BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045913
         (266 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 110/247 (44%), Gaps = 34/247 (13%)

Query: 37  SGAWQLAHATFYGDQ--SASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQ 94
           +G W  A AT+YG    + +   GGACG  N+ +  Y   TA  +  +F  G  CG+CY+
Sbjct: 16  NGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYE 75

Query: 95  IKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD--- 151
           ++C + P C        +T  N  P                  HFD+S  AF  +A    
Sbjct: 76  VRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPGL 121

Query: 152 ----WKAGIIPVIYRRVPCVKAGGLRFAFQ----GNGYWLLVYVLNVAGGGDIANMWVKG 203
                  GI+ V +RRV C    G +  F      N  +L V V  VA  GDI  M ++ 
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181

Query: 204 TRTG-WISMSHNWGASYQ---AFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTY 259
             +  W  M  +WGA ++   A A  G    S +LTS S K+ I A +V P NW     Y
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKG--PFSIRLTSESGKKVI-AKDVIPANWRPDAVY 238

Query: 260 SSDVNFH 266
           +S+V F+
Sbjct: 239 TSNVQFY 245


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 32/238 (13%)

Query: 40  WQLAHATFYGDQSAS--ETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKC 97
           W  A +T+YG  + +  +  GGACGY ++    +   T   ++ +F  G  CG+C++IKC
Sbjct: 19  WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC 78

Query: 98  HDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD------ 151
                C        +T  N  P              P   HFD+S  AF  +A       
Sbjct: 79  TKPEACSGEPVVVHITDDNEEP------------IAP--YHFDLSGHAFGAMAKKGDEQK 124

Query: 152 -WKAGIIPVIYRRVPCVKAGGLRFAFQ----GNGYWLLVYVLNVAGGGDIANMWVKGT-R 205
              AG + + +RRV C    G +  F      N  +L + V  V G GD+  + +K   +
Sbjct: 125 LRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGK 184

Query: 206 TGWISMSHNWGASYQAFA--TLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSS 261
             WI +  +WGA ++      L G   + + T+    +T  A +V P  W    +Y S
Sbjct: 185 DKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKT-EAEDVIPEGWKADTSYES 240


>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
           (Pepck) From Trypanosoma Cruzi
 pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
           (Pepck) From Trypanosoma Cruzi
          Length = 524

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)

Query: 32  RPIFRS---GAWQLAHATFYGDQSASE 55
           RPIF S   G + + HATFYG+Q A +
Sbjct: 375 RPIFSSCFGGPFLVRHATFYGEQLAEK 401


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,678,033
Number of Sequences: 62578
Number of extensions: 373882
Number of successful extensions: 548
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)