Query 045913
Match_columns 266
No_of_seqs 147 out of 1011
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:48:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 3.7E-73 8E-78 507.6 28.0 229 35-265 25-256 (256)
2 PLN00050 expansin A; Provision 100.0 7.7E-71 1.7E-75 490.8 26.2 224 38-265 23-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 5.3E-66 1.1E-70 459.4 26.1 210 38-266 23-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 7.7E-27 1.7E-31 195.6 20.9 194 40-266 30-231 (232)
5 PLN03024 Putative EG45-like do 100.0 6.6E-28 1.4E-32 195.2 13.2 99 41-163 22-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 2.2E-27 4.8E-32 181.1 8.1 86 75-161 1-87 (87)
7 PLN00115 pollen allergen group 99.9 4.1E-25 9E-30 176.8 10.8 92 165-265 21-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 9.5E-23 2.1E-27 154.1 10.2 78 172-250 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 3.3E-19 7.2E-24 133.1 6.1 74 75-161 1-78 (78)
10 PF00967 Barwin: Barwin family 98.9 9.6E-10 2.1E-14 86.8 4.4 60 85-166 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.1 1.9E-05 4.1E-10 63.6 8.6 66 74-165 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00018 4E-09 62.9 11.0 94 43-168 1-95 (208)
13 PRK10672 rare lipoprotein A; P 97.8 0.00069 1.5E-08 64.0 14.4 93 42-165 80-172 (361)
14 COG0797 RlpA Lipoproteins [Cel 97.7 0.00035 7.5E-09 62.2 10.3 60 89-167 119-178 (233)
15 PF02015 Glyco_hydro_45: Glyco 88.6 0.49 1.1E-05 41.4 3.5 54 75-145 70-124 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 71.2 7.5 0.00016 31.7 4.5 46 195-241 42-105 (131)
17 cd02854 Glycogen_branching_enz 64.2 18 0.00038 27.9 5.1 48 196-244 16-76 (99)
18 cd02110 SO_family_Moco_dimer S 63.3 16 0.00034 34.2 5.5 50 192-242 234-293 (317)
19 TIGR02588 conserved hypothetic 47.5 1.2E+02 0.0027 24.6 7.4 57 179-237 49-119 (122)
20 PF10417 1-cysPrx_C: C-termina 46.7 11 0.00024 24.4 1.1 11 247-257 10-20 (40)
21 PLN00177 sulfite oxidase; Prov 39.0 76 0.0016 30.7 6.0 22 191-212 293-315 (393)
22 cd02113 bact_SoxC_Moco bacteri 38.7 64 0.0014 30.4 5.3 50 191-241 235-293 (326)
23 cd02114 bact_SorA_Moco sulfite 38.7 72 0.0016 30.6 5.7 49 192-241 286-344 (367)
24 KOG0427 Ubiquitin conjugating 33.4 46 0.001 27.4 3.0 44 218-265 26-69 (161)
25 cd02111 eukary_SO_Moco molybdo 29.8 1.4E+02 0.003 28.6 6.1 23 191-213 273-296 (365)
26 cd02855 Glycogen_branching_enz 29.3 1.7E+02 0.0036 21.8 5.4 33 210-243 50-85 (106)
27 PRK10564 maltose regulon perip 27.3 2.1E+02 0.0045 26.9 6.6 75 158-261 47-124 (303)
28 PRK10301 hypothetical protein; 26.9 89 0.0019 25.1 3.6 27 151-177 95-124 (124)
29 COG2372 CopC Uncharacterized p 26.6 84 0.0018 25.7 3.4 27 151-177 96-125 (127)
30 cd02861 E_set_proteins_like E 23.2 2.2E+02 0.0047 20.6 4.9 45 197-243 14-60 (82)
31 KOG4192 Uncharacterized conser 22.7 3.2E+02 0.0069 22.3 6.0 78 132-213 37-124 (134)
32 PF04234 CopC: CopC domain; I 21.0 79 0.0017 23.9 2.2 26 152-177 69-97 (97)
33 cd02112 eukary_NR_Moco molybdo 20.9 2.7E+02 0.0057 26.9 6.2 20 194-213 300-320 (386)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=3.7e-73 Score=507.61 Aligned_cols=229 Identities=55% Similarity=1.064 Sum_probs=218.2
Q ss_pred cCCCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeC---CCCCccCCCceEE
Q 045913 35 FRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCH---DSPHCYTYVSFTT 111 (266)
Q Consensus 35 ~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~---~~~~C~~g~~~v~ 111 (266)
+..++|.+|+|||||++|++++++|||||+++...+++.++||+|+++|++|+.||+||||+|. ++++|.++ ++|+
T Consensus 25 ~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-~sV~ 103 (256)
T PLN00193 25 FTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-ASVT 103 (256)
T ss_pred cCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-CeEE
Confidence 3466799999999999999999999999999888889999999999999999999999999994 67789876 5899
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEEeecccCCceeEEEcccCcEEEEEEEeeC
Q 045913 112 VTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVA 191 (266)
Q Consensus 112 V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~V~C~~~g~I~~~v~ss~~w~av~v~n~~ 191 (266)
|+|||+||++|++|+++++||++++.|||||++||.+||....|+|+|+||||+|+++|+|+|+|++++||++|+|.|++
T Consensus 104 Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~ 183 (256)
T PLN00193 104 ITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVG 183 (256)
T ss_pred EEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeC
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEecCcceeEcccCCCceEEecccCCCcceEEEEEEccCCeEEEEccccCCCCCCCcEEecCccc
Q 045913 192 GGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNF 265 (266)
Q Consensus 192 g~~~I~sVeV~~~g~~W~~m~r~~g~~W~~~~~l~g~Pl~~RvT~~~~G~~v~~~~viP~~w~~G~ty~~~~qf 265 (266)
|+++|++||||+++++|++|+|+||++|+++.+|.++||+||||+.+ |+++++.||||++|++|+||++++||
T Consensus 184 G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~-G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 184 GAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTD-GQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred CCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcC-CeEEEECceeCCCCCCCCeEecCccC
Confidence 99999999999987799999999999999998888889999999998 99999999999999999999999998
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=7.7e-71 Score=490.84 Aligned_cols=224 Identities=54% Similarity=1.047 Sum_probs=212.9
Q ss_pred CCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeCC-CCCccCCCceEEEEEec
Q 045913 38 GAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHD-SPHCYTYVSFTTVTATN 116 (266)
Q Consensus 38 ~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~-~~~C~~g~~~v~V~VtD 116 (266)
.+|..++|||||+++++++++|||||+++..++++.++||+|+++|++|+.||+||||+|.+ +.+|.++ +|+|+|||
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g--sV~V~itd 100 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG--SIIITATN 100 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC--cEEEEEec
Confidence 46999999999999999999999999998888899999999999999999999999999964 4579765 89999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEEeecccCCceeEEEcccCcEEEEEEEeeCCCcce
Q 045913 117 LCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDI 196 (266)
Q Consensus 117 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~V~C~~~g~I~~~v~ss~~w~av~v~n~~g~~~I 196 (266)
+||++++.|+++++||++++.|||||++||.+||....|+|+|+||||||+++|+|+|+|++++||++|+|.|++|+++|
T Consensus 101 ~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gdi 180 (247)
T PLN00050 101 FCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDI 180 (247)
T ss_pred CCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred EEEEEEecCcceeEcccCCCceEEecccCCCcceEEEEEEccCCeEEEEccccCCCCCCCcEEecCccc
Q 045913 197 ANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNF 265 (266)
Q Consensus 197 ~sVeV~~~g~~W~~m~r~~g~~W~~~~~l~g~Pl~~RvT~~~~G~~v~~~~viP~~w~~G~ty~~~~qf 265 (266)
++|+||+++++|++|+|+||++|+++.++.++||+||||+.+ |+++++.||||++|++|+||++. ||
T Consensus 181 ~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~-G~~~~~~~V~Pa~W~~G~ty~~~-~f 247 (247)
T PLN00050 181 VAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSD-GRTVISNNAAPSNWAFGQTYTGM-QF 247 (247)
T ss_pred EEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecC-CcEEEECceeCCCCCCCCeEecC-cC
Confidence 999999987789999999999999998888889999999988 99999999999999999999994 87
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=5.3e-66 Score=459.41 Aligned_cols=210 Identities=28% Similarity=0.570 Sum_probs=191.1
Q ss_pred CCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeCCCCCccCCCceEEEEEecC
Q 045913 38 GAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNL 117 (266)
Q Consensus 38 ~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~~v~V~VtD~ 117 (266)
++|.+++|||||+++++|+++|||||+++..+.++.++||++ ++|++|++||+||||+|.++++|.++ +|+|+|||.
T Consensus 23 ~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~--~v~V~iTd~ 99 (247)
T PLN03023 23 QDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDD--GVNVVVTDY 99 (247)
T ss_pred CCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCC--CeEEEEEeC
Confidence 349999999999999999999999999988778889999999 99999999999999999999999776 799999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecCHHHHHhhcc-------ccCCeeeEEEEEeecccCC-ceeEEEc--cc-CcEEEEE
Q 045913 118 CPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD-------WKAGIIPVIYRRVPCVKAG-GLRFAFQ--GN-GYWLLVY 186 (266)
Q Consensus 118 Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~~~V~C~~~g-~I~~~v~--ss-~~w~av~ 186 (266)
||. ++.|||||.+||.+||. ...|+|+|+||||||.++| +|+|+|+ ++ ++|++|+
T Consensus 100 ~~~--------------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vl 165 (247)
T PLN03023 100 GEG--------------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV 165 (247)
T ss_pred CCC--------------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEE
Confidence 984 25899999999999998 4679999999999999999 9999997 43 7899999
Q ss_pred EEeeCCCcceEEEEEEecCc-ceeEcccCCCceEEecccCCCcceEEEE--EEccCCe-EEEEccccCCCCCCCcEEecC
Q 045913 187 VLNVAGGGDIANMWVKGTRT-GWISMSHNWGASYQAFATLGGQALSFKL--TSYSSKE-TIFAYNVAPPNWNVGLTYSSD 262 (266)
Q Consensus 187 v~n~~g~~~I~sVeV~~~g~-~W~~m~r~~g~~W~~~~~l~g~Pl~~Rv--T~~~~G~-~v~~~~viP~~w~~G~ty~~~ 262 (266)
|.|++|+++|++||||++++ +|++|+|+||++|+++.+|.| ||+||+ |..+ |+ +++++||||++|++|+||+++
T Consensus 166 v~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~-g~~~vva~nViPa~Wk~G~TY~s~ 243 (247)
T PLN03023 166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSA-GQTWVQAKNVIPSDWKAGVAYDSN 243 (247)
T ss_pred EEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCC-CcEEEEECceeCCCCCCCCEEecc
Confidence 99999999999999999765 899999999999999988998 666666 4446 54 589999999999999999999
Q ss_pred cccC
Q 045913 263 VNFH 266 (266)
Q Consensus 263 ~qf~ 266 (266)
+||.
T Consensus 244 vq~~ 247 (247)
T PLN03023 244 IQLD 247 (247)
T ss_pred cccC
Confidence 9995
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.95 E-value=7.7e-27 Score=195.56 Aligned_cols=194 Identities=22% Similarity=0.289 Sum_probs=160.5
Q ss_pred eeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCC----CCCCceEEEEeCCCCCccCCCceEEEEEe
Q 045913 40 WQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGG----YACGTCYQIKCHDSPHCYTYVSFTTVTAT 115 (266)
Q Consensus 40 ~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~~v~c~~~~~C~~g~~~v~V~Vt 115 (266)
-+.|.|||-|... .+||=-... -+.+..+.|+|+.+-|-| +.-|+.++|. +|+ | +.+|.||
T Consensus 30 ~f~G~ATyTgsGY----sGGAflLDP---I~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GPK----G--~TTVYVT 94 (232)
T COG4305 30 LFEGYATYTGSGY----SGGAFLLDP---IPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GPK----G--KTTVYVT 94 (232)
T ss_pred ccceeEEEecccc----cCceEEecC---cCCcceeeecCHHHcccCCchhhhccceEEEE--CCC----C--ceEEEEe
Confidence 5789999988754 467764433 334567999999888754 6799999999 884 4 6789999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEEeecccCCceeEEEc--ccCcEEEEEEEeeCCC
Q 045913 116 NLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQ--GNGYWLLVYVLNVAGG 193 (266)
Q Consensus 116 D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~V~C~~~g~I~~~v~--ss~~w~av~v~n~~g~ 193 (266)
|..|+ +.++.+|||+.||.+|++..+|+|+|+||.|+-+..||+.++++ |+.||.+|||+||.
T Consensus 95 DlYPe-------------gasGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~-- 159 (232)
T COG4305 95 DLYPE-------------GASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK-- 159 (232)
T ss_pred ccccc-------------ccccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc--
Confidence 99998 23589999999999999999999999999999999999999998 78999999999998
Q ss_pred cceEEEEEEecCcceeEcccCCCceEEecccCCCcceEEEEEEccCCeEEEEc-cccCCCCCCCcEE-ecCcccC
Q 045913 194 GDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAY-NVAPPNWNVGLTY-SSDVNFH 266 (266)
Q Consensus 194 ~~I~sVeV~~~g~~W~~m~r~~g~~W~~~~~l~g~Pl~~RvT~~~~G~~v~~~-~viP~~w~~G~ty-~~~~qf~ 266 (266)
.||.++|+.+.+ .|..|...++|.|.-.. |...||.+|+|++. |+.++.. -.+|..-...+.+ .++|||+
T Consensus 160 yPV~KlE~~qdg-~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIR-G~~l~DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 160 YPVMKLEYEQDG-KWINLPKMDYNHFVGTN-LGTGPLKVRMTDIR-GKVLKDTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred CceEEEEEecCC-eEeeccccccceeeccc-cCCCceEEEEeecc-cceeecccccccccccCCceeecceeecC
Confidence 899999998754 79999999999887665 44459999999999 9999875 4667655544422 3888885
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=6.6e-28 Score=195.23 Aligned_cols=99 Identities=35% Similarity=0.652 Sum_probs=85.3
Q ss_pred eEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeCCC-----CCccCCCceEEEEEe
Q 045913 41 QLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDS-----PHCYTYVSFTTVTAT 115 (266)
Q Consensus 41 ~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~-----~~C~~g~~~v~V~Vt 115 (266)
..|+||||++.+ .||| |++ .+++.++||+++.+|++|+.||+||||+|.++ ..|.. ++|+|+|+
T Consensus 22 ~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~g--ksV~V~Vt 90 (125)
T PLN03024 22 TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTG--KSVTVKIV 90 (125)
T ss_pred cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccC--CeEEEEEE
Confidence 579999999765 5799 554 23678999999999999999999999999865 36743 59999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEE
Q 045913 116 NLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRR 163 (266)
Q Consensus 116 D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~ 163 (266)
|+||++ |. .|||||++||.+||+++.|+|+|+|.+
T Consensus 91 D~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 91 DHCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cCCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 999951 65 599999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.94 E-value=2.2e-27 Score=181.12 Aligned_cols=86 Identities=60% Similarity=1.167 Sum_probs=80.6
Q ss_pred EEEecccccCCCCCCCceEEEEeC-CCCCccCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhcccc
Q 045913 75 TAALSSMLFNGGYACGTCYQIKCH-DSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWK 153 (266)
Q Consensus 75 ~aA~s~~~~~~g~~CG~C~~v~c~-~~~~C~~g~~~v~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~ 153 (266)
+||+|+++|++|++||+||||+|. +++.|.++ ++|+|+|||+||+++..|+++++||.+++.|||||++||.+||+..
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~-~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~ 79 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPG-GSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYK 79 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCC-CeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhc
Confidence 489999999999999999999996 67789876 5999999999999999999999999988999999999999999999
Q ss_pred CCeeeEEE
Q 045913 154 AGIIPVIY 161 (266)
Q Consensus 154 ~G~v~i~~ 161 (266)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.92 E-value=4.1e-25 Score=176.85 Aligned_cols=92 Identities=15% Similarity=0.315 Sum_probs=82.3
Q ss_pred ecccCCceeEEEc--ccCcEEEEEEEeeCCCcceEEEEEEecCc-cee-EcccCCCceEEecc--cCCCcceEEEEEEcc
Q 045913 165 PCVKAGGLRFAFQ--GNGYWLLVYVLNVAGGGDIANMWVKGTRT-GWI-SMSHNWGASYQAFA--TLGGQALSFKLTSYS 238 (266)
Q Consensus 165 ~C~~~g~I~~~v~--ss~~w~av~v~n~~g~~~I~sVeV~~~g~-~W~-~m~r~~g~~W~~~~--~l~g~Pl~~RvT~~~ 238 (266)
.|.. +|+|+|+ +|++||++++ | ++|.+||||++++ +|+ +|+|+||++|+++. +|+| ||+||+|+.+
T Consensus 21 ~~g~--~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~ 92 (118)
T PLN00115 21 SCAT--EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKG 92 (118)
T ss_pred hcCC--ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeC
Confidence 4643 8999998 6799998776 3 4699999999976 899 99999999999864 7888 9999999998
Q ss_pred CCeEEEEccccCCCCCCCcEEecCccc
Q 045913 239 SKETIFAYNVAPPNWNVGLTYSSDVNF 265 (266)
Q Consensus 239 ~G~~v~~~~viP~~w~~G~ty~~~~qf 265 (266)
|++++++||||++|++|+||++++||
T Consensus 93 -G~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 93 -GGYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred -CCEEEECceECCCCCCCCEEeccccC
Confidence 99999999999999999999999997
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.89 E-value=9.5e-23 Score=154.07 Aligned_cols=78 Identities=45% Similarity=0.736 Sum_probs=65.2
Q ss_pred eeEEEc--ccCcEEEEEEEeeCCCcceEEEEEEecCc-ceeEcccCCCceEEec-ccCCCcceEEEEEEccCCeEEEEcc
Q 045913 172 LRFAFQ--GNGYWLLVYVLNVAGGGDIANMWVKGTRT-GWISMSHNWGASYQAF-ATLGGQALSFKLTSYSSKETIFAYN 247 (266)
Q Consensus 172 I~~~v~--ss~~w~av~v~n~~g~~~I~sVeV~~~g~-~W~~m~r~~g~~W~~~-~~l~g~Pl~~RvT~~~~G~~v~~~~ 247 (266)
|+|+|+ |++||++|+|.|++|.++|++|||+++++ +|++|+|+||++|+++ .++.+ ||+||||+.++|++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689997 67999999999999999999999999887 7999999999999998 66665 9999999966599999999
Q ss_pred ccC
Q 045913 248 VAP 250 (266)
Q Consensus 248 viP 250 (266)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=3.3e-19 Score=133.09 Aligned_cols=74 Identities=43% Similarity=0.762 Sum_probs=61.9
Q ss_pred EEEecccccCCCCCCCceEEEEeC--CCCC--ccCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhc
Q 045913 75 TAALSSMLFNGGYACGTCYQIKCH--DSPH--CYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIA 150 (266)
Q Consensus 75 ~aA~s~~~~~~g~~CG~C~~v~c~--~~~~--C~~g~~~v~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 150 (266)
+||++..+|++|.+||+||+++|. .+.. |..+.++|+|+|+|+||+ |. ..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 589999999999999999999994 3333 765226999999999998 76 499999999999999
Q ss_pred cccCCeeeEEE
Q 045913 151 DWKAGIIPVIY 161 (266)
Q Consensus 151 ~~~~G~v~i~~ 161 (266)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.93 E-value=9.6e-10 Score=86.84 Aligned_cols=60 Identities=25% Similarity=0.521 Sum_probs=43.6
Q ss_pred CCCCCCceEEEEeCCCCCccCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhcc----ccCCeeeEE
Q 045913 85 GGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD----WKAGIIPVI 160 (266)
Q Consensus 85 ~g~~CG~C~~v~c~~~~~C~~g~~~v~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~----~~~G~v~i~ 160 (266)
....||+|++|+. .. .+.+++|+|+|+|+. ++|||++.+|.+|-. ...|.+.|.
T Consensus 56 gq~~CGkClrVTN--t~----tga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~ 113 (119)
T PF00967_consen 56 GQDSCGKCLRVTN--TA----TGAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVD 113 (119)
T ss_dssp SGGGTT-EEEEE---TT----T--EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEE
T ss_pred CcccccceEEEEe--cC----CCcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEE
Confidence 4468999999994 32 457999999999985 589999999999953 356899999
Q ss_pred EEEeec
Q 045913 161 YRRVPC 166 (266)
Q Consensus 161 ~~~V~C 166 (266)
|++|+|
T Consensus 114 y~fV~C 119 (119)
T PF00967_consen 114 YEFVDC 119 (119)
T ss_dssp EEEE--
T ss_pred EEEEcC
Confidence 999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.10 E-value=1.9e-05 Score=63.63 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=47.0
Q ss_pred eEEEecc-cccCCCCCCCceEEEEeCCCCCccCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhcc-
Q 045913 74 DTAALSS-MLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD- 151 (266)
Q Consensus 74 ~~aA~s~-~~~~~g~~CG~C~~v~c~~~~~C~~g~~~v~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~- 151 (266)
.+.+... .-|+ +..||.|++++- ++++|.|..+|.=+ ..|+|+.+||++|.+
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty--------~g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g 97 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTY--------NGRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNG 97 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEE--------TTEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS
T ss_pred eeccccccccCC-CCCCCCeEEEEE--------CCeEEEEEEEecCC-----------------CcccchHHHHHHhcCC
Confidence 4666665 4565 478999999993 44799999999833 469999999999976
Q ss_pred --ccCCeeeEEEEEee
Q 045913 152 --WKAGIIPVIYRRVP 165 (266)
Q Consensus 152 --~~~G~v~i~~~~V~ 165 (266)
...|+|+++|++|+
T Consensus 98 ~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 98 QAVELGRVDATYTQVD 113 (119)
T ss_dssp -CCCC-EEE-EEEEE-
T ss_pred cccceeEEEEEEEEcC
Confidence 35699999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.86 E-value=0.00018 Score=62.93 Aligned_cols=94 Identities=19% Similarity=0.116 Sum_probs=67.1
Q ss_pred EEEEEeCCC-CCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeCCCCCccCCCceEEEEEecCCCCC
Q 045913 43 AHATFYGDQ-SASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPN 121 (266)
Q Consensus 43 g~aT~Yg~~-~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~~v~V~VtD~Cp~~ 121 (266)
|.|+|||.. .+. ..|.|-.-. ...|+||=.+ .-.|...+|+... ++++|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~G~---~TAnGe~y~----~~~~tAAHkt------LPlgT~V~VtNl~------ngrsviVrVnDRGPf~ 61 (208)
T TIGR00413 1 GLASWYGPKFHGR---KTANGEVYN----MKALTAAHKT------LPFNTYVKVTNLH------NNRSVIVRINDRGPFS 61 (208)
T ss_pred CEEeEeCCCCCCC---cCCCCeecC----CCcccccccc------CCCCCEEEEEECC------CCCEEEEEEeCCCCCC
Confidence 689999864 221 223322111 1234544332 2478899999542 5589999999999961
Q ss_pred CCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEEeeccc
Q 045913 122 WSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVK 168 (266)
Q Consensus 122 ~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~V~C~~ 168 (266)
+..-+|||+.|+.+|+-...|+.+|+.+.+....
T Consensus 62 -------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~ 95 (208)
T TIGR00413 62 -------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAK 95 (208)
T ss_pred -------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCC
Confidence 2468999999999999999999999999998765
No 13
>PRK10672 rare lipoprotein A; Provisional
Probab=97.79 E-value=0.00069 Score=63.99 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeCCCCCccCCCceEEEEEecCCCCC
Q 045913 42 LAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPN 121 (266)
Q Consensus 42 ~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~~v~V~VtD~Cp~~ 121 (266)
.|.|+|||..-.. ...|.| +..+ ...|+||-.+- --|...+|+..+ ++++|+|+|.|++|-.
T Consensus 80 ~G~ASwYg~~f~G--~~TA~G--e~~~--~~~~tAAH~tL------Plps~vrVtNl~------ngrsvvVrVnDRGP~~ 141 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASG--ERFD--PNALTAAHPTL------PIPSYVRVTNLA------NGRMIVVRINDRGPYG 141 (361)
T ss_pred EEEEEEeCCccCC--CcCcCc--eeec--CCcCeeeccCC------CCCCEEEEEECC------CCcEEEEEEeCCCCCC
Confidence 6888999865310 011111 1110 12355554332 367789999543 5589999999999961
Q ss_pred CCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEEee
Q 045913 122 WSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVP 165 (266)
Q Consensus 122 ~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~V~ 165 (266)
+..-+|||..|+.+|+-...+.|.|+.-.|.
T Consensus 142 -------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 142 -------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred -------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 2468999999999998877777777777663
No 14
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=0.00035 Score=62.21 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=50.8
Q ss_pred CCceEEEEeCCCCCccCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEEeecc
Q 045913 89 CGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCV 167 (266)
Q Consensus 89 CG~C~~v~c~~~~~C~~g~~~v~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~V~C~ 167 (266)
=|.-.+|+..+ ++++|+|+|.|++|- .. ...||||..|+++|+-...|+.+|+.+.+.+.
T Consensus 119 ~~t~v~VtNl~------NgrsvvVRINDRGPf------------~~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLD------NGRSVVVRINDRGPF------------VS-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEcc------CCcEEEEEEeCCCCC------------CC-CcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 35678898553 458999999999995 32 46899999999999999999999999999876
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=88.64 E-value=0.49 Score=41.45 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=30.6
Q ss_pred EEEecccccCCCCCCCceEEEEeCC-CCCccCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCceecCHHH
Q 045913 75 TAALSSMLFNGGYACGTCYQIKCHD-SPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPA 145 (266)
Q Consensus 75 ~aA~s~~~~~~g~~CG~C~~v~c~~-~~~C~~g~~~v~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~A 145 (266)
+||++-.--.+...|++|||++=++ +- .+|+.+|++|+.=-. -..+||||-.+.
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l----~GKkmiVQ~tNtG~d-------------lg~n~FDl~iPG 124 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL----KGKKMIVQVTNTGGD-------------LGSNQFDLAIPG 124 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT----TT-EEEEEEEEE-TT-------------TTTTEEEEE-TT
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc----CCCEeEEEecccCCC-------------CCCCeEEEEeCC
Confidence 5666522222336799999999764 32 357999999986322 125788886443
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=71.19 E-value=7.5 Score=31.68 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=27.5
Q ss_pred ceEEEEEEecCc-ceeEcccC--CC-----------ceEEecc---cCCCc-ceEEEEEEccCCe
Q 045913 195 DIANMWVKGTRT-GWISMSHN--WG-----------ASYQAFA---TLGGQ-ALSFKLTSYSSKE 241 (266)
Q Consensus 195 ~I~sVeV~~~g~-~W~~m~r~--~g-----------~~W~~~~---~l~g~-Pl~~RvT~~~~G~ 241 (266)
+|.+|||..+++ +|++.... .. -.|+++- .+.|. -+.+|-|+.+ |.
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~-G~ 105 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDES-GN 105 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETT-S-
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeecc-cc
Confidence 899999999887 79975432 22 1466652 11342 4666668877 54
No 17
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=64.23 E-value=18 Score=27.93 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=33.7
Q ss_pred eEEEEEEecCccee----EcccCCCceEEeccc---------CCCcceEEEEEEccCCeEEE
Q 045913 196 IANMWVKGTRTGWI----SMSHNWGASYQAFAT---------LGGQALSFKLTSYSSKETIF 244 (266)
Q Consensus 196 I~sVeV~~~g~~W~----~m~r~~g~~W~~~~~---------l~g~Pl~~RvT~~~~G~~v~ 244 (266)
-++|+|.++-.+|. +|.|....+|++.-+ ..+..+.+||+..+ |+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~-G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPS-GEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCC-CCEEE
Confidence 45677776544675 488877789987522 25678999999877 77653
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=63.27 E-value=16 Score=34.21 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=31.7
Q ss_pred CCcceEEEEEEecCc-ceeEcccCCC-------ceEEecc-cCCC-cceEEEEEEccCCeE
Q 045913 192 GGGDIANMWVKGTRT-GWISMSHNWG-------ASYQAFA-TLGG-QALSFKLTSYSSKET 242 (266)
Q Consensus 192 g~~~I~sVeV~~~g~-~W~~m~r~~g-------~~W~~~~-~l~g-~Pl~~RvT~~~~G~~ 242 (266)
|...|++|||..+++ +|++..-... -.|+++- +..| --+.+|.++.. |.+
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~-g~~ 293 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDST-GNV 293 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCC-CCc
Confidence 335799999999988 8998654321 1566552 2233 25666777777 543
No 19
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=47.49 E-value=1.2e+02 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=36.2
Q ss_pred cCcEEEEEEEeeCCCcceEEEEEEec----C-----c--ceeEcccCCC--ceEEe-cccCCCcceEEEEEEc
Q 045913 179 NGYWLLVYVLNVAGGGDIANMWVKGT----R-----T--GWISMSHNWG--ASYQA-FATLGGQALSFKLTSY 237 (266)
Q Consensus 179 s~~w~av~v~n~~g~~~I~sVeV~~~----g-----~--~W~~m~r~~g--~~W~~-~~~l~g~Pl~~RvT~~ 237 (266)
.+||.-+.|.|.+| ...++|+|.+. + + +.-.+.+..- ..+-+ .+|-.+ -|.||+.+-
T Consensus 49 gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g-~L~irv~gY 119 (122)
T TIGR02588 49 GQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNG-QLRLRVAGY 119 (122)
T ss_pred CEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccC-eEEEEEEec
Confidence 56999999999987 57999999863 1 1 2333444321 23333 344444 688888764
No 20
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=46.70 E-value=11 Score=24.36 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=9.6
Q ss_pred cccCCCCCCCc
Q 045913 247 NVAPPNWNVGL 257 (266)
Q Consensus 247 ~viP~~w~~G~ 257 (266)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999986
No 21
>PLN00177 sulfite oxidase; Provisional
Probab=39.04 E-value=76 Score=30.74 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=17.3
Q ss_pred CCCcceEEEEEEecCc-ceeEcc
Q 045913 191 AGGGDIANMWVKGTRT-GWISMS 212 (266)
Q Consensus 191 ~g~~~I~sVeV~~~g~-~W~~m~ 212 (266)
+|...|++|||..+++ +|+...
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~ 315 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEAS 315 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeee
Confidence 3334799999999988 899764
No 22
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=38.71 E-value=64 Score=30.43 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=29.7
Q ss_pred CCCcceEEEEEEecCc-ceeEcccC--CC-c---eEEec-ccCCC-cceEEEEEEccCCe
Q 045913 191 AGGGDIANMWVKGTRT-GWISMSHN--WG-A---SYQAF-ATLGG-QALSFKLTSYSSKE 241 (266)
Q Consensus 191 ~g~~~I~sVeV~~~g~-~W~~m~r~--~g-~---~W~~~-~~l~g-~Pl~~RvT~~~~G~ 241 (266)
.|.+.|.+|||..+++ +|+...-. .+ . .|.+. .+..+ .-+-.|-|+.. |+
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~-G~ 293 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDET-GY 293 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCC-CC
Confidence 3446799999999988 89975442 11 1 33333 22223 24566667777 54
No 23
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=38.70 E-value=72 Score=30.55 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=29.9
Q ss_pred CCcceEEEEEEecCc-ceeEcc--cCCCc----eEEec-ccC-CC-cceEEEEEEccCCe
Q 045913 192 GGGDIANMWVKGTRT-GWISMS--HNWGA----SYQAF-ATL-GG-QALSFKLTSYSSKE 241 (266)
Q Consensus 192 g~~~I~sVeV~~~g~-~W~~m~--r~~g~----~W~~~-~~l-~g-~Pl~~RvT~~~~G~ 241 (266)
|...|++|||..+++ +|+... ...+. .|++. .+. .| .-+..|-|+.. |+
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~-G~ 344 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNND-GQ 344 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCC-CC
Confidence 346799999999988 899754 22222 46664 222 33 24555557776 53
No 24
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=33.44 E-value=46 Score=27.42 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=35.3
Q ss_pred eEEecccCCCcceEEEEEEccCCeEEEEccccCCCCCCCcEEecCccc
Q 045913 218 SYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNF 265 (266)
Q Consensus 218 ~W~~~~~l~g~Pl~~RvT~~~~G~~v~~~~viP~~w~~G~ty~~~~qf 265 (266)
.|+.+. +.| |..|+++.- .+|++-..-+|.-.-+|++|+-.+-|
T Consensus 26 e~q~~p-P~G--~~~~v~dnl-qqWii~v~Ga~GTLYa~e~~qLq~~F 69 (161)
T KOG0427|consen 26 EWQNNP-PTG--FKHRVTDNL-QQWIIEVTGAPGTLYANETYQLQVEF 69 (161)
T ss_pred HHhcCC-CCc--ceeecccch-heeEEEEecCCceeecCcEEEEEEec
Confidence 455543 444 889999988 89999888889888889999988777
No 25
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.76 E-value=1.4e+02 Score=28.55 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=17.9
Q ss_pred CCCcceEEEEEEecCc-ceeEccc
Q 045913 191 AGGGDIANMWVKGTRT-GWISMSH 213 (266)
Q Consensus 191 ~g~~~I~sVeV~~~g~-~W~~m~r 213 (266)
+|...|++|||..+++ +|+...-
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCc
Confidence 3445799999999988 8997543
No 26
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=29.31 E-value=1.7e+02 Score=21.77 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=20.0
Q ss_pred EcccCC-CceEEec--ccCCCcceEEEEEEccCCeEE
Q 045913 210 SMSHNW-GASYQAF--ATLGGQALSFKLTSYSSKETI 243 (266)
Q Consensus 210 ~m~r~~-g~~W~~~--~~l~g~Pl~~RvT~~~~G~~v 243 (266)
+|.|.. ...|... ....+....+|++..+ |++.
T Consensus 50 ~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~-g~~~ 85 (106)
T cd02855 50 PMRRRGDSGVWELFIPGLGEGELYKYEILGAD-GHLP 85 (106)
T ss_pred ecEECCCCCEEEEEECCCCCCCEEEEEEECCC-CCEE
Confidence 677755 5678753 2223346899988754 5443
No 27
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.34 E-value=2.1e+02 Score=26.86 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=40.9
Q ss_pred eEEEEEeecccCCceeEEEc-ccCcEEEEEEEeeCCCcceEEEEEEecCcceeEcccCCCceEEecccCCCcceEEEEEE
Q 045913 158 PVIYRRVPCVKAGGLRFAFQ-GNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTS 236 (266)
Q Consensus 158 ~i~~~~V~C~~~g~I~~~v~-ss~~w~av~v~n~~g~~~I~sVeV~~~g~~W~~m~r~~g~~W~~~~~l~g~Pl~~RvT~ 236 (266)
.+.|+.|. .++.+.|.+. +++.+ . ..++.++|.+.+|-.. .| +++|+|+|
T Consensus 47 ~l~wq~l~--~~~~~~~~L~~~sq~~---~--f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS 97 (303)
T PRK10564 47 QLTWQPVD--QSKTQTTQLATGGQQL---N--VAGISGPVAAYSLPAN---------------------IG-ELTLTLSS 97 (303)
T ss_pred cCCceEcc--CCCceEEEeCCCCcce---e--cCCCcccEEEEEcccc---------------------cc-cEEEEEEE
Confidence 46788775 4467888887 56655 1 2233345555555321 13 57777777
Q ss_pred ccCCeEEEEcc--ccCCCCCCCcEEec
Q 045913 237 YSSKETIFAYN--VAPPNWNVGLTYSS 261 (266)
Q Consensus 237 ~~~G~~v~~~~--viP~~w~~G~ty~~ 261 (266)
.-..+++.+.+ |+=++|++=++|.+
T Consensus 98 ~v~~~~VfaPnVlvLD~~~~~~~~y~s 124 (303)
T PRK10564 98 LVNDKSVFAPNVLVLDQNMRPAAFYPS 124 (303)
T ss_pred EecCCcEEeceEEEEcCCCCEEEEecc
Confidence 22123555554 34455555555553
No 28
>PRK10301 hypothetical protein; Provisional
Probab=26.90 E-value=89 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.1
Q ss_pred cccCCeeeEEEEEeeccc---CCceeEEEc
Q 045913 151 DWKAGIIPVIYRRVPCVK---AGGLRFAFQ 177 (266)
Q Consensus 151 ~~~~G~v~i~~~~V~C~~---~g~I~~~v~ 177 (266)
....|.+.|+||-|+=+- .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999873 678888875
No 29
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=26.56 E-value=84 Score=25.69 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.3
Q ss_pred cccCCeeeEEEEEeeccc---CCceeEEEc
Q 045913 151 DWKAGIIPVIYRRVPCVK---AGGLRFAFQ 177 (266)
Q Consensus 151 ~~~~G~v~i~~~~V~C~~---~g~I~~~v~ 177 (266)
++..|.+-++||.|+-+- +|.|.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 467899999999999983 689999886
No 30
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.21 E-value=2.2e+02 Score=20.56 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=27.2
Q ss_pred EEEEEEecCcce--eEcccCCCceEEecccCCCcceEEEEEEccCCeEE
Q 045913 197 ANMWVKGTRTGW--ISMSHNWGASYQAFATLGGQALSFKLTSYSSKETI 243 (266)
Q Consensus 197 ~sVeV~~~g~~W--~~m~r~~g~~W~~~~~l~g~Pl~~RvT~~~~G~~v 243 (266)
++|+|.++=.+| .+|+|.....|++.-++......+|+.- + |++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~v-d-g~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFVV-D-GEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEEE-C-CEEe
Confidence 678888753467 4588876568887643322235555543 4 5665
No 31
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.74 E-value=3.2e+02 Score=22.30 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=52.2
Q ss_pred CCC-CCCceecCHHHHHhhccccCCeeeEEEE-------EeecccCCceeEEEc-ccCcEEEEEEEeeCCCcceEEEEEE
Q 045913 132 CNP-PRAHFDMSKPAFMKIADWKAGIIPVIYR-------RVPCVKAGGLRFAFQ-GNGYWLLVYVLNVAGGGDIANMWVK 202 (266)
Q Consensus 132 C~~-~~~~~DLs~~AF~~ia~~~~G~v~i~~~-------~V~C~~~g~I~~~v~-ss~~w~av~v~n~~g~~~I~sVeV~ 202 (266)
|.. ..-||.+...-|..|-. . ....+|+ -+-|..-|--.|..- |++|=.+|.+.=..+ +.+++|+++
T Consensus 37 cs~k~~~hfivpas~f~ll~g-~--efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~~~ 112 (134)
T KOG4192|consen 37 CSKKQNRHFIVPASRFVLLVG-A--EFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVVWE 112 (134)
T ss_pred hhhccceEEEEeccceEEEeC-c--ceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEEEE
Confidence 652 35688888777777743 1 2333333 356665554456665 899999999976664 689999998
Q ss_pred ecCc-ceeEccc
Q 045913 203 GTRT-GWISMSH 213 (266)
Q Consensus 203 ~~g~-~W~~m~r 213 (266)
.-++ +|..+..
T Consensus 113 ~fnGqdwe~~~e 124 (134)
T KOG4192|consen 113 EFNGQDWEATME 124 (134)
T ss_pred EecCcchhHhhh
Confidence 8665 7776543
No 32
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=20.98 E-value=79 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=18.8
Q ss_pred ccCCeeeEEEEEeeccc---CCceeEEEc
Q 045913 152 WKAGIIPVIYRRVPCVK---AGGLRFAFQ 177 (266)
Q Consensus 152 ~~~G~v~i~~~~V~C~~---~g~I~~~v~ 177 (266)
+..|.+.|+||-|+=+- .|.+.|.|+
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 57899999999999652 467778774
No 33
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=20.89 E-value=2.7e+02 Score=26.93 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=16.5
Q ss_pred cceEEEEEEecCc-ceeEccc
Q 045913 194 GDIANMWVKGTRT-GWISMSH 213 (266)
Q Consensus 194 ~~I~sVeV~~~g~-~W~~m~r 213 (266)
..|++|||..+++ +|+....
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCC
Confidence 3799999999988 8997543
Done!