ss_pred CCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhcCCCCCCCEEEEEEeccccCchhhhhcChhhcCCcEEEE
Confidence 3567899876 4789999885 5 77888777654310000000
Q ss_pred --------------------------------------------C-----------------------------------
Q 045912 134 --------------------------------------------N----------------------------------- 134 (218)
Q Consensus 134 --------------------------------------------~----------------------------------- 134 (218)
.
T Consensus 162 ~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~~~~v~ 241 (477)
T TIGR01893 162 IDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENLNFRLS 241 (477)
T ss_pred ecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcCCeEEE
Confidence 0
Q ss_pred ------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHH--HHhCCeEEEEeeecccCCCCcccCCHHHHHHHHH
Q 045912 135 ------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQA--AVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVER 206 (218)
Q Consensus 135 ------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a--~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~ 206 (218)
+.|+||++|++.+|+|+.+.+.++.+.+.+.+.++..+ ...+++++++. ... +|+..|+.+++.+.+
T Consensus 242 ~~~gg~~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~d~~~~~~i~~ 316 (477)
T TIGR01893 242 DIKGGSKRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSEYSELEPNITIEVSK----REN-SVKVFSENTTDKLIN 316 (477)
T ss_pred EEeCCCcccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEE----CCC-cccccCHHHHHHHHH
Confidence 68999999999999999999999999999999998887 34788888876 455 888999999999999
Q ss_pred HHHhh
Q 045912 207 VGKSL 211 (218)
Q Consensus 207 ~~~~~ 211 (218)
+++.+
T Consensus 317 ~~~~~ 321 (477)
T TIGR01893 317 ALNGL 321 (477)
T ss_pred HHHHC
Confidence 98765
No 45
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.89 E-value=2.2e-21 Score=167.20 Aligned_cols=189 Identities=13% Similarity=0.147 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHhCCC---------CCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecC-CCCcEEEEEeeCCCCC
Q 045912 21 KNWLISIRRQIHENPE---------LRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGS-GSHPFIALRADMDALP 90 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe---------~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~-~~~~~i~~~~h~D~vp 90 (218)
.+++++.+++|.+|++ .+++|.++++||.++|+++||++++. ...|++|++++ +++|+|+|.|||||||
T Consensus 9 ~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nl~a~~~g~~~~~~l~l~gH~DtVp 87 (412)
T PRK12892 9 GQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID-GIGNVFGRLPGPGPGPALLVGSHLDSQN 87 (412)
T ss_pred HHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCeEEEEccccCCC
Confidence 5578899999999976 45678999999999999999998874 45799999965 3458999999999999
Q ss_pred ccccCCC-------------------Ccc--------c-cCC-----Cc-------------------------------
Q 045912 91 LQELVNW-------------------EHK--------S-KID-----GK------------------------------- 106 (218)
Q Consensus 91 ~~~~~~~-------------------pf~--------~-~~~-----g~------------------------------- 106 (218)
.+.+.+. ++. + ++. |.
T Consensus 88 ~~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (412)
T PRK12892 88 LGGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADALAARCRSDGVPLRDAL 167 (412)
T ss_pred CCCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHHhCccCCCCcCHHHHH
Confidence 7543211 100 0 011 00
Q ss_pred ------------------------------------------------------ccc-cCCc------HHHHHHHHHHHH
Q 045912 107 ------------------------------------------------------MHA-CGHD------APTTMLLGEAKL 125 (218)
Q Consensus 107 ------------------------------------------------------~~~-~G~d------~~~a~ll~aa~~ 125 (218)
.+| .+|- .+.-++..+++.
T Consensus 168 ~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~ 247 (412)
T PRK12892 168 AAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEM 247 (412)
T ss_pred HHcCCChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHH
Confidence 000 0121 111223333333
Q ss_pred HHhhcc-------cC-----------CCCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecc
Q 045912 126 LHRRKD-------QL-----------NAADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEE 187 (218)
Q Consensus 126 L~~~~~-------~~-----------~~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~ 187 (218)
+.+... .. .+.|+||++|++.+|+|+.+.+..+++.++|++++++++..+++++++..
T Consensus 248 i~~l~~~~~~~~~~~~~~vg~i~gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~~---- 323 (412)
T PRK12892 248 IAAIDEHFPRVCGPAVVTVGRVALDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVDR---- 323 (412)
T ss_pred HHHHHHHHHhcCCCcEEEEEEEEecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE----
Confidence 332211 00 16799999999999999999999999999999999998878888888876
Q ss_pred cCCCCcccCCHHHHHHHHHHHHhhcCCC
Q 045912 188 FPLIPAALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 188 ~~~~p~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
...++++.+|+++++.+++++++ +|.+
T Consensus 324 ~~~~~~~~~d~~lv~~~~~a~~~-~g~~ 350 (412)
T PRK12892 324 IAEYAPAPCDAALVDALRAAAEA-AGGP 350 (412)
T ss_pred EecCCCcCCCHHHHHHHHHHHHH-cCCC
Confidence 45677888899999999999987 6654
No 46
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.88 E-value=1.2e-21 Score=164.68 Aligned_cols=165 Identities=15% Similarity=0.133 Sum_probs=128.5
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCccccCCCCcccc-CC
Q 045912 26 SIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQELVNWEHKSK-ID 104 (218)
Q Consensus 26 ~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~~~~~pf~~~-~~ 104 (218)
+++++|++|||++++|.++++||+++|+++||++..+ ...|+++..+++ +|+|+|.|||||||. +|... .+
T Consensus 1 ~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~-~~~i~~~~H~D~vp~------~~~~~~~~ 72 (336)
T TIGR01902 1 ELLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLIID-DAGNFILGKGDG-HKKILLAGHVDTVPG------YIPVKIEG 72 (336)
T ss_pred ChHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEEC-CCCcEEEEeCCC-CceEEEEccccccCC------CcccEEeC
Confidence 3689999999999999999999999999999998543 346888876433 599999999999983 23322 47
Q ss_pred CcccccCC---cHHHHHHHHHHHHHHhhcccCC-----------------------------------------------
Q 045912 105 GKMHACGH---DAPTTMLLGEAKLLHRRKDQLN----------------------------------------------- 134 (218)
Q Consensus 105 g~~~~~G~---d~~~a~ll~aa~~L~~~~~~~~----------------------------------------------- 134 (218)
|++||+|. ++++|+++.|++.|++.+..+.
T Consensus 73 g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~~~~~ii~ept~~~~i~~~~kG~~~~ 152 (336)
T TIGR01902 73 GLLYGRGAVDAKGPLIAMIFATWLLNEKGIKVIVSGLVDEESSSKGAREVIDKNYPFYVIVGEPSGAEGITLGYKGSLQL 152 (336)
T ss_pred CEEEEecccCCCcHHHHHHHHHHHHHhCCCcEEEEEEeCcccCCccHHHHHhhcCCCEEEEecCCCCcceeeeeeeEEEE
Confidence 89999874 5999999999988876443211
Q ss_pred ----------------------------------------------------CCCccCCeEEEEEeEecCChHHHHHHHH
Q 045912 135 ----------------------------------------------------AADVISPRAEFGGTLRSLTTEGMYRLQK 162 (218)
Q Consensus 135 ----------------------------------------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~ 162 (218)
+.|+||++|++++|+|+.+.+..+++.+
T Consensus 153 ~v~~~G~~~Hss~~~~ai~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~gg~~~nvIP~~a~~~idiR~~p~~~~~~~~~ 232 (336)
T TIGR01902 153 KIMCEGTPFHSSSAGNAAELLIDYSKKIIEVYKQPENYDKPSIVPTIIRFGESYNDTPAKLELHFDLRYPPNNKPEEAIK 232 (336)
T ss_pred EEEEEecCcccCCChhHHHHHHHHHHHHHHHhccccCCCCCcceeEEEEccCCCcCCCceEEEEEEEeeCCCCCHHHHHH
Confidence 7899999999999999999999988887
Q ss_pred HHHHHHHHHHHHhCCeEEEEeeecccCCCCcc--cCCHHHHHHHHHHHHhh
Q 045912 163 RLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAA--LDNDSLYLLVERVGKSL 211 (218)
Q Consensus 163 ~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~--~~d~~l~~~l~~~~~~~ 211 (218)
+|++ ..+ ++++. ...++|. ..++++++.++++++++
T Consensus 233 ~i~~-------~~~--~~~~~----~~~~~p~~~~~~~~lv~~~~~a~~~~ 270 (336)
T TIGR01902 233 EITD-------KFP--ICLEI----VDETPPYKVSRNNPLVRAFVRAIRKQ 270 (336)
T ss_pred HHHh-------ccC--ceEEE----EeccCceecCCCCHHHHHHHHHHHHc
Confidence 7765 123 34443 2334554 35679999999998875
No 47
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.88 E-value=7e-21 Score=166.51 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=96.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhCCCCCCC------------hHHHHHHHHHHHHhcCCceeecCCCceEEEEec-CCCCc
Q 045912 12 QILIETERDKNWLISIRRQIHENPELRFE------------VHNTNALIRSELDKLGITYSCPLVKTGIVAKIG-SGSHP 78 (218)
Q Consensus 12 ~i~~~i~~~~~~~~~~~~~L~~~pe~~~~------------E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~-~~~~~ 78 (218)
++.++++++++++++++++|++|||++++ |.++++||+++|+++||+++.. .|+++.+. +..+|
T Consensus 4 ~~~~~~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~---~n~~~~~~~~~~~~ 80 (466)
T PRK07318 4 DWKKEVEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNV---DNYAGHIEYGEGEE 80 (466)
T ss_pred hHHHHHHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEe---cCccceEEECCCCC
Confidence 46788999999999999999999999865 5689999999999999998753 36666653 22348
Q ss_pred EEEEEeeCCCCCccc-cCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhc
Q 045912 79 FIALRADMDALPLQE-LVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 79 ~i~~~~h~D~vp~~~-~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~ 130 (218)
+|+|.|||||||.++ |+.+||... .+|++||+|. ||++|+++.|++.|++.+
T Consensus 81 ~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g 137 (466)
T PRK07318 81 VLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELG 137 (466)
T ss_pred EEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcC
Confidence 999999999999864 788999876 4789999884 599999999999998644
No 48
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.87 E-value=1.6e-20 Score=161.91 Aligned_cols=189 Identities=15% Similarity=0.170 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhCCCC----------CCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecC-C-CCcEEEEEeeCCC
Q 045912 21 KNWLISIRRQIHENPEL----------RFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGS-G-SHPFIALRADMDA 88 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~----------~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~-~-~~~~i~~~~h~D~ 88 (218)
.+++++++++|++||+. +++|.++++||.++|+++||++++. ...|++|++.+ + .+|+|+|+|||||
T Consensus 9 ~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~a~~~g~~~~~~~l~l~~H~Dt 87 (412)
T PRK12893 9 GERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD-AIGNLFGRRAGTDPDAPPVLIGSHLDT 87 (412)
T ss_pred HHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEeCCCCCCCCEEEEEecccC
Confidence 56789999999999964 3458999999999999999998764 34699999954 3 2589999999999
Q ss_pred CCccccC-------------------CCCc--------ccc-CCC----------cc-----------------------
Q 045912 89 LPLQELV-------------------NWEH--------KSK-IDG----------KM----------------------- 107 (218)
Q Consensus 89 vp~~~~~-------------------~~pf--------~~~-~~g----------~~----------------------- 107 (218)
||.+..- ..++ .+. +.| .+
T Consensus 88 Vp~~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (412)
T PRK12893 88 QPTGGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDDALARRDADGITLGEA 167 (412)
T ss_pred CCCCCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHHHHhccCCCCCCHHHH
Confidence 9964310 1110 000 011 00
Q ss_pred ------------------------------------------------------cc-cCCc------HHHHHHHHHHHHH
Q 045912 108 ------------------------------------------------------HA-CGHD------APTTMLLGEAKLL 126 (218)
Q Consensus 108 ------------------------------------------------------~~-~G~d------~~~a~ll~aa~~L 126 (218)
+| .+|- .+.-++..+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i 247 (412)
T PRK12893 168 LARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARII 247 (412)
T ss_pred HHHcCCCcccccccCCccEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHH
Confidence 00 0120 0112222233333
Q ss_pred Hhhcc---c------C---------CCCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccc
Q 045912 127 HRRKD---Q------L---------NAADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEF 188 (218)
Q Consensus 127 ~~~~~---~------~---------~~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~ 188 (218)
.+... . + .+.|+||++|++.+|+|+.+.++.+++.++|+++++..+..++++++++. .
T Consensus 248 ~~l~~~~~~~~~~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~~----~ 323 (412)
T PRK12893 248 LAVERIAAALAPDGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVET----V 323 (412)
T ss_pred HHHHHHHHhcCCCceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE----E
Confidence 22210 0 0 16799999999999999999999999999999999998877888888776 4
Q ss_pred CCCCcccCCHHHHHHHHHHHHhhcCCC
Q 045912 189 PLIPAALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 189 ~~~p~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
..++++.+++++++.+++++++ +|.+
T Consensus 324 ~~~~~~~~d~~l~~~l~~~~~~-~g~~ 349 (412)
T PRK12893 324 WDFPPVPFDPALVALVEAAAEA-LGLS 349 (412)
T ss_pred ecCCCcCCCHHHHHHHHHHHHH-cCCC
Confidence 5677888899999999998876 4643
No 49
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.87 E-value=8.3e-21 Score=161.11 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHHHHhcCCceeec---CCCceEEEEecCCCCcEEEEEeeCCCCCcc
Q 045912 20 DKNWLISIRRQIHENPELR----FEVHNTNALIRSELDKLGITYSCP---LVKTGIVAKIGSGSHPFIALRADMDALPLQ 92 (218)
Q Consensus 20 ~~~~~~~~~~~L~~~pe~~----~~E~~~a~~i~~~L~~~G~~~~~~---~~~~~via~~~~~~~~~i~~~~h~D~vp~~ 92 (218)
..+++++++++|++|||.+ ++|.++++||.++|+ ||+++.. .++.|+++..+ +|+|+|+|||||||.+
T Consensus 4 ~~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~g---~~~lll~gH~DtVp~~ 78 (364)
T PRK08737 4 LLESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVRG---TPKYLFNVHLDTVPDS 78 (364)
T ss_pred cHHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEcC---CCeEEEEeeeCCCCCC
Confidence 4557899999999999984 458999999999997 9987653 24579998643 2789999999999975
Q ss_pred -ccCCCCcccc-CCCcccccCC---cHHHHHHHHHHHH
Q 045912 93 -ELVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKL 125 (218)
Q Consensus 93 -~~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~ 125 (218)
.|+.+||... .+|++||+|. ||++|+++.|+..
T Consensus 79 ~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~ 116 (364)
T PRK08737 79 PHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA 116 (364)
T ss_pred CCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc
Confidence 4778899865 4789999885 5999999887764
No 50
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.87 E-value=3.3e-20 Score=159.99 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhC-C---------CCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCC--CCcEEEEEeeCCC
Q 045912 21 KNWLISIRRQIHEN-P---------ELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSG--SHPFIALRADMDA 88 (218)
Q Consensus 21 ~~~~~~~~~~L~~~-p---------e~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~--~~~~i~~~~h~D~ 88 (218)
++.+++++++|++| + |+|++|.+.++||.++|+++||++++. ...||+|+++++ .+|.|+|.|||||
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~-~~~nl~a~~~g~~~~~~~l~l~gH~Dt 84 (413)
T PRK09290 6 AERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD-AVGNLFGRLEGRDPDAPAVLTGSHLDT 84 (413)
T ss_pred HHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCEEEEecCccC
Confidence 56778888899888 3 778899999999999999999998874 357999999653 3589999999999
Q ss_pred CCccccC-------------------CCCc--------cc-cCC------------------------------------
Q 045912 89 LPLQELV-------------------NWEH--------KS-KID------------------------------------ 104 (218)
Q Consensus 89 vp~~~~~-------------------~~pf--------~~-~~~------------------------------------ 104 (218)
||.+... +.++ .+ ++.
T Consensus 85 Vp~~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (413)
T PRK09290 85 VPNGGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDALALRDADGVSFAEA 164 (413)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHHHhccCCCCCCHHHH
Confidence 9964310 1111 00 011
Q ss_pred -------------------------------------------------C----------c-ccccCC--cHHHHHHHHH
Q 045912 105 -------------------------------------------------G----------K-MHACGH--DAPTTMLLGE 122 (218)
Q Consensus 105 -------------------------------------------------g----------~-~~~~G~--d~~~a~ll~a 122 (218)
| + .|+... ..+.-++..+
T Consensus 165 ~~~~~~~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~ 244 (413)
T PRK09290 165 LAAIGYDGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAA 244 (413)
T ss_pred HHHcCCChhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHH
Confidence 0 0 021100 0111222222
Q ss_pred HHHHHhhcc------c-C-----------CCCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEee
Q 045912 123 AKLLHRRKD------Q-L-----------NAADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQ 184 (218)
Q Consensus 123 a~~L~~~~~------~-~-----------~~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~ 184 (218)
++.+.+... . . .+.|+||++|++.+|+|+.+.++.+++.++|++++++.+...+++++++.
T Consensus 245 ~~~i~~l~~l~~~~~~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~- 323 (413)
T PRK09290 245 AEIILAVERIAAAHGPDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIEL- 323 (413)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE-
Confidence 333322210 0 0 16799999999999999999999999999999999998877788888876
Q ss_pred ecccCCCCcccCCHHHHHHHHHHHHhhcCCC
Q 045912 185 VEEFPLIPAALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 185 ~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
...+|++.+++++++.+++++++. |.+
T Consensus 324 ---~~~~~~~~~d~~lv~~l~~a~~~~-g~~ 350 (413)
T PRK09290 324 ---ISRRPPVPFDPGLVAALEEAAERL-GLS 350 (413)
T ss_pred ---EecCCCccCCHHHHHHHHHHHHHc-CCC
Confidence 456778888999999999998764 643
No 51
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.86 E-value=5.4e-20 Score=158.69 Aligned_cols=76 Identities=14% Similarity=0.065 Sum_probs=67.4
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.|+||++|++.+|+|+.+.+..+++.++|+++++.++..++++++++. ...+||+.+++++++.++++++. +|.
T Consensus 274 ~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~lv~~l~~a~~~-~G~ 348 (414)
T PRK12891 274 SRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIADETGLRADIEQ----IFGYAPAPFAPGCIDAVRDAARA-LGL 348 (414)
T ss_pred CcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE----EecCCCcCCCHHHHHHHHHHHHH-cCC
Confidence 5699999999999999999999999999999999998888888888877 56678888899999999998865 565
Q ss_pred C
Q 045912 215 E 215 (218)
Q Consensus 215 ~ 215 (218)
+
T Consensus 349 ~ 349 (414)
T PRK12891 349 S 349 (414)
T ss_pred C
Confidence 4
No 52
>PRK08554 peptidase; Reviewed
Probab=99.86 E-value=3.2e-20 Score=161.01 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHhcCCceeec--CCCceEEEEecCCCCcEEEEEeeCCCCCcc--
Q 045912 23 WLISIRRQIHENPELRFE------VHNTNALIRSELDKLGITYSCP--LVKTGIVAKIGSGSHPFIALRADMDALPLQ-- 92 (218)
Q Consensus 23 ~~~~~~~~L~~~pe~~~~------E~~~a~~i~~~L~~~G~~~~~~--~~~~~via~~~~~~~~~i~~~~h~D~vp~~-- 92 (218)
++++++++|++|||+++. |.++++|+.++|+++||+++.. .++.|+++.++++ +++|+|.|||||||.+
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~~ 80 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNPE 80 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCcc
Confidence 478899999999997643 5899999999999999997642 2357999998643 3789999999999986
Q ss_pred ccCCCCcccc-CCCcccccC---CcHHHHHHHHHHHHHHhh
Q 045912 93 ELVNWEHKSK-IDGKMHACG---HDAPTTMLLGEAKLLHRR 129 (218)
Q Consensus 93 ~~~~~pf~~~-~~g~~~~~G---~d~~~a~ll~aa~~L~~~ 129 (218)
.|+.+||.+. .+|++||+| |||++|+++.|++.|++.
T Consensus 81 ~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~ 121 (438)
T PRK08554 81 EWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE 121 (438)
T ss_pred ccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc
Confidence 3788999976 478999988 569999999999998753
No 53
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.86 E-value=1.1e-19 Score=156.71 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=67.0
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.|+||++|++.+|+|+.+.++.+.+.++|+++++..+...+++++++. ...++++.+++++++.+.+++++ +|.
T Consensus 276 ~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~-~g~ 350 (414)
T PRK12890 276 AINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELER----LSRSEPVPCDPALVDAVEAAAAR-LGY 350 (414)
T ss_pred CceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE----eecCCCcCCCHHHHHHHHHHHHH-cCC
Confidence 6899999999999999999999999999999999998877788888876 55678888899999999998876 464
Q ss_pred C
Q 045912 215 E 215 (218)
Q Consensus 215 ~ 215 (218)
+
T Consensus 351 ~ 351 (414)
T PRK12890 351 P 351 (414)
T ss_pred C
Confidence 3
No 54
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.85 E-value=1.5e-19 Score=158.00 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=93.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHhCCCCCC------------ChHHHHHHHHHHHHhcCCceeecCCCceEEEEec-CCCCcE
Q 045912 13 ILIETERDKNWLISIRRQIHENPELRF------------EVHNTNALIRSELDKLGITYSCPLVKTGIVAKIG-SGSHPF 79 (218)
Q Consensus 13 i~~~i~~~~~~~~~~~~~L~~~pe~~~------------~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~-~~~~~~ 79 (218)
+.++++++++++++++++|++|||++. ++.+.++++.++|+++||+++.. .|.++.+. ++++|+
T Consensus 4 ~~~~i~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~~~ 80 (466)
T TIGR01886 4 FKEEVEARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNF---DNYAGHVEYGAGDER 80 (466)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEe---cCCceeEEecCCCCE
Confidence 677889999999999999999999964 35778999999999999998753 23444432 223589
Q ss_pred EEEEeeCCCCCccc-cCCCCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhc
Q 045912 80 IALRADMDALPLQE-LVNWEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 80 i~~~~h~D~vp~~~-~~~~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~ 130 (218)
|+|.|||||||.++ |+.+||... .+|++||+|. +|++++++.|++.|++.+
T Consensus 81 l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~ 136 (466)
T TIGR01886 81 LGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELG 136 (466)
T ss_pred EEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhC
Confidence 99999999999864 888999986 4789999885 488999888999887644
No 55
>PRK06156 hypothetical protein; Provisional
Probab=99.84 E-value=3.5e-19 Score=157.58 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=87.3
Q ss_pred HHHhHHHHHHHHHHHHhCCCCCC-----Ch----HHHHHHHHHHHHhcCCceeecCCCceE-E-EEecCCCCcEEEEEee
Q 045912 17 TERDKNWLISIRRQIHENPELRF-----EV----HNTNALIRSELDKLGITYSCPLVKTGI-V-AKIGSGSHPFIALRAD 85 (218)
Q Consensus 17 i~~~~~~~~~~~~~L~~~pe~~~-----~E----~~~a~~i~~~L~~~G~~~~~~~~~~~v-i-a~~~~~~~~~i~~~~h 85 (218)
.+++.+++++++++|++|||++. +| ...++||.++|+++||+++.. .|+ + +.+++..+|+|+|.||
T Consensus 41 ~~~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~---~~~v~~~~~~g~~~~~l~l~gH 117 (520)
T PRK06156 41 RLKYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV---DNRVLEIGLGGSGSDKVGILTH 117 (520)
T ss_pred hhhhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec---CCeEEEEEecCCCCCeEEEEEe
Confidence 34678899999999999999874 33 356799999999999987542 454 4 6665433489999999
Q ss_pred CCCCCcc--ccCC-----CCcccc-CCCcccccCC---cHHHHHHHHHHHHHHhhc
Q 045912 86 MDALPLQ--ELVN-----WEHKSK-IDGKMHACGH---DAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 86 ~D~vp~~--~~~~-----~pf~~~-~~g~~~~~G~---d~~~a~ll~aa~~L~~~~ 130 (218)
|||||.+ +|+. +||... .+|++||+|. |+++++++.|+..|.+.+
T Consensus 118 ~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~ 173 (520)
T PRK06156 118 ADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSG 173 (520)
T ss_pred cCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcC
Confidence 9999975 4666 899986 4789999874 589999988888887543
No 56
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.82 E-value=2e-18 Score=154.58 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=68.5
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.||||++|++++|+|+.+.+..+.+.++|++.+++++..++++++++. ....+++.+|+++++.+.+++++ +|.
T Consensus 451 ~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~----~~~~~~~~~d~~lv~~~~~aa~~-~G~ 525 (591)
T PRK13590 451 SINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEE----TMRAAAAPSAPAWQQRWEAAVAA-LGL 525 (591)
T ss_pred CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE----eecCCCcCCCHHHHHHHHHHHHH-cCC
Confidence 6799999999999999999999999999999999999988999999887 55678889999999999999876 464
Q ss_pred C
Q 045912 215 E 215 (218)
Q Consensus 215 ~ 215 (218)
.
T Consensus 526 ~ 526 (591)
T PRK13590 526 P 526 (591)
T ss_pred C
Confidence 3
No 57
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.82 E-value=1e-18 Score=150.14 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=67.3
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.|+||++|++.+|+|+.+++..+.+.++|+++++..+...+++++++. ...++++.+|+++++.++++++++ |.
T Consensus 267 ~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~lv~~l~~a~~~~-g~ 341 (401)
T TIGR01879 267 GVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIER----WMDEEPVPCSEELVAALTELCERL-GY 341 (401)
T ss_pred ceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEEE----eecCCCcCCCHHHHHHHHHHHHHc-CC
Confidence 5799999999999999999999999999999999998877888888877 556788888999999999998864 54
Q ss_pred C
Q 045912 215 E 215 (218)
Q Consensus 215 ~ 215 (218)
+
T Consensus 342 ~ 342 (401)
T TIGR01879 342 N 342 (401)
T ss_pred C
Confidence 3
No 58
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.82 E-value=3.1e-18 Score=153.29 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=67.6
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.|+||++|++.+|+|+.+.+..+.+.++|++.++.++..+++++++++ ....+++.+|+++++.+++++++ +|.
T Consensus 453 a~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~----~~~~~~~~~d~~lv~~~~~a~~~-~G~ 527 (591)
T PRK13799 453 STNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAEL----AMKAAAAPCAPELMKQLEAATDA-AGV 527 (591)
T ss_pred CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE----EecCCCcCCCHHHHHHHHHHHHH-cCC
Confidence 5799999999999999999999999999999999999988999988887 56678889999999999988875 554
Q ss_pred C
Q 045912 215 E 215 (218)
Q Consensus 215 ~ 215 (218)
.
T Consensus 528 ~ 528 (591)
T PRK13799 528 P 528 (591)
T ss_pred C
Confidence 3
No 59
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.81 E-value=1e-17 Score=144.18 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=65.6
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcC
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLG 213 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G 213 (218)
+.|+||++|++.+|+|+.+.+..+.+.++|++.+++++..++++++++. ....+|+..|+++++.+++++++..+
T Consensus 268 ~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~----~~~~~p~~~d~~lv~~l~~a~~~~~~ 342 (406)
T TIGR03176 268 TVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDL----WMDEAPVPMNKEIVAIIEQLAKAEKL 342 (406)
T ss_pred ceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE----EecCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999999999988899988875 33445667789999999999987544
No 60
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.80 E-value=8.5e-18 Score=147.21 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecC--C--CCcEEEEEeeCCCCCccc---
Q 045912 21 KNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGS--G--SHPFIALRADMDALPLQE--- 93 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~--~--~~~~i~~~~h~D~vp~~~--- 93 (218)
.+++++++++|++||++|++|.+.++||.++|+++|++++++. ..|+++...+ + ..|.|+|.|||||||.++
T Consensus 9 ~~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~-~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~ 87 (485)
T PRK15026 9 PQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQ-VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDT 87 (485)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe-cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCc
Confidence 4678999999999999999999999999999999999987653 4688888632 2 248899999999999753
Q ss_pred ---cCCCCcccc-CCCcccccCC----c--HHHHHHHHHH
Q 045912 94 ---LVNWEHKSK-IDGKMHACGH----D--APTTMLLGEA 123 (218)
Q Consensus 94 ---~~~~pf~~~-~~g~~~~~G~----d--~~~a~ll~aa 123 (218)
|+.+||... .+|++||+|. | +++|++|.++
T Consensus 88 ~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l 127 (485)
T PRK15026 88 VHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL 127 (485)
T ss_pred cccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH
Confidence 557899765 4678987764 4 6777776554
No 61
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.69 E-value=2.1e-15 Score=124.76 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=99.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHhcCCceee-cC------------CCceEEEE
Q 045912 11 DQILIETERDKNWLISIRRQIHENPELRFEV------HNTNALIRSELDKLGITYSC-PL------------VKTGIVAK 71 (218)
Q Consensus 11 ~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E------~~~a~~i~~~L~~~G~~~~~-~~------------~~~~via~ 71 (218)
..+.++|+.++++++..+++.++|+|+|... ++.++|++++|+++|-+++. +. ..+-+.++
T Consensus 5 ~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~ 84 (473)
T KOG2276|consen 5 TKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGV 84 (473)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhc
Confidence 3577899999999999999999999987542 67799999999999966553 11 11335666
Q ss_pred ecCCC-CcEEEEEeeCCCCCcc---ccCCCCcccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhcccCC
Q 045912 72 IGSGS-HPFIALRADMDALPLQ---ELVNWEHKSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRKDQLN 134 (218)
Q Consensus 72 ~~~~~-~~~i~~~~h~D~vp~~---~~~~~pf~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~~~~~ 134 (218)
+|..+ .+++++-||||+.|.. .|+.+||.-. .+|+++|+|. | |+++..+.+.+++.+.+..++
T Consensus 85 ~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lp 155 (473)
T KOG2276|consen 85 LGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLP 155 (473)
T ss_pred ccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCcccc
Confidence 66543 4899999999999964 4788999976 4799999997 3 999999999999999886654
No 62
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.66 E-value=9.8e-15 Score=121.53 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhCCCCCCC--hH-HHHHHHHHHHHhcCCceee---cCCCceEEEEecCC--CCcEEEEEeeCCCCCcc
Q 045912 21 KNWLISIRRQIHENPELRFE--VH-NTNALIRSELDKLGITYSC---PLVKTGIVAKIGSG--SHPFIALRADMDALPLQ 92 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~--E~-~~a~~i~~~L~~~G~~~~~---~~~~~~via~~~~~--~~~~i~~~~h~D~vp~~ 92 (218)
+...+..+|+..+||++-++ =. ..++|+..+.+.+|..++. .++..+++.+|.|. +-|.|+|++|+|+||+-
T Consensus 24 ~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f 103 (420)
T KOG2275|consen 24 ENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVF 103 (420)
T ss_pred cchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCC
Confidence 45678888999999997432 23 7899999999999987643 35678999999553 24889999999999974
Q ss_pred --ccCCCCcccc--CCCcccccCC---cHHHHHHHHHHHHHHhhccc
Q 045912 93 --ELVNWEHKSK--IDGKMHACGH---DAPTTMLLGEAKLLHRRKDQ 132 (218)
Q Consensus 93 --~~~~~pf~~~--~~g~~~~~G~---d~~~a~ll~aa~~L~~~~~~ 132 (218)
.|+.+||+.. ++|.+||+|. ++..++.+.|++.|...+.+
T Consensus 104 ~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~k 150 (420)
T KOG2275|consen 104 REKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFK 150 (420)
T ss_pred cccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCC
Confidence 3788999986 4799999886 47788888999999876644
No 63
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.62 E-value=4.4e-15 Score=129.23 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhCCCCCCC------------hHHHHHHHHHHHHhcCCceeecCCCceEE--EEecCCCCcEEEEEeeCC
Q 045912 22 NWLISIRRQIHENPELRFE------------VHNTNALIRSELDKLGITYSCPLVKTGIV--AKIGSGSHPFIALRADMD 87 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~------------E~~~a~~i~~~L~~~G~~~~~~~~~~~vi--a~~~~~~~~~i~~~~h~D 87 (218)
+++++++++|++|||+++. +.++++||.++|+++||+++.. .|++ +.++++ .|+|+|.||||
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~---~~~~~~~~~~~~-~~~l~l~gH~D 77 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENV---DNYAGYAEYGQG-EEYLGILGHLD 77 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEe---cCceEEEEeCCC-CCeEEEEeecC
Confidence 4689999999999999732 4689999999999999998742 2333 334333 47999999999
Q ss_pred CCCcc-ccCCCCccccC-CCcccccCC---cHHHHHHHHHHHHHHhhcc
Q 045912 88 ALPLQ-ELVNWEHKSKI-DGKMHACGH---DAPTTMLLGEAKLLHRRKD 131 (218)
Q Consensus 88 ~vp~~-~~~~~pf~~~~-~g~~~~~G~---d~~~a~ll~aa~~L~~~~~ 131 (218)
|||.+ +|+.+||+... +|++||+|. ||++++++.|++.|++.+.
T Consensus 78 ~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~ 126 (447)
T TIGR01887 78 VVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGL 126 (447)
T ss_pred CCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCC
Confidence 99986 47889999874 789999874 5999999999999987653
No 64
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.16 E-value=4.4e-10 Score=93.69 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=69.0
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHhcCCceeec-----------C--------CCceEEEEecCCCCcEEEEEeeCCCCC
Q 045912 30 QIHENPELRFEVHNTNALIRSELDKLGITYSCP-----------L--------VKTGIVAKIGSGSHPFIALRADMDALP 90 (218)
Q Consensus 30 ~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~-----------~--------~~~~via~~~~~~~~~i~~~~h~D~vp 90 (218)
.+-.-+.-+..|.++++||+++|+++|++++.. . .+.||||.+.+...+.|+|.||||||+
T Consensus 43 ~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~AH~DTV~ 122 (346)
T PRK10199 43 FFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYA 122 (346)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEEEcCcCC
Confidence 343444557789999999999999999987531 1 135799999654458899999999997
Q ss_pred ccccCCCCccccCCCcccccCC---cHHHHHHHHHHHHHHhhc
Q 045912 91 LQELVNWEHKSKIDGKMHACGH---DAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 91 ~~~~~~~pf~~~~~g~~~~~G~---d~~~a~ll~aa~~L~~~~ 130 (218)
.....+.++... | .++.|. .+++|++|.+++.|++.+
T Consensus 123 p~~~~~~~~~~~--g-~~~~GA~DnasGvA~lLe~ar~l~~~~ 162 (346)
T PRK10199 123 PQSDADVDANLG--G-LTLQGMDDNAAGLGVMLELAERLKNVP 162 (346)
T ss_pred CCCCCccccCCC--C-cccCCccccHHHHHHHHHHHHHHhhCC
Confidence 432223333321 2 344444 489999999999998654
No 65
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.07 E-value=2.3e-09 Score=91.57 Aligned_cols=189 Identities=13% Similarity=0.123 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCce-ee-c------CCC--ce-EEEEecCC--CCcEEEEEeeCC
Q 045912 21 KNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITY-SC-P------LVK--TG-IVAKIGSG--SHPFIALRADMD 87 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~-~~-~------~~~--~~-via~~~~~--~~~~i~~~~h~D 87 (218)
.+.+++.+.++++||+.|++|.+++.++.+|.+.+|+.+ .. . +.. .| +.+++.+. .-|.+.|.+|||
T Consensus 4 ~~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~D 83 (414)
T COG2195 4 MERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHD 83 (414)
T ss_pred hHHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeecccccccccccccccc
Confidence 567899999999999999999999999999999999988 22 1 111 23 55556432 238899999999
Q ss_pred CCCcc-------cc-C--------------------CCCc----cccC----CCcccccCC--cHHHHHHHHHHHHHHhh
Q 045912 88 ALPLQ-------EL-V--------------------NWEH----KSKI----DGKMHACGH--DAPTTMLLGEAKLLHRR 129 (218)
Q Consensus 88 ~vp~~-------~~-~--------------------~~pf----~~~~----~g~~~~~G~--d~~~a~ll~aa~~L~~~ 129 (218)
|.|-. ++ . ..|. .... +|. -..|. ++++|.++.+...+.+.
T Consensus 84 t~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa-~LLgaD~kAGia~i~~al~~~~~~ 162 (414)
T COG2195 84 TVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGA-TLLGADDKAGIAEIMTALSVLREK 162 (414)
T ss_pred ccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCc-cccCCcchhHHHHHHHHHHHHhhc
Confidence 99621 01 0 0110 0000 121 11344 38888888888888854
Q ss_pred cccCC---------------------------------------------------------------------------
Q 045912 130 KDQLN--------------------------------------------------------------------------- 134 (218)
Q Consensus 130 ~~~~~--------------------------------------------------------------------------- 134 (218)
..++.
T Consensus 163 ~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~~i~a~ 242 (414)
T COG2195 163 HPEIPHGGIRGGFSPDEEIGGRGAANKDVARFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGKMINAL 242 (414)
T ss_pred CccccccCeEEEecchHHhhhhhhhhccHHhhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchHHHHhhHH
Confidence 22221
Q ss_pred ------------------------------CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhC--CeEEEE
Q 045912 135 ------------------------------AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHR--CNAYVD 182 (218)
Q Consensus 135 ------------------------------~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g--~~~~i~ 182 (218)
..|.|.+++.....+|+.+....+.....++++++..++..+ ..++++
T Consensus 243 ~~a~e~~~~~~~~~~~e~t~~~~Gv~~~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (414)
T COG2195 243 LLAAEFILELPLEEVPELTEGPEGVYHLGDSTNSVEETSLNLAIIRDFDNLLFRARKDSMKDVVEEMAASLGKLAGAELE 322 (414)
T ss_pred HhhhhhhhcCCcccccccccccceEEeccccccchhhhhhhhhhhhhcchhHHHHhHHHHHHHHHHHHHHhhhccceEEE
Confidence 678899999999999999999999999999999999988888 777777
Q ss_pred eeecccCCCCcc--cCCHHHHHHHHHHHHhhcCC
Q 045912 183 FQVEEFPLIPAA--LDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 183 ~~~~~~~~~p~~--~~d~~l~~~l~~~~~~~~G~ 214 (218)
. ...||.. ..++.+++.++++++++.++
T Consensus 323 ~----~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~ 352 (414)
T COG2195 323 V----KDSYPGWKIKPDSPLVDLAKKAYKELGIK 352 (414)
T ss_pred E----eccccCcCCCCCchHHHHHHHHHHHhCCC
Confidence 7 6677764 35678999999999997665
No 66
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.06 E-value=9e-10 Score=92.64 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecC-CCCcEEEEEeeCCCCCc
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGS-GSHPFIALRADMDALPL 91 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~-~~~~~i~~~~h~D~vp~ 91 (218)
+.+++++++|.++|++|++|.+++++|.++|+++|++++.+ ...|++|.+.+ ..+|.|+|.||||+|..
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D-~~Gnlia~~~g~~~~~~v~l~aHmDevG~ 72 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELT-RRGAIRATLPGREATPARAVVTHLDTLGA 72 (343)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEC-CCeEEEEEECCCCCCCeEEEEEeeccccc
Confidence 45889999999999999999999999999999999998765 46899998854 33589999999999974
No 67
>PRK09961 exoaminopeptidase; Provisional
Probab=99.06 E-value=6.7e-10 Score=93.59 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCc
Q 045912 25 ISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPL 91 (218)
Q Consensus 25 ~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~ 91 (218)
++++++|.++|++|++|.+++++|.++|+++|++++.+ ...|++|++++..+|.|+|.||||+|+.
T Consensus 3 ~~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~D-~~Gnvi~~~~g~~~~~v~l~aHmDevg~ 68 (344)
T PRK09961 3 LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFD-GLGSVLIRLNESTGPKVMICAHMDEVGF 68 (344)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEEcCCCCCEEEEEeccceece
Confidence 36799999999999999999999999999999998764 5689999885544589999999999983
No 68
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.86 E-value=9.5e-09 Score=86.57 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCC--CCcEEEEEeeCCCCC
Q 045912 26 SIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSG--SHPFIALRADMDALP 90 (218)
Q Consensus 26 ~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~--~~~~i~~~~h~D~vp 90 (218)
+++++|.++|++|++|.+.++++.++|++++.+++.+ .-.|++|..+++ .+|.|+|.||||+|+
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D-~~GNvia~~~g~~~~~~~vml~AHmDeVG 67 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETD-GLGGIFGIKESQVENAPRVMVAAHMDEVG 67 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEecCCCCCCCEEEEEecccEeC
Confidence 5789999999999999999999999999999988765 357999988552 358999999999997
No 69
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.3e-08 Score=83.73 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCC-cEEEEEeeCCCCC
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSH-PFIALRADMDALP 90 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~-~~i~~~~h~D~vp 90 (218)
+++.+++++|..+|++|+.|.++.+++.++|++++.+++++ ...|++|+.++.++ |.|++.||||.|-
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D-~lGnlia~~~g~~g~~~imi~AHmDEiG 70 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVD-RLGNLIAKKGGKNGPPKVMIAAHMDEIG 70 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEc-CCCcEEEEecCCCCCccEEEEeecceee
Confidence 46789999999999999999999999999999999998765 46899999976334 5599999999985
No 70
>PRK09864 putative peptidase; Provisional
Probab=98.76 E-value=3.6e-08 Score=83.05 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCC
Q 045912 25 ISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALP 90 (218)
Q Consensus 25 ~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp 90 (218)
.+++++|.++|++|+.|.++++++.++|++++.++..+ ...|++|..+ .++|.|+|.||||.|+
T Consensus 3 ~~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D-~~GNli~~~g-~~~~kvml~AHmDevG 66 (356)
T PRK09864 3 IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFD-GLGSFVARKG-NKGPKVAVVGHMDEVG 66 (356)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEEC-CCCCEEEEeC-CCCcEEEEEecccccC
Confidence 46799999999999999999999999999999998765 3579999873 3357999999999997
No 71
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.71 E-value=2.5e-08 Score=76.60 Aligned_cols=50 Identities=24% Similarity=0.283 Sum_probs=40.3
Q ss_pred EEEeeCCCCCc-cccCCCCcccc-CCCcccccCC-c--HHHHHHHHHHHHHHhhc
Q 045912 81 ALRADMDALPL-QELVNWEHKSK-IDGKMHACGH-D--APTTMLLGEAKLLHRRK 130 (218)
Q Consensus 81 ~~~~h~D~vp~-~~~~~~pf~~~-~~g~~~~~G~-d--~~~a~ll~aa~~L~~~~ 130 (218)
+|.|||||||. ..|..+||... .+|++||||+ | +++++++.+++.|++..
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~ 55 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESG 55 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhcc
Confidence 58999999993 34678899865 5799999998 3 88999999999998644
No 72
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.24 E-value=5.8e-06 Score=70.15 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHhcCCc-ee-----e-----cC-CCceEEEEecCC-CCcEEEEEee
Q 045912 21 KNWLISIRRQIHENPELRF--EVHNTNALIRSELDKLGIT-YS-----C-----PL-VKTGIVAKIGSG-SHPFIALRAD 85 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~--~E~~~a~~i~~~L~~~G~~-~~-----~-----~~-~~~~via~~~~~-~~~~i~~~~h 85 (218)
.+++.++.-.|++.||+.+ .|...+++|...|+++-+- -. . ++ ++.||+|.++++ +.++|++.||
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH 86 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGH 86 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeec
Confidence 5778899999999999976 5888899999999987531 11 1 12 678999999664 3489999999
Q ss_pred CCCCCcccc---CCCCccc---------------c-------CCCcccccCC---cHHHHHHHHHHHHHHhh
Q 045912 86 MDALPLQEL---VNWEHKS---------------K-------IDGKMHACGH---DAPTTMLLGEAKLLHRR 129 (218)
Q Consensus 86 ~D~vp~~~~---~~~pf~~---------------~-------~~g~~~~~G~---d~~~a~ll~aa~~L~~~ 129 (218)
||||.+.+- .+.-|.+ + .++.|.|+|. ++|+|+-|++.+.+.+.
T Consensus 87 ~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~ 158 (553)
T COG4187 87 FDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR 158 (553)
T ss_pred cceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC
Confidence 999986542 2222222 0 1247888884 58888888877777654
No 73
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=97.96 E-value=2e-05 Score=55.20 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=37.8
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHH
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAV 174 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~ 174 (218)
..|+||++|++++|+|..|.+..+++.+.|+++++..+.+
T Consensus 71 ~~n~ip~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~~ 110 (111)
T PF07687_consen 71 APNVIPDEATLTVDIRYPPGEDLEEIKAEIEAAVEKIAKK 110 (111)
T ss_dssp STTEESSEEEEEEEEEESTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEECCEEEEEEEEECCCcchHHHHHHHHHHHHHHhhhC
Confidence 8999999999999999999999999999999999988753
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.00 E-value=0.0052 Score=56.77 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhC-CCC--CC-ChHHHHHHHHHHHHhcC---------Cceeec---------------CCCceEEEEecC
Q 045912 23 WLISIRRQIHEN-PEL--RF-EVHNTNALIRSELDKLG---------ITYSCP---------------LVKTGIVAKIGS 74 (218)
Q Consensus 23 ~~~~~~~~L~~~-pe~--~~-~E~~~a~~i~~~L~~~G---------~~~~~~---------------~~~~~via~~~~ 74 (218)
+....+++|.++ |-+ |. +|..+..+|.+.+.+.. +++... ..-.|++.++.+
T Consensus 58 rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~~ 137 (834)
T KOG2194|consen 58 RALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKISP 137 (834)
T ss_pred HHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecCC
Confidence 344555566665 444 33 56788899988877642 111110 123689999954
Q ss_pred CC---CcEEEEEeeCCCCCccccCCCCccccCCCcccccCCcH-HHHHHHHHHHHHHhhcccC
Q 045912 75 GS---HPFIALRADMDALPLQELVNWEHKSKIDGKMHACGHDA-PTTMLLGEAKLLHRRKDQL 133 (218)
Q Consensus 75 ~~---~~~i~~~~h~D~vp~~~~~~~pf~~~~~g~~~~~G~d~-~~a~ll~aa~~L~~~~~~~ 133 (218)
+. .-.|++++|.|+||.+ .|.|.|| .+|+||.+++.+......+
T Consensus 138 k~~~~~~~lLlnaHfDSvpt~---------------~gAtDDg~~va~mLe~lRv~s~~~~~l 185 (834)
T KOG2194|consen 138 KNGNDKNALLLNAHFDSVPTG---------------PGATDDGSGVASMLEALRVLSKSDKLL 185 (834)
T ss_pred CCCCccceeeeeccccccCCC---------------CCCCcchhHHHHHHHHHHHhhcCCCcc
Confidence 32 2479999999999953 5567775 6788999999998766533
No 75
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=95.72 E-value=0.054 Score=47.93 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=53.1
Q ss_pred ccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcc--cCCHHHHHHHHHHHHhhcCCC
Q 045912 138 VISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAA--LDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 138 vIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~--~~d~~l~~~l~~~~~~~~G~~ 215 (218)
.-|+++.+.+|+|+.+....+++.+.+++.++ ..++++++. ..+||. ..|.++++.+.+++++.+|.+
T Consensus 347 ~~~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~----~~~~~v~~~------~~~~p~~~~~d~plv~~l~~a~~~~~g~~ 416 (477)
T TIGR01893 347 TKENKVIFTFLIRSSVESDKDYVTEKIESIAK----LAGARVEVS------AGYPSWQPDPQSNLLDTARKVYSEMFGED 416 (477)
T ss_pred EcCCEEEEEEEeCCCCchhHHHHHHHHHHHhh----hcCeEEEEe------cCCCcccCCCCCHHHHHHHHHHHHHHCCC
Confidence 34789999999999999999999999988876 235444442 344554 356799999999999988875
Q ss_pred C
Q 045912 216 N 216 (218)
Q Consensus 216 ~ 216 (218)
.
T Consensus 417 ~ 417 (477)
T TIGR01893 417 P 417 (477)
T ss_pred C
Confidence 3
No 76
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=95.51 E-value=0.085 Score=46.85 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=52.3
Q ss_pred CCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccC--CHHHHHHHHHHHHhhcCCCC
Q 045912 140 SPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALD--NDSLYLLVERVGKSLLGPEN 216 (218)
Q Consensus 140 Pd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~--d~~l~~~l~~~~~~~~G~~~ 216 (218)
-+.+++.+++|+......+.+.++++.+++ ..|.++ +. ...||+... |+++++.+.++.++++|.+.
T Consensus 355 ~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~----~~g~~~--~~----~~~~p~w~~~~ds~lv~~l~~~y~e~~G~~~ 423 (485)
T PRK15026 355 DNNVEIHCLIRSLIDSGKDYVVSMLDSLGK----LAGAKT--EA----KGAYPGWQPDANSPVMHLVRETYQRLFNKTP 423 (485)
T ss_pred CCEEEEEEEecCCCchHHHHHHHHHHHHHH----HcCcEE--EE----eCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 356899999999999999999999988744 346544 44 446777654 57999999999999999864
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.23 Score=40.43 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHhcCCceeecC-------C---CceEEEEecCCCCcEEEEEeeCCCCCccccCCCCccccCCCcc-
Q 045912 39 FEVHNTNALIRSELDKLGITYSCPL-------V---KTGIVAKIGSGSHPFIALRADMDALPLQELVNWEHKSKIDGKM- 107 (218)
Q Consensus 39 ~~E~~~a~~i~~~L~~~G~~~~~~~-------~---~~~via~~~~~~~~~i~~~~h~D~vp~~~~~~~pf~~~~~g~~- 107 (218)
.+-.++.+||.+.|+++|+.++.+. + -.|+++++.......+++++|+|.=-... |.+
T Consensus 69 ~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~r~lVlachydsk~~p~-----------~~~v 137 (338)
T KOG3946|consen 69 PGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNASRYLVLACHYDSKIFPG-----------GMFV 137 (338)
T ss_pred CccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcchheeeecccccccCCC-----------cceE
Confidence 3558899999999999999887531 1 25899999765457899999999863221 221
Q ss_pred cccCCcHHHHHHHHHHHHHHhh
Q 045912 108 HACGHDAPTTMLLGEAKLLHRR 129 (218)
Q Consensus 108 ~~~G~d~~~a~ll~aa~~L~~~ 129 (218)
.+.|--.-+||++..|++|...
T Consensus 138 gatdsAvpcamll~laq~l~~~ 159 (338)
T KOG3946|consen 138 GATDSAVPCAMLLNLAQALDKI 159 (338)
T ss_pred eeccccccHHHHHHHHHHHHHH
Confidence 2233335689999999988753
No 78
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=94.43 E-value=0.93 Score=40.10 Aligned_cols=185 Identities=16% Similarity=0.091 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec-------CCCceEEEEecCC-CCcEEEEEeeCCCCCcc
Q 045912 21 KNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP-------LVKTGIVAKIGSG-SHPFIALRADMDALPLQ 92 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~-------~~~~~via~~~~~-~~~~i~~~~h~D~vp~~ 92 (218)
..+-+.+.|+|++.|.--..=...++++.+.+++.|++++.. .+-.++++.=.+. ..|.++..-+-..=+
T Consensus 153 ~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~-- 230 (468)
T cd00433 153 IAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGA-- 230 (468)
T ss_pred HHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCC--
Confidence 345688999999999755555777999999999999998752 2334566654332 346655554432111
Q ss_pred ccCCCCccccCCCcc---------cc---cCC--c-HHHHHHHHHHHHHHhhcccCC-------CCCccCCeEEEE----
Q 045912 93 ELVNWEHKSKIDGKM---------HA---CGH--D-APTTMLLGEAKLLHRRKDQLN-------AADVISPRAEFG---- 146 (218)
Q Consensus 93 ~~~~~pf~~~~~g~~---------~~---~G~--d-~~~a~ll~aa~~L~~~~~~~~-------~~NvIPd~a~~~---- 146 (218)
...|..-...|+. .+ .+| | +|.|+++++++++.+++.+.. .-|.|.+.+...
T Consensus 231 --~~~~i~LVGKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~~~vnV~~i~~~~EN~is~~A~rPgDVi 308 (468)
T cd00433 231 --SKKPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNVVGVLPLAENMISGNAYRPGDVI 308 (468)
T ss_pred --CCCcEEEEcCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcCCCceEEEEEEeeecCCCCCCCCCCCEe
Confidence 1122211111111 11 233 3 899999999999998875433 556665555444
Q ss_pred -------EeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe---eecc----cCCCCc-ccCCHHHHHHHHHHHHhh
Q 045912 147 -------GTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF---QVEE----FPLIPA-ALDNDSLYLLVERVGKSL 211 (218)
Q Consensus 147 -------~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~---~~~~----~~~~p~-~~~d~~l~~~l~~~~~~~ 211 (218)
++|...+.|-+--+-+.|-...+ ++.+.-|+. +|.+ -..+.. +.|++++.+.+.++.+.
T Consensus 309 ~s~~GkTVEI~NTDAEGRLVLaDal~ya~~-----~~p~~iIDiATLTGA~~vALG~~~ag~~sn~d~l~~~l~~Ag~~- 382 (468)
T cd00433 309 TSRSGKTVEILNTDAEGRLVLADALTYAQE-----FKPDLIIDIATLTGAAVVALGHDYAGLFTNDDELAKQLLAAGEA- 382 (468)
T ss_pred EeCCCcEEEEecCCcccceeehhHHHHHhh-----cCCCEEEEecchHHHHHHHcCCCceEEecCCHHHHHHHHHHHHH-
Confidence 44555555544444444433322 344444443 1100 122333 46788999999888765
Q ss_pred cCCC
Q 045912 212 LGPE 215 (218)
Q Consensus 212 ~G~~ 215 (218)
.|+.
T Consensus 383 ~gE~ 386 (468)
T cd00433 383 SGER 386 (468)
T ss_pred hCCc
Confidence 4553
No 79
>PRK05015 aminopeptidase B; Provisional
Probab=93.72 E-value=2.3 Score=36.91 Aligned_cols=194 Identities=14% Similarity=0.033 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc---CCceeec-------CCCceEEEEecCC
Q 045912 6 DEAFADQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKL---GITYSCP-------LVKTGIVAKIGSG 75 (218)
Q Consensus 6 ~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~---G~~~~~~-------~~~~~via~~~~~ 75 (218)
++...+++...++ .+.+.|+|++.|.--..=...++...++++++ |++++.. .+-.++++.=.+.
T Consensus 89 ~~~~~~~l~~~~~-----~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS 163 (424)
T PRK05015 89 DDAQQQELDARLK-----IIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGS 163 (424)
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccC
Confidence 4444444444333 57889999999975555566677777787776 4666542 2334566654332
Q ss_pred -CCcEEEEEeeCCCCCccccCCCCc--cccCCCcc------------cccCC--c-HHHHHHHHHHHHHHhhcccCC---
Q 045912 76 -SHPFIALRADMDALPLQELVNWEH--KSKIDGKM------------HACGH--D-APTTMLLGEAKLLHRRKDQLN--- 134 (218)
Q Consensus 76 -~~~~i~~~~h~D~vp~~~~~~~pf--~~~~~g~~------------~~~G~--d-~~~a~ll~aa~~L~~~~~~~~--- 134 (218)
..|.++.. ++- |.++ .+.|. .-...|+- +-.+| | +|.|++++++.++.+.+.+..
T Consensus 164 ~~pP~lv~L-~Y~--~~g~-~~~~v~~aLVGKGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~~l~~nV~~ 239 (424)
T PRK05015 164 ERPPVLLAL-DYN--PTGD-PDAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITRGLNKRVKL 239 (424)
T ss_pred CCCCEEEEE-Eec--CCCC-CCCCeeEEEecCceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhcCCCceEEE
Confidence 23444333 332 2221 11221 11111111 11233 3 788899988887776553322
Q ss_pred ----CCCccCCeEEEE-----------EeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe---eecc----cCCCC
Q 045912 135 ----AADVISPRAEFG-----------GTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF---QVEE----FPLIP 192 (218)
Q Consensus 135 ----~~NvIPd~a~~~-----------~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~---~~~~----~~~~p 192 (218)
.-|.|.+.+... ++|...+.|-+--+-+.+-.. ...+.+.-|+. +|.+ -..|.
T Consensus 240 il~~aENmisg~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA-----~~~~p~~IID~ATLTGA~~~ALG~~~a 314 (424)
T PRK05015 240 FLCCAENLISGNAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDA-----SEQGPPLIIDAATLTGAAKTALGNDYH 314 (424)
T ss_pred EEEecccCCCCCCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHh-----hhcCCCEEEEeeccchhhHhhhCCCce
Confidence 567666655544 444555554433333333322 12344444443 1100 12233
Q ss_pred c-ccCCHHHHHHHHHHHHhhcCC
Q 045912 193 A-ALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 193 ~-~~~d~~l~~~l~~~~~~~~G~ 214 (218)
. +.+|+++.+.+.++++. .|+
T Consensus 315 gvfsndd~l~~~l~~a~~~-~gE 336 (424)
T PRK05015 315 ALFSFDDELAQRLLASAAQ-ENE 336 (424)
T ss_pred eeecCCHHHHHHHHHHHHH-hCC
Confidence 3 46788999999888765 344
No 80
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=93.41 E-value=0.3 Score=42.92 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=45.4
Q ss_pred CCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcc--cCCHHHHHHHHHHHHhhcCCC
Q 045912 140 SPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAA--LDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 140 Pd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~--~~d~~l~~~l~~~~~~~~G~~ 215 (218)
|++|++++|+|+.+++..+++.+++...+. +. .++.. ....+|. ..+.++++.+.++.++.+|.+
T Consensus 326 p~~~~~~~d~R~~p~~~~e~~~~~i~~~~~------~~-~~~~~----~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~ 392 (447)
T TIGR01887 326 AEAGLIGLNVRYPVGNDPDTMLKNELAKES------GI-VEVTE----NGYLKPLYVPKDDPLVQTLMKVYEKQTGDE 392 (447)
T ss_pred CcEEEEEEEEecCCCCCHHHHHHHHHHHhh------Cc-EEEEE----ccCCCCeEECCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999998877777663321 22 22222 2223333 346799999999999888765
No 81
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=93.39 E-value=1 Score=40.32 Aligned_cols=189 Identities=15% Similarity=0.060 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCcee-ec-------CCCceEEEEecCC-CCcEEEEEeeCCCCCcc
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYS-CP-------LVKTGIVAKIGSG-SHPFIALRADMDALPLQ 92 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~-~~-------~~~~~via~~~~~-~~~~i~~~~h~D~vp~~ 92 (218)
.+-+.+.|+|++.|.--..=...++.+.+.+++.|++++ .. .+-.++++.=.+. ..|.++..-+. +.+
T Consensus 212 a~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~---g~~ 288 (569)
T PTZ00412 212 GHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYI---GNP 288 (569)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeC---CCC
Confidence 355789999999987544445668888888888899885 31 2334566654333 24555544442 111
Q ss_pred ccCCCCccccCCCcc---------cc---cCC--c-HHHHHHHHHHHHHHhhcccCC-------CCCccCCeEEE-----
Q 045912 93 ELVNWEHKSKIDGKM---------HA---CGH--D-APTTMLLGEAKLLHRRKDQLN-------AADVISPRAEF----- 145 (218)
Q Consensus 93 ~~~~~pf~~~~~g~~---------~~---~G~--d-~~~a~ll~aa~~L~~~~~~~~-------~~NvIPd~a~~----- 145 (218)
....|..-...|+. .+ .+| | +|.|+++++++++.+++.+.. .-|.|-+.+..
T Consensus 289 -~~~~~iaLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~LklpvnVv~iiplaENm~sg~A~rPGDVi 367 (569)
T PTZ00412 289 -RSSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQLPVNVVAAVGLAENAIGPESYHPSSII 367 (569)
T ss_pred -CCCCcEEEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcCCCeEEEEEEEhhhcCCCCCCCCCCCEe
Confidence 01122221111111 11 123 4 899999999999998765433 45655554443
Q ss_pred ------EEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe---eecc----cCCCC-cccCCHHHHHHHHHHHHhh
Q 045912 146 ------GGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF---QVEE----FPLIP-AALDNDSLYLLVERVGKSL 211 (218)
Q Consensus 146 ------~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~---~~~~----~~~~p-~~~~d~~l~~~l~~~~~~~ 211 (218)
+++|...+.|-.--+-+.+--..+.....++.+.-|+. +|.+ -..+. .+.||+++.+.+.++.+.
T Consensus 368 ts~nGkTVEV~NTDAEGRLVLADaL~YA~~~~~~~~~P~~iIDiATLTGA~vvALG~~~aGvfsN~d~l~~~l~~Ag~~- 446 (569)
T PTZ00412 368 TSRKGLTVEVLNTDAEGRLVLADTLTYVQKDAKLDKKPTTIIDIATLTGAIIVGLGSRRAGLFSNDAHLAQSLMASGRS- 446 (569)
T ss_pred EecCCCEEeecccCchhhhhhHHHHHHHHhhhccccCCcEEEEecccHHHHHHHhCCCceEEecCCHHHHHHHHHHHHH-
Confidence 45556666655444444443322210000133333332 1100 11222 346788999999888765
Q ss_pred cCCC
Q 045912 212 LGPE 215 (218)
Q Consensus 212 ~G~~ 215 (218)
.|+.
T Consensus 447 sGE~ 450 (569)
T PTZ00412 447 SGEE 450 (569)
T ss_pred hCCc
Confidence 4553
No 82
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=93.06 E-value=0.24 Score=37.47 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCccccCCCCccccCCCcccccCCc-HHHHHHHHHHHHHHhhc
Q 045912 79 FIALRADMDALPLQELVNWEHKSKIDGKMHACGHD-APTTMLLGEAKLLHRRK 130 (218)
Q Consensus 79 ~i~~~~h~D~vp~~~~~~~pf~~~~~g~~~~~G~d-~~~a~ll~aa~~L~~~~ 130 (218)
.|++.||+|+++ +.... ....|...+ +++|++|..|+.|++..
T Consensus 2 ~ivi~aH~Ds~~-~~~~~--------~~~~GA~DnasGva~lLelAr~l~~~~ 45 (179)
T PF04389_consen 2 YIVIGAHYDSVG-GDADG--------SWSPGANDNASGVAALLELARVLKELK 45 (179)
T ss_dssp EEEEEEE--BES-CCC-T--------CSSS-TTTTHHHHHHHHHHHHHHHHST
T ss_pred EEEEEeecCCCC-CcCCC--------cccCCcccchHHHHHHHHHHHHHHHhh
Confidence 689999999997 22111 112333444 69999999999999854
No 83
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=92.79 E-value=1.5 Score=39.00 Aligned_cols=184 Identities=15% Similarity=0.087 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec-------CCCceEEEEecCC-CCcEEEEEeeC-C--C-C
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP-------LVKTGIVAKIGSG-SHPFIALRADM-D--A-L 89 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~-------~~~~~via~~~~~-~~~~i~~~~h~-D--~-v 89 (218)
.+-+.+.|+|++.|.--..=...++++.+.+++.|++++.. .+-.++++.=.+. ..|.++..-+- + + +
T Consensus 171 a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~~~i~ 250 (483)
T PRK00913 171 AEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGKKPIA 250 (483)
T ss_pred HHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCCCeEE
Confidence 45678999999999755555677888999999999988752 2334566653332 24555554443 1 1 1
Q ss_pred CccccCCCCcccc----CC-CcccccCC--c-HHHHHHHHHHHHHHhhcccCC-------CCCccCCeEEE---------
Q 045912 90 PLQELVNWEHKSK----ID-GKMHACGH--D-APTTMLLGEAKLLHRRKDQLN-------AADVISPRAEF--------- 145 (218)
Q Consensus 90 p~~~~~~~pf~~~----~~-g~~~~~G~--d-~~~a~ll~aa~~L~~~~~~~~-------~~NvIPd~a~~--------- 145 (218)
-+| .+.-|.+= ++ +-|+ +| | +|.|+++++++++.+.+.+.. .-|.|-+.+..
T Consensus 251 LVG--KGITFDsGG~slKp~~~M~--~MK~DM~GAAaVlga~~aia~lkl~vnV~~v~~l~ENm~~~~A~rPgDVi~~~~ 326 (483)
T PRK00913 251 LVG--KGLTFDSGGISLKPAAGMD--EMKYDMGGAAAVLGTMRALAELKLPVNVVGVVAACENMPSGNAYRPGDVLTSMS 326 (483)
T ss_pred EEc--CceEecCCCccCCCCcChh--hcccccHhHHHHHHHHHHHHHcCCCceEEEEEEeeccCCCCCCCCCCCEEEECC
Confidence 122 12222220 00 1122 23 3 899999999999998775433 44555544443
Q ss_pred --EEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe---eecc----cCCCCc-ccCCHHHHHHHHHHHHhhcCCC
Q 045912 146 --GGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF---QVEE----FPLIPA-ALDNDSLYLLVERVGKSLLGPE 215 (218)
Q Consensus 146 --~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~---~~~~----~~~~p~-~~~d~~l~~~l~~~~~~~~G~~ 215 (218)
++++...+.|-+--+-+.|--. + .++.+.-|+. +|.+ -..+.. +.||+.+.+.+.++.+. .|+.
T Consensus 327 GkTVEV~NTDAEGRLvLADal~ya-~----~~~p~~iiDiATLTGa~~vALG~~~ag~~sn~~~l~~~~~~a~~~-~gE~ 400 (483)
T PRK00913 327 GKTIEVLNTDAEGRLVLADALTYA-E----RFKPDAIIDVATLTGACVVALGHHTAGLMSNNDELADELLKAGEE-SGER 400 (483)
T ss_pred CcEEEeecCCcccceeehhHHHHh-h----hcCCCEEEEecchHHHHHHHcCCCcEEEEeCCHHHHHHHHHHHHH-HCCc
Confidence 4555555555444444443322 1 2344444443 1100 122333 46788999999888765 4553
No 84
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=91.24 E-value=0.24 Score=41.05 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=17.4
Q ss_pred ceEEEEecC-CCCcEEEEEeeCCCCC
Q 045912 66 TGIVAKIGS-GSHPFIALRADMDALP 90 (218)
Q Consensus 66 ~~via~~~~-~~~~~i~~~~h~D~vp 90 (218)
.|+++++++ ..+|.|+|.||||.+-
T Consensus 1 Gnvi~~~~g~~~~~~vmi~AHmDEiG 26 (292)
T PF05343_consen 1 GNVIARKKGKEGGPKVMIAAHMDEIG 26 (292)
T ss_dssp S-EEEEECSSCSSSEEEEEEE--B-E
T ss_pred CcEEEEECCCCCCceEEEEEccceee
Confidence 489999977 3459999999999985
No 85
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=86.34 E-value=6.7 Score=34.20 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=44.5
Q ss_pred HHHHHHhcCCceeecC---------CCceEEEEec-C----C---CCcEEEEEeeCCCCCccccCCCCccccCCCccccc
Q 045912 48 IRSELDKLGITYSCPL---------VKTGIVAKIG-S----G---SHPFIALRADMDALPLQELVNWEHKSKIDGKMHAC 110 (218)
Q Consensus 48 i~~~L~~~G~~~~~~~---------~~~~via~~~-~----~---~~~~i~~~~h~D~vp~~~~~~~pf~~~~~g~~~~~ 110 (218)
+..-....|+...... .-+|+.+++. + + .-|+|++.||+||-..- | | ...
T Consensus 167 ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaa-----p------~--lsv 233 (555)
T KOG2526|consen 167 LLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAA-----P------G--LSV 233 (555)
T ss_pred HHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccC-----C------C--CCC
Confidence 3334455677654311 1268888874 2 1 23999999999998532 1 2 334
Q ss_pred CCc---HHHHHHHHHHHHHHhhc
Q 045912 111 GHD---APTTMLLGEAKLLHRRK 130 (218)
Q Consensus 111 G~d---~~~a~ll~aa~~L~~~~ 130 (218)
|.| +|+.++|..++.+....
T Consensus 234 gADSNGSGvvaLLelarlfSkly 256 (555)
T KOG2526|consen 234 GADSNGSGVVALLELARLFSKLY 256 (555)
T ss_pred CCCCCCccHHHHHHHHHHHHHHh
Confidence 444 47778999999998765
No 86
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=85.98 E-value=8.6 Score=34.23 Aligned_cols=188 Identities=13% Similarity=0.069 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec------CCCce-EEEEecCC-CCcEEEEEeeCCCCCccc
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP------LVKTG-IVAKIGSG-SHPFIALRADMDALPLQE 93 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~------~~~~~-via~~~~~-~~~~i~~~~h~D~vp~~~ 93 (218)
.+-..+.|+|...|.=-..=-..++++.+.|...|+.++.. ...-| +.+.=.+. .+|.++...|-.+=|..+
T Consensus 189 ~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~~~~ 268 (513)
T KOG2597|consen 189 AAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSGADK 268 (513)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCCCcc
Confidence 34567778888877544455677899999999999876542 12334 44433222 346777777765533211
Q ss_pred c-----CCCCcccc-----CCCcccc-cCCcHHHHHHHHHHHHHHhhcccCC-------CCCccCCeEEEE---------
Q 045912 94 L-----VNWEHKSK-----IDGKMHA-CGHDAPTTMLLGEAKLLHRRKDQLN-------AADVISPRAEFG--------- 146 (218)
Q Consensus 94 ~-----~~~pf~~~-----~~g~~~~-~G~d~~~a~ll~aa~~L~~~~~~~~-------~~NvIPd~a~~~--------- 146 (218)
. ++.-|.+- ..+.|++ |+.-+|.|+++++.+++.+.+.+.. --|.+.+.|.-.
T Consensus 269 ~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~~~in~~~v~plcENm~sg~A~kpgDVit~~nG 348 (513)
T KOG2597|consen 269 TILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLSLPINVHAVLPLCENMPSGNATKPGDVITLRNG 348 (513)
T ss_pred eEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcCCCCceEEEEeeeccCCCccCCCCCcEEEecCC
Confidence 1 22333321 0011221 3333889999999999988775533 345554444433
Q ss_pred --EeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe---eecc----cCCC-CcccCCHHHHHHHHHHHHhhcCC
Q 045912 147 --GTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF---QVEE----FPLI-PAALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 147 --~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~---~~~~----~~~~-p~~~~d~~l~~~l~~~~~~~~G~ 214 (218)
+.|...+.|-.--+.+.+--..+ .++.++-++. .|.. -... ..+.|++.+-+.++++..+ +|+
T Consensus 349 KtveI~NTDAEGRLiLADaL~Ya~~----~~~~~~I~d~aTLTGa~~ialG~~~~gi~Tns~~l~k~~~~Ag~~-tGD 421 (513)
T KOG2597|consen 349 KTVEINNTDAEGRLVLADALLYAQE----TLKPKLIVDIATLTGAMRIALGEGAAGIFTNSEELWKRLQKAGIE-TGD 421 (513)
T ss_pred cEEEecccCccceEEeccHHHHhhh----hcCCCEEEEeccchhhhHhhcCccceEEEcChHHHHHHHHHHHHh-hCC
Confidence 33444444433333333322211 1333433332 0000 0011 1245778888888777654 454
No 87
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=82.78 E-value=18 Score=32.26 Aligned_cols=184 Identities=16% Similarity=0.101 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC-Cceeec-------CCCceEEEEecCC-CCcEEEE---EeeCC-C
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKLG-ITYSCP-------LVKTGIVAKIGSG-SHPFIAL---RADMD-A 88 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G-~~~~~~-------~~~~~via~~~~~-~~~~i~~---~~h~D-~ 88 (218)
-+.+.+.|+|++.|.---.=...++. ++.|.+.+ ++++.. .+...+++.=.+. ..|+++. +|.=+ .
T Consensus 167 ~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~~~ 245 (485)
T COG0260 167 AEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAK 245 (485)
T ss_pred HHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCCCC
Confidence 35689999999999754444455666 77777775 776542 2334566654332 2354332 33322 2
Q ss_pred CCccc-cCCCCccccCCCcc--ccc---CC--c-HHHHHHHHHHHHHHhhcccCC-------CCCccCCeEE--------
Q 045912 89 LPLQE-LVNWEHKSKIDGKM--HAC---GH--D-APTTMLLGEAKLLHRRKDQLN-------AADVISPRAE-------- 144 (218)
Q Consensus 89 vp~~~-~~~~pf~~~~~g~~--~~~---G~--d-~~~a~ll~aa~~L~~~~~~~~-------~~NvIPd~a~-------- 144 (218)
.|+.= ..+.-|.+ .|.- .+- +| | ||.|++++++.++.+.+.+.. .-|.+.+.+.
T Consensus 246 ~~iaLVGKGitFDs--GGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~l~vnv~~vl~~~ENm~~g~A~rPGDVits 323 (485)
T COG0260 246 KPIALVGKGITFDS--GGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELKLPVNVVGVLPAVENMPSGNAYRPGDVITS 323 (485)
T ss_pred ceEEEEcCceeecC--CCcccCCccchhhhhcccchHHHHHHHHHHHHHcCCCceEEEEEeeeccCCCCCCCCCCCeEEe
Confidence 22100 01222222 1110 122 23 3 899999999999998775433 4455544443
Q ss_pred ---EEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe---eecc----cCCCCc-ccCCHHHHHHHHHHHHhhcC
Q 045912 145 ---FGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF---QVEE----FPLIPA-ALDNDSLYLLVERVGKSLLG 213 (218)
Q Consensus 145 ---~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~---~~~~----~~~~p~-~~~d~~l~~~l~~~~~~~~G 213 (218)
.+++|...+.|-+--+-+.|--..+ ...+.-|+. +|.+ -..++. +.+|++|.+.+.+++++ .|
T Consensus 324 ~~GkTVEV~NTDAEGRLVLADaLtYA~~-----~kp~~iID~ATLTGA~~vALG~~~~g~fs~dd~La~~l~~As~~-~g 397 (485)
T COG0260 324 MNGKTVEVLNTDAEGRLVLADALTYAEE-----LKPDLIIDVATLTGAAVVALGNDYTGLFSNDDELANQLLAASEE-TG 397 (485)
T ss_pred cCCcEEEEcccCccHHHHHHHHHHHHHH-----cCCCEEEEehhhHhHHHHHhCCCccccccCCHHHHHHHHHHHHH-cC
Confidence 3455555666555545554443322 233333432 1100 234444 46789999999988876 35
Q ss_pred C
Q 045912 214 P 214 (218)
Q Consensus 214 ~ 214 (218)
+
T Consensus 398 E 398 (485)
T COG0260 398 E 398 (485)
T ss_pred C
Confidence 4
No 88
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=75.72 E-value=47 Score=27.86 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceeec-------CCC-------------ce-EEEEecC-C--CCcEE
Q 045912 25 ISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSCP-------LVK-------------TG-IVAKIGS-G--SHPFI 80 (218)
Q Consensus 25 ~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~-------~~~-------------~~-via~~~~-~--~~~~i 80 (218)
+.+.|+|.+.|.--..=...++++.+.+++.|++++.. .+- +- ++.++.+ + ..++|
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 35789999999876777888999999999999887652 111 11 2333322 2 13455
Q ss_pred EEEeeCCCCCccccCCCCccc-----cCCCcccccCCc-HHHHHHHHHHHHHHhhcccCC-------------CCCccCC
Q 045912 81 ALRADMDALPLQELVNWEHKS-----KIDGKMHACGHD-APTTMLLGEAKLLHRRKDQLN-------------AADVISP 141 (218)
Q Consensus 81 ~~~~h~D~vp~~~~~~~pf~~-----~~~g~~~~~G~d-~~~a~ll~aa~~L~~~~~~~~-------------~~NvIPd 141 (218)
+|.|= ..-|.+ +..+-|+.-=.| +|.|+++++++++.+++.+.. +.-..|+
T Consensus 81 ~LVGK----------GiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~lk~~vnV~~~l~~~EN~i~~~a~~pg 150 (311)
T PF00883_consen 81 ALVGK----------GITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKLKLPVNVVAVLPLAENMISGNAYRPG 150 (311)
T ss_dssp EEEEE----------EEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHCT-SSEEEEEEEEEEE--STTSTTTT
T ss_pred EEEcc----------eEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHcCCCceEEEEEEcccccCCCCCCCCC
Confidence 55442 111221 111123221113 899999999999998775433 2234455
Q ss_pred eEE-----EEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe---eecc----cCCCC-cccCCHHHHHHHHHHH
Q 045912 142 RAE-----FGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF---QVEE----FPLIP-AALDNDSLYLLVERVG 208 (218)
Q Consensus 142 ~a~-----~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~---~~~~----~~~~p-~~~~d~~l~~~l~~~~ 208 (218)
.+. .+++|...+.|-+--+-+.+.-..+ ++.+.-|+. +|.+ -..+. .+.|++++.+.+.++.
T Consensus 151 DVi~s~~GkTVEI~NTDAEGRLvLADaL~ya~~-----~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~~l~~~l~~ag 225 (311)
T PF00883_consen 151 DVITSMNGKTVEIGNTDAEGRLVLADALTYAQE-----YKPDLIIDIATLTGACVVALGSDYAGVFSNDDELAKQLQEAG 225 (311)
T ss_dssp EEEE-TTS-EEEES-TTGHHHHHHHHHHHHHHG-----GT-SEEEEEEE--HHHHHHHTTTSEEEEESSHHHHHHHHHHH
T ss_pred CEEEeCCCCEEEEEeeCcccceeehhHHHHHHh-----hCCceEEeehhhhhHHHeeECCceeeeecCCHHHHHHHHHHH
Confidence 543 5688888888876655555543322 444444443 1110 12232 3467899999998887
Q ss_pred HhhcCC
Q 045912 209 KSLLGP 214 (218)
Q Consensus 209 ~~~~G~ 214 (218)
+. .|+
T Consensus 226 ~~-~gE 230 (311)
T PF00883_consen 226 ER-SGE 230 (311)
T ss_dssp HH-HT-
T ss_pred Hh-cCC
Confidence 65 454
No 89
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=71.02 E-value=8.3 Score=30.86 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=28.9
Q ss_pred cEEEEEeeCCCCCccccCCCCccccCCCcccccCCc---HHHHHHHHHHHHHHhh
Q 045912 78 PFIALRADMDALPLQELVNWEHKSKIDGKMHACGHD---APTTMLLGEAKLLHRR 129 (218)
Q Consensus 78 ~~i~~~~h~D~vp~~~~~~~pf~~~~~g~~~~~G~d---~~~a~ll~aa~~L~~~ 129 (218)
|.|++.+.||+.-.= ++. +.|.| .++.++|++|++|.+.
T Consensus 1 ~iIlv~armDs~s~F-----------~~~--s~GA~s~~sglvaLLaaA~aL~~~ 42 (234)
T PF05450_consen 1 PIILVVARMDSFSFF-----------HDL--SPGADSSVSGLVALLAAAEALSKL 42 (234)
T ss_pred CEEEEEecccchhcc-----------cCC--CCCcccchHHHHHHHHHHHHHHHh
Confidence 689999999998421 022 34554 6888999999999876
No 90
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=68.98 E-value=41 Score=30.58 Aligned_cols=73 Identities=14% Similarity=-0.012 Sum_probs=47.4
Q ss_pred CCCccCCeEEEEEeEec-------------------CChHHHHHHHHHHHHHHHHHH--HHhCCeEEEEeeecccCCCCc
Q 045912 135 AADVISPRAEFGGTLRS-------------------LTTEGMYRLQKRLHNVVKQQA--AVHRCNAYVDFQVEEFPLIPA 193 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~-------------------~~~e~~~~l~~~i~~~~~~~a--~~~g~~~~i~~~~~~~~~~p~ 193 (218)
..+..|+-+.+..++|+ +..+.++.+.+-+.++.+++. +.+|+.+-+-. ..+ +
T Consensus 331 ~~gl~P~a~VlVaTvRALK~hGG~~~~~~g~pl~~~l~~en~~al~~G~~NL~~Hi~n~~~fg~pvVVai-----N~F-~ 404 (578)
T PRK13506 331 QSGKAPDCAVLVATLRALKANSGLYDLRPGQALPDSINAPDQARLEAGFANLKWHINNVAQYGLPVVVAI-----NRF-P 404 (578)
T ss_pred cCCCCCceEEEEEEeehHHhcCCCCCcccCcccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-----cCC-C
Confidence 67889999999999998 345677788876665555443 35788776655 222 2
Q ss_pred ccCCHHHHHHHHHHHHhhcCC
Q 045912 194 ALDNDSLYLLVERVGKSLLGP 214 (218)
Q Consensus 194 ~~~d~~l~~~l~~~~~~~~G~ 214 (218)
... ++-++.+++.|++..|.
T Consensus 405 ~Dt-~~Ei~~~~~~~~~~~~~ 424 (578)
T PRK13506 405 TDT-DEELEWLKEAVLLTGAF 424 (578)
T ss_pred CCC-HHHHHHHHHHHHHcCCC
Confidence 222 44456677777664443
No 91
>PF02909 TetR_C: Tetracyclin repressor, C-terminal all-alpha domain; InterPro: IPR004111 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in the tetracycline transcriptional repressor TetR, which binds to the Tet(A) gene to repress its expression in the absence of tetracycline []. Tet(A) is a membrane-associated efflux protein that exports tetracycline from the cell before it can attach to ribosomes and inhibit polypeptide chain growth. TetR occurs as a homodimer and uses two helix-turn-helix (HTH) motifs to bind tandem DNA operators, thereby blocking the expression of the associated genes, TetA and TetR. The structure of the class D TetR repressor protein [] involves 10 alpha-helices, with connecting turns and loops. The three N-terminal helices constitute the DNA-binding HTH domain, which has an inverse orientation compared with HTH motifs in other DNA-binding proteins. The core of the protein, formed by helices 5-10, is responsible for dimerisation and contains, for each monomer, a binding pocket that accommodates tetracycline in the presence of a divalent cation.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 2Y30_B 3ZQL_C 2Y31_B 2Y2Z_A 2VPR_A 3B6A_A 3B6C_A 2OPT_A 2NS7_B 2NS8_C ....
Probab=67.95 E-value=15 Score=26.15 Aligned_cols=56 Identities=7% Similarity=0.065 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHHHHhHHHHH---HHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCcee
Q 045912 5 LDEAFADQILIETERDKNWLI---SIRRQIHENPELRFEVHNTNALIRSELDKLGITYS 60 (218)
Q Consensus 5 ~~~~~~~~i~~~i~~~~~~~~---~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~ 60 (218)
++++|++++..+.....+-+. .+..-+...|..+.......+.+...|.+.||+..
T Consensus 4 ~~~~W~~~l~~~a~~~r~~~~~hP~~~~~~~~~~~~~p~~l~~~e~~l~~L~~aG~~~~ 62 (139)
T PF02909_consen 4 PGDDWRERLRALARAYRAALLRHPWLAELLLARPPPGPNALRLMEAMLRALRDAGFSPE 62 (139)
T ss_dssp TTSEHHHHHHHHHHHHHHHHHTSTTHHHHHHTSSCTSHHHHHHHHHHHHHHHHTTEEHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHhcCCCChhHHHHHHHHHHHHHHcCcCHH
Confidence 344899999988877666543 12333444444556778889999999999999854
No 92
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=62.32 E-value=11 Score=32.03 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=22.5
Q ss_pred CCCcccccCCc--HHHHHHHHHHHHHHhhc
Q 045912 103 IDGKMHACGHD--APTTMLLGEAKLLHRRK 130 (218)
Q Consensus 103 ~~g~~~~~G~d--~~~a~ll~aa~~L~~~~ 130 (218)
.+|+++|++.| +++++++.+++.|++..
T Consensus 173 ~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~ 202 (343)
T TIGR03106 173 ANGFIVSRHLDDKAGVAALLAALKAIVEHK 202 (343)
T ss_pred cCCEEEEEecccHHhHHHHHHHHHHHHhcC
Confidence 45788877754 89999999999998654
No 93
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=57.33 E-value=1.1e+02 Score=29.22 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCccc-cCCCCcccc
Q 045912 37 LRFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQE-LVNWEHKSK 102 (218)
Q Consensus 37 ~~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~-~~~~pf~~~ 102 (218)
.++...+.+++++..|+.+|+.- .. .|.|+|.|| |. ..++||.+-
T Consensus 475 ~g~t~~e~~~~ae~~Lr~mGLt~--~F-------------AplVvl~GH------GS~s~NNP~~aa 520 (788)
T PF10070_consen 475 IGFTLEEQADLAEGALRSMGLTE--NF-------------APLVVLVGH------GSSSTNNPHAAA 520 (788)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcc--CC-------------CCeEEEecC------CCCCCCChhhhh
Confidence 45667788999999999999851 11 389999999 43 357899874
No 94
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=56.35 E-value=31 Score=25.74 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=35.3
Q ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh--cCCce
Q 045912 2 PYSLDEAFADQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDK--LGITY 59 (218)
Q Consensus 2 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~--~G~~~ 59 (218)
||+++|- ..-|..||..+.+++-++...-...--.+..|.-.-..+....++ .||.+
T Consensus 65 ~~t~~e~-~~lI~~yl~R~DeEleql~~~rR~gRp~s~re~~L~~~~~~E~~ey~~G~~v 123 (155)
T PF11176_consen 65 PFTLEEI-HELIERYLHRFDEELEQLKKERRKGRPPSNREDLLEQKIEREEEEYKTGFEV 123 (155)
T ss_dssp ---HHHH-HHHHHHHHHHHHHHHHHHHHHGGGT---TTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred CCCHHHH-HHHHHHHHhcCHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCeeC
Confidence 5666554 677888999999999888887444434566676655555555444 48865
No 95
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=55.96 E-value=7.2 Score=29.27 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=26.8
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHhcCCceeec
Q 045912 30 QIHENPELRFEVHNTNALIRSELDKLGITYSCP 62 (218)
Q Consensus 30 ~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~~ 62 (218)
.|+-..+-.|+-+++|++|+..|++.|++|...
T Consensus 3 ~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~ 35 (175)
T COG4635 3 TLILYSTRDGQTRKIAEYIASHLRESGIQVDIQ 35 (175)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhhcCCeeeee
Confidence 345555667889999999999999999998753
No 96
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=53.54 E-value=91 Score=23.16 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=36.4
Q ss_pred eEEEEEeEecCC----------hHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccC-CCCcccCCHHHHHHHHHHHHh
Q 045912 142 RAEFGGTLRSLT----------TEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFP-LIPAALDNDSLYLLVERVGKS 210 (218)
Q Consensus 142 ~a~~~~diR~~~----------~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~-~~p~~~~d~~l~~~l~~~~~~ 210 (218)
...+.+++|+.+ +..+..+...|++.+++.-..=.+++.+++.. .. .......|.++++.+.++.+.
T Consensus 16 ~~~~~vEikSvN~R~Ldi~~rlP~~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~--~~~~~~~~~in~~l~~~y~~~l~~ 93 (159)
T PF03755_consen 16 GGSISVEIKSVNHRFLDISIRLPRELSSLEPEIRKLIRKKLSRGKVEVSIRVER--SSESAVELRINEELAKAYYEALKE 93 (159)
T ss_pred CeEEEEEEEecccCceeeEEeCCHHHHHHHHHHHHHHHHhcccceEEEEEEEEE--CcccCCCcccCHHHHHHHHHHHHH
Confidence 356666666654 34556788888888876543222344444411 12 223444577666665555443
No 97
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=48.52 E-value=35 Score=29.63 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 045912 114 APTTMLLGEAKLLHRRK 130 (218)
Q Consensus 114 ~~~a~ll~aa~~L~~~~ 130 (218)
.++|++|..|+.|+...
T Consensus 231 sGva~llEiAr~l~~~~ 247 (435)
T COG2234 231 SGVAALLELARVLKGNP 247 (435)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 68999999999999765
No 98
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.70 E-value=89 Score=29.04 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCCCcccc-CCCCcccc
Q 045912 38 RFEVHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDALPLQEL-VNWEHKSK 102 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~vp~~~~-~~~pf~~~ 102 (218)
++.+.+-+++..+.||-+|+.... .|-+++.|| |.. .+.||++-
T Consensus 538 GFT~~Eq~~~a~qaLKmmgLte~f---------------Ap~Vvl~GH------gSqS~NNPy~aa 582 (880)
T COG3002 538 GFTLDEQAQMAAQALKMMGLTEEF---------------APLVVLVGH------GSQSQNNPYRAA 582 (880)
T ss_pred CCchHHHHHHHHHHHHHhCchhhh---------------CceEEEecc------ccccCCCchhhh
Confidence 455667788888888888885321 277888888 443 46888874
No 99
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=46.24 E-value=59 Score=23.88 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceee
Q 045912 23 WLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 23 ~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
.+++.+....+. +.+..|+.|.+.|.+.|+.++-
T Consensus 114 ~Ll~~R~~aR~~-----Kdf~~AD~IRd~L~~~Gi~i~D 147 (156)
T cd07963 114 ALIAQRNQARKA-----KDWAEADRIRDELAAQGIILED 147 (156)
T ss_pred HHHHHHHHHHHh-----cCHHHHHHHHHHHHHCCcEEEE
Confidence 344444444433 5688999999999999999864
No 100
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=45.31 E-value=84 Score=26.27 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHhcCCceee
Q 045912 38 RFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
|+.|.-.+..++.+|++.|+....
T Consensus 130 s~GE~lSa~l~a~~L~~~Gi~a~~ 153 (306)
T cd04247 130 STGEKLSCRFMAAVLRDRGVDAEY 153 (306)
T ss_pred hHHHHHHHHHHHHHHHhCCCCeEE
Confidence 567888899999999999998764
No 101
>PF03682 UPF0158: Uncharacterised protein family (UPF0158); InterPro: IPR005361 This is a small family of hypothetical bacterial proteins of unknown function.
Probab=43.41 E-value=33 Score=25.76 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHhCCCC-----CCChHHHHHHHHHHHHhcCCcee
Q 045912 6 DEAFADQILIETERDKNWLISIRRQIHENPEL-----RFEVHNTNALIRSELDKLGITYS 60 (218)
Q Consensus 6 ~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~-----~~~E~~~a~~i~~~L~~~G~~~~ 60 (218)
|...+.++...|.. +.-...+-..|...|+. .+++.....++.+||+++|++..
T Consensus 84 d~~l~~~L~~ai~g-rgafrrFKd~L~~~~~~~e~Wy~F~~~~~r~~a~eWleen~I~~~ 142 (163)
T PF03682_consen 84 DPDLRERLLRAIQG-RGAFRRFKDILSEYPELRERWYAFREERLRERAIEWLEENGIEPV 142 (163)
T ss_pred CHHHHHHHHHHHhC-CcHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 33344455555543 22233444446677765 46788889999999999999843
No 102
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=42.96 E-value=71 Score=21.09 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Q 045912 22 NWLISIRRQIHENPELRFEVHNTNALIRSELDKL 55 (218)
Q Consensus 22 ~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~ 55 (218)
++++++.++..+. ...|.++|++|++.|.+.
T Consensus 19 ~~~~~~~~~a~~~---~~~~~eiA~~iK~~lD~~ 49 (89)
T PF01221_consen 19 EEAIELAKEALKK---YQDEKEIAEFIKQELDKK 49 (89)
T ss_dssp HHHHHHHHHHHHH---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CCcHHHHHHHHHHHHhcc
Confidence 3444444444332 126788999999999885
No 103
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=42.15 E-value=28 Score=26.79 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCCCChHH-----HHHHHHHHHHhcCCce
Q 045912 24 LISIRRQIHENPELRFEVHN-----TNALIRSELDKLGITY 59 (218)
Q Consensus 24 ~~~~~~~L~~~pe~~~~E~~-----~a~~i~~~L~~~G~~~ 59 (218)
..+|+..|+..+|-+|.+.. ++..|...|+++|+..
T Consensus 119 T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI~s 159 (184)
T PF12307_consen 119 TADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGIRS 159 (184)
T ss_pred HHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCCCC
Confidence 46888999999999998887 7999999999999864
No 104
>PRK02813 putative aminopeptidase 2; Provisional
Probab=42.14 E-value=1.3e+02 Score=26.46 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHHHHhcCCce-ee------cC--------CCceEEEEe-cCCC---CcEEEEEeeCCCCC
Q 045912 38 RFEVHNTNALIRSELDKLGITY-SC------PL--------VKTGIVAKI-GSGS---HPFIALRADMDALP 90 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~-~~------~~--------~~~~via~~-~~~~---~~~i~~~~h~D~vp 90 (218)
+.-++.+.+++.+.|++.||.- .. .. .+..++|-. |+.. ...-++.||+|..-
T Consensus 18 s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP~ 89 (428)
T PRK02813 18 SPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSPG 89 (428)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCCC
Confidence 5578999999999999999962 11 11 124566654 4332 13568899999864
No 105
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=41.75 E-value=53 Score=18.60 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCCCCCh--------HHHHHHHHHHHHhcCC
Q 045912 25 ISIRRQIHENPELRFEV--------HNTNALIRSELDKLGI 57 (218)
Q Consensus 25 ~~~~~~L~~~pe~~~~E--------~~~a~~i~~~L~~~G~ 57 (218)
.+++..|.+.|..+..| ..+..+..+.|.+.|+
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~ 46 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGL 46 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcC
Confidence 34556666777766544 5667777777777775
No 106
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=39.88 E-value=61 Score=30.44 Aligned_cols=49 Identities=24% Similarity=0.370 Sum_probs=33.7
Q ss_pred ceEEEEecC-C-CCcEEEEEeeCCCCCccccCCCCccccCCCcccccCCcHHHHHHHHHHHHHHhhc
Q 045912 66 TGIVAKIGS-G-SHPFIALRADMDALPLQELVNWEHKSKIDGKMHACGHDAPTTMLLGEAKLLHRRK 130 (218)
Q Consensus 66 ~~via~~~~-~-~~~~i~~~~h~D~vp~~~~~~~pf~~~~~g~~~~~G~d~~~a~ll~aa~~L~~~~ 130 (218)
.|++|+|.| . +...|++-+|-|+.-.| +-.-..|+|.|+..++.+....
T Consensus 339 ~NIig~I~Gs~epD~~ViigahrDSw~~G----------------a~dp~sGta~Ll~i~~~~~~~~ 389 (702)
T KOG2195|consen 339 QNIIGKIEGSEEPDRYVIIGAHRDSWTFG----------------AIDPNSGTALLLEIARALSKLK 389 (702)
T ss_pred eeEEEEEecCcCCCeEEEEeccccccccC----------------CcCCCccHHHHHHHHHHHHHHH
Confidence 589999966 3 34789999999998532 1111245777888888777543
No 107
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=39.42 E-value=1.8e+02 Score=22.46 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHH--------------HHHHHHHHHhcCCc
Q 045912 11 DQILIETERDKNWLISIRRQIHENPELRFEVHNT--------------NALIRSELDKLGIT 58 (218)
Q Consensus 11 ~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~--------------a~~i~~~L~~~G~~ 58 (218)
....-.-++.+.+.++.++.+++.|..+..+++- -..|...|+..||+
T Consensus 89 ~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llkakGf~ 150 (196)
T PF12685_consen 89 AEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKAKGFE 150 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444455667778999999999999988765433 33456667777775
No 108
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=37.49 E-value=57 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=6.8
Q ss_pred HHHHHHHHHhcCCce
Q 045912 45 NALIRSELDKLGITY 59 (218)
Q Consensus 45 a~~i~~~L~~~G~~~ 59 (218)
++-|.+.|++.||++
T Consensus 22 Q~eL~~~L~~~Gi~v 36 (70)
T PF01316_consen 22 QEELVELLEEEGIEV 36 (70)
T ss_dssp HHHHHHHHHHTT-T-
T ss_pred HHHHHHHHHHcCCCc
Confidence 344555555555554
No 109
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.96 E-value=1.1e+02 Score=19.23 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=37.6
Q ss_pred CCc--HHHHHHHHHHHHHHhhcccCC--CCCccCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Q 045912 111 GHD--APTTMLLGEAKLLHRRKDQLN--AADVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVD 182 (218)
Q Consensus 111 G~d--~~~a~ll~aa~~L~~~~~~~~--~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~ 182 (218)
|.| |.++.+ .+.|.+.+..+. ...+..+.-.+.+.+........+.+.+.++.+++ ..++++.++
T Consensus 6 G~DrpGiv~~v---t~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~----~l~l~i~~~ 74 (75)
T cd04870 6 GPDRPGLTSAL---TEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH----ELGLQVRFE 74 (75)
T ss_pred cCCCCCHHHHH---HHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH----HcCceEEEe
Confidence 444 445543 456666654322 34555666777777776655566777777666654 446666553
No 110
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=36.12 E-value=2.1e+02 Score=25.90 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=46.6
Q ss_pred CCCccCCeEEEEEeEecC-----------C-hHHHHHHHHHHHHHHHHHH--HHhCCeEEEEeeecccCCCCcccCCHHH
Q 045912 135 AADVISPRAEFGGTLRSL-----------T-TEGMYRLQKRLHNVVKQQA--AVHRCNAYVDFQVEEFPLIPAALDNDSL 200 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~-----------~-~e~~~~l~~~i~~~~~~~a--~~~g~~~~i~~~~~~~~~~p~~~~d~~l 200 (218)
..+..|+-+.+..++|++ . .+.++.+++-+.++.+++. +.+|+.+-+-. ..+ +... ++-
T Consensus 301 ~~gl~P~a~VlVaTvRALK~hGG~~~~~l~~~en~~al~~G~~NL~~Hi~n~~~fg~p~VVai-----N~F-~~Dt-~~E 373 (524)
T cd00477 301 YSGLKPDAVVLVATVRALKMHGGVPKVTLGLEENLEALEKGFANLRKHIENIKKFGVPVVVAI-----NKF-STDT-DAE 373 (524)
T ss_pred cCCCCCCEEEEEEehHHHHHhCCCCcccCCCccCHHHHHhHHHHHHHHHHHHHHcCCCeEEEe-----cCC-CCCC-HHH
Confidence 678999999999999975 2 5677778777776666553 35788776655 223 2333 344
Q ss_pred HHHHHHHHHh
Q 045912 201 YLLVERVGKS 210 (218)
Q Consensus 201 ~~~l~~~~~~ 210 (218)
++.+++.|++
T Consensus 374 i~~v~~~~~~ 383 (524)
T cd00477 374 LALVRKLAEE 383 (524)
T ss_pred HHHHHHHHHH
Confidence 5667777765
No 111
>PRK02256 putative aminopeptidase 1; Provisional
Probab=33.52 E-value=3.2e+02 Score=24.34 Aligned_cols=55 Identities=9% Similarity=0.015 Sum_probs=35.8
Q ss_pred CCCCChHHHHHHHHHHHHhcCCce-ee----cC--------CCceEEEEe-cCCC-C-cEEEEEeeCCCCC
Q 045912 36 ELRFEVHNTNALIRSELDKLGITY-SC----PL--------VKTGIVAKI-GSGS-H-PFIALRADMDALP 90 (218)
Q Consensus 36 e~~~~E~~~a~~i~~~L~~~G~~~-~~----~~--------~~~~via~~-~~~~-~-~~i~~~~h~D~vp 90 (218)
.-+.-++.+.+++++.|++.||.- .. .. .++.++|-. |+.. + ..-+..||.|.--
T Consensus 36 ~~sptp~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP~ 106 (462)
T PRK02256 36 SKCKTEREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSPR 106 (462)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCCC
Confidence 335578999999999999999962 11 11 124566654 4332 1 2457899999864
No 112
>COG5482 Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=88 Score=24.02 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeC
Q 045912 42 HNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADM 86 (218)
Q Consensus 42 ~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~ 86 (218)
.....=+.+||++.||-|.-..++-.++|.-++ + |.|++.+++
T Consensus 4 tsly~Pvk~Fle~~gyvVkgEv~gCD~val~~d-~-p~vvvicEL 46 (229)
T COG5482 4 TSLYLPVKGFLEKAGYVVKGEVGGCDLVALSDD-D-PPVVVICEL 46 (229)
T ss_pred ccccchHHHHhhcCCeEEecccCCceEEEEcCC-C-CCEEEEEEe
Confidence 334455789999999987655556667776443 3 666666665
No 113
>PRK05406 LamB/YcsF family protein; Provisional
Probab=32.82 E-value=2.2e+02 Score=23.11 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=53.9
Q ss_pred cccC-CcHHHHHHHHHHHHHHhhcccCCCCCccCCeEEEEEeEecC---ChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Q 045912 108 HACG-HDAPTTMLLGEAKLLHRRKDQLNAADVISPRAEFGGTLRSL---TTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF 183 (218)
Q Consensus 108 ~~~G-~d~~~a~ll~aa~~L~~~~~~~~~~NvIPd~a~~~~diR~~---~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~ 183 (218)
=+|| |=|--..|--+.+..++.+....+.=-.||..-|- +|.. +.|..+.+..+|.. ++++++..|+++..--
T Consensus 34 IACG~HAGDp~~M~~tv~lA~~~gV~IGAHPgypD~~gFG--RR~m~~s~~el~~~v~yQigA-L~~~a~~~g~~l~hVK 110 (246)
T PRK05406 34 IACGFHAGDPAVMRRTVRLAKENGVAIGAHPGYPDLEGFG--RRNMDLSPEELYALVLYQIGA-LQAIARAAGGRVSHVK 110 (246)
T ss_pred HhccccCCCHHHHHHHHHHHHHcCCeEccCCCCCccCCCC--CCCCCCCHHHHHHHHHHHHHH-HHHHHHHcCCeeEEeC
Confidence 3676 53434445555565566554444444566655443 4433 34444445555443 4567777787765322
Q ss_pred eecccCCCCcccCCHHHHHHHHHHHHhh
Q 045912 184 QVEEFPLIPAALDNDSLYLLVERVGKSL 211 (218)
Q Consensus 184 ~~~~~~~~p~~~~d~~l~~~l~~~~~~~ 211 (218)
.. -.-|.-...|+++.+.+.++++++
T Consensus 111 PH--GALYN~~~~d~~~a~av~~ai~~~ 136 (246)
T PRK05406 111 PH--GALYNMAAKDPALADAVAEAVAAV 136 (246)
T ss_pred cc--HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 00 012334556889988888877654
No 114
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=32.58 E-value=83 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 045912 3 YSLDEAFADQILIETERDKNWLISIRRQIHENPEL 37 (218)
Q Consensus 3 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~ 37 (218)
|+..|+|+.-+.++++++.+.+.+++.++...|++
T Consensus 226 f~~KE~~M~~ln~Fi~~~~~~~~~FL~~is~v~d~ 260 (315)
T cd05391 226 FGAKEPYMEGVNPFIKSNKHRMIMFLDELGNVPEL 260 (315)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 45578999999999999999999999999988775
No 115
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=32.39 E-value=2.2e+02 Score=23.53 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.0
Q ss_pred CCChHHHHHHHHHHHHhcCCceeecCCCc
Q 045912 38 RFEVHNTNALIRSELDKLGITYSCPLVKT 66 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~~~~~~ 66 (218)
++.|.-.+..++.+|++.|++...-..+.
T Consensus 122 s~GE~lSa~lla~~L~~~Gi~a~~ld~~~ 150 (294)
T cd04257 122 SFGERLSARLLSALLNQQGLDAAWIDARE 150 (294)
T ss_pred eHHHHHHHHHHHHHHHhCCCCeEEEchHH
Confidence 56799999999999999999876533333
No 116
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=32.26 E-value=1e+02 Score=20.23 Aligned_cols=59 Identities=5% Similarity=0.019 Sum_probs=35.8
Q ss_pred eEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccCCCCcccCCHHHHHHHH
Q 045912 142 RAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYVDFQVEEFPLIPAALDNDSLYLLVE 205 (218)
Q Consensus 142 ~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~ 205 (218)
+.++.+-||..++-...++.+.|.+-++-.+. .+.+.+..+....+++. +|..+-..+.
T Consensus 8 ~f~~tIaIrvp~~~~y~~L~~ki~~kLkl~~e----~i~LsYkde~s~~~v~l-~d~dle~aws 66 (80)
T cd06406 8 HFKYTVAIQVARGLSYATLLQKISSKLELPAE----HITLSYKSEASGEDVIL-SDTNMEDVWS 66 (80)
T ss_pred EEEEEEEEEcCCCCCHHHHHHHHHHHhCCCch----hcEEEeccCCCCCccCc-ChHHHHHHHH
Confidence 34567889999999999999998887764322 23344411102234455 6666655544
No 117
>PRK05066 arginine repressor; Provisional
Probab=31.69 E-value=62 Score=24.17 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCc-ee
Q 045912 21 KNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGIT-YS 60 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~-~~ 60 (218)
+....+..++|++.-++ .+++-|.+.|++.||+ +.
T Consensus 7 k~~r~~~I~~iI~~~~I-----~tQeeL~~~L~~~Gi~~vT 42 (156)
T PRK05066 7 QEELVKAFKALLKEEKF-----GSQGEIVTALQEQGFDNIN 42 (156)
T ss_pred HHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHCCCCeec
Confidence 33445666677766444 4455577788888887 64
No 118
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=30.98 E-value=45 Score=23.30 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHhCCC----CCCChHHHHHHHHHHHHhcCCcee
Q 045912 31 IHENPE----LRFEVHNTNALIRSELDKLGITYS 60 (218)
Q Consensus 31 L~~~pe----~~~~E~~~a~~i~~~L~~~G~~~~ 60 (218)
.|++|+ +|..+...++.|.+.++.+|+++-
T Consensus 66 ~HNHPsG~~~PS~~D~~~T~~l~~~~~~l~i~ll 99 (113)
T cd08071 66 AHNHPSGDPTPSREDIELTKRLKEAGELLGIRLL 99 (113)
T ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 367776 455678889999999999999853
No 119
>PRK06291 aspartate kinase; Provisional
Probab=30.76 E-value=1.8e+02 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.4
Q ss_pred CCChHHHHHHHHHHHHhcCCceee
Q 045912 38 RFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
+..|.-.+..+..+|++.|++...
T Consensus 127 s~GE~~Sa~l~~~~L~~~Gi~a~~ 150 (465)
T PRK06291 127 SFGERLSAPILSGALRDLGIKSVA 150 (465)
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEE
Confidence 567888999999999999998653
No 120
>PRK12569 hypothetical protein; Provisional
Probab=30.65 E-value=2.9e+02 Score=22.34 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=54.7
Q ss_pred cccC-CcHHHHHHHHHHHHHHhhcccCCCCCccCCeEEEEEeEecC---ChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Q 045912 108 HACG-HDAPTTMLLGEAKLLHRRKDQLNAADVISPRAEFGGTLRSL---TTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF 183 (218)
Q Consensus 108 ~~~G-~d~~~a~ll~aa~~L~~~~~~~~~~NvIPd~a~~~~diR~~---~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~ 183 (218)
-+|| |=|--..|--+.++-++.+....+.=..||..-|- +|.. +.|..+.+..+|.. ++.+++..|+++..--
T Consensus 37 IACG~HAGDp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFG--Rr~m~~s~~el~~~v~yQiga-L~~~~~~~g~~l~hVK 113 (245)
T PRK12569 37 IATGFHAGDPNIMRRTVELAKAHGVGIGAHPGFRDLVGFG--RRHINASPQELVNDVLYQLGA-LREFARAHGVRLQHVK 113 (245)
T ss_pred HhccccCCCHHHHHHHHHHHHHcCCEeccCCCCCcCCCCC--CCCCCCCHHHHHHHHHHHHHH-HHHHHHHcCCeeEEec
Confidence 3676 53434445555666666555444444567765443 3433 34455555555544 4567777787764321
Q ss_pred eecccCCCCcccCCHHHHHHHHHHHHhh
Q 045912 184 QVEEFPLIPAALDNDSLYLLVERVGKSL 211 (218)
Q Consensus 184 ~~~~~~~~p~~~~d~~l~~~l~~~~~~~ 211 (218)
.. -.-|.-...|+++.+.+.++++++
T Consensus 114 PH--GALYN~~~~d~~la~av~~ai~~~ 139 (245)
T PRK12569 114 PH--GALYMHAARDEALARLLVEALARL 139 (245)
T ss_pred CC--HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 00 012344556889999888877654
No 121
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=30.22 E-value=2.1e+02 Score=21.07 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=25.8
Q ss_pred CccCCeEEEEEeEecCChHHHHHHHHHHHHHHHH
Q 045912 137 DVISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQ 170 (218)
Q Consensus 137 NvIPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~ 170 (218)
++-.+.+.+.+.+=+......+.+.+.+++.++.
T Consensus 21 ~v~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~ 54 (146)
T TIGR02159 21 DVDGGGVVVKFTPTYSGCPALEVIRQDIRDAVRA 54 (146)
T ss_pred EEECCEEEEEEEeCCCCCchHHHHHHHHHHHHHh
Confidence 4445677888888777777888888888888765
No 122
>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species. It is usually found repeated. The function of these proteins is not known.
Probab=29.89 E-value=8.3 Score=23.62 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=9.4
Q ss_pred EEeeCCCCCccc
Q 045912 82 LRADMDALPLQE 93 (218)
Q Consensus 82 ~~~h~D~vp~~~ 93 (218)
+|+|+|+|+..+
T Consensus 6 vR~HLD~vy~~~ 17 (58)
T PF07577_consen 6 VRAHLDVVYDQD 17 (58)
T ss_pred HHHHhhceecCC
Confidence 578999998543
No 123
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=29.84 E-value=39 Score=21.89 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=17.7
Q ss_pred CceEEEEecCCCCcEEEEEeeCCCC
Q 045912 65 KTGIVAKIGSGSHPFIALRADMDAL 89 (218)
Q Consensus 65 ~~~via~~~~~~~~~i~~~~h~D~v 89 (218)
.|.+=|.+.+. +.++++.|+|--
T Consensus 49 ~TSiPA~ldgk--~~lLyr~hYD~q 71 (80)
T PF07351_consen 49 HTSIPAILDGK--PSLLYRQHYDKQ 71 (80)
T ss_pred CCccceEECCc--eeeeeehhcccc
Confidence 46777877653 789999999853
No 124
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.72 E-value=84 Score=21.16 Aligned_cols=30 Identities=30% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCceeecCCCceEEEEecCC
Q 045912 44 TNALIRSELDKLGITYSCPLVKTGIVAKIGSG 75 (218)
Q Consensus 44 ~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~ 75 (218)
..+.|.+.|.++|+.++.. +.=|++.+++.
T Consensus 13 ~~dri~~~l~e~g~~v~~e--GD~ivas~pgi 42 (96)
T COG4004 13 DPDRIMRGLSELGWTVSEE--GDRIVASSPGI 42 (96)
T ss_pred CHHHHHHHHHHhCeeEeec--ccEEEEecCCc
Confidence 4788999999999988764 23577777653
No 125
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=29.40 E-value=4.5e+02 Score=24.11 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCCccCCeEEEEEeEecC-----------ChHHHHHHHHHHHHHHHHH--HHHhCCeEEEEeeecccCCCCcccCCHHHH
Q 045912 135 AADVISPRAEFGGTLRSL-----------TTEGMYRLQKRLHNVVKQQ--AAVHRCNAYVDFQVEEFPLIPAALDNDSLY 201 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~-----------~~e~~~~l~~~i~~~~~~~--a~~~g~~~~i~~~~~~~~~~p~~~~d~~l~ 201 (218)
..+..|+-+.+..++|++ ..+.++.+.+-+.++-+.+ .+.+|+.+-+-. ..++ . +.++-+
T Consensus 318 ~~gl~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAI-----NKFd-~-DTe~Ei 390 (557)
T PRK13505 318 KAGLKPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAI-----NKFV-T-DTDAEI 390 (557)
T ss_pred cCCCCCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEE-----eCCC-C-CCHHHH
Confidence 678889999999999976 3456666665555554433 345788776654 2221 1 223466
Q ss_pred HHHHHHHHh
Q 045912 202 LLVERVGKS 210 (218)
Q Consensus 202 ~~l~~~~~~ 210 (218)
+.+++.|++
T Consensus 391 ~~I~~~c~e 399 (557)
T PRK13505 391 AALKELCEE 399 (557)
T ss_pred HHHHHHHHH
Confidence 777777765
No 126
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.27 E-value=1.8e+02 Score=19.54 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=38.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCce
Q 045912 13 ILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITY 59 (218)
Q Consensus 13 i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~ 59 (218)
....-++..++.+.+++++++=-+++.+=++.|+-..+.|.+.|-+.
T Consensus 7 ~~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p 53 (93)
T COG1698 7 LMNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESP 53 (93)
T ss_pred chhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCc
Confidence 34445566778899999999888999999999999999999988653
No 127
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=28.73 E-value=3.5e+02 Score=24.14 Aligned_cols=53 Identities=19% Similarity=0.088 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHHhcCCce-ee------cCC--------CceEEEEe-cCCC----CcEEEEEeeCCCCC
Q 045912 38 RFEVHNTNALIRSELDKLGITY-SC------PLV--------KTGIVAKI-GSGS----HPFIALRADMDALP 90 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~-~~------~~~--------~~~via~~-~~~~----~~~i~~~~h~D~vp 90 (218)
+.-++.+.+++.+.|++.||.- .. ..+ +..++|-. |+.. ...-+.-+|.|.--
T Consensus 19 s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDsP~ 91 (465)
T PTZ00371 19 TGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDSPC 91 (465)
T ss_pred CCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccCCC
Confidence 5678999999999999999962 21 111 23566654 4331 13567889999753
No 128
>PF09518 RE_HindIII: HindIII restriction endonuclease; InterPro: IPR019043 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the HindIII restriction endonuclease which recognises and cleaves A^AGCTT. ; PDB: 3A4K_A 2E52_B.
Probab=28.60 E-value=3.1e+02 Score=22.95 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=37.7
Q ss_pred CCCchHHH-HHHHHHHHHh-HHHHHHHHHHHHhCCCC----CCChH----HHHHHHHHHHHhcCCcee
Q 045912 3 YSLDEAFA-DQILIETERD-KNWLISIRRQIHENPEL----RFEVH----NTNALIRSELDKLGITYS 60 (218)
Q Consensus 3 ~~~~~~~~-~~i~~~i~~~-~~~~~~~~~~L~~~pe~----~~~E~----~~a~~i~~~L~~~G~~~~ 60 (218)
+.+|-+-. .++.+.|++. .+.++++++..-.|||. |.+|. -+=..+..++..+|++..
T Consensus 19 ~~~d~~~~~~el~~~i~k~~~~~~i~~L~~~G~IPE~y~~dSSeEkLySK~~D~lla~~~~~mg~~s~ 86 (311)
T PF09518_consen 19 FTLDFERVSNELEAEIKKCSRKDFIEHLRLCGYIPEIYKHDSSEEKLYSKYTDALLAEWFQEMGLNSK 86 (311)
T ss_dssp -TS-HHHHHHHHHHHHHTS-HHHHHHHHHHHTEE-TTS-TTSHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred ccccHHHHHHHHHHHHHHhCHHHHHHHHHHhCCCccccCCCccHHHHHHHHHHHHHHHHHHHcCchhH
Confidence 34444433 3577777664 56899999999999996 33452 234456778999999854
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=27.99 E-value=2e+02 Score=24.29 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=28.1
Q ss_pred HhCCeEEEEeeecccCCCCcccCCHHHHHHHHHHHHhhcCCCC
Q 045912 174 VHRCNAYVDFQVEEFPLIPAALDNDSLYLLVERVGKSLLGPEN 216 (218)
Q Consensus 174 ~~g~~~~i~~~~~~~~~~p~~~~d~~l~~~l~~~~~~~~G~~~ 216 (218)
..+-.++|-. ..+||+ +++.-++.+.+++++++|.++
T Consensus 171 ~~~~~v~ii~----PlsYp~--gn~~Yi~~V~~~~~~lF~~~~ 207 (322)
T PRK02797 171 QFGDNVKIIV----PMGYPA--NNQAYIEEVRQAGLALFGAEN 207 (322)
T ss_pred HhCCCeEEEE----ECCcCC--CCHHHHHHHHHHHHHhcCccc
Confidence 4466677776 566765 568889999999999999655
No 130
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=27.97 E-value=44 Score=28.95 Aligned_cols=57 Identities=18% Similarity=0.010 Sum_probs=36.9
Q ss_pred CCCCCChH---HHHHHHHHHHHhcCCceeecCCCceEEEEecCC-CCcEEEEEeeCCCCCc
Q 045912 35 PELRFEVH---NTNALIRSELDKLGITYSCPLVKTGIVAKIGSG-SHPFIALRADMDALPL 91 (218)
Q Consensus 35 pe~~~~E~---~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~-~~~~i~~~~h~D~vp~ 91 (218)
.|+|.+.+ ..|..|+.||.+-=|-.+...+.+|.+..+... .+=.=++.|++|.+|.
T Consensus 386 dELseedk~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE 446 (468)
T COG0055 386 DELSEEDKLTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPE 446 (468)
T ss_pred hhcChhHHHHHHHHHHHHHHhcCcchhhheecCCCceeeeHHHHHHHHHHHhCCCcccCCH
Confidence 45665554 458899999987654444555667888877431 1211257899999994
No 131
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=27.52 E-value=1e+02 Score=27.98 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=39.9
Q ss_pred CCCccCCeEEEEEeEecC-----------ChHHHHHHHHHHHHHHHHHHH--HhCCeEEEEeeecccCCCCcccCCHHHH
Q 045912 135 AADVISPRAEFGGTLRSL-----------TTEGMYRLQKRLHNVVKQQAA--VHRCNAYVDFQVEEFPLIPAALDNDSLY 201 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~-----------~~e~~~~l~~~i~~~~~~~a~--~~g~~~~i~~~~~~~~~~p~~~~d~~l~ 201 (218)
..+..|+-+.+..++|++ ..+.++.+++-+.++.+++.. .+|+.+-+-. ..+ +... ++-+
T Consensus 317 ~~gl~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAI-----N~F-~tDT-~aEi 389 (557)
T PF01268_consen 317 KSGLKPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAI-----NRF-PTDT-DAEI 389 (557)
T ss_dssp HHT---SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEE-----E---TTS--HHHH
T ss_pred hcccCcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----cCC-CCCC-HHHH
Confidence 568889999999999875 467778888877777776643 4677766554 112 2222 3445
Q ss_pred HHHHHHHHh
Q 045912 202 LLVERVGKS 210 (218)
Q Consensus 202 ~~l~~~~~~ 210 (218)
+.+++.|++
T Consensus 390 ~~I~~~~~~ 398 (557)
T PF01268_consen 390 ELIRELCEE 398 (557)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHHHh
Confidence 777776654
No 132
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=27.25 E-value=89 Score=26.82 Aligned_cols=36 Identities=19% Similarity=0.062 Sum_probs=28.5
Q ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 045912 2 PYSLDEAFADQILIETERDKNWLISIRRQIHENPEL 37 (218)
Q Consensus 2 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~ 37 (218)
+|.-+++|+.-+..+|.+..+.+.+++.+++..|++
T Consensus 228 ~f~~~e~~m~pLN~fI~~~~~~~~~fl~~~~~V~d~ 263 (360)
T cd05133 228 MFLGDNAHLSIINEYLSQSYQKFRRFFQSACEVPEL 263 (360)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 455566788888888888888888888888888764
No 133
>PRK04280 arginine repressor; Provisional
Probab=27.18 E-value=83 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceee
Q 045912 26 SIRRQIHENPELRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 26 ~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
++.++|++.-+ ..+++-|.+.|++.||++..
T Consensus 7 ~~I~~iI~~~~-----I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 7 IKIREIITNNE-----IETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred HHHHHHHHhCC-----CCCHHHHHHHHHHcCCCeeh
Confidence 34455555533 34455677788888888653
No 134
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=27.05 E-value=3.4e+02 Score=21.92 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=55.2
Q ss_pred cccC-CcHHHHHHHHHHHHHHhhcccCCCCCccCCeEEEEEeEecC---ChHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Q 045912 108 HACG-HDAPTTMLLGEAKLLHRRKDQLNAADVISPRAEFGGTLRSL---TTEGMYRLQKRLHNVVKQQAAVHRCNAYVDF 183 (218)
Q Consensus 108 ~~~G-~d~~~a~ll~aa~~L~~~~~~~~~~NvIPd~a~~~~diR~~---~~e~~~~l~~~i~~~~~~~a~~~g~~~~i~~ 183 (218)
-+|| |-|--..|--+.++-++++..+.+.--.||..-|- .|.. ++|....+.=+|- .++.+++..|.++..--
T Consensus 34 IACGfHAGDp~~M~rtV~lA~e~gV~IGAHPgyPDl~gFG--Rr~m~~~~~e~~a~~lYQiG-AL~a~~~a~G~~~~hVK 110 (252)
T COG1540 34 IACGFHAGDPLTMRRTVRLAKENGVAIGAHPGYPDLVGFG--RREMALSPEELYAQVLYQIG-ALQAFARAQGGVVQHVK 110 (252)
T ss_pred HhhcccCCCHHHHHHHHHHHHHcCCeeccCCCCccccccC--ccccCCCHHHHHHHHHHHHH-HHHHHHHhcCCeEEEec
Confidence 4677 43444555566676666665444555677766554 3432 3444444444443 34567777787765322
Q ss_pred eecccCCCCcccCCHHHHHHHHHHHHh
Q 045912 184 QVEEFPLIPAALDNDSLYLLVERVGKS 210 (218)
Q Consensus 184 ~~~~~~~~p~~~~d~~l~~~l~~~~~~ 210 (218)
.. -.-|.-...|+.+.+.+.+++..
T Consensus 111 pH--GALYN~~a~D~~la~av~~av~~ 135 (252)
T COG1540 111 PH--GALYNQAAKDRALADAVAEAVAA 135 (252)
T ss_pred cc--HHHHHHhhcCHHHHHHHHHHHHH
Confidence 00 11234445688998888887765
No 135
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=26.82 E-value=87 Score=15.02 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=16.6
Q ss_pred HHHhCCCC-CCChHHHHHHHHHHHHhcCCc
Q 045912 30 QIHENPEL-RFEVHNTNALIRSELDKLGIT 58 (218)
Q Consensus 30 ~L~~~pe~-~~~E~~~a~~i~~~L~~~G~~ 58 (218)
-+.++|.+ +.. .+.-.--.++|+++|++
T Consensus 3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 3 ILKKFPQILGYS-EKKLKPKVEFLKELGFS 31 (31)
T ss_pred hhhhCcCccccc-HHHhhHHHHHHHHcCCC
Confidence 35677876 344 44444456677788873
No 136
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.61 E-value=26 Score=30.05 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHHhcCCceeec---------CCCceEEEEecCCCCcEEEEEeeCCCCCccccCCCCcc
Q 045912 38 RFEVHNTNALIRSELDKLGITYSCP---------LVKTGIVAKIGSGSHPFIALRADMDALPLQELVNWEHK 100 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~~---------~~~~~via~~~~~~~~~i~~~~h~D~vp~~~~~~~pf~ 100 (218)
+|..-..+.|+.+.|+++|+.--.+ ..+.++++.-..|+|++.+|..|+ ...++.+|+.
T Consensus 8 ~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPi----l~rLsedP~g 75 (442)
T KOG0340|consen 8 PFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPI----LNRLSEDPYG 75 (442)
T ss_pred chhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHH----HHhhccCCCc
Confidence 4666778899999999999863221 124566766666778999997554 2345667754
No 137
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=26.49 E-value=2.9e+02 Score=22.79 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCceeecCCCceEEEEecCC-----CCcEEEEEeeCCCCCccccCCCCccccCCCcccccCCcHHH
Q 045912 42 HNTNALIRSELDKLGITYSCPLVKTGIVAKIGSG-----SHPFIALRADMDALPLQELVNWEHKSKIDGKMHACGHDAPT 116 (218)
Q Consensus 42 ~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~-----~~~~i~~~~h~D~vp~~~~~~~pf~~~~~g~~~~~G~d~~~ 116 (218)
++.+..+.+.+++.-+.+.......--|+++.+- +--.|++.||+|.=-+. .+ ..|.+||| -+
T Consensus 89 rqla~~v~~vve~~r~~l~lGGDHSlAIGTvsgva~~~~D~gvlWvDAHaDinTp~-------ts-~SgNLHG~----Pv 156 (318)
T KOG2965|consen 89 RQLANEVSQVVENGRILLVLGGDHSLAIGTVSGVARVYPDAGVLWVDAHADINTPD-------TS-PSGNLHGC----PV 156 (318)
T ss_pred HHHHHHHHHHHhcCeEEEEecCcceEEEeeehhhHhhCCCccEEEEecccccCCCC-------CC-CCCCcCCC----cH
Confidence 4555556666555444443322223357777431 12479999999986321 11 12678998 34
Q ss_pred HHHHHHHHHHHhhcccCC--CCCccCCeEEEEEeEecCChHHHHH
Q 045912 117 TMLLGEAKLLHRRKDQLN--AADVISPRAEFGGTLRSLTTEGMYR 159 (218)
Q Consensus 117 a~ll~aa~~L~~~~~~~~--~~NvIPd~a~~~~diR~~~~e~~~~ 159 (218)
+.+|+-++ .....+. .+++-|-+ -..+-+|..+.....-
T Consensus 157 SflLg~~~---p~~~~f~w~~p~i~~~~-l~yIGLRDvdp~E~~i 197 (318)
T KOG2965|consen 157 SFLLGELK---PLPEGFSWVKPCISPKR-LAYIGLRDVDPGEHAI 197 (318)
T ss_pred HHHHhccC---CCCccccccccccChhh-eEEEecccCChHHHHH
Confidence 55554333 1111122 34444433 3344466666544443
No 138
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=26.00 E-value=97 Score=26.33 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCC
Q 045912 5 LDEAFADQILIETERDKNWLISIRRQIHENPELR 38 (218)
Q Consensus 5 ~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~ 38 (218)
-.|+|+.-+.++|+++.+.+.+++.+|.+.|+..
T Consensus 254 ~KE~~M~plN~FI~~~~~~~~~FL~~i~~v~~~e 287 (337)
T cd05395 254 AKEPWMVPLQPAIQQGITQLKDFITRLVNCEESE 287 (337)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 4789999999999999999999999999998753
No 139
>TIGR02678 conserved hypothetical protein TIGR02678. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=25.98 E-value=3.3e+02 Score=23.54 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCCCCchHHHHHHHHHHHHhHHHHHH-HHHHHHhCCCCCCChHHHHHHHHHHHHhcCCc
Q 045912 1 GPYSLDEAFADQILIETERDKNWLIS-IRRQIHENPELRFEVHNTNALIRSELDKLGIT 58 (218)
Q Consensus 1 ~~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~ 58 (218)
|+||++.....++...+...+.+.-. +.|.. .+.+ .+.+.++-+.++|+++|+-
T Consensus 297 ~~~~~~~~~~~e~~~~l~~~~~~~~~~W~K~~---~e~~-~~~~L~~~vl~~L~~~~l~ 351 (375)
T TIGR02678 297 GRWPADADTLGELEAELADERTRHGPGWGKAY---RDPS-AEAELVTVALSELLRLGLA 351 (375)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhhhhhhc---ccCC-hHHHHHHHHHHHHHHcCCc
Confidence 45666665455555555444333221 11222 2222 4778899999999999983
No 140
>PTZ00059 dynein light chain; Provisional
Probab=25.93 E-value=1.9e+02 Score=19.18 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHHHhc
Q 045912 40 EVHNTNALIRSELDKL 55 (218)
Q Consensus 40 ~E~~~a~~i~~~L~~~ 55 (218)
.|.++|.+|++.|.+.
T Consensus 35 ~~kdiA~~IK~~fD~~ 50 (90)
T PTZ00059 35 IEKDIAAYIKKEFDKK 50 (90)
T ss_pred chHHHHHHHHHHHHhh
Confidence 3788999999999885
No 141
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=25.85 E-value=2e+02 Score=25.54 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceee
Q 045912 21 KNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 21 ~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
.+.+++.+.+.-+. +.+..|+.|.+.|.++|+.++-
T Consensus 418 ~~~li~~R~~aR~~-----Kdf~~AD~IRd~L~~~Gi~v~D 453 (463)
T PRK00260 418 IEALIEERQEARKA-----KDFALADAIRDELAALGIVLED 453 (463)
T ss_pred HHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHCCcEEEE
Confidence 33455555555443 5689999999999999998864
No 142
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=25.84 E-value=1e+02 Score=17.98 Aligned_cols=38 Identities=8% Similarity=0.209 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Q 045912 17 TERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLG 56 (218)
Q Consensus 17 i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G 56 (218)
+...+....+++.++-+++ +.+..+..+.|.+.|...|
T Consensus 17 l~~~r~~a~~l~~~~N~~~--~~d~~~r~~llk~l~g~~G 54 (55)
T PF12464_consen 17 LQEIRARAKRLLQRYNQTP--PEDPEERQELLKELFGSVG 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHSH--TTTHHHHHHHHHHHSSBES
T ss_pred HHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhhcC
Confidence 4445555566666666665 2245566677777665544
No 143
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=25.83 E-value=1.3e+02 Score=25.14 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCC
Q 045912 2 PYSLDEAFADQILIETERDKNWLISIRRQIHENPELR 38 (218)
Q Consensus 2 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~ 38 (218)
+|+-.|+|+.-+..+++++.+.+.+++.++...|+..
T Consensus 224 ~f~~KE~~M~~ln~fi~~~~~~~~~fL~~is~v~~~~ 260 (309)
T cd05136 224 KFGGKEEYMEFMNDFLEREWGRMKDFLLEISNPDTIS 260 (309)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 4556789999999999999999999999999888753
No 144
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=25.71 E-value=2e+02 Score=18.74 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=24.7
Q ss_pred cCCeEEEEEeEecCChHHHHHHHHHHHHHHHHHHHHhCCeEEE
Q 045912 139 ISPRAEFGGTLRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYV 181 (218)
Q Consensus 139 IPd~a~~~~diR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i 181 (218)
-|....+.+++|..+ ...+.+++.+.++. ...|+.+.+
T Consensus 45 ~~~~~~~e~~v~~~~-~~~~~lr~~L~~la----~elgvDIav 82 (84)
T cd04871 45 DSPKACVEFSVRGQP-ADLEALRAALLELA----SELNVDIAF 82 (84)
T ss_pred CCCcEEEEEEEeCCC-CCHHHHHHHHHHHh----cccCceEEE
Confidence 346778999999555 57777777766543 344655544
No 145
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=25.64 E-value=2.3e+02 Score=24.18 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=35.0
Q ss_pred HHHhHHHHHHHHHHHHhCCCCCCCh--HHHHHHHHHHHHhcCCceee
Q 045912 17 TERDKNWLISIRRQIHENPELRFEV--HNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 17 i~~~~~~~~~~~~~L~~~pe~~~~E--~~~a~~i~~~L~~~G~~~~~ 61 (218)
.++....++++....+.+.+-+..| .+.-+.+.+|++++|...+.
T Consensus 294 ~~~k~~k~~q~a~rV~gi~~g~~~e~i~~~I~ktr~ff~slGv~trl 340 (384)
T COG1979 294 LDQKRAKLLQYAERVWGITEGSDDEIIDEAIAKTREFFESLGVPTRL 340 (384)
T ss_pred HhhcHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHcCCccch
Confidence 3455778899999999998765555 35577888999999998654
No 146
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=25.61 E-value=1.7e+02 Score=19.37 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=24.5
Q ss_pred EecCChHHHHHHHHHHHHHHHHHHHHhCCeEEE
Q 045912 149 LRSLTTEGMYRLQKRLHNVVKQQAAVHRCNAYV 181 (218)
Q Consensus 149 iR~~~~e~~~~l~~~i~~~~~~~a~~~g~~~~i 181 (218)
|+-...-..+++.+++++.+...+..++++++.
T Consensus 3 I~r~H~Lg~~eAr~~~~~~~~~l~~~~~~~~~W 35 (87)
T PF09650_consen 3 IERPHSLGREEARRRAEELAEKLAEEYGVECTW 35 (87)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 444455567888899999999998888876544
No 147
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.13 E-value=2e+02 Score=25.63 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceee
Q 045912 19 RDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 19 ~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
+.-+.+++.+.++.+. +-...|+.|.+.|.+.|+.++-
T Consensus 417 ~~i~~Li~~R~~aR~~-----K~~~~AD~iRd~L~~~Gi~leD 454 (464)
T COG0215 417 EEIEALIEERLEARKA-----KNWALADEIRDELLALGIILED 454 (464)
T ss_pred HHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHCCcEEEE
Confidence 3444555656555554 5678899999999999998764
No 148
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=24.96 E-value=93 Score=22.09 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=26.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhc
Q 045912 14 LIETERDKNWLISIRRQIHENPE-LRFEVHNTNALIRSELDKL 55 (218)
Q Consensus 14 ~~~i~~~~~~~~~~~~~L~~~pe-~~~~E~~~a~~i~~~L~~~ 55 (218)
.+.+++.+..+-+.++.|.++|. ++..+ .+.++|+..
T Consensus 81 ~~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~-----~v~~Fl~~~ 118 (123)
T cd06882 81 AEIAERRIPLLNRYMKELLSLPVWVLMDE-----DVRLFFYQT 118 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhcCCH-----HHHHHhCCC
Confidence 37788888899999999999986 55443 255555543
No 149
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=24.94 E-value=1.3e+02 Score=22.80 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCceee
Q 045912 26 SIRRQIHENPELRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 26 ~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
+|..+|..-++.+..|.-..+-=...|.++||+|..
T Consensus 2 ~LW~elt~~e~~~~~e~~ri~~ri~rLN~LGFdV~E 37 (165)
T PF13224_consen 2 QLWDELTREEVFSPDERWRIEERIRRLNELGFDVGE 37 (165)
T ss_pred chHHHhhcCCCCCchHHHHHHHHHHHHHhcCCceee
Confidence 366788888888888864444444578999999753
No 150
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=24.74 E-value=1.2e+02 Score=21.37 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=20.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCceeec
Q 045912 37 LRFEVHNTNALIRSELDKLGITYSCP 62 (218)
Q Consensus 37 ~~~~E~~~a~~i~~~L~~~G~~~~~~ 62 (218)
++..|.....-..+.|+++||+.+..
T Consensus 61 l~~~e~~~l~~~~~~l~~~Gf~~~~~ 86 (136)
T smart00853 61 LSPEEAALLEEHQELLARLGFELEIF 86 (136)
T ss_pred cCHHHHHHHHHHHHHHHHcCeEEEcc
Confidence 45667777777788999999998653
No 151
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=24.70 E-value=5.2e+02 Score=23.26 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=48.5
Q ss_pred CCCccCCeEEEEEeEecC-----------ChHHHHHHHHHHHHHHHHHH--HHhCCeEEEEeeecccCCCCcccCCHHHH
Q 045912 135 AADVISPRAEFGGTLRSL-----------TTEGMYRLQKRLHNVVKQQA--AVHRCNAYVDFQVEEFPLIPAALDNDSLY 201 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~-----------~~e~~~~l~~~i~~~~~~~a--~~~g~~~~i~~~~~~~~~~p~~~~d~~l~ 201 (218)
..+..||-+.+..++|.+ ..|..+.+++-+.++.+++. +.+|+.+-+-. ..++ +.. +.-+
T Consensus 315 ~~gl~PdavVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAI-----N~F~-tDt-~~Ei 387 (554)
T COG2759 315 SSGLKPDAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAI-----NKFP-TDT-EAEI 387 (554)
T ss_pred ccCCCCCeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-----ccCC-CCC-HHHH
Confidence 578899999999999974 45666777777777776654 36787776654 2232 333 3445
Q ss_pred HHHHHHHHhhcCCC
Q 045912 202 LLVERVGKSLLGPE 215 (218)
Q Consensus 202 ~~l~~~~~~~~G~~ 215 (218)
+.+++.+.+ .|.+
T Consensus 388 ~~i~~~~~~-~gv~ 400 (554)
T COG2759 388 AAIEKLCEE-HGVE 400 (554)
T ss_pred HHHHHHHHH-cCCc
Confidence 666777765 3544
No 152
>PF11757 RSS_P20: Suppressor of RNA silencing P21-like; InterPro: IPR021742 This is a large family of putative suppressors of RNA silencing proteins, P20-P25, from ssRNA positive-strand viruses such as Closterovirus, Potyvirus and Cucumovirus families. RNA silencing is one of the major mechanisms of defence against viruses, and, in response, some viruses have evolved or acquired functions for suppression of RNA silencing. These counter-defencive viral proteins with RNA silencing suppressor (RSS) activity were originally discovered in the members of plant virus genera Potyvirus and Cucumovirus. Each of the conserved blocks of amino acids found in P21-like proteins corresponds to a computer-predicted alpha-helix, with the most C-terminal element being 42 residues long. This suggests conservation of the predominantly alpha-helical secondary structure in the P21-like proteins.
Probab=24.68 E-value=2.3e+02 Score=20.63 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHhc
Q 045912 10 ADQILIETERDKNWLISIRRQIHENPELRFEV-HNTNALIRSELDKL 55 (218)
Q Consensus 10 ~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E-~~~a~~i~~~L~~~ 55 (218)
+.+++..++++-..+..++|..+--.+++-.+ .++-.|+..+.-++
T Consensus 48 K~~ll~tiE~~lr~~~~~lRr~vv~~~L~~~S~~dlv~Ff~~ky~~l 94 (137)
T PF11757_consen 48 KKRLLCTIEANLREALDLLRRKVVRDKLGIRSPKDLVAFFVKKYSEL 94 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhc
Confidence 66777777777777666666655544454444 55555555554443
No 153
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=24.25 E-value=1.3e+02 Score=26.15 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=18.7
Q ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Q 045912 3 YSLDEAFADQILIETERDKNWLISIRRQIHENP 35 (218)
Q Consensus 3 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~p 35 (218)
|+..|+|+..+.++++++.+.+.+++.++...|
T Consensus 300 f~~KE~~M~~lN~Fi~~~~~~~~~FL~~is~v~ 332 (395)
T cd05137 300 FGKKEPWMEPMNPFIEKHRQELKDYIDKICSIK 332 (395)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555666666666666666655555555444
No 154
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=23.92 E-value=96 Score=22.24 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=19.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCceee
Q 045912 37 LRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 37 ~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
++..|.....-..+.|+++||+++.
T Consensus 60 ls~~e~~~l~~~~~~L~~~Gf~~~~ 84 (144)
T PF08676_consen 60 LSPQEAELLEENKEELEKLGFEIEE 84 (144)
T ss_dssp --HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4567888888899999999999875
No 155
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=23.87 E-value=2.9e+02 Score=22.88 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHHhcCCceee
Q 045912 38 RFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
+..|.-.+..++.+|++.|+....
T Consensus 123 s~GE~lSa~lla~~L~~~Gi~a~~ 146 (298)
T cd04244 123 SFGERLSAPIFSAALRSLGIKARA 146 (298)
T ss_pred cHhHHHHHHHHHHHHHhCCCCeEE
Confidence 567899999999999999998654
No 156
>PF10195 Phospho_p8: DNA-binding nuclear phosphoprotein p8; InterPro: IPR018792 P8 is a short 80-82 amino acid protein that is conserved from nematodes to humans. It carries at least one protein kinase C domain suggesting a possible role in signal transduction and it is thought to be a phosphoprotein, but the sites of phosphorylation and the kinases involved remain to be determined [].
Probab=23.70 E-value=99 Score=19.09 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=15.9
Q ss_pred HHHh-CCCCCCChHHHHHHHHH
Q 045912 30 QIHE-NPELRFEVHNTNALIRS 50 (218)
Q Consensus 30 ~L~~-~pe~~~~E~~~a~~i~~ 50 (218)
.+|. .+.|+++|+++...+.+
T Consensus 34 ~~htnr~~P~Gh~RKiv~kl~N 55 (60)
T PF10195_consen 34 AEHTNRPSPGGHERKIVTKLQN 55 (60)
T ss_pred HHhcCCCCCCchHHHHHHHHHh
Confidence 3444 77889999999887764
No 157
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=23.67 E-value=4e+02 Score=21.62 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhcCCceeecCCCceEEEEecCCCCcEEEEEeeCCCC
Q 045912 24 LISIRRQIHENPELRFE-VHNTNALIRSELDKLGITYSCPLVKTGIVAKIGSGSHPFIALRADMDAL 89 (218)
Q Consensus 24 ~~~~~~~L~~~pe~~~~-E~~~a~~i~~~L~~~G~~~~~~~~~~~via~~~~~~~~~i~~~~h~D~v 89 (218)
.-.+..-+.++|.-+-+ -..-++-|.+.+++.||.. ...+..+|-.+-.......+|.||.=++
T Consensus 128 ~~~F~~lFs~i~t~~t~D~~~h~~~i~k~wk~rgi~F--~~~k~slISV~~h~~d~~~lFvGH~GVL 192 (250)
T PF14133_consen 128 KEKFTTLFSRIPTENTKDIKVHAEKIQKYWKERGIKF--NNDKASLISVFLHDPDDNSLFVGHTGVL 192 (250)
T ss_pred HHHHHHHhCcCCccccCCHHHHHHHHHHHHHHcCcee--CCCceEEEEEEEEcCCCCeEEeeeEEEE
Confidence 33444445567765443 3456888999999999987 2335566666632234568899998776
No 158
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=23.44 E-value=1.3e+02 Score=20.72 Aligned_cols=27 Identities=7% Similarity=-0.161 Sum_probs=19.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhCCCCCCC
Q 045912 14 LIETERDKNWLISIRRQIHENPELRFE 40 (218)
Q Consensus 14 ~~~i~~~~~~~~~~~~~L~~~pe~~~~ 40 (218)
.+.|++.+..+-++++.|.++|++...
T Consensus 71 ~~fie~Rr~~Le~yL~~l~~~p~i~~s 97 (107)
T cd06872 71 GAFIEERCKLLDKYLKDLLVIEKVAES 97 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhcC
Confidence 456777777788888888888876543
No 159
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=23.21 E-value=1.4e+02 Score=25.27 Aligned_cols=36 Identities=6% Similarity=-0.017 Sum_probs=28.7
Q ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 045912 2 PYSLDEAFADQILIETERDKNWLISIRRQIHENPEL 37 (218)
Q Consensus 2 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~ 37 (218)
+|.-.++|+.-+..+|.+..+.+-+++.++...|++
T Consensus 228 ~F~~~e~~m~pLN~fi~~~~~~~~~fl~~l~~V~d~ 263 (339)
T cd05131 228 LFEGENDHLSSMNSYLSQTYQKFRKFFQAACDVPEP 263 (339)
T ss_pred CCCCcChHHHhHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 455556788888888888888888888888888864
No 160
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.10 E-value=1.3e+02 Score=18.30 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCceee
Q 045912 43 NTNALIRSELDKLGITYSC 61 (218)
Q Consensus 43 ~~a~~i~~~L~~~G~~~~~ 61 (218)
--+..|++.|++.|+++..
T Consensus 10 ~ea~~i~~~L~~~gI~~~v 28 (67)
T PF09413_consen 10 IEAELIKGLLEENGIPAFV 28 (67)
T ss_dssp HHHHHHHHHHHHTT--EE-
T ss_pred HHHHHHHHHHHhCCCcEEE
Confidence 3478999999999999764
No 161
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.01 E-value=1.1e+02 Score=21.47 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHHHHhcCCceee
Q 045912 36 ELRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 36 e~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
|.+++-++.|+.|++.|++.|+++..
T Consensus 7 S~tGnT~~~A~~i~~~~~~~g~~v~~ 32 (140)
T TIGR01753 7 SMTGNTEEMANIIAEGLKEAGAEVDL 32 (140)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 66889999999999999999988754
No 162
>COG1438 ArgR Arginine repressor [Transcription]
Probab=23.01 E-value=1.1e+02 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=18.3
Q ss_pred CCCccCCeEEEEEeEecCChHHHHHHHHHHHH
Q 045912 135 AADVISPRAEFGGTLRSLTTEGMYRLQKRLHN 166 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~~~e~~~~l~~~i~~ 166 (218)
-..+|++.-++.+-.|+.. ..+.+.+++.+
T Consensus 119 IlGTIaGdDTilVi~r~~~--~a~~l~~~l~~ 148 (150)
T COG1438 119 ILGTIAGDDTILVICRSEE--TAKELYEELLN 148 (150)
T ss_pred hheeeeCCCeEEEEecCch--hHHHHHHHHHh
Confidence 4567777777777777644 44455555443
No 163
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=22.99 E-value=4.2e+02 Score=24.59 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=45.7
Q ss_pred CCCccCCeEEEEEeEecC-----------ChHHHHHHHHHHHHHHHHHH--HHhCCeEEEEeeecccCCCCcccCCHHHH
Q 045912 135 AADVISPRAEFGGTLRSL-----------TTEGMYRLQKRLHNVVKQQA--AVHRCNAYVDFQVEEFPLIPAALDNDSLY 201 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~-----------~~e~~~~l~~~i~~~~~~~a--~~~g~~~~i~~~~~~~~~~p~~~~d~~l~ 201 (218)
..+..|+-+.+..++|++ ..+.++.+++-+.++.+++. +.+|+.+-+-. ..+ ++.. ++-+
T Consensus 383 ~sgl~P~a~VlVaTvRALK~hGG~~~~~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAI-----N~F-~tDT-~~Ei 455 (625)
T PTZ00386 383 TSGLKPDAAVLVATVRALKFHGGVEPVVAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVAL-----NKF-STDT-DAEL 455 (625)
T ss_pred ccCCCcCEEEEEeehHHHHHhCCCCccccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-----cCC-CCCC-HHHH
Confidence 678889999999999986 24778888866666665543 35788876655 222 2222 4445
Q ss_pred HHHHHHHH
Q 045912 202 LLVERVGK 209 (218)
Q Consensus 202 ~~l~~~~~ 209 (218)
+.+++.++
T Consensus 456 ~~i~~~~~ 463 (625)
T PTZ00386 456 ELVKELAL 463 (625)
T ss_pred HHHHHHHH
Confidence 66777776
No 164
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=22.65 E-value=43 Score=23.76 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=20.8
Q ss_pred HhCCC----CCCChHHHHHHHHHHHHhcCCcee
Q 045912 32 HENPE----LRFEVHNTNALIRSELDKLGITYS 60 (218)
Q Consensus 32 ~~~pe----~~~~E~~~a~~i~~~L~~~G~~~~ 60 (218)
|++|+ +|.+....++.|.+.++.+|+++.
T Consensus 72 HNHPsG~~~PS~~D~~~T~~L~~~~~~l~I~ll 104 (123)
T PF04002_consen 72 HNHPSGDPEPSDADIALTRRLKKAARLLGIELL 104 (123)
T ss_dssp EE-TTS--S--HHHHHHHHHHHHHHHHHT-EEE
T ss_pred EEcCCCCCCCCHhHHHHHHHHHHHHHHcCCeee
Confidence 56775 456678899999999999999864
No 165
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=22.62 E-value=2.1e+02 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHHhcCCceee
Q 045912 40 EVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 40 ~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
+++..|+.|.+.|.++|+.++-
T Consensus 459 kdf~~AD~iR~~L~~~Gi~l~D 480 (490)
T PRK14536 459 KDFPLADEIRDKLKAEGIELED 480 (490)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 5688999999999999998864
No 166
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=22.58 E-value=83 Score=21.12 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHHHHhcCCceee
Q 045912 38 RFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
..++..|+.|+++.+++.|+++..
T Consensus 10 ~~ED~~t~~yL~~~a~qaG~~~~~ 33 (97)
T PF03738_consen 10 YPEDRGTVQYLMDTARQAGLDTRF 33 (97)
T ss_dssp -HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred ChHHHHHHHHHHHHHHHCCCCeEE
Confidence 346789999999999999998653
No 167
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=22.53 E-value=1.7e+02 Score=21.20 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCc-eeecCCCceEEEE
Q 045912 37 LRFEVHNTNALIRSELDKLGIT-YSCPLVKTGIVAK 71 (218)
Q Consensus 37 ~~~~E~~~a~~i~~~L~~~G~~-~~~~~~~~~via~ 71 (218)
++++-+=..+-|++.|+++||. |++.....|++..
T Consensus 13 VGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~ 48 (137)
T PF08002_consen 13 VGGKNKIKMAELREALEDLGFTNVRTYIQSGNVVFE 48 (137)
T ss_dssp BTTBS---HHHHHHHHHHCT-EEEEEETTTTEEEEE
T ss_pred cCCCCcccHHHHHHHHHHcCCCCceEEEeeCCEEEe
Confidence 3454444467788999999997 6655555677665
No 168
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=22.50 E-value=4.9e+02 Score=23.94 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCCccCCeEEEEEeEecC-------------------ChHHHHHHHHHHHHHHHHHH--HHhCCeEEEEeeecccCCCCc
Q 045912 135 AADVISPRAEFGGTLRSL-------------------TTEGMYRLQKRLHNVVKQQA--AVHRCNAYVDFQVEEFPLIPA 193 (218)
Q Consensus 135 ~~NvIPd~a~~~~diR~~-------------------~~e~~~~l~~~i~~~~~~~a--~~~g~~~~i~~~~~~~~~~p~ 193 (218)
..+..|+-+.+..++|++ ..+.++.+.+-+.++.+++. +.+|+.+-+-. ..+ +
T Consensus 339 ~~gl~P~a~VlVaTvRALK~hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVai-----N~F-~ 412 (587)
T PRK13507 339 LSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPVVCI-----NAF-Y 412 (587)
T ss_pred ccCCCCCEEEEEeEhHHHHHcCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-----CCC-C
Confidence 568889999999999976 25667777766666655543 35788876655 222 2
Q ss_pred ccCCHHHHHHHHHHHHh
Q 045912 194 ALDNDSLYLLVERVGKS 210 (218)
Q Consensus 194 ~~~d~~l~~~l~~~~~~ 210 (218)
...+ +-++.+++.+++
T Consensus 413 ~Dt~-~Ei~~l~~~~~~ 428 (587)
T PRK13507 413 TDTH-AEIAIVRRLAEQ 428 (587)
T ss_pred CCCH-HHHHHHHHHHHH
Confidence 2333 335556666654
No 169
>PRK09271 flavodoxin; Provisional
Probab=22.28 E-value=1.1e+02 Score=22.57 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.7
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCcee
Q 045912 35 PELRFEVHNTNALIRSELDKLGITYS 60 (218)
Q Consensus 35 pe~~~~E~~~a~~i~~~L~~~G~~~~ 60 (218)
-|.+++-++.|+.|++.|+..|++++
T Consensus 8 ~S~tGnTe~~A~~ia~~l~~~g~~v~ 33 (160)
T PRK09271 8 ASLSGNTREVAREIEERCEEAGHEVD 33 (160)
T ss_pred EcCCchHHHHHHHHHHHHHhCCCeeE
Confidence 36678899999999999999999865
No 170
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=22.23 E-value=1.1e+02 Score=21.76 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCceee
Q 045912 36 ELRFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 36 e~~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
|.+++-++.|+.|++.|++.|++++.
T Consensus 5 S~tG~te~~A~~ia~~l~~~g~~~~~ 30 (143)
T PF00258_consen 5 SMTGNTEKMAEAIAEGLRERGVEVRV 30 (143)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCchhHHHHHHHHHHHHHHcCCceee
Confidence 56778889999999999999997654
No 171
>PRK14343 lipoate-protein ligase B; Provisional
Probab=22.15 E-value=3.5e+02 Score=21.76 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCceeecCCCceEEEE
Q 045912 46 ALIRSELDKLGITYSCPLVKTGIVAK 71 (218)
Q Consensus 46 ~~i~~~L~~~G~~~~~~~~~~~via~ 71 (218)
+.+.+.|+++|++..+..+.+||+..
T Consensus 117 ~~vI~~l~~~gi~~~~~~~~~GVwv~ 142 (235)
T PRK14343 117 QAVIDTLAAYNLASERKAGAPGIYVA 142 (235)
T ss_pred HHHHHHHHHcCCceeecCCCCeEEEe
Confidence 45556788889987666667787664
No 172
>PF11313 DUF3116: Protein of unknown function (DUF3116); InterPro: IPR021464 This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=21.54 E-value=2.6e+02 Score=18.62 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCCcee
Q 045912 5 LDEAFADQILIETERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLGITYS 60 (218)
Q Consensus 5 ~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G~~~~ 60 (218)
|++..--+|+..+++...-+-.+..++.++|....--+.=--+..=||+..||=.+
T Consensus 4 p~~~~I~~iL~~~~~~~~~i~~L~~e~~~~~~~~~~TKNelL~~vYWLE~ngyI~R 59 (85)
T PF11313_consen 4 PSEELIYQILNFVKDPNATINHLTFEFIDFPGAYDFTKNELLYTVYWLEENGYIFR 59 (85)
T ss_pred ccHHHHHHHHHHhcCccccHHHHHHHHHhccccccccHHHHHHHHHHHhhcCeeEe
Confidence 55666667888888888888999999999987643222222334448999998443
No 173
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=21.40 E-value=99 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCceee
Q 045912 42 HNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 42 ~~~a~~i~~~L~~~G~~~~~ 61 (218)
..||-||.+.|+.+|+.+.+
T Consensus 150 eaTA~YI~~~l~~~~ikvtR 169 (198)
T COG0353 150 EATALYIARLLKPLGLKVTR 169 (198)
T ss_pred hHHHHHHHHHHhhcCCeEEE
Confidence 67899999999999999876
No 174
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=21.39 E-value=1.8e+02 Score=19.99 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHHHHhcCCce
Q 045912 38 RFEVHNTNALIRSELDKLGITY 59 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~ 59 (218)
-++-.+.|.-|+++|++.|++-
T Consensus 18 ~~qC~~cA~Al~~~L~~~gI~G 39 (100)
T PF15643_consen 18 IFQCVECASALKQFLKQAGIPG 39 (100)
T ss_pred ceehHHHHHHHHHHHHHCCCCc
Confidence 4677899999999999999873
No 175
>TIGR03424 urea_degr_1 urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=21.36 E-value=2.4e+02 Score=21.95 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCceeecCCCceE-----------EEEec--CCCCcEEEEEeeCCCCCc
Q 045912 43 NTNALIRSELDKLGITYSCPLVKTGI-----------VAKIG--SGSHPFIALRADMDALPL 91 (218)
Q Consensus 43 ~~a~~i~~~L~~~G~~~~~~~~~~~v-----------ia~~~--~~~~~~i~~~~h~D~vp~ 91 (218)
...+-+...|.++|+........-|| +.... ...|-.|.|+++||+|-+
T Consensus 113 ~c~dN~~~al~~~Gl~~rdi~~~iN~Fm~v~v~~dG~l~~~~~~s~~Gd~V~LrAemDllv~ 174 (198)
T TIGR03424 113 ACRDNFLLAIAKYGLGKRDIVSNINFFMNVPVTPDGSLTIVDGISAPGKYVELRAEMDVLVL 174 (198)
T ss_pred cHHHHHHHHHHHhCCCccccCCcEeeeeecccCCCCCEEEcCCCCCCCCEEEEEEccceEEE
Confidence 45566666778889864321111122 21121 134678999999999853
No 176
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=4.3e+02 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=19.3
Q ss_pred cEEEEEeeCCCCCccccCCCCccccCCCcccccCC
Q 045912 78 PFIALRADMDALPLQELVNWEHKSKIDGKMHACGH 112 (218)
Q Consensus 78 ~~i~~~~h~D~vp~~~~~~~pf~~~~~g~~~~~G~ 112 (218)
+.|++.+|+|+=...--...-|- .|.+|..||
T Consensus 38 rnigiiahidagktttterily~---ag~~~s~g~ 69 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYL---AGAIHSAGD 69 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHH---hhhhhcccc
Confidence 46899999998653211111111 277788898
No 177
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=21.24 E-value=1.8e+02 Score=18.26 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=22.6
Q ss_pred HHHHHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 045912 15 IETERDKNWLISIRRQIHENPELRFEVHNTNALIRS 50 (218)
Q Consensus 15 ~~i~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~ 50 (218)
+..+..++.+.+.+|-|-..--|+++|+-....+..
T Consensus 6 ~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aKi~~ 41 (65)
T COG2443 6 DKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITG 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344444455556666666666788999877665543
No 178
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=21.19 E-value=52 Score=21.93 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=21.6
Q ss_pred CCCCchHH--HHHHHHHHHHhHHHHHHHHHHHHh
Q 045912 2 PYSLDEAF--ADQILIETERDKNWLISIRRQIHE 33 (218)
Q Consensus 2 ~~~~~~~~--~~~i~~~i~~~~~~~~~~~~~L~~ 33 (218)
|||+++.. -..|...-.+.++.+|++.+++.+
T Consensus 49 ~~~~~eVtq~p~LV~qMT~~EKEaYi~v~Q~~f~ 82 (86)
T PF11521_consen 49 PYPYSEVTQRPELVAQMTPEEKEAYIQVGQEMFS 82 (86)
T ss_dssp EEEHHHHHH-HHHHHHS-HHHHHHHHHHHHHHCS
T ss_pred EeehhhcCcchHHHHHcCHHHHHHHHHHHHHHHH
Confidence 67888876 345555556667778888888754
No 179
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=21.01 E-value=1e+02 Score=17.14 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=7.1
Q ss_pred CCCCchHHHHHHHHH
Q 045912 2 PYSLDEAFADQILIE 16 (218)
Q Consensus 2 ~~~~~~~~~~~i~~~ 16 (218)
|||-++. +.++...
T Consensus 9 PYPs~~e-k~~L~~~ 22 (40)
T PF05920_consen 9 PYPSKEE-KEELAKQ 22 (40)
T ss_dssp GS--HHH-HHHHHHH
T ss_pred CCCCHHH-HHHHHHH
Confidence 7887766 5555443
No 180
>PRK09084 aspartate kinase III; Validated
Probab=21.00 E-value=2.7e+02 Score=24.61 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHHHHhcCCceee
Q 045912 38 RFEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
+..|.-.+..+..+|++.|++...
T Consensus 114 s~GE~lSa~l~~~~L~~~Gi~a~~ 137 (448)
T PRK09084 114 SHGELMSTLLFVELLRERGVQAEW 137 (448)
T ss_pred hHHHHHHHHHHHHHHHhCCCCcEE
Confidence 567899999999999999998543
No 181
>PLN02946 cysteine-tRNA ligase
Probab=20.93 E-value=2.9e+02 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHhcCCceee
Q 045912 40 EVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 40 ~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
++++.|+.|.+.|.+.|+.++-
T Consensus 514 Kdf~~AD~IR~~L~~~Gi~l~D 535 (557)
T PLN02946 514 KEYEKSDAIRKDLAAVGIALMD 535 (557)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE
Confidence 5689999999999999998864
No 182
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=20.92 E-value=1.9e+02 Score=19.81 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHhcCCceeec
Q 045912 40 EVHNTNALIRSELDKLGITYSCP 62 (218)
Q Consensus 40 ~E~~~a~~i~~~L~~~G~~~~~~ 62 (218)
+-.+.|..+.+||+..|++++..
T Consensus 8 ~n~r~AqaF~DYl~sqgI~~~i~ 30 (101)
T PF12122_consen 8 NNPRAAQAFIDYLASQGIELQIE 30 (101)
T ss_dssp SSHHHHHHHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHHHHHHCCCeEEEE
Confidence 34567888999999999997764
No 183
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=20.91 E-value=1.6e+02 Score=24.76 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=26.1
Q ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 045912 3 YSLDEAFADQILIETERDKNWLISIRRQIHENPEL 37 (218)
Q Consensus 3 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~L~~~pe~ 37 (218)
|.-.++|+.-+..++.+..+.+.+++.+|...|++
T Consensus 224 f~~ke~~m~pLn~fi~~~~~~~~~fl~~l~~v~~~ 258 (331)
T cd05132 224 FGDKEKWMVPLNPWIDENKEKVNNFLEELTEVGDP 258 (331)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 44456777778888888888888888888777764
No 184
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=20.90 E-value=2.5e+02 Score=20.20 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=33.6
Q ss_pred HHhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Q 045912 18 ERDKNWLISIRRQIHENPELRFEVHNTNALIRSELDKLG 56 (218)
Q Consensus 18 ~~~~~~~~~~~~~L~~~pe~~~~E~~~a~~i~~~L~~~G 56 (218)
+++..+|-+|-..|-+=|..||-=.++++.+++|=+++.
T Consensus 3 ee~l~RL~eLa~~LGRE~d~SGSaAeiaqRVAEwEEEl~ 41 (125)
T PF14000_consen 3 EENLARLRELAAQLGREPDMSGSAAEIAQRVAEWEEELD 41 (125)
T ss_pred HHHHHHHHHHHHHhCcCCCccccHHHHHHHHHHHHHHHh
Confidence 356677888888999999999999999999999988876
No 185
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=20.49 E-value=4.4e+02 Score=21.79 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHHhcCCceeecC
Q 045912 38 RFEVHNTNALIRSELDKLGITYSCPL 63 (218)
Q Consensus 38 ~~~E~~~a~~i~~~L~~~G~~~~~~~ 63 (218)
++.|.-.+..++.+|++.|+....-.
T Consensus 121 s~GE~lSa~lla~~L~~~Gi~a~~ld 146 (293)
T cd04243 121 SFGELLSSRLMSAYLQEQGLPAAWLD 146 (293)
T ss_pred eHHHHHHHHHHHHHHHhCCCCcEEEc
Confidence 56789999999999999999876543
No 186
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=20.45 E-value=69 Score=20.38 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCcee
Q 045912 46 ALIRSELDKLGITYS 60 (218)
Q Consensus 46 ~~i~~~L~~~G~~~~ 60 (218)
.+|.+.|++.||++.
T Consensus 2 ~~I~~~L~~~G~~v~ 16 (69)
T smart00596 2 SQIEEALKDIGFPVL 16 (69)
T ss_pred HHHHHHHHHcCCcee
Confidence 578999999999874
No 187
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=6.8e+02 Score=24.04 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCceeec--------CCCceEEEEecCC--CCcEEEEEeeCCCCC-ccccCCCCccccCCCcccccC-
Q 045912 44 TNALIRSELDKLGITYSCP--------LVKTGIVAKIGSG--SHPFIALRADMDALP-LQELVNWEHKSKIDGKMHACG- 111 (218)
Q Consensus 44 ~a~~i~~~L~~~G~~~~~~--------~~~~~via~~~~~--~~~~i~~~~h~D~vp-~~~~~~~pf~~~~~g~~~~~G- 111 (218)
+...|.....+-+|-.... ..++||+|+-||. +.-.|++.+|-|-|. +......-|-. ..|.++++.
T Consensus 472 ~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~gg~vv-h~g~l~~~l~ 550 (895)
T KOG0188|consen 472 CKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQVGGYVV-HIGVLEGDLS 550 (895)
T ss_pred chhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhcccCCEEE-EEeeeccccc
Confidence 3445555555555532221 2479999998763 345788999888764 22111011110 012233322
Q ss_pred --C---------------cHHHHH--HHHHHHHHHhhcccCCCCCccCCeEEEEEeEec-CChHHHHHHHHHHHHHHHH
Q 045912 112 --H---------------DAPTTM--LLGEAKLLHRRKDQLNAADVISPRAEFGGTLRS-LTTEGMYRLQKRLHNVVKQ 170 (218)
Q Consensus 112 --~---------------d~~~a~--ll~aa~~L~~~~~~~~~~NvIPd~a~~~~diR~-~~~e~~~~l~~~i~~~~~~ 170 (218)
+ .-|.|. +=.|.+.+- .+..-++.-|-||++.|.+.-+. .+.+.+..+++.+++.+..
T Consensus 551 vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ne~I~~ 628 (895)
T KOG0188|consen 551 VGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKINEFIQK 628 (895)
T ss_pred cchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHHHHHHHHHHHhc
Confidence 1 122222 112222221 11112378899999999999987 7888888888888888764
No 188
>TIGR00702 uncharacterized domain. This uncharacterized domain comprises the whole of a protein in Methanococcus jannaschii and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=20.38 E-value=5.6e+02 Score=22.02 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCCceee
Q 045912 43 NTNALIRSELDKLGITYSC 61 (218)
Q Consensus 43 ~~a~~i~~~L~~~G~~~~~ 61 (218)
....-+.+.|++.|+++..
T Consensus 202 ~~~~~l~~~~~~~G~~v~l 220 (377)
T TIGR00702 202 SIIAHLIEKLEAAGVPIDL 220 (377)
T ss_pred HHHHHHHHHHHhCCCeEEE
Confidence 4455566788999998764
No 189
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=20.31 E-value=2.4e+02 Score=24.61 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHHhcCCceee
Q 045912 39 FEVHNTNALIRSELDKLGITYSC 61 (218)
Q Consensus 39 ~~E~~~a~~i~~~L~~~G~~~~~ 61 (218)
.++..|+.||++..++.|+++..
T Consensus 187 ~ED~~T~~yL~~~a~~AG~~t~~ 209 (397)
T PHA02117 187 VEDFVTIAYLAETATEAGAVVKF 209 (397)
T ss_pred hhHHHHHHHHHHHHHHcCCceEE
Confidence 45678999999999999998653
Done!