BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045917
(162 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 116/161 (72%), Gaps = 2/161 (1%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNN-- 59
+SRQI+ L+Q SKT H QL +L LKT+ DHN +IS+FI + +S+ F R +F+
Sbjct: 1 MSRQIQILLQRSKTTTHLLQLHSLILKTAKDHNPDLISQFIFSISSVSIEFARLVFDRLP 60
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
+ P+FA+N++IRAY K+S IE++KLF +M + GL+PDN TYPFVVKA + L++G GG
Sbjct: 61 IRAPIFAWNSIIRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGG 120
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++HS+I K G SD+Y+GNTLLRMYA + A+ +F+EM
Sbjct: 121 AMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEM 161
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSI 81
++ +K D + Y+ + + + ++ R +FN + + + +++++I Y +C
Sbjct: 124 SIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQA 183
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
+++ +F M+ +P+++T ++ A + L IGVG S+HS I + D +G +L
Sbjct: 184 DALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAIL 243
Query: 142 RMYAACKEIDFAKALFDEMPE 162
MY+ C I+ A +F+ + E
Sbjct: 244 EMYSKCGHIEKALKVFNSLTE 264
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 51 HFTRSL--FNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
H ++L FN++ L ++ +I A S ++I LF +M +TGL+PD++++ ++
Sbjct: 251 HIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILS 310
Query: 108 ASDQCLLIGVGGSVHSLIFKV-GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A L+ G + S + K+ + ++ M+A I+ A + MP
Sbjct: 311 ACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMP 365
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 104/160 (65%), Gaps = 2/160 (1%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV--MP 62
I TLI SKT QL ALFLKTSLDH+ + IS+F+L S ISL F S F+++ +P
Sbjct: 2 SICTLIHRSKTLTQLLQLHALFLKTSLDHHPFFISQFLLQSSTISLPFAASFFHSLPTLP 61
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
PLFA+NTLIRA+A T S+ LF + + L PDN TYPFV+KA + + +GG++H
Sbjct: 62 PLFAWNTLIRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTLH 121
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
SL K G S +++GN LL MYA C + A+ +FDEM +
Sbjct: 122 SLTLKTGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTD 161
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++++LI AY ++ +++ +F EM +P+++T ++ A + L + VG S+HS +
Sbjct: 166 SWSSLIAAYVASNSPLDAFYVFREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYV 225
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G+ D +G L MYA C EID A +F+ M +
Sbjct: 226 TSNGIEMDVALGTALFEMYAKCGEIDKALLVFNSMGD 262
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLH--FTRSLFNNVMPPLFAYNTLIRAY 74
H Q+ A L + L +T +++ I SL S H + SL N + L +N LIR Y
Sbjct: 35 HVSQIHAQILVSGLQQDTNLLTELIRFCSLSPSKHLSYAHSLLYNSLDSLPPWNFLIRGY 94
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
A +I++F M K G+ P+N T+PFV+KA CL + G VH+ IFK GL D
Sbjct: 95 ASGDAPKNAIRVFHRMRKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFKFGLDCDV 154
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161
Y+ N L+ +Y +CK I A +FDEMP
Sbjct: 155 YVNNNLVHLYGSCKRIWDACKVFDEMP 181
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTS 78
Q+ A K LD + Y+ + + + + MP + ++N++I A +
Sbjct: 140 QVHADIFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSIVSWNSVITACVQNL 199
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++I F +M G P+ T ++ Q + +G +HS + + G+ + +G
Sbjct: 200 WLGDAIWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTLNCQLGT 259
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA ++ +AK +FD M +
Sbjct: 260 ALVDMYAKSGDLGYAKLVFDRMEK 283
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 4/165 (2%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFN 58
IS + +L+ K+ QL A+ + L + IS+ F S ++++ +F+
Sbjct: 13 ISHNLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFS 72
Query: 59 NVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ P +F++NT+IR Y+ + I+S+ +F +ML+ G+ PD LTYPF+VKAS + L
Sbjct: 73 QLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQET 132
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G SVH+ I K G SD++I N+L+ MYAAC +A+ +FD + +
Sbjct: 133 GVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQ 177
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 7/147 (4%)
Query: 20 HQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSL---FNNVMPPLFAYNTLIRA 73
HQL A SL ++T+I+S+ F S +L R L F+N P+ ++N LIR
Sbjct: 27 HQLQAQIHLNSLHNDTHILSQLVYFFSLSPFKNLSHARKLVFHFSNNPSPI-SWNILIRG 85
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
YA + IESI +F +M + G++P+ LTYPF+ K+ L++ G VH+ + K GL SD
Sbjct: 86 YASSDSPIESIWVFKKMRENGVKPNKLTYPFIFKSCAMALVLCEGKQVHADLVKFGLDSD 145
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEM 160
Y+ N ++ Y CK+I +A+ +FDEM
Sbjct: 146 VYVCNNMINFYGCCKKIVYARKVFDEM 172
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 64/142 (45%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ A +K LD + Y+ + I + + R +F+ + + + ++N+++ A +
Sbjct: 132 QVHADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVMTACVENV 191
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+ I F +M PD + ++ + + +G VHS + G+ ++G
Sbjct: 192 WLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGMVLSVHLGT 251
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY + +A+ +F+ M
Sbjct: 252 ALVDMYGKSGALGYARVVFERM 273
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 7/163 (4%)
Query: 7 ETLIQL---SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNV 60
+TLI L K+ ++ AL + + I S+ +L S L ++ L NV
Sbjct: 14 QTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNV 73
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P F +NTLIRA++ T SI +F +ML+ G+ PD LTYPF+VKA+ + L +G
Sbjct: 74 PNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGM 133
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+VH I K G DK+I N+L+ MYA+C++I A+ +FDEMP
Sbjct: 134 AVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPR 176
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 7/163 (4%)
Query: 7 ETLIQL---SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNV 60
+TLI L K+ ++ AL + + I S+ +L S L ++ L NV
Sbjct: 14 QTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNV 73
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P F +NTLIRA++ T SI +F +ML+ G+ PD LTYPF+VKA+ + L +G
Sbjct: 74 PNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGM 133
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+VH I K G DK+I N+L+ MYA+C++I A+ +FDEMP
Sbjct: 134 AVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPR 176
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 8/150 (5%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNV-MPPLFAYNTLIR 72
+H ++L A LKT ++ + R +L+ S P SL + RS+F+ + P FA+NT+IR
Sbjct: 2 NHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIR 61
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
A+A +S S+ LF +M G+ PD+ T+PFV+KA C + G +HSL+FK+G S
Sbjct: 62 AHADSS-PSFSLSLFSKMAMAGVSPDHFTFPFVLKA---CARLQTGLDLHSLLFKLGFDS 117
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D Y+ N L+ Y C +DFA +F+EMPE
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKVFEEMPE 147
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNVMPP- 63
+L++ K+ Q+ A LK L ++++ S + T S S+ + S+F + P
Sbjct: 35 SLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPG 94
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
F YNT+IR + E++ L+ EML+ G+ PDN TYPFV+KA C L+G G
Sbjct: 95 SFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKA---CSLLGALKEGVQ 151
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ +FK GL D ++ N L+ MY C I+ A +F++M E
Sbjct: 152 IHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDE 193
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 72/106 (67%)
Query: 56 LFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
LF+ + P +F +NT+IR Y+K+ SI +F +MLK G+ PD LTYPF+VKAS + L
Sbjct: 71 LFSLLNPTIFNWNTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKR 130
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G S+H+ I K G SD++I N+L+ MYA+ +I A+ +FD MP
Sbjct: 131 ELGFSIHAHIIKHGFESDRFISNSLVHMYASFGDISCARYVFDGMP 176
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 52 FTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
R LF+ +MP + ++++LI Y K +++ +FD+M +G +P+ +T V+ A
Sbjct: 198 LARQLFD-LMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCAC 256
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +H + L + +L+ MYA C I+ A +F +P
Sbjct: 257 AHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAFDVFRGIP 308
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNV-MPPLFAYNTLIR 72
+H ++L A LKT ++ + R +L+ S P SL + RS+F+ + P FA+NT+IR
Sbjct: 2 NHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIR 61
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
A+A +S S+ LF +M G+ PD+ T+PFV+KA C + G +HSL+FK+G S
Sbjct: 62 AHADSS-PSFSLSLFSKMTMAGVSPDHFTFPFVLKA---CARLQTGLDLHSLLFKLGFDS 117
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D Y+ N L+ Y C +DFA F+EMPE
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKAFEEMPE 147
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI--SLHFTRSLFNNVMPPLFA 66
LIQ H + A L+ LD +TY++++ + S + + R L P +F
Sbjct: 16 LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL 75
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+IR C ESI+++ M K GL PD+ T+PFV+KA + L +G +HSL+
Sbjct: 76 FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G +D ++ +L+ +Y C ID A +FD++P+
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPD 171
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
RS+F+ ++ + +++++I+ YA E++ LF +ML GL+PD V+ + +
Sbjct: 264 RSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARL 323
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +LI + +G L+ MYA C +D A +F M
Sbjct: 324 GALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 56 LFNNVMPPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+++ FA + I Y E+I +F +L+ GLRPD+ + V+ A +
Sbjct: 165 VFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGD 224
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + I + G+ + ++ L+ Y C ++ A+++FD M E
Sbjct: 225 LRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLE 272
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-M 61
I +L++ KT +L L + TS+ + +SR F S +L++ +S+FN +
Sbjct: 8 ILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDR 67
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L+ +N++I+ Y+ + E++ ++ EM + G PD+ T+PFV+KA +G V
Sbjct: 68 PSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCV 127
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ I K G D Y LL+MYAAC +++ A +FD++P+
Sbjct: 128 HNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPK 168
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
AY + + E++ LF +M G PD T+ V+ A + G ++H+ + K L
Sbjct: 262 AYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTD 321
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEM 160
D IG L+ MYA + + A+ +F E+
Sbjct: 322 DTAIGTALVDMYAKSGDAERAQQVFSEL 349
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-M 61
I +L++ KT +L L + TS+ + +SR F S +L++ +S+FN +
Sbjct: 8 ILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDR 67
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L+ +N++I+ Y+ + E++ ++ EM + G PD+ T+PFV+KA +G V
Sbjct: 68 PSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCV 127
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ I K G D Y LL+MYAAC +++ A +FD++P+
Sbjct: 128 HNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPK 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL R LFN MP L A+N++I AY + + E++ LF +M G PD T+ V+
Sbjct: 263 SLKTARDLFNK-MPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVI 321
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G ++H+ + K L D IG L+ MYA + + A+ +F E+
Sbjct: 322 GACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSEL 375
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+ +LI C E+++++ +M + P+ +T V+ A + + G VH
Sbjct: 173 AWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRT 232
Query: 126 FKVGLHSDKYIGNT---------LLRMYAACKEIDFAKALFDEMP 161
++GL D + N+ ++ MYA C + A+ LF++MP
Sbjct: 233 GQMGL--DPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMP 275
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 95.9 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 28 KTSLDHNTYIISRFILTSLPI----SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSI 81
K LD++ I++ + S + SL F + +F N F YN+LIR YA +
Sbjct: 57 KQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCN 116
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+I LF M+ +G+ PD T+PF + A + G G +H LI K+G D ++ N+L+
Sbjct: 117 EAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 142 RMYAACKEIDFAKALFDEMPE 162
YA C E+D A+ +FDEM E
Sbjct: 177 HFYAECGELDSARKVFDEMSE 197
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N + Y + + E++ +F+ M+ +G+RPD ++ + + Q I G S H + +
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S I N L+ MY C D A +FD M
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++ ++I YA+ + +++ LF M++ + P+++T V+ A + + G V++
Sbjct: 202 SWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAF 261
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
I G+ + + + L+ MY C ID AK LFDE
Sbjct: 262 IRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 95.9 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 28 KTSLDHNTYIISRFILTSLPI----SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSI 81
K LD++ I++ + S + SL F + +F N F YN+LIR YA +
Sbjct: 57 KQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCN 116
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+I LF M+ +G+ PD T+PF + A + G G +H LI K+G D ++ N+L+
Sbjct: 117 EAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 142 RMYAACKEIDFAKALFDEMPE 162
YA C E+D A+ +FDEM E
Sbjct: 177 HFYAECGELDSARKVFDEMSE 197
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N + Y + + E++ +F+ M+ +G+RPD ++ + + Q I G S H + +
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S I N L+ MY C D A +FD M
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++ ++I YA+ + +++ LF M++ + P+++T V+ A + + G V++
Sbjct: 202 SWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAF 261
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
I G+ + + + L+ MY C ID AK LFDE
Sbjct: 262 IRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 1 MISRQIETLIQLSKTAHHH--HQLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRS 55
M SR++ L SK Q+ AL KT L+ + + +L +LP SLH+ R
Sbjct: 1 MNSRELHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARR 60
Query: 56 LFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCL 113
LF ++ P +F YNTLIR + + +++LF EM + + PD+ ++ F++KA+ C
Sbjct: 61 LFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCR 120
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H L GL S ++G TL+ MYA C + FA+ +FDEM E
Sbjct: 121 ALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIE 169
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I +A ++ F E+ + G+RP+ ++ V+ A Q G +H +
Sbjct: 236 SWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFV 295
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + N L+ Y+ C +D A+ +FD M
Sbjct: 296 EKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNM 330
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF TLI YA+ +C + + K+FDEM++ P+ + + +V A +C G
Sbjct: 141 LFVGTTLISMYAECACLVFARKVFDEMIE----PNIVAWNAIVAACFRC----EGVKDAE 192
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+F+ + N +L Y E+ A+ +F +MP
Sbjct: 193 QVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMP 230
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L R +F+N++ ++ +I A E+I+LF+EM ++ ++PD++T+ ++
Sbjct: 319 NLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILY 378
Query: 108 ASDQCLLIGVGGSVHS 123
A L+ +G S S
Sbjct: 379 ACSHAGLVDLGCSYFS 394
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPIS--LHFTRSLFN-NVMPP 63
+L++L + H +Q+ + + L +T+++++ I +SL S L + +S+ + +V P
Sbjct: 669 SLLKLCSSIKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPV 728
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+N LIR YA ++ +++ ++ M G+RP++LT+PF++KA C G VH
Sbjct: 729 PLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHV 788
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL D Y+ N L+ Y +CK+I A +FDEMPE
Sbjct: 789 EVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPE 827
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I + ++ E+I+ F +M G PD T ++ + +G+G +HS
Sbjct: 830 VVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHS 889
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + GL + +G L+ MYA + +AK +FD M E
Sbjct: 890 QVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKE 928
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVM 61
+R +++ L + H H A L+ D +Y+ S I +S + +TR +FN +
Sbjct: 20 NRLLQSFNSLKQLKHVH----AALLRLGFDQGSYLWSMIIRSSFDFNDTTYTRLIFNQIK 75
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P + YNT+IR + C ESI+ + M K G P+N T+PFV+KA + L +G
Sbjct: 76 EPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIM 135
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+L+ K+G + ++ +L+ +YA C ID A + D +PE
Sbjct: 136 MHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPE 177
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +I Y E+I LF ML+TGLRPD+ T V+ A Q + G +
Sbjct: 180 IVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDR 239
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + + + ++ +L+ +YA ++ A+ LFD M E
Sbjct: 240 YITENVMARNVFVTTSLVDLYAKHGNMEKARCLFDGMAE 278
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + +++ +I+ YA +++ LF +ML GL+PD+ + A +
Sbjct: 269 ARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCACAR 328
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ +G +L+ + ++ +G L+ MYA C + A +F
Sbjct: 329 LGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAKCGSMAKAWEVF 374
>gi|297746423|emb|CBI16479.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M + GL+PDN TYPFVVKA + L++G GG++HS+I K G SD+Y+GNTLLRMYA
Sbjct: 1 MQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDSDRYVGNTLLRMYANLNA 60
Query: 150 IDFAKALFDEM 160
+ A+ +F+EM
Sbjct: 61 VGLARRVFNEM 71
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSI 81
++ +K D + Y+ + + + ++ R +FN + + + +++++I Y +C
Sbjct: 34 SIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQA 93
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
+++ +F M+ +P+++T ++ A + L IGVG S+HS I + D +G +L
Sbjct: 94 DALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAIL 153
Query: 142 RMYAACKEIDFAKALFDEMPE 162
MY+ C I+ A +F+ + E
Sbjct: 154 EMYSKCGHIEKALKVFNSLTE 174
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 6/168 (3%)
Query: 1 MISRQIETLIQL---SKTAHHHHQLPALFLKTS-LDHNTYIISRFILTSLPISL-HFTRS 55
+ S Q L+Q +K+ QL A + S L++NTY+ ++ L
Sbjct: 57 LTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEV 116
Query: 56 LFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+ V+ F +N +IR YA ++S+ L+ EML G R DN TYPFV+KA LL
Sbjct: 117 IFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLL 176
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VHS + GL SD Y+GN+LL MYA ++ A+ +FD M E
Sbjct: 177 VEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAE 224
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF V ++N++I YA+ + ES++LF M G PD +T+ V+ A DQ
Sbjct: 317 ARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQ 376
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S+HS + K G ++ +G L+ MY+ C + ++ +FDEMP+
Sbjct: 377 IAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPD 427
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT+I YAK + S + +FD M K GL D T ++ A + G +H
Sbjct: 227 LTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHG 286
Query: 124 LIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + + +K+ N+L+ MY C + A+ LF+ +
Sbjct: 287 YAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERV 324
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS---LHFTRSLFNNV-MPPL 64
L++ K+ H Q+ L+T + +++F++ S LH+ +FN + +P L
Sbjct: 38 LLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGL 97
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F YN +I+A+ K +++ LF ++ + GL PDN TYPFV KA + G V+
Sbjct: 98 FIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGF 157
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL D Y+ N+L+ MYA + + +F+EMP+
Sbjct: 158 VVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQ 195
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCS 80
+K+ L+ +TY+ + + + + R +F MP + ++N LI Y K
Sbjct: 156 GFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEE-MPQRDVVSWNVLISGYVKCRRY 214
Query: 81 IESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
+++ +F M + + LRP+ T + A ++ +G +H + + L IGN
Sbjct: 215 EDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYV-REQLGFTIKIGNA 273
Query: 140 LLRMYAACKEIDFAKALFDEMP 161
L+ MY C + A+ +F++MP
Sbjct: 274 LVDMYCKCGHLSIAREIFNDMP 295
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F RS +V+ + +I Y + + +++ LF EM + PD T ++ Q
Sbjct: 322 FERSPVRDVV----LWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQ 377
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I + + D +G L+ MYA C I+ + +F+ + E
Sbjct: 378 LGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKE 428
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS---LHFTRSLFNNV-MPPL 64
L++ K+ H Q+ L+T + +++F++ S LH+ +FN + +P L
Sbjct: 38 LLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGL 97
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F YN +I+A+ K +++ LF ++ + GL PDN TYPFV KA + G V+
Sbjct: 98 FIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGF 157
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL D Y+ N+L+ MYA + + +F+EMP+
Sbjct: 158 VVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQ 195
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
QL A +KT L + ++++FI L S+ LF+ + P + +NT+ R YA
Sbjct: 38 QLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYA 97
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+T + + LF ++L +GL PD+ T+P ++KA C + G +H L K+GL + Y
Sbjct: 98 RTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVY 157
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ TL+ MY AC E+D A+ +FD++ E
Sbjct: 158 VCPTLINMYTACNEMDCARRVFDKIWE 184
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLI 71
K QL L +K L N Y+ I + + + R +F+ + P + YN +I
Sbjct: 135 KALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMI 194
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKV 128
YA+ S E++ LF E+ L+P ++T V+ + C L+G +G +H + K
Sbjct: 195 TGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSS---CALLGALDLGKWMHEYVKKN 251
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G + + L+ MYA C +D A +F+ M
Sbjct: 252 GFNRFVKVDTALIDMYAKCGSLDDAVCVFENM 283
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM-PPL 64
I LI+ KT H HQ A + L+ + +IIS F+ S+ S+ ++ S+FN ++ P
Sbjct: 12 ISLLIKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFL--SISTSVSYSTSIFNRLLNPST 69
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHS 123
F YN L++ ++K S I++ LF M ++ D TYP ++K L + G VH
Sbjct: 70 FLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHG 129
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ D Y+G++L+ Y CKEI A+ +FDE+PE
Sbjct: 130 SAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPE 168
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R+LF+ + A++ LI Y++ E++K+F EM+ ++PD ++ A Q
Sbjct: 252 ARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQ 311
Query: 112 CLLIGVGGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMP 161
+ V S + + + + + ++ L+ M+A C ++ A LF +MP
Sbjct: 312 LGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMP 362
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--LTSLP--ISLHFTRSLFNNV-MPPLFAYNTLIRAY 74
+QL L +K+S+ N +SR I T+ P ++L + RS+F ++ P ++ +N++IR Y
Sbjct: 23 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 82
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + +++ + EML+ G PD T+P+V+KA I G VH + K G +
Sbjct: 83 SNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 142
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
Y+ LL MY C E+++ +F+++P+
Sbjct: 143 YVSTCLLHMYMCCGEVNYGLRVFEDIPQ 170
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF+ MP L ++N++I Y++ + E++ +F +ML G+ PD +T+ V++
Sbjct: 250 LRTARYLFDG-MPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIR 308
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
AS +G S+H+ + K G D I L+ MYA + + AK F+++ +
Sbjct: 309 ASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEK 363
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 17/155 (10%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAY 67
IQ H +KT + N Y+ + + + +++ +F ++ + A+
Sbjct: 123 IQFGSCVH------GFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAW 176
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+LI + + ++I+ F EM G++ + ++ A +C F+
Sbjct: 177 GSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCF---------DPYFQ 227
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +L+ MYA C ++ A+ LFD MPE
Sbjct: 228 SKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPE 262
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--LTSLP--ISLHFTRSLFNNV-MPPLFAYNTLIRAY 74
+QL L +K+S+ N +SR I T+ P ++L + RS+F ++ P ++ +N++IR Y
Sbjct: 23 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 82
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + +++ + EML+ G PD T+P+V+KA I G VH + K G +
Sbjct: 83 SNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 142
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
Y+ LL MY C E+++ +F+++P+
Sbjct: 143 YVSTCLLHMYMCCGEVNYGLRVFEDIPQ 170
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF+ MP L ++N++I Y++ + E++ +F +ML G+ PD +T+ V++
Sbjct: 267 LRTARYLFDG-MPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIR 325
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
AS +G S+H+ + K G D I L+ MYA + + AK F+++ +
Sbjct: 326 ASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEK 380
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 20/165 (12%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAY 67
IQ H +KT + N Y+ + + + +++ +F ++ + A+
Sbjct: 123 IQFGSCVH------GFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAW 176
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+LI + + ++I+ F EM G++ + ++ A +C I G H F
Sbjct: 177 GSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHG--FL 234
Query: 128 VGLHSDKY----------IGNTLLRMYAACKEIDFAKALFDEMPE 162
GL D Y + +L+ MYA C ++ A+ LFD MPE
Sbjct: 235 QGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPE 279
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--LTSLP--ISLHFTRSLFNNV-MPPLFAYNTLIRAY 74
+QL L +K+S+ N +SR I T+ P ++L + RS+F ++ P ++ +N++IR Y
Sbjct: 22 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 81
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + +++ + EML+ G PD T+P+V+KA I G VH + K G +
Sbjct: 82 SNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 141
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
Y+ LL MY C E+++ +F+++P+
Sbjct: 142 YVSTCLLHMYMCCGEVNWGLRVFEDIPK 169
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ R LF+ MP L ++N++I Y++ + E++ +F +ML G+ PD +T+ V++
Sbjct: 249 MRTARYLFDG-MPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIR 307
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
AS +G ++H+ + K G D I L+ MYA + AK +F+++ +
Sbjct: 308 ASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEK 362
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPPL--FA 66
IQ H +KT + N Y+ + + + +++ +F ++ P L A
Sbjct: 122 IQFGSCVH------GFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDI-PKLNVVA 174
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +LI + + ++I+ F EM G++P+ ++ A +C
Sbjct: 175 WGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCF---------DPYC 225
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +L+ MYA C ++ A+ LFD MPE
Sbjct: 226 QSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPE 261
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNVMPP- 63
+L++ K+ Q+ A LK L ++++ S + + S S+ + S+F+ + P
Sbjct: 36 SLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPG 95
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F YNT+IR + E++ L+ EML+ G+ PDN TYPFV+KA + + G +H+
Sbjct: 96 SFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHA 155
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+FK GL D ++ N L+ MY C I+ A +F++M E
Sbjct: 156 HVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDE 194
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 7/162 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKT--SLDHNTYIISRF---ILTSLPISLHFTRSLFNNVMP 62
+ +Q K+ Q+ A +KT S D I +R SLPI + SL +
Sbjct: 42 STLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRT 101
Query: 63 P-LFAYNTLIRAYAKTSC-SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P L YN +IR A ++ SIE + ++ +ML G+ PDN T PFV+KA + + G
Sbjct: 102 PNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEE 161
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH K+GL SD Y+ NTL+RMYA C I A+ +FD P+
Sbjct: 162 VHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQ 203
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 51 HFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+F R +F MP + ++N++I A+ ES+ +F +M + G++PD++T V+ +
Sbjct: 257 NFARKVFQE-MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 315
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ +G VH+ + + + +D +IGN L+ MYA C ID A +F M
Sbjct: 316 CANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM 367
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
++ NTL+R YA + K+FD T + D +++ +++ + G ++
Sbjct: 175 VYVSNTLMRMYAVCDVIRSARKVFD----TSPQRDLVSWTTMIQGYVKMGFAREGVGLY- 229
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+I ++ D ++GN L+ MY C + +FA+ +F EMP
Sbjct: 230 IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMP 267
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 7/162 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKT--SLDHNTYIISRF---ILTSLPISLHFTRSLFNNVMP 62
+ +Q K+ Q+ A +KT S D I +R SLPI + SL +
Sbjct: 27 STLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRT 86
Query: 63 P-LFAYNTLIRAYAKTSC-SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P L YN +IR A ++ SIE + ++ +ML G+ PDN T PFV+KA + + G
Sbjct: 87 PNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEE 146
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH K+GL SD Y+ NTL+RMYA C I A+ +FD P+
Sbjct: 147 VHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQ 188
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 51 HFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+F R +F MP + ++N++I A+ ES+ +F +M + G++PD++T V+ +
Sbjct: 279 NFARKVFQE-MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 337
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ +G VH+ + + + +D +IGN L+ MYA C ID A +F M
Sbjct: 338 CANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM 389
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTL 70
S+ ++ +K L + Y+ + + + ++ + R +F+ L ++ T+
Sbjct: 138 SRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTM 197
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK-VG 129
I+ Y K + E + LF EM L+ D +T V+ + + + +G +H I +
Sbjct: 198 IQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSN 257
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
++ D ++GN L+ MY C + +FA+ +F EMP
Sbjct: 258 VNLDVFVGNALVDMYLKCGDANFARKVFQEMP 289
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 52 FTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
F+R+LF + P +F++N + RAY+++S E+I L++ ML+ G PDN ++PFV+KA
Sbjct: 79 FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ L+ G +HS K+G+H D ++ N L+ +++C ++ A+A+FD +P
Sbjct: 139 RLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLP 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 53 TRSLFNNVMPPLF----AYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVK 107
R++F+ ++P L ++N++I Y ++ ++K+F E+L G L PD +T +
Sbjct: 181 ARAVFD-MLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALS 239
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ L+ +G +H L G D ++G++L+ MY+ C +I+ A+ +FD +P
Sbjct: 240 VCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIP 293
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I YA++ E+I+LF EM G D T V+ A + G +H
Sbjct: 300 WTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCE 359
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + D N L+ MY+ C +I A +F
Sbjct: 360 RNSIEMDLNARNALIGMYSKCGDIQKALEIF 390
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 38 ISRFILTSLPI----SLHFTRSLFNN---VMPPLFAYNTLIRAYAKTSCSIESIKLFDEM 90
+++ I +S+ I SL + R+ F + M LF YN LIR YA ++I L+ +M
Sbjct: 62 LNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQM 121
Query: 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
L G+ PD T+PF++ A + L + G VH + K+GL D ++ N+L+ YA C ++
Sbjct: 122 LVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKV 181
Query: 151 DFAKALFDEMPE 162
D + LFD M E
Sbjct: 182 DLGRKLFDGMLE 193
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L YNT++ Y + + + + DEML+ G RPD +T + A Q + VG S H+
Sbjct: 297 LVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHA 356
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + GL I N ++ MY C + + A +F+ MP
Sbjct: 357 YVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP 394
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ ++ + ++ +LI Y+ S E++ LF +M + G+ P+ +T V+ A +
Sbjct: 185 RKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKL 244
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ +G V S I ++G+ + N L+ MY C +I A+ +FDE
Sbjct: 245 KDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDE 291
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT+I A + S E+I+LF EM G+ D +T + A + + V +
Sbjct: 429 LVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCT 488
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K +H D +G L+ M++ C + A +F M
Sbjct: 489 YIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRM 525
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNN-VMPPLF 65
+LI S H Q+ + + L HN +++++ + S + + + R LF+ P +F
Sbjct: 61 SLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVF 120
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +IR+Y++ + ++++++ M TG+ PD T+P+V+KA + L G+ +H I
Sbjct: 121 MWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQI 180
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G SD ++ N L+ +YA C I AK +FD +
Sbjct: 181 IKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGL 215
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I YA+ ++E++++F +M G++PD + +++A + G S+H
Sbjct: 220 IVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHG 279
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+GL + + +L YA C + AK+ FD+M
Sbjct: 280 FVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQM 316
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I YAK + E++ LF M+ ++PD++T V AS Q + + + +
Sbjct: 324 WNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVS 383
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
K SD ++ +L+ MYA C ++FA+ +FD
Sbjct: 384 KSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDR 416
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 22 LPALFLKTSLDHNTYIISRFILTS-LPISLH--FTRSLFNNVM-PPLFAYNTLIRAYAKT 77
+ A ++ +L +T++ S+ I +S + +S H + +F+ P LF +NT+IR Y+ +
Sbjct: 26 IQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSIS 85
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
I +I L+ +M G+ P++ T+ FV+KA + L + G +HS I KVGL + +
Sbjct: 86 DSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLV 145
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N L+++YAAC +D+A +FDEMPE
Sbjct: 146 NGLIKLYAACGCMDYACVMFDEMPE 170
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA- 66
L++L + H Q+ +K LD T +++ I L + + + +F+ + P A
Sbjct: 120 LLRLCEGQELHSQI----VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSAS 175
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++T++ YA+ ++E++KLF EM + D T VV + +G VHS +
Sbjct: 176 WSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMD 235
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G+ D +G L+ MY+ C +D A +F M E
Sbjct: 236 KEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAE 271
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASD 110
R LF+ + P LF++N +IR Y + S +++ LF +ML +G R PDN TYPFV+KA
Sbjct: 75 ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
LL +G +H+ G SD ++ N+L+ MY C E++ A+ +FD M E
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRE 186
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT+I Y K C E++ +FD M+ G+ PD T V+ + VG VH+
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA 248
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ L D + N+LL MYA C +D A+ +F EM +
Sbjct: 249 LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDK 287
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 46/96 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I S ++I+LF +ML + P++ T ++ A + ++H +
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S + L+ +Y+ C ++ A +F+ +P+
Sbjct: 454 RSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPK 489
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASD 110
R LF+ + P LF++N +IR Y + S +++ LF +ML +G R PDN TYPFV+KA
Sbjct: 75 ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
LL +G +H+ G SD ++ N+L+ MY C E++ A+ +FD M E
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRE 186
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT+I Y K C E++ +FD M+ G+ PD T V+ + VG VH+
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA 248
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ L D + N+LL MYA C +D A+ +F EM +
Sbjct: 249 LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDK 287
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP- 63
+L Q + ALF+ L N Y IS+ F S SL + +F+ + P
Sbjct: 9 SLAQSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPN 68
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
LFAYNTLIRAY+++S ++ F ML + PD T+PF++ A L + +G +H
Sbjct: 69 LFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIH 128
Query: 123 SLIFKVGL-HSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + K G+ SD+++ L+R YA C + A+ LFDE+P
Sbjct: 129 NWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIP 168
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 54 RSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + P L +N L+ Y + + E++ F ML +G+ PD +K Q
Sbjct: 161 RKLFDEI-PNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQ 219
Query: 112 CLLIGVGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H + K L +D +IG L+ MYA C ID + +F+ M
Sbjct: 220 LGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGM 269
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 28 KTSLDHNTYIISRFILTSLPI----SLHFTRSLFNN--VMPPLFAYNTLIRAYAKTSCSI 81
K LD + I++ + S + SL F + +F N F YN+LIR YA +
Sbjct: 56 KQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCK 115
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+I LF M+ +G+ PD T+PF + + G G +H LI K+ D ++ N+L+
Sbjct: 116 EAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLV 175
Query: 142 RMYAACKEIDFAKALFDEMPE 162
YA C E+D A+ +FDEM E
Sbjct: 176 HFYAECGELDCARKVFDEMSE 196
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N + Y + + E++ + + M+ +G+RPD ++ + + Q I G S H + +
Sbjct: 305 NAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 364
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S I N L+ MY C D A +FD M
Sbjct: 365 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 397
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVK 107
L R +F+ + + ++ ++I YA+ + +++ LF M++ + P+++T V+
Sbjct: 184 LDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVIS 243
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
A + + G V+ I G+ + + + L+ MY C ID AK LFDE
Sbjct: 244 ACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDE 295
>gi|356515240|ref|XP_003526309.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 560
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 47 PISLH-------FTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 98
PI+L + + +F+ V+ F +N++IR YA + +++ L+ EML G +PD
Sbjct: 6 PITLQPACGHMPYAQHIFHQIVLKNSFLWNSMIRGYACNNSPSKALILYREMLHFGHKPD 65
Query: 99 NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
N TYPFV+KA LL +G VH+L+ GL D Y+GN++L MY ++ A+ +FD
Sbjct: 66 NFTYPFVLKACGDLLLREIGRKVHALVVVGGLEEDVYVGNSILSMYFTFGDVAAARVMFD 125
Query: 159 EMP 161
+MP
Sbjct: 126 KMP 128
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 48 ISLHFT-------RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 98
+S++FT R +F+ MP L ++NT++ + K + + ++F +M + G D
Sbjct: 108 LSMYFTFGDVAAARVMFDK-MPVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGD 166
Query: 99 NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS---DKYIGNTLLRMYAACKEIDFAKA 155
+T ++ A + + G +H + + G + + ++ N+++ MY C+ + FA+
Sbjct: 167 GITLLALLSACGDVMDLKAGREIHGYVVRNGGNRRLCNGFLMNSIICMYCNCESMSFARK 226
Query: 156 LFD 158
LF+
Sbjct: 227 LFE 229
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ F R LF + + + ++N+LI Y K + ++LF M+ G PD +T V+
Sbjct: 220 SMSFARKLFEGLRVKDVVSWNSLISGYEKCGDAFLVLELFGRMVVVGAVPDEVTVTSVLG 279
Query: 108 ASDQCLLIGVGGSVHSLIFK 127
A +Q + +G SV S + K
Sbjct: 280 ACNQISALRLGASVQSYVVK 299
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P +F++N +IR Y+ + I S+ +F +ML+ G+ PD LTYPF+VKAS + G SV
Sbjct: 77 PTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSV 136
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H+ I K G SD++I N+L+ MYA+C I +A +F+ M
Sbjct: 137 HAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESM 175
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---------SLPISLHFTRS 55
Q+ +L++ + +H ++ A L + L ++++ + + S SL F
Sbjct: 32 QLLSLLKHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCH 91
Query: 56 LFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+ MP +N +IR Y+ + E+I LF EM + G+RP+NLT+PF++KA +
Sbjct: 92 FHSATMP----WNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATL 147
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G H++ K GL D Y+ NTL+ Y +CK + A+ +FDEM E
Sbjct: 148 QEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTE 194
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIR 72
T Q A+ +K LD + Y+ + I + R +F+ + L ++N +I
Sbjct: 146 TLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWNAVIT 205
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
A + C E+I F +M G PD T ++ A + + +G VHS + G+
Sbjct: 206 ACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVL 265
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFD 158
+ +G + MYA ++ A+ +F+
Sbjct: 266 NVQLGTAFVDMYAKSGDVGCARHVFN 291
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Query: 3 SRQIETLI--QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS---LPISLHFTRSLF 57
SR+ + LI +L + H Q+ +SL ++++IIS + S L L F R+L
Sbjct: 11 SRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLL 70
Query: 58 ---NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
++ P +N L R Y+ + +ESI ++ EM + G++P+ LT+PF++KA L
Sbjct: 71 LHSSDSTPS--TWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLG 128
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + K G D Y+GN L+ +Y CK+ A+ +FDEM E
Sbjct: 129 LTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTE 176
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Query: 41 FILTSLPIS--LHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTG-L 95
F L SLP + + +F+ + P+ F +NTLIR YA+ S+ ++ L+ EM +G +
Sbjct: 58 FYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFV 117
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PD TYPF++KA + + +G ++HS++ + G S Y+ N+LL +YA C ++ A
Sbjct: 118 EPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYK 177
Query: 156 LFDEMPE 162
+FD+MPE
Sbjct: 178 VFDKMPE 184
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+N++I +A+ E++ L+ EM G++PD T ++ A + + +G H
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHV 246
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ KVGL + + N LL +YA C ++ AK LFDEM
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283
>gi|297733701|emb|CBI14948.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV 60
+I Q +T+ L++ H H L LK + N + S IL LP S+ + S+F +
Sbjct: 29 LILEQCKTIRDLNEI-HAHLIKTRLLLKPKVAEN-LLESAAIL--LPTSMDYAVSIFRQI 84
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P AYN +IR + E+I LF EM + ++PD T+P ++K + + G
Sbjct: 85 DEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGE 144
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+LI K G S ++ NTL+ MYA C E++ A+ +FDEM E
Sbjct: 145 QIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSE 187
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV 60
+I Q +T+ L++ H H L LK + N + S IL LP S+ + S+F +
Sbjct: 29 LILEQCKTIRDLNEI-HAHLIKTRLLLKPKVAEN-LLESAAIL--LPTSMDYAVSIFRQI 84
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P AYN +IR + E+I LF EM + ++PD T+P ++K + + G
Sbjct: 85 DEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGE 144
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+LI K G S ++ NTL+ MYA C E++ A+ +FDEM E
Sbjct: 145 QIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSE 187
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKT 77
Q+ AL +K + ++ + I + + + R +F+ + + +N++ Y K+
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E +KLF EML+ +R D +T V+ A + + +G ++ + + GL + +
Sbjct: 204 GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI 263
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
+L+ MYA C ++D A+ LFD+M
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQM 286
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + A++ +I Y++ S E++ LF EM K + P+ +T +V
Sbjct: 279 ARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT---MVSILSS 335
Query: 112 CLLIGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
C ++G G VH I K + +G L+ YA C ++ + +F +MP
Sbjct: 336 CAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 41 FILTSLPIS--LHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL- 95
F L SLP + + +F+ + P+ F +NTLIR YA+ SI + L+ EM +GL
Sbjct: 58 FYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLV 117
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PD TYPF++KA + +G ++HS++ + G S Y+ N+LL +YA C ++ A
Sbjct: 118 EPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYK 177
Query: 156 LFDEMPE 162
+FD+MPE
Sbjct: 178 VFDKMPE 184
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+N++I +A+ E++ L+ EM G++PD T ++ A + + +G VH
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ KVGL + + N LL +YA C ++ AK LFDEM
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTL 70
SK + QL A F + +N + ++ + L ++ SL R+LF+ + LF +N L
Sbjct: 60 SKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVL 119
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
IR YA +I L+ +ML GLRPDN T PFV+KA IG G S+H + K G
Sbjct: 120 IRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGW 179
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
D ++G L+ MYA C + A +FD++
Sbjct: 180 ERDLFVGAALIDMYAKCGCVMDAGRVFDKI 209
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ AYA+ ESI L EM G+RP T V+ +S + G +H +
Sbjct: 217 WNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGW 276
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S+ + L+ MYA C + A ALF+ + E
Sbjct: 277 RHGFQSNDKVKTALIDMYAKCGSVKVALALFERLRE 312
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I YA ++ ++ LFD+M K RPD++T+ V+ A + L+ G ++++
Sbjct: 315 VVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYN 373
Query: 124 LIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L+ + G+ ++ + C ++D A L M
Sbjct: 374 LMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNM 411
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---------SLPISLHFTRS 55
Q+ +L+ + +H ++ A L + L ++++ + + S SL F
Sbjct: 32 QLLSLLNHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCH 91
Query: 56 LFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+ MP +N +IR Y+ + E+I LF EM + G+RP+NLT+PF++KA +
Sbjct: 92 FHSATMP----WNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATL 147
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G H++ K GL D Y+ NTL+ Y +CK + A+ +FDEM E
Sbjct: 148 QEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTE 194
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIR 72
T Q A+ +K LD + Y+ + I + R +F+ + L ++N +I
Sbjct: 146 TLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWNAVIT 205
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
A + C E+I F +M G PD T ++ A + + +G VHS + G+
Sbjct: 206 ACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVL 265
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFD 158
+ +G + MYA ++ A+ +F+
Sbjct: 266 NVQLGTAFVDMYAKSGDVGCARHVFN 291
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNVMPP- 63
+L++ K+ ++ A LK L ++++ S + + S S+ + S+F + P
Sbjct: 36 SLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPG 95
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F YNT+IR + E++ L+ EML+ G+ PDN TYPFV+KA + + G +H+
Sbjct: 96 SFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHA 155
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+F GL D ++ N L+ MY C I+ A +F++M E
Sbjct: 156 HVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDE 194
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI---SLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
+L A ++ + L + Y +S+ +L S I L F +F+ + P F +N LIR A+
Sbjct: 471 RLHAYYIVSGLYNCHYAMSK-VLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 529
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ ++I + + G+ PDNLT+PF++KA + + G +H+ I K+GL SD ++
Sbjct: 530 SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 589
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
N+L+ +YAAC + +A+++FDEM
Sbjct: 590 SNSLIHLYAACGNLCYARSVFDEM 613
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ + R LF MP + +++ +I Y + +E++ LF M+ G+ P +T VV
Sbjct: 171 VEYARLLFER-MPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVP 229
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A I +G ++H K GL D +GN+L+ +YA I + +FDEM
Sbjct: 230 ALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEM 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + L +++++I Y++ + +++++F +M + ++PD + VV +
Sbjct: 739 RKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHL 798
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH + + + +D + N+L+ MY C A +F EM E
Sbjct: 799 GALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKE 848
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS-VH 122
L ++ ++I +A S+++++LF +M + G+RP+ +T+ V+ A L+ G +
Sbjct: 288 LVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFK 347
Query: 123 SLIFKVGLHSD-KYIG 137
S+I++ ++ D K+ G
Sbjct: 348 SMIYEYNINPDVKHFG 363
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L + RS+F+ V+ + ++N+LI Y++ + + + LF M G++ D +T VV
Sbjct: 602 NLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVS 661
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + + + I + D Y+GNTL+ + ++ A+ +F M
Sbjct: 662 ACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM 714
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Query: 1 MISRQIETLIQLSKTAHHHHQLP---ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSL 56
+ S+ +E LS + +QL A L+ LD + Y+++ + +L S ++++ +
Sbjct: 11 VFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLV 70
Query: 57 FNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
F+ V P +F +NT+IR C ++I L+ M G P+N T PFV+KA + L +
Sbjct: 71 FSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDV 130
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +HSL+ K G D ++ +LL +Y C D A +FD++P+
Sbjct: 131 RLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPD 177
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--------PLFAYNTLIR 72
++ +L +K DH+ F+ TSL +SL+ F++ + + ++ +I
Sbjct: 135 KIHSLLVKAGYDHDV-----FVKTSL-LSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVG 129
Y + E+I F ++L+ GL+PD+ + +VK C +G G + I G
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFS---LVKVLAACARLGDCTSGEWIDRYISDSG 245
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + ++ +LL MY C ++ A +F MPE
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPE 278
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 55 SLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+L + MP + +++T+I+ YA +++ LF +M L+PD T V+ A
Sbjct: 270 NLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATL 329
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G SL+ + S+ +G L+ MY+ C + A +F M
Sbjct: 330 GALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM 377
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Query: 1 MISRQIETLIQLSKTAHHHHQLP---ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSL 56
+ S+ +E LS + +QL A L+ LD + Y+++ + +L S ++++ +
Sbjct: 11 VFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLV 70
Query: 57 FNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
F+ V P +F +NT+IR C ++I L+ M G P+N T PFV+KA + L +
Sbjct: 71 FSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDV 130
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +HSL+ K G D ++ +LL +Y C D A +FD++P+
Sbjct: 131 RLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPD 177
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--------PLFAYNTLIR 72
++ +L +K DH+ F+ TSL +SL+ F++ + + ++ +I
Sbjct: 135 KIHSLLVKAGYDHDV-----FVKTSL-LSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVG 129
Y + E+I F ++L+ GL+PD+ + +VK C +G G + I G
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFS---LVKVLAACARLGDCTSGEWIDRYISDSG 245
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + ++ +LL MY C ++ A +F MPE
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPE 278
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 55 SLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+L + MP + +++T+I+ YA +++ LF +M L+PD T V+ A
Sbjct: 270 NLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATL 329
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G SL+ + S+ +G L+ MY+ C + A +F M +
Sbjct: 330 GALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKK 379
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS----------LHFTRSLFNNVMPP-LFAYNTLIR 72
L+T L + ++ SR + +L + L + +F+ + P LF +N LIR
Sbjct: 33 GFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVLIR 92
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
++ + ++ + +MLK+ + PDN+T+PF++KAS + + VG HS I + G +
Sbjct: 93 CFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQN 152
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMP 161
D Y+ N+L+ MYA C I A +F +MP
Sbjct: 153 DVYVENSLVHMYANCGLIAAAGRIFGQMP 181
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP LF ++ +I YAK +C ++I LF+ M + G+ + V+ +
Sbjct: 204 AREMFDE-MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCA 262
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G H + K + + +G L+ MY C EI+ A +F+E+P+
Sbjct: 263 HLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPD 314
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 41 FILTSLPIS--LHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL- 95
F L SLP + + +F+ + P+ F +NTLIR YA+ SI + L+ EM +GL
Sbjct: 58 FYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLV 117
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PD TYPF++KA + +G ++HS++ + G S Y+ N+LL +YA C ++ A
Sbjct: 118 EPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYK 177
Query: 156 LFDEMPE 162
+FD+MPE
Sbjct: 178 VFDKMPE 184
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+N++I +A+ E++ L+ EM G++PD T ++ A + + +G VH
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ KVGL + + N LL +YA C ++ AK LFDEM
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 15/150 (10%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFA--------------YNTLIR 72
L+ L + +I+ +F L ++P+ H +L++ PLF+ ++++I
Sbjct: 41 LRQGLQLHAHIL-KFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVIS 99
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
A+A+ + +++ F ML G+RPD+ YP KA VG SVH L K G +
Sbjct: 100 AFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYC 159
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D ++G++L+ MYA C EI A+ LFDEMPE
Sbjct: 160 DVFVGSSLVDMYAKCGEIGDARHLFDEMPE 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP + +++ +I YA+ +E++ LF + L + ++ T+ V++
Sbjct: 180 ARHLFDE-MPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCS 238
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G +H L K+ S ++G+ L+ +Y+ C I+ A +FDE+P
Sbjct: 239 SSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIP 289
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 15/150 (10%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFA--------------YNTLIR 72
L+ L + +I+ +F L ++P+ H +L++ PLF+ ++++I
Sbjct: 41 LRQGLQLHAHIL-KFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVIS 99
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
A+A+ + +++ F ML G+RPD+ YP KA VG SVH L K G +
Sbjct: 100 AFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYC 159
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D ++G++L+ MYA C EI A+ LFDEMPE
Sbjct: 160 DVFVGSSLVDMYAKCGEIGDARHLFDEMPE 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP + +++ +I YA+ +E++ LF + L + ++ T+ V++
Sbjct: 180 ARHLFDE-MPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCS 238
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G +H L K+ S ++G+ L+ +Y+ C I+ A +FDE+P
Sbjct: 239 SSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIP 289
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLF 65
T ++L K H L LK S D ++++ S I L S + +F+ + L
Sbjct: 241 TFLELGKLIH------GLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLG 294
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N+++ A A+ + + LF+EM G++P+ +++ V+ A L+ G SL+
Sbjct: 295 LWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLM 354
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G+ + +L+ + ++ A ++ +MP
Sbjct: 355 RDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMP 390
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
Query: 24 ALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSC 79
ALF+ L N Y IS+ F S SL + +F+ + P LFAYNTLIRAY+++S
Sbjct: 25 ALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLIRAYSRSST 84
Query: 80 SIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-HSDKYIG 137
++ F ML + PD T+PF++ A L + +G +H+ + K G+ SD+++
Sbjct: 85 PQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQ 144
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
L+R YA C + A+ LFDE+P
Sbjct: 145 TALVRFYAECCAMGDARKLFDEIP 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 53 TRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ + P L +N L+ Y + + E++ F ML +G+ PD +K
Sbjct: 160 ARKLFDEI-PNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCA 218
Query: 111 QCLLIGVGGSVHSLIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q + G +H + K L +D +IG L+ MYA C ID + +F+ M
Sbjct: 219 QLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGM 269
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLF-NNVMPPL 64
+L++ H HQ L LD + ++SRFI +SL S H++ S+F + P +
Sbjct: 46 SLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS-HYSHSIFTHKTRPDI 104
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+ YNT+I+A + + E+I L++ +L + LR D + PFV+KA + L I VG +H
Sbjct: 105 YLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQ 164
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
GL SD ++ L++MY++C + A+ LFD
Sbjct: 165 AIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFD 198
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF MP + ++ +I YA+ E+I +F M + PD + + A
Sbjct: 224 ARHLFER-MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACA 282
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H+ I K GL + N L+ MYA C +I+ A +F M
Sbjct: 283 HLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
++++ + S+++ S+F + P F +NT+IR Y E++ ++EM++ G
Sbjct: 69 VLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGN 128
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PDN TYP ++KA + I G +H +FK+GL +D ++ N+L+ MY C E++ + A
Sbjct: 129 EPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSA 188
Query: 156 LFDEM 160
+F+++
Sbjct: 189 VFEKL 193
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI---SLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
+L A ++ + L + Y +S+ +L S I L F +F+ + P F +N LIR A+
Sbjct: 6 RLHAYYIVSGLYNCHYAMSK-VLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 64
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ ++I + + G+ PDNLT+PF++KA + + G +H+ I K+GL SD ++
Sbjct: 65 SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 124
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
N+L+ +YAAC + +A+++FDEM
Sbjct: 125 SNSLIHLYAACGNLCYARSVFDEM 148
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + L +++++I Y++ + +++++F +M + ++PD + VV +
Sbjct: 274 RKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHL 333
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH + + + +D + N+L+ MY C A +F EM E
Sbjct: 334 GALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKE 383
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L + RS+F+ V+ + ++N+LI Y++ + + + LF M G++ D +T VV
Sbjct: 137 NLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVS 196
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + + + I + D Y+GNTL+ + ++ A+ +F M
Sbjct: 197 ACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM 249
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
++++ + S+++ S+F + P F +NT+IR Y E++ ++EM++ G
Sbjct: 69 VLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGN 128
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PDN TYP ++KA + I G +H +FK+GL +D ++ N+L+ MY C E++ + A
Sbjct: 129 EPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSA 188
Query: 156 LFDEM 160
+F+++
Sbjct: 189 VFEKL 193
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLF-NNVMPPL 64
+L++ H HQ L LD + ++SRFI +SL S H++ S+F + P +
Sbjct: 46 SLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS-HYSHSIFTHKTRPDI 104
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+ YNT+I+A + + E+I L++ +L + LR D + PFV+KA + L I VG +H
Sbjct: 105 YLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQ 164
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
GL SD ++ L++MY++C + A+ LFD
Sbjct: 165 AIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFD 198
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF MP + ++ +I YA+ E+I +F M + PD + + A
Sbjct: 224 ARHLFER-MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACA 282
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H+ I K GL + N L+ MYA C +I+ A +F M
Sbjct: 283 HLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNV-MPPL 64
+L+Q SKT+ Q+ A + T+L +T+ SR + + S +++++ +F + P
Sbjct: 16 SLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNS 75
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F NT+++ Y ++S +++ + EM K GL DN TYPFV+KA + GG V
Sbjct: 76 FICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGE 135
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G D ++ N L+ MY C E +A+A+FD E
Sbjct: 136 AVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSE 173
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R +FB ++ + +++ +I YA S E++ LF +ML G++PD ++ V A
Sbjct: 255 MEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + G +H + + + D + L+ MY C D A+ +F+ MPE
Sbjct: 315 CSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPE 368
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 67/100 (67%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
PP + +N +IR ++ + +SI+++ ++L++G PD++TYPF++K+S + +GGS+
Sbjct: 817 PPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKSSSRLSNREIGGSL 876
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H + K GL D +I NTL+ MY + ++ A+ LFDEMP
Sbjct: 877 HCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMP 916
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASD 110
R +F+ + M + ++++I Y K+ E++++FD+M++ G + + +T V+ A
Sbjct: 939 ARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACA 998
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ G VH I V L + +L+ MYA C I A +F
Sbjct: 999 HLGELNRGKVVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWGVF 1045
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
F + N P + AY+ LI+A K + E+ LF+EM+ GL+P TY ++
Sbjct: 602 FRDTCANGHCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMIDG 658
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT 101
N ++P L YN +I K S ES+KL EM G+ P T
Sbjct: 468 NGLIPSLMMYNNIIEGMCKEGRSEESLKLLAEMKDAGVEPSQYT 511
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 8 TLIQLSKTAHHHHQLPAL------FLKTSLDHNTYIISR---FILTSLPISLHFTRSLFN 58
TL L H+ H L + T +T+ SR F S I L ++ +F+
Sbjct: 28 TLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFD 87
Query: 59 NVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ F +NT++RAY +++ + +++ L+ M+K + PDN TYP VV+A LL
Sbjct: 88 RIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG 147
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G +H + KVG SD Y+ NTL+ MYA C + A+ LFDE P
Sbjct: 148 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESP 191
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LFN + + +++ LI Y + E++ +F EM G+R D + V+ A +
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 279
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA----ACKEIDFAKALFDEMPE 162
+ G +H L+ ++G+ S + N L+ MY+ C ++ A +F+ M E
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEE 331
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLP--ISLHFTRSLF---N 58
Q ++L + H Q+ +SL ++++IIS I ++SL L F R+L +
Sbjct: 15 QCLIFLKLCSSIKHLLQIHGQIHVSSLQNDSFIISELIRVSSLSHTKDLAFARTLLLHSS 74
Query: 59 NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P +N L R Y+ + +ESI ++ EM + ++P+ LT+PF++KA L + G
Sbjct: 75 DSTPS--TWNMLTRGYSSSDTPVESIWVYSEMKRRRIKPNKLTFPFLLKACASFLGLTAG 132
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + K G SD Y+GN L+ +Y +CK+ A+ +FDEM E
Sbjct: 133 RQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTE 176
>gi|224058585|ref|XP_002299553.1| predicted protein [Populus trichocarpa]
gi|222846811|gb|EEE84358.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 5/160 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFN-NVMPP 63
+L+++ K QL A K N ++R + S ++++ +S+FN + P
Sbjct: 30 SLLEICKFTTEFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPN 89
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
FAYN +IR YA+ ++ LF ML P+ LT+PFV+KA Q I G VH
Sbjct: 90 TFAYNVMIRGYAQREKPENALSLFYSMLCNANSGPNKLTFPFVLKACSQVRAIEEGKQVH 149
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+FK GL D ++ N+L+ MY++C I FA +F+++ +
Sbjct: 150 GLVFKHGLSEDLFVQNSLINMYSSCGLIGFACQVFNKIDD 189
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIIS----RFILTSLPISLHFTRSL 56
MI +++ +L+Q + + Q+ AL +KTSLD N ++++ R S L + RS+
Sbjct: 1 MIGKKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSV 60
Query: 57 FNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLL 114
F+ + P F +NT+IRAY + ES+ LF +M P D+ + V++A +
Sbjct: 61 FDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKD 120
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G G +H+ + K+GL SD ++ L+ MYA +I+ A+ + DEM
Sbjct: 121 PGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEM 166
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +++++I AYAK S E+++LF EM + PD +T V+ A +G+G +H
Sbjct: 233 LISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHE 292
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + + D +G +L+ MYA C +ID + +F+ M
Sbjct: 293 CIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGM 329
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 8 TLIQLSKTAHHHHQLPAL------FLKTSLDHNTYIISR---FILTSLPISLHFTRSLFN 58
TL L H+ H L + T +T+ SR F S I L ++ +F+
Sbjct: 40 TLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFD 99
Query: 59 NVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ F +NT++RAY +++ + +++ L+ M+K + PDN TYP VV+A LL
Sbjct: 100 RIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG 159
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G +H + KVG SD Y+ NTL+ MYA C + A+ LFDE P
Sbjct: 160 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESP 203
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ R+LF+ VMP + +++ +I YA+ C E++ LF EM +RPD V+
Sbjct: 385 SVEKARALFD-VMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVI 443
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + G VH+ I K GL + +G TLL MY C ++ A +F+ M E
Sbjct: 444 SACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEE 499
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LFN + + +++ LI Y + E++ +F EM G+R D + V+ A +
Sbjct: 260 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 319
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G +H L+ ++G+ S + N L+ MY+ EI A+ LF+
Sbjct: 320 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFN 363
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNV-MPPL 64
L++ K+ Q+ LK L +++ S + T S S+ + S+F + P
Sbjct: 38 LVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTT 97
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +NT+IR Y +I L+++ML+ + PDN TYP V+KA + +I G +H
Sbjct: 98 FDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGH 157
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+FK+GL D Y+ N+L+ MY C++I+ + A+F M +
Sbjct: 158 VFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQ 195
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ F+K+ +D ++Y I + IL S+ +L + R L P F +NTL+R Y++
Sbjct: 190 QIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 249
Query: 77 TSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S+ +F EM++ G + PD+ ++ FVVKA+ + G +H K GL S +
Sbjct: 250 SDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLF 309
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ TL+ MY C + FA+ +FDEMP+
Sbjct: 310 VATTLIGMYGECGCVGFARKVFDEMPQ 336
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I ++ ES F E+L+ +RP+ ++ V+ A Q G ++H +
Sbjct: 403 SWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFV 462
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + N L+ MY+ C + A+ +F+ M E
Sbjct: 463 EKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQE 499
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPI--SLHFTRSLFNN 59
S++ L++ K +H Q A T LD NT+ +SR + S P SL + +F
Sbjct: 5 SKRCLVLLEKCKNVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFER 64
Query: 60 VM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P L NT+I+ + + +F +ML GL PDN T P+V+KA +G
Sbjct: 65 IHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLG 124
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH K+GL D ++GN+L+ MY+ C ++ A+ +FDEMP
Sbjct: 125 KMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPR 168
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I Y + SC E + LF + T + PD + ++ A + +G +H +
Sbjct: 205 WGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLN 264
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +LL MYA C ++ AK LFD MPE
Sbjct: 265 RKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPE 300
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L + LF++ MP + +N +I A ++K+F EM KTG++PD++T+ V
Sbjct: 287 NLELAKRLFDS-MPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVF 345
Query: 107 KA 108
A
Sbjct: 346 TA 347
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 31 LDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFD 88
L H+ Y+++ + S S ++TR LF+ + P +F +NT+IR C ++I+ +
Sbjct: 42 LCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYG 101
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
M G P+N T+PFV+KA + L + +G +H+L+ K G D ++ +L+ +YA C
Sbjct: 102 LMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCG 161
Query: 149 EIDFAKALFDEMPE 162
++ A +FD++P+
Sbjct: 162 YLEDAHKVFDDIPD 175
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I Y E+I +F +L+ L PD+ T V+ A Q + G +H I
Sbjct: 180 SWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCI 239
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++G+ + ++G +L+ MYA C ++ A+++FD MPE
Sbjct: 240 MEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 276
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F+ MP + ++ +I+ YA E+I LF +M + ++PD T V+ A +
Sbjct: 268 RSVFDG-MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACAR 326
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G V L+ + + +G L+ +YA C + A +F M E
Sbjct: 327 LGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKE 377
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 28 KTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIK 85
+ L H+ Y+++ + S S ++TR LF+ + P +F +NT+IR C ++I+
Sbjct: 39 RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS---------DKYI 136
+ M G P+N T+PFV+KA + L + +G +H+L+ K +H + ++
Sbjct: 99 FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFV 158
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
G +L+ MYA C ++ A+++FD MPE
Sbjct: 159 GTSLVDMYAKCGNMEKARSVFDGMPE 184
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL-TSLPIS--LHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
Q+ A + + NT + I +S+ IS + + LF ++ P F +NT+IR A+
Sbjct: 31 QIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQ 90
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ + +I L+ +M +RPD T+PFV+KA + + +G VH +F++G S+ ++
Sbjct: 91 SPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFV 150
Query: 137 GNTLLRMYAACKEIDFAKALFD 158
NTL+ +A C ++ A+ALFD
Sbjct: 151 RNTLIYFHANCGDLAVARALFD 172
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ V + +N +I Y + +++++F+EM G PD +T ++ A
Sbjct: 230 RKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDL 289
Query: 113 LLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I ++G +GN L+ MYA C I A +F M E
Sbjct: 290 GDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMRE 340
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT----SLPISLHFTRSLFNNV- 60
I + +++ + HQ A LK+ L H+T+ SR I + S ++ + S+F+ +
Sbjct: 10 ILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP 69
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P + +NT+IRAYA + ++ +F +ML + PD T+ F +K+ + G
Sbjct: 70 NPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQ 129
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K GL D +I NTL+ +YA+C I+ A+ L D M E
Sbjct: 130 IHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLE 171
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y+ E + LF++M G++PDN T V+ A + G VH+ I
Sbjct: 238 SWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYI 297
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
K G+ D ++ L+ MY+ C I+ A +F+
Sbjct: 298 DKNGISIDGFVATALVDMYSKCGSIEKALEVFN 330
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 12/167 (7%)
Query: 3 SRQIETLIQL---SKTAHHHHQLPA-LFLKTSLDHNTYIISRF-----ILTSLPISLHFT 53
S Q TL+Q SK+ QL A + +L NTY+ ++ + +P + H
Sbjct: 22 SLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIF 81
Query: 54 RSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
+ V+ F +N++IR YA + ++ L+ +ML G +PDN TYPFV+KA L
Sbjct: 82 DQI---VLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLL 138
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L +G VH+L+ GL D Y+GN++L MY +++ A+ +FD M
Sbjct: 139 LREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRM 185
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R LF + + + ++N+LI Y K + ++++LF M+ G PD +T V+
Sbjct: 278 SVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLA 337
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A +Q + +G +V S + K G + +G L+ MYA C + A +FDEMPE
Sbjct: 338 ACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPE 392
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT++ + K + + ++F +M + G D T ++ A + + VG +H
Sbjct: 190 LTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHG 249
Query: 124 LIFKVGLHS---DKYIGNTLLRMYAACKEIDFAKALFD 158
+ + G + ++ N+++ MY C+ + A+ LF+
Sbjct: 250 YVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFE 287
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 29 TSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFD 88
S+D N Y+++ + + + + F L + PP + +N +IR ++ + +SI ++
Sbjct: 788 VSVDRN-YMLAVNVTSDVDYAYKFLSKLSD---PPNYGWNFVIRGFSNSRNPEKSISVYI 843
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
+ML+ GL PD++TYPF++K+S + +GGS+H + K GL D +I NTL+ MY + +
Sbjct: 844 QMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFR 903
Query: 149 EIDFAKALFDEMP 161
+ A+ LFDEMP
Sbjct: 904 DQASARKLFDEMP 916
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++++I Y K +++++FD+M++ G + + +T V+ A + G +VH I
Sbjct: 954 WSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYI 1013
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
V L + +L+ MYA C I A ++F
Sbjct: 1014 LDVHLPLTVILQTSLIDMYAKCGSIGDAWSVF 1045
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
N P + AY+ LI+A K ++E+ LF+EM+ GL+P TY
Sbjct: 608 NGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATY 652
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 46 LPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
P L + +++F+++ PP YN+LIRA + + +E++ L+ ML++GL+PD++TYPF
Sbjct: 112 FPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPF 171
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
V+KA ++ + G VH+ + K G D YI ++L+ +YA K++ AK LF+
Sbjct: 172 VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFN 225
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 48 ISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ + R +F+ V + ++NT+I YA E++ LFD+M G++P T ++
Sbjct: 246 VEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLL 305
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G +H+ I + + +G L+ MYA C +I A +F+ M
Sbjct: 306 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 359
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 3 SRQIET----LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLF 57
SR ET LI S T HQ+ A +L N+ ++++ I +S + SL + S+F
Sbjct: 36 SRSPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIF 95
Query: 58 NNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
P LF +N LIR A+ S S+ F ML+ +RPD LT PFV+K+ + +G
Sbjct: 96 RCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVG 155
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +H + K+GL D ++ +L+ MY E+ F LFDE P+
Sbjct: 156 LGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQ 201
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF MP + ++ T+I +++ +++ +F ML+ G+RP++LT VV
Sbjct: 255 LDRARELFVQ-MPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLT---VVS 310
Query: 108 ASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
A C IG VG +H+ + G ++ IG L+ MYA C I A +F E
Sbjct: 311 ALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVE 365
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 3 SRQIET----LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLF 57
SR ET LI S T HQ+ A +L N+ ++++ I +S + SL + S+F
Sbjct: 36 SRSPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIF 95
Query: 58 NNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
P LF +N LIR A+ S S+ F ML+ +RPD LT PFV+K+ + +G
Sbjct: 96 RCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVG 155
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +H + K+GL D ++ +L+ MY E+ F LFDE P+
Sbjct: 156 LGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQ 201
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 41 FILTSLP--ISLHFTRSLFNNVMPPLFAYNTLIRA-----YAKTSCSIESIKLFDE---- 89
F+L S+ + + R L VM +++ +R Y K ++LFDE
Sbjct: 143 FVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQR 202
Query: 90 ------MLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTL 140
+L G+RP++LT VV A C IG VG +H+ + G ++ IG L
Sbjct: 203 NKAESILLWNGVRPNDLT---VVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTAL 259
Query: 141 LRMYAACKEIDFAKALFDE 159
+ MYA C I A +F E
Sbjct: 260 VDMYAKCGNIKSASRVFVE 278
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPI--SLHFTRSLFNNVMP-P 63
+L Q QL A LKT++ ++ ++ SR + L S P L + RS+F+ +
Sbjct: 21 SLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRS 80
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +NT+I+ Y + S + I LF E++ L PDN T P V+K + ++ G +H
Sbjct: 81 LIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHG 139
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L K+G SD ++ +L+ MY+ C EID A+ +FD M
Sbjct: 140 LALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGM 176
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N +I Y ++++K+F MLK G RP + T V+ A ++G G +HS
Sbjct: 223 LVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHS 282
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ K G D +G +L+ MYA C I+ A +F
Sbjct: 283 YMEKNGFELDGILGTSLIEMYAKCGCIESALTVF 316
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 47 PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
P L + +++F+++ PP YN+LIRA + + +E++ L+ ML++GL+PD++TYPFV
Sbjct: 142 PTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFV 201
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+KA ++ + G VH+ + K G D YI ++L+ +YA K++ AK LF+
Sbjct: 202 IKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFN 254
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N+++ YA+ E++ LFD+M G++P T ++ A + G +H+
Sbjct: 354 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 413
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + + +G L+ MYA C +I A +F+ M
Sbjct: 414 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 450
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLF 65
+L+ S H +Q+ A + + L + +++++F+ S I + + R +F+ P +F
Sbjct: 76 SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVF 135
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +IR Y+ + ++I+++ M +G+ PD T P V+KA ++ VG VH I
Sbjct: 136 LWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQI 195
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
F++G SD ++ N L+ +YA C ++ A+ +F+ + +
Sbjct: 196 FRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDD 232
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS F+ + +P + +N +I YAK + E++ LF EM+ +R D++T + A Q
Sbjct: 324 ARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQ 383
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + + I K +D ++ L+ M+A C +D A+ +FD
Sbjct: 384 VGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFD 430
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I Y + +E++++F +M + ++PD + V++A + G S+H
Sbjct: 235 IVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHG 294
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+GL + + +L MYA C ++ A++ FD+M
Sbjct: 295 CVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQM 331
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMPP-LFA 66
L Q + H + A L+ LD ++Y++++ + S + +++ +F+ P +F
Sbjct: 16 LFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFL 75
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+I ESI+++ M K GL PD+ T+PF++KA + L +G +H L+
Sbjct: 76 FNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVV 135
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G SD ++ +L+ +Y C ID A +FD++PE
Sbjct: 136 KAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPE 171
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 55 SLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
S+F+ ++ + +++++I+ YA E++ LF +ML G RPD V+ A +
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLG 261
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +L+ + + +G L+ MYA C +D A +F M
Sbjct: 262 ALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGM 308
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT----SLPISLHFTRSLFNNV- 60
I + +++ + HQ A LK+ L H+T+ SR I + S ++ + S+F+ +
Sbjct: 10 ILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP 69
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P + +NT+IRAYA + ++ +F +ML + PD T+ F +K+ + G
Sbjct: 70 NPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQ 129
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K GL D +I NTL+ +YA+C I+ A+ L D M E
Sbjct: 130 IHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLE 171
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y+ E + LF++M G++PDN T V+ A + G VH+ I
Sbjct: 208 SWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYI 267
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
K G+ D ++ L+ MY+ C I+ A +F+
Sbjct: 268 DKNGISIDGFVATALVDMYSKCGSIEKALEVFN 300
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ LF+K +D ++Y + IL S+ +L + R L P F +NTL+R Y++
Sbjct: 23 QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 82
Query: 77 TSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S+ +F EM++ G + PD+ ++ FV+KA + + G +H K GL S +
Sbjct: 83 SDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLF 142
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+G TL+ MY C ++FA+ +FDEM
Sbjct: 143 VGTTLIGMYGGCGCVEFARKVFDEM 167
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I A ES F E+ + G+ P+ ++ V+ A Q G +H +
Sbjct: 236 SWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFV 295
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + N L+ MY+ C + A+ +F+ M E
Sbjct: 296 EKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQE 332
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 66/100 (66%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
PP + +N +IR ++ + +SI ++ +ML+ GL PD++TYPF++K+S + +GGS+
Sbjct: 71 PPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSL 130
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H + K GL D +I NTL+ MY + ++ A+ LFDEMP
Sbjct: 131 HCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMP 170
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++++I Y K +++++FD+M++ G + + +T V+ A + G +VH I
Sbjct: 208 WSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYI 267
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
V L + +L+ MYA C I A ++F
Sbjct: 268 LDVHLPLTVILQTSLIDMYAKCGSIGDAWSVF 299
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ LF+K +D ++Y + IL S+ +L + R L P F +NTL+R Y++
Sbjct: 15 QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 74
Query: 77 TSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S+ +F EM++ G + PD+ ++ FV+KA + + G +H K GL S +
Sbjct: 75 SDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLF 134
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+G TL+ MY C ++FA+ +FDEM
Sbjct: 135 VGTTLIGMYGGCGCVEFARKVFDEM 159
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I A ES F E+ + G+ P+ ++ V+ A Q G +H +
Sbjct: 228 SWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFV 287
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + N L+ MY+ C + A+ +F+ M E
Sbjct: 288 EKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQE 324
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------PPLFAY 67
K+ H Q L L+ L +TY+I+ + +SL HF + + V+ P +F Y
Sbjct: 14 KSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSL----HFAATQYATVVFAQTPHPNIFLY 69
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC-LLIGVGGSVHSLIF 126
NTLIR +++ ++ M + G PDN T+PFV+KA + VG S+HSL+
Sbjct: 70 NTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G D ++ L+ +Y+ + A+ +FDE+PE
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPE 165
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 13 SKTAHHHH---QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAY 67
++ H+ H L +L +KT D + ++ + + L S L R +F+ + + ++
Sbjct: 112 TRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSW 171
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+I Y ++ C E++ LF +L+ GLRPD+ T ++ A + + G + + +
Sbjct: 172 TAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRE 231
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G + ++ +L+ MYA C ++ A+ +FD M E
Sbjct: 232 SGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVE 266
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ V + ++ LI+ YA E++ +F EM + +RPD V
Sbjct: 253 SMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFS 312
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + + +G L+ S+ +G L+ YA C + AK +F M
Sbjct: 313 ACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGM 365
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNV-MPPL 64
+L+Q SKT+ Q+ A + T+L +T+ SR + + S +++++ +F + P
Sbjct: 16 SLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNS 75
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F NT+++ Y ++S +++ + EM + GL DN TYPFV+KA + GG V
Sbjct: 76 FICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGE 135
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G D ++ N L+ MY C E +A+A+FD E
Sbjct: 136 AVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSE 173
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R +F+ ++ + +++ +I YA+ S E++ LF +ML G++PD ++ V A
Sbjct: 255 MEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + G +H + + + D + L+ MY C D A+ +F+ MPE
Sbjct: 315 CSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPE 368
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 14/155 (9%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLF---NNVMPP----LFAYNTLIR 72
Q+ +L LK L HN ++++F TS ++H+ S+ + PP F +NTLIR
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199
Query: 73 AYAKTSCSI-ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
A+A+T+ S +++ ++ M + + P+ T+PFV+KA + + +GG+VH+ + K G
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259
Query: 132 SDKYIGNTLLRMYAACKEID-----FAKALFDEMP 161
D ++ NTL+ MY C + AK +FDE P
Sbjct: 260 EDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESP 294
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I YA+ S ++ LF EM TG+ PD +T V+ A + +G + S I
Sbjct: 301 WSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIE 360
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + + N L+ M+A C ++D A +F EM
Sbjct: 361 RKNIMRSVELCNALIDMFAKCGDVDRAVKVFREM 394
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 10/104 (9%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG----LRPDNLTYPFVVKASDQCLLIGV 117
P LF YNTLIR A T+ +++ L+ M + G +RPD +T+PFV++A C +G
Sbjct: 71 PDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRA---CTAMGA 127
Query: 118 GGS---VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
GG+ VH+ + K G SD ++ N L+ M+A+C E+ A ALFD
Sbjct: 128 GGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFD 171
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LFN + + ++N +I + + + +++LF++M + G +PD +T ++ A
Sbjct: 229 RVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADS 288
Query: 113 LLIGVGGSVHSLIFKVGLHS--DKYIGNTLLRMYAACKEIDFAKALF 157
I VG +HS + ++ L + +GN L+ MYA C + A +F
Sbjct: 289 GDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVF 335
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 7/161 (4%)
Query: 7 ETLIQL---SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL----HFTRSLFNN 59
+TLI L ++ Q+ A F+ + L + SR + S S H R
Sbjct: 13 QTLIALLENCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQI 72
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P + +N++IR ++K S+ +F +ML+ G+ PD+LTYPF+ KA + + +
Sbjct: 73 PSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLAL 132
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+VH I K GL D++I N+L+ MY +C +I A+ +FDEM
Sbjct: 133 AVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEM 173
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL---HFTRSLFNNVM-PP 63
+L++ K+ Q+ A L + I+++ + S+ SL ++ +FN++ P
Sbjct: 13 SLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPS 72
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF YN +I+A+ K +I LF ++ + G+ PDN TYP+V+K + G +H+
Sbjct: 73 LFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHA 132
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL D Y+ N+L+ MYA ++ +F+EMPE
Sbjct: 133 FVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPE 171
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKT 77
++ A +KT L+ + Y+ + + L + FT+ ++N +I Y +
Sbjct: 128 EKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRC 187
Query: 78 SCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
E++ ++ M +++ +P+ T + A + +G +H I L +
Sbjct: 188 KRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANE-LDLTPIM 246
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
GN LL MY C + A+ +FD M
Sbjct: 247 GNALLDMYCKCGCVSVAREIFDAM 270
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I Y + + ++I LF EM G+ PD ++ Q + G +H+ I
Sbjct: 309 WTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYID 368
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + D + L+ MYA C I+ + +F+ + +
Sbjct: 369 ENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKD 404
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPI--SLHFTRSLFNNVMP-PLFAYNTLIRAYAK 76
QL A LKT++ ++ ++ SR + L S P L + RS+F+ + L +NT+I+ Y +
Sbjct: 31 QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE 90
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
S + I LF E++ L PDN T P V+K + ++ G +H L K+G SD ++
Sbjct: 91 NQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFV 149
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
+L+ MY+ C EID A+ +FD M
Sbjct: 150 QGSLVNMYSKCGEIDCARKVFDGM 173
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N +I Y ++++K+F MLK G RP + T V+ A ++G G +HS
Sbjct: 271 LVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHS 330
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ K G D +G +L+ MYA C I+ A +F
Sbjct: 331 YMEKNGFELDGILGTSLIEMYAKCGCIESALTVF 364
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRS------LFN 58
+ +TL+Q KT+H AL L T NT II L + HF LF
Sbjct: 13 KCKTLLQF-KTSH------ALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFR 65
Query: 59 NVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ P ++ +N++I+ YAK++ S+ L+ +ML+ G PD+ T+PFV+KA
Sbjct: 66 QIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVS 125
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VHS I K G ++ Y+ LL MY CK ++ +FD++P+
Sbjct: 126 GKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPK 170
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L+ R LFN MP + A+N +I AY + E++ LF ML G PD T+ V+
Sbjct: 266 LNVARELFNK-MPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLS 324
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++ +G +VH+ + K + D + LL MYA E+ A+ +F+ E
Sbjct: 325 VCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLE 379
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+ LI Y E++++F EM + G+ + +T + A +C + G VH
Sbjct: 173 VVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHE 232
Query: 124 LIFKVGL-------HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G +S+ + ++ MYA C ++ A+ LF++MPE
Sbjct: 233 RVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPE 278
>gi|297834252|ref|XP_002885008.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
gi|297330848|gb|EFH61267.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 3 SRQIETLI--QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS---LPISLHFTRSLF 57
SR+ + LI +L + H Q+ +SL ++++II + S L L F R+L
Sbjct: 5 SRKHQCLIFLKLCSSFKHLLQIHGKIHVSSLQNDSFIIIELVRVSSLSLVKDLTFARTLL 64
Query: 58 ---NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
++ P +N L R Y+ + +ESI + EM + G+ P+ LT+PF++KA L
Sbjct: 65 LHSSDSTPS--TWNMLNRGYSSSDTPVESIWFYSEMERRGINPNKLTFPFLLKACASFLG 122
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + K G SD Y+GN L+ +Y +CK+ A+ +FDEM +
Sbjct: 123 LTAGRQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTYDARKMFDEMTD 170
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 85.5 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPIS--LHFTRSLFNNV 60
+Q +L+ ++ Q+ A + L +T ++S + SL S L RS ++
Sbjct: 17 QQCLSLLNSCRSMDQLRQIQAQVHVSGLYQDTRVLSELVYFCSLSPSKNLRHARSFVHHA 76
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P ++N LIR YA + +E+ +F +M + G P+ LT+PF++K+ + G
Sbjct: 77 ATPSPISWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAVASALFEGK 136
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+ K GL SD Y+GN L+ Y CK+I A+ +F EMPE
Sbjct: 137 QVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPE 179
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKT 77
Q+ A +K LD + Y+ + I + R +F MP + ++N+++ A ++
Sbjct: 137 QVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGE-MPERTVVSWNSVMTACVES 195
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+ I F M G PD + ++ A + + +G VHS + G+ +G
Sbjct: 196 LWLGDGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVLSVQLG 255
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
L+ MY + +A+ +F+ M
Sbjct: 256 TALVDMYGKSGALGYARDVFERM 278
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRA 73
+H QL A + SL H+ Y ++ I T L H+T LFN+ + P +F + +++R
Sbjct: 15 NHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRF 74
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG-SVHSLIFKVGLHS 132
Y+ + + ++++M G+RPD YP ++K++ G GG H+ + K+G S
Sbjct: 75 YSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSA------GTGGIGFHAHVLKLGHGS 128
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D ++ N ++ MYA I A+ +FDE+P+
Sbjct: 129 DAFVRNAVIDMYARLGPIGHARKVFDEIPD 158
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R F+ MP + ++N ++ YA+ + E+++LFDEM+ G+ PD T+ V+
Sbjct: 210 LEAARRYFD-CMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVIS 268
Query: 108 A----SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A D CL + ++H ++ ++ LL MYA ++D A+ LF+ MP
Sbjct: 269 ACSSRGDPCLAASLVRTLHQKRIQLNC----FVRTALLDMYAKFGDLDSARKLFNTMP 322
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVV 106
L R LFN MP + +N++I YA+ S +I+LF EM+ L PD +T V+
Sbjct: 311 LDSARKLFNT-MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 369
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G V + + + N ++ MY+ C ++ AK +F EM
Sbjct: 370 SACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNTLI +A +E+I L M + G+ PD +T+ V+ A L+ G V I
Sbjct: 430 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 489
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ D Y ++ + E++ AK + MP
Sbjct: 490 KDPAI--DHYA--CMVDLLGRVGELEDAKRTMERMP 521
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Query: 31 LDHNTYIISRFIL-TSLPIS--LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKL 86
+ NT + I +S+ IS + + LF ++ P F +NT+IR A++ + +I L
Sbjct: 6 FNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISL 65
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
+ +M +RPD T+PFV+KA + + +G VH +F++G S+ ++ NTL+ +A
Sbjct: 66 YSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHAN 125
Query: 147 CKEIDFAKALFD 158
C ++ A+ALFD
Sbjct: 126 CGDLAVARALFD 137
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ V + +N +I Y + +++++F+EM G PD +T ++ A
Sbjct: 195 RKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDL 254
Query: 113 LLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I ++G +GN L+ MYA C I A +F M E
Sbjct: 255 GDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMRE 305
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI---SLHFTRSLFNNV- 60
Q +L Q QL A + L+ T ++ I S + ++ + LF +
Sbjct: 15 QQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQIS 74
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +F +NT+IR A+T ++ L+ +M G+RPD T+ FV+KA + + +G
Sbjct: 75 QPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFG 134
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+H + K G S+ ++ NTL+ +A C ++ A+ALFD
Sbjct: 135 IHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFD 172
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ V + +N +I Y + + E++++FD M G RPD++T ++ AS
Sbjct: 229 ARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASAD 288
Query: 112 CLLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H IF + + N L+ MYA C I A +F M
Sbjct: 289 LGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGM 338
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 55 SLFNNVMPPL---FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
SLFN F +NTLIRA++ + + + + ++ M++ G++ D+ T+PFV+K
Sbjct: 111 SLFNQTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCS 170
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G VH ++FK+G +D Y+GNTLL +Y C ++ A+ LFDEMPE
Sbjct: 171 DSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPE 222
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
LH R++FN +YN LI Y++T ++S+ LF EM G +PD +++ V+ A
Sbjct: 514 LHSARNVFNTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISAC 573
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VH + + L+S ++ N+LL Y C ID A LF+++
Sbjct: 574 ANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQI 624
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I YA +E+I+ +M +TG P+ +T+ V+ A + +G G +H+
Sbjct: 428 IVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHA 487
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ ++GL SD ++ N+L+ MYA C + A+ +F+
Sbjct: 488 MGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN 522
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I A +++ F M+ G +P+++T ++ + G +H
Sbjct: 329 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 388
Query: 126 FKVGLHSDKYIGNTLLRMYA 145
++G +D +I N+L+ MYA
Sbjct: 389 MRMGTETDIFIANSLIDMYA 408
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPI-SLHFTRSLFNN-VM 61
+ L QLS + Q L K+ L ++ ++IS+ I L+ P+ SL + +++F + M
Sbjct: 116 LSKLQQLS-SVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAM 174
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG--- 118
F NT+IRAYAK+ I++I L++ M + ++ D+ TYPF +KA + L G
Sbjct: 175 DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIK 234
Query: 119 ----------GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H +F++GL D +I N+L+ +Y+ C +D A+ +FDEM E
Sbjct: 235 CTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTE 288
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + ++ LF EM + ++T V+ A + + +G +H +
Sbjct: 355 SWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSL 414
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + Y+ N L+ MYA C ++ A +F E+
Sbjct: 415 KQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSEL 449
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +NTLIR Y+ ++++++M++ G+RPD+ T+PFV+KA + G VH
Sbjct: 8 FLWNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGX 66
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G SD ++GNTLL Y C + A +FDEMPE
Sbjct: 67 VVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPE 104
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 55/111 (49%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L R++F+ + +YN LI ++TS ES+ LF EM GL+ DN+++ + A
Sbjct: 396 LKLARNVFDTSLRDEVSYNILIVGXSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSAC 455
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G +H + + H ++ N+LL Y C I A+ +FD M
Sbjct: 456 ANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRM 506
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLT----YPFVVKASDQCLLIGVG 118
L ++NT+I ++ C E + LF EM L++GLRP+ ++ P D+
Sbjct: 107 LVSWNTMIGVFSVNGCWXEVLDLFGEMRLRSGLRPNVVSVVSVLPVCAGVEDEV----TA 162
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + KVGL +GN LL +Y C + K +F EM E
Sbjct: 163 SEIHGYVVKVGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMVE 206
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I ++ +++ +F M+ GL+P+++T + + G VH
Sbjct: 209 LVSWNAIITSFGYKGHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHG 268
Query: 124 LIFKVGLHSDKYIGNTLLRMYA 145
++GL SD +I N+L+ MYA
Sbjct: 269 SSIRMGLESDIFIANSLIDMYA 290
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 47/93 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I +A+ + ++ L +M G P+++T+ V+ A + L+ G +H+
Sbjct: 312 SWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARS 371
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+G D ++ N L MYA + A+ +FD
Sbjct: 372 IHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD 404
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISL----HFTRSLFNNVMPPLFAYNTLIRAYAK 76
Q+ A F+ + L + SR + S S H R P + +N++IR ++K
Sbjct: 23 QIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSK 82
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
S+ +F +ML+ G+ PD+LTYPFV KA + + + +VH I K GL D++I
Sbjct: 83 GKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFI 142
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
N+L+ MY +C +I A+ +FDEM
Sbjct: 143 ANSLIHMYGSCGDIGSARKVFDEM 166
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 5/160 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFN-NVMPP 63
+L+++ K QL A K N ++R + S ++++ +S+FN + P
Sbjct: 30 SLLEICKFTTEFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPN 89
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIGVGGSVH 122
FAYN +IR YA+ ++ LF ML N LT+PFV+KA Q I G VH
Sbjct: 90 TFAYNVMIRGYAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVH 149
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+FK GL D ++ N+L+ MY++C I FA +F+++ +
Sbjct: 150 GLVFKHGLSEDLFVQNSLISMYSSCGLIGFACQVFNKIDD 189
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N LI Y K +E+ +LFD+M T V+ A + G + +
Sbjct: 223 LVTWNCLIDGYVKAGLLMEARELFDQM--------RFTMVSVLTACSYLGALEQGEWMQA 274
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G+ + +G L+ M+A C I+ A ++F + E
Sbjct: 275 HIEKNGIDVNSVLGTALVEMFAKCGSIERALSVFKSIEE 313
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 10/161 (6%)
Query: 9 LIQLSKTAHHHHQLPALFLKTS--LDHNTYIISRFILTS----LPISLHFTRSLFNNV-M 61
++Q KT Q+ A LKT LD II+ +L S LP ++ + S+FN++
Sbjct: 27 ILQQCKTPKDLQQVHAHLLKTRRLLDP---IITEAVLESAALLLPDTIDYALSIFNHIDK 83
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P AYN +IR A ++ LF +M + ++ D T+ V+KA + + G V
Sbjct: 84 PESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQV 143
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+LI K G S++++ NTL++MYA C +I A+ +FD MPE
Sbjct: 144 HALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPE 184
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTL 70
K Q+ AL LK+ N ++ + I + + + R +F+ MP + A+N++
Sbjct: 135 KALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDG-MPERSIVAWNSM 193
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
+ Y K E +KLF ++L+ + D++T V+ A + + +G + I GL
Sbjct: 194 LSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGL 253
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +L+ MYA C ++D A+ LFDEM
Sbjct: 254 RRNNTLTTSLIDMYAKCGQVDTARKLFDEM 283
>gi|218189272|gb|EEC71699.1| hypothetical protein OsI_04200 [Oryza sativa Indica Group]
Length = 338
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L F +F+ + P F +N LIR A++ ++I + + G+ PDNLT+PF++KA
Sbjct: 15 LVFAHKVFDQIKAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKA 74
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + G +H+ I K+GL SD ++ N+L+ +YAAC + +A+++FDEM
Sbjct: 75 CARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEM 126
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L + RS+F+ V+ + ++N+LI Y++ + + + LF M G++ D +T VV
Sbjct: 115 NLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVS 174
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + + + I + D Y+GNTL+ + ++ A+ +F M
Sbjct: 175 ACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM 227
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSL--DHNTYIISRFILTSLPISLHFTRSLFNNVMPP 63
+ETL +L K+ H +Q+ A ++ L D N I +S SL ++ S+F V P
Sbjct: 13 LETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSP 72
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSV 121
+ +N LI+ Y+ E++ + M++TGL RPD T+P V+K + VG SV
Sbjct: 73 GTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSV 132
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H L+ ++G D +G + + Y CK++ A+ +F EMPE
Sbjct: 133 HGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPE 173
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A++ LI YA+ E+ K+F EM ++PD ++ A Q + V S +
Sbjct: 271 AWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYL 330
Query: 126 F-KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ S Y+ L+ M A C +D A LF+EMP+
Sbjct: 331 HQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQ 368
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L +Y +++ A C E+I+LF++M+ G+ PD + + ++K Q L+ G
Sbjct: 371 LVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEG 425
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 85/155 (54%), Gaps = 4/155 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-MPP 63
+L + K+ +H Q+ + +KT + N I ++ F + + + R LF+ + P
Sbjct: 19 SLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPS 78
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F++N + + Y++ +C + L+ EML+ ++PD TYPF+ K + + + +G +H
Sbjct: 79 VFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHC 138
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ K GL S+ + N L+ MY+ C ID A+ +FD
Sbjct: 139 HVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFD 173
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLK 92
T I++ F+ T + R F+ MP ++ +I Y + +C E++ LF EM
Sbjct: 201 TAIVTGFVNTG---QVDAARKYFHK-MPERDHVSWTAMIDGYLRLNCYKEALMLFREMQT 256
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
+ ++PD T V+ A Q + +G + + I K + +D ++GN L+ MY C ++
Sbjct: 257 SKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEM 316
Query: 153 AKALFDEMPE 162
A ++F+ +P+
Sbjct: 317 ALSIFNTLPQ 326
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 21 QLPAL----FLKTSLDHNTYIISRFILTSLPISLHF-------TRSLFNNV-MPPLFAYN 68
QL AL +++T +D N F+ +L I ++F S+FN + F +
Sbjct: 275 QLGALELGEWIRTYIDKNKVKNDTFVGNAL-IDMYFKCGNVEMALSIFNTLPQRDKFTWT 333
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
++ A C E++ +F +MLK + PD +TY V+ A ++ G
Sbjct: 334 AMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEG 383
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS--LPISLHFTRSLFNNVMPP 63
I TL++ K H Q+ A + L+ + +++ FI + L +L + S+F+ V+ P
Sbjct: 32 ITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAP 91
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+NTLI+++ + + ++ F M G PD+ TYP V+KA G S+H
Sbjct: 92 STVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLH 151
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
F+ G+ D Y+G +L+ MY C EI A+ +FD M +
Sbjct: 152 GSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSD 191
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 53 TRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ ++ + A++ LI Y + +++++F EM ++PD ++ AS Q
Sbjct: 275 ARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQ 334
Query: 112 CLLIGVGGSVHSLIFKV--GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + V S + K+ L D I LL M A C ++ A LFDE P
Sbjct: 335 LGHLELAQWVDSYVSKICIDLQQDHVIA-ALLDMNAKCGNMERALKLFDEKPR 386
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 84/143 (58%), Gaps = 3/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
+L A + + L + Y +S+ I + +L S L F +F + P F +NTL+R A++
Sbjct: 329 KLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQS 388
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
++I + + + G++PDN+T+PFV+KA + G +HS + K+G D ++
Sbjct: 389 DAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVS 448
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
N+L+ +YAAC ++ A+++FDEM
Sbjct: 449 NSLIHLYAACGDLVCARSIFDEM 471
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ + R LF+ MP + ++ LI Y + E++ LF M+ G+ P +T VV
Sbjct: 22 IEYARLLFDQ-MPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVP 80
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A I +G +H K G+ SD +GN+L+ +YA + + +FDEM
Sbjct: 81 AISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEM 133
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 55/99 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +++++I AY++ S +S++LF +M + ++PD + V+ A + +G +H
Sbjct: 608 LISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHD 667
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +D + N+L+ M+A C + A +F EM E
Sbjct: 668 YVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEE 706
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L ++ ++I +A S+E+++LF EM + G+RP+ +T+ V+ A L+ G
Sbjct: 139 LVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQG 193
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
RS+F+ ++ + ++N+LI Y++ + E + LF+ M ++ D +T +VK C
Sbjct: 465 RSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVT---MVKVISAC 521
Query: 113 LLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G + + I + + D Y+GNTL+ Y ++ A+ +F +M +
Sbjct: 522 THLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKD 574
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +NTLIR Y+ ++++++M++ G+RPD+ T+PFV+KA + G VH
Sbjct: 8 FLWNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGS 66
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G SD ++GNTLL Y C + A +FDEMPE
Sbjct: 67 VVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPE 104
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L R++F+ + +YN LI +++TS ES+ LF EM GL+ DN+++ + A
Sbjct: 295 LKLARNVFDTSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSAC 354
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G +H + + H ++ N+LL Y C I A+ +FD M
Sbjct: 355 ANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRM 405
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 47/93 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I +A+ + ++ L +M G P+++T+ V+ A + L+ G +H+
Sbjct: 211 SWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARS 270
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+G D ++ N L MYA + A+ +FD
Sbjct: 271 IHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD 303
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 64 LFAYNTLIRAYAKTSCSI-ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
L ++NT+I ++ +++ +F M+ GL+P+++T + + G VH
Sbjct: 107 LVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVH 166
Query: 123 SLIFKVGLHSDKYIGNTLLRMYA 145
++GL SD +I N+L+ MYA
Sbjct: 167 GSSIRMGLESDIFIANSLIDMYA 189
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS---LHFTRSLFNNV- 60
QI + I ++ ++ A L+T L + + S+ S S L + R+LF+ +
Sbjct: 27 QILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIP 86
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P L+ +NTLIRAYA +S +S +F ++L K P+ T+PFV+KA+ + VG
Sbjct: 87 QPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGT 146
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+VH + K+ D YI N+L+R Y AC ++ A+ LF
Sbjct: 147 AVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLF 184
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSI 81
+ +K S + YI++ + L LF + + ++N++I A+A+ +C
Sbjct: 150 GMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPE 209
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
++++LF +M + + P+++T V+ A + L + G V S I + G+ D + N +L
Sbjct: 210 DALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAML 269
Query: 142 RMYAACKEIDFAKALFDEMPE 162
MY C +D A+ LFDEMPE
Sbjct: 270 DMYTKCGSVDDAQKLFDEMPE 290
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 59 NVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLI 115
N MP + A+N LI AY + E++ +F+E+ L +PD +T + A Q I
Sbjct: 317 NAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAI 376
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+GG +H I + G+ + ++ ++L+ MYA C ++ A +F + E
Sbjct: 377 DLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE 423
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 17 HHHH-----QLPALFLKTSLDHNTYIISRFILTSLPI---SLHFTRSLFNNV-MPPLFAY 67
H++H Q+ A LK + +T+ +S + T S+ + S+F + P F Y
Sbjct: 7 HNNHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDY 66
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHSL 124
NT+IR E++ L+ +M++ G+ PD TYPFV+KA C L+GV G VH
Sbjct: 67 NTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKA---CSLLGVVDEGIQVHGH 123
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+FK+GL D + N+L+ MY C EI A +F+ M E
Sbjct: 124 VFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDE 161
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 10/149 (6%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAY 74
H QL A + SL H+ Y ++ I T L H+T LFN+ + P +F + +++R Y
Sbjct: 16 HLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG-SVHSLIFKVGLHSD 133
+ + + +F+ M G+RPD YP ++K++ G GG H+ + K+G SD
Sbjct: 76 SHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSA------GNGGIGFHAHVLKLGHGSD 129
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ N ++ MYA I A+ +FDE+P+
Sbjct: 130 AFVRNAVIDMYARLGPIGHARKVFDEIPD 158
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R F+ MP + ++N ++ YA+ + E ++LFDEM+ G+ PD T+ V+
Sbjct: 210 LEAARRYFD-CMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVIS 268
Query: 108 A----SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A D CL + ++H + + + ++ LL MYA C I A+ +FDE+
Sbjct: 269 ACSSRGDPCLAASLVRTLH----QKQIQLNCFVRTALLDMYAKCGSIGAARRIFDEL 321
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFV 105
+L R LFN MP + +N++I YA+ S +I+LF EM+ L PD +T V
Sbjct: 342 NLDSARELFNT-MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 400
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ A + +G V + + + N ++ MY+ C ++ AK +F EM
Sbjct: 401 ISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 455
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNTLI +A +E+I L M + G+ PD +T+ V+ A L+ G V I
Sbjct: 462 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 521
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ D Y ++ + E++ AK + MP
Sbjct: 522 KDPAI--DHYA--CMVDLLGRVGELEDAKRTMERMP 553
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 21 QLPALFLKTSLDH--NTYII-SRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
QL A ++T+ H NT+ + SR + S L + +F+ + P F +N LIRA A+
Sbjct: 44 QLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACAR 103
Query: 77 TSCSIE-SIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
++ + +I L+ ML+ G + D T+PFV+KA + G +H+ I K+G SD
Sbjct: 104 STDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDV 163
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
YI N+L+ YA C +DFAK +FD M E
Sbjct: 164 YINNSLVHFYATCDRLDFAKGVFDRMSE 191
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
Q+ A LK D + YI + + + L F + +F+ + L ++N +I A+ +
Sbjct: 149 QIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFG 208
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI---FKVGLHSDKY 135
++ LF EM K PD T + A + +G H + F +D
Sbjct: 209 EFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVL 267
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +L+ MY C ++ A LF MP+
Sbjct: 268 LNTSLVDMYCKCGSLELALQLFHRMPK 294
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 21 QLPALFLKTSLDH--NTYII-SRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
QL A ++T+ H NT+ + SR + S L + +F+ + P F +N LIRA A+
Sbjct: 44 QLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACAR 103
Query: 77 TSCSIE-SIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
++ + +I L+ ML+ G + D T+PFV+KA + G +H+ I K+G SD
Sbjct: 104 STDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDV 163
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
YI N+L+ YA C +DFAK +FD M E
Sbjct: 164 YINNSLVHFYATCDRLDFAKGVFDRMSE 191
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
Q+ A LK D + YI + + + L F + +F+ + L ++N +I A+ +
Sbjct: 149 QIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFG 208
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ LF EM K PD T + A G+G +G+ +D +
Sbjct: 209 EFDAALNLFGEMQKF-FEPDGYTIQSIANAC-----AGMGS------LSLGIVNDVLLNT 256
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ MY C ++ A LF MP+
Sbjct: 257 SLVDMYCKCGSLELALQLFHRMPK 280
>gi|224098349|ref|XP_002311155.1| predicted protein [Populus trichocarpa]
gi|222850975|gb|EEE88522.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 32 DH--NTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFD 88
DH N ++I ++L + ++ R LF+++ P + YN++IRAY++T E+I ++
Sbjct: 64 DHLTNAHLIKSYLLF---LKCNYARFLFDSLPNPSVMLYNSIIRAYSRTKNHQEAINIYH 120
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
ML GL PD T+ FV+KA L G VH I GL D +IG +L+ MY
Sbjct: 121 CMLNKGLEPDKYTFTFVLKACTGALYFKEGILVHKDIIVRGLERDAFIGTSLVDMYCKMG 180
Query: 149 EIDFAKALFDEMPE 162
++ A+ +FD+MPE
Sbjct: 181 DLKLARKVFDKMPE 194
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYA 75
+QL A ++ D N ++I + F S +++ +F+ + F +NT+IR +
Sbjct: 72 NQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFLWNTMIRGFG 131
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ + + + + ML+ G+ DN T+ F++K + Q I +G +H I K+GL S Y
Sbjct: 132 RNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLDSHVY 191
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ NTL+ MY K+++ A+ LFDE+P+
Sbjct: 192 VRNTLIHMYGRLKDVNIARNLFDELPK 218
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
QL LK LD + Y+ + I + ++ R+LF+ + L A+N +I +
Sbjct: 176 QLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCG 235
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ LF +ML++G+ PD T + A + G VHS + + N
Sbjct: 236 MYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFN 295
Query: 139 TLLRMYAACKEIDFAKALFD 158
+L+ MYA C +++A+ +F+
Sbjct: 296 SLIDMYAKCGAVEYAREMFN 315
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 29 TSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLF 87
T+ D Y+I F L S + + +F+ + P +F +NT+IR YA++ + +++L+
Sbjct: 71 TNPDMGKYLI--FTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELY 128
Query: 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+M + + PD TYPF++KA + + + G VHS+ + G S ++ NTL+ MYAAC
Sbjct: 129 RQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC 188
Query: 148 KEIDFAKALFDEMPE 162
+ A LF+ M E
Sbjct: 189 GHAESAHKLFELMAE 203
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N++I YA E++ LF EM G+ PD T ++ A + + +G H
Sbjct: 206 LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 265
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ KVGL + + GN LL +YA C I A +FDEM E
Sbjct: 266 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEE 304
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 19 HHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
H +L L + +LD T +++ + S+ SL LF+ + LF +N LIRAYA
Sbjct: 81 HARLCQLGIAYNLDLATKLVNFY---SVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWN 137
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+I L+ +ML+ GL+PDN T PFV+KA IG G +H + + G D ++G
Sbjct: 138 GPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVG 197
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
L+ MYA C + A+ +FD++
Sbjct: 198 AALVDMYAKCGCVVDARHVFDKI 220
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ AYA+ ES+ L EM G+RP T V+ +S + G +H +
Sbjct: 228 WNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGW 287
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + L+ MYA C + A LF+ + E
Sbjct: 288 RHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLRE 323
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I YA ++E++ LF+ M+K +PD++T+ + A + L+ G ++++
Sbjct: 326 VVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYN 384
Query: 124 LIFKVGLHSDKYIGNT------LLRMYAACKEIDFAKALFDEM 160
L+ + D I T ++ + C ++D A L +M
Sbjct: 385 LMVR-----DCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQM 422
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P LF +NT+IR Y+ + I +I L+ +M G+ P++ T+ FV+ A + L + G +
Sbjct: 30 PNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCEGQEL 89
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HS I K GL + + N L+++YAAC +D+A +FDEMPE
Sbjct: 90 HSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPE 130
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA-YNTLIRAYAKTS 78
+L + +K LD T +++ I L + + + +F+ + P A ++T++ Y++
Sbjct: 88 ELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNG 147
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++E++KL EM + D T VV ++ +G VHS I K G+ D +G
Sbjct: 148 QAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGT 207
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
L+ MY+ C +D A +F M E
Sbjct: 208 ALVGMYSKCGSLDNALKVFQGMAE 231
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAYNT 69
K+ Q+ + + L+ + I++ F S +L + +FN V P LF YN
Sbjct: 154 KSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNV 213
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+++ YAK + + LF ++ + GL PD TYPFV+KA + G V I K G
Sbjct: 214 MVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 273
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ D Y+ N+L+ MY ++ AK LFDEM
Sbjct: 274 MDLDNYVYNSLIDMYYELSNVENAKKLFDEM 304
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLI 71
+ ++ +KT +D + Y+ + I +S + + LF+ + ++N +I
Sbjct: 257 RDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 316
Query: 72 RAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
Y + ++I F EM + G +PD T + A + +G +H+ + K L
Sbjct: 317 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE-L 375
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I N LL MYA C ++ A+ +FDEM
Sbjct: 376 GFTTRIDNALLDMYAKCGCLNIARNIFDEM 405
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93
T +IS +I L R LF+ + + + +I Y + +++ LF EM
Sbjct: 414 TSMISGYINCG---DLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ 470
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
++PD T ++ Q + G +H + + + D +G L+ MY+ C +D +
Sbjct: 471 RVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKS 530
Query: 154 KALFDEMPE 162
+F E+ +
Sbjct: 531 LEIFYELED 539
>gi|357447289|ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 801
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIR 72
KT HQ +KTSL + + +S+ + S+ +++ ++F + P LF YNT++R
Sbjct: 24 KTITEIHQFHCYMIKTSLTNVPFTLSKLLAASI-FDMNYASTIFTCIQNPNLFMYNTMLR 82
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
Y+ ++ S +++ +F+++ +G D ++ V+KA + +G G VH ++ K G
Sbjct: 83 GYSVSNSSNKALPIFNKLRNSGNGLDPFSFIAVMKACGRSFEVGFGRGVHGIVVKSGNRF 142
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ NT+L+ Y C ID A+ +FDE PE
Sbjct: 143 FVDLNNTILQFYCVCGRIDDARKVFDECPE 172
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
++ R +F+ V+ + +N LI+ YA++ E++ L M + G++P++ T ++
Sbjct: 262 IYLARKVFDGVVEKDVVLWNCLIKNYARSCLVEEAVALLQSMRQEGVKPNSSTLVGLLSV 321
Query: 109 -SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
S + GV V SLI + L D +G L+ +YA C +D A +F+ M
Sbjct: 322 YSASGSMQGVR-YVTSLIEEEKLELDVILGTALVDVYAKCGFLDEAMEIFERM 373
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNN---VMPPLFA 66
+Q KT QL LK + + +I+ + SL++ + F L+
Sbjct: 29 LQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYT 88
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
NTLIR YA + E+I ++ M+ G+ PDN T+PF++ A + + G VH ++
Sbjct: 89 CNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVV 148
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+GL D ++ N+L+ YAAC ++D + +FDEM E
Sbjct: 149 VKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLE 185
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L YNT++ Y + + E + + DEML+ G RPD +T + A Q + VG S H+
Sbjct: 289 LVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHA 348
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+F+ GL I N ++ MY C + + A +FD M
Sbjct: 349 YVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSM 385
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ ++ + ++ +LI Y+ + + E++ LF EM++ G+ P+ +T + A +
Sbjct: 177 RKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKL 236
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G V +L+ ++G+ S+ + N LL MY C ++ + +FDE +
Sbjct: 237 KDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSD 286
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 21 QLPALFLKTSLDH--NTYII-SRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
QL A ++T+ H NT+ + SR + S L + +F+ + P F +N LIRA A+
Sbjct: 44 QLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACAR 103
Query: 77 TSCSIE-SIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
++ + +I L+ ML+ G + D T+PFV+KA + G +H+ I K+G SB
Sbjct: 104 STDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSBV 163
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
YI N+L+ YA C +DFAK +FD M E
Sbjct: 164 YINNSLVHFYATCDRLDFAKGVFDRMSE 191
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
Q+ A LK D B YI + + + L F + +F+ + L ++N +I A+ +
Sbjct: 149 QIHAQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFG 208
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK---VGLHSDKY 135
++ LF EM K PD T + A + +G H + K +D
Sbjct: 209 EFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVNDVL 267
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +L+ MY C ++ A LF MP+
Sbjct: 268 LNTSLVDMYCKCGSLELALQLFHRMPK 294
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAYNT 69
K+ Q+ + + L+ + I++ F S +L + +FN V P LF YN
Sbjct: 108 KSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNV 167
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+++ YAK + + LF ++ + GL PD TYPFV+KA + G V I K G
Sbjct: 168 MVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 227
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ D Y+ N+L+ MY ++ AK LFDEM
Sbjct: 228 MDLDNYVYNSLIDMYYELSNVENAKKLFDEM 258
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLI 71
+ ++ +KT +D + Y+ + I +S + + LF+ + ++N +I
Sbjct: 211 RDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 270
Query: 72 RAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
Y + ++I F EM + G +PD T + A + +G +H+ + K L
Sbjct: 271 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE-L 329
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I N LL MYA C ++ A+ +FDEM
Sbjct: 330 GFTTRIDNALLDMYAKCGCLNIARNIFDEM 359
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93
T +IS +I L R LF+ + + + +I Y + +++ LF EM
Sbjct: 368 TSMISGYINCG---DLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ 424
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
++PD T ++ Q + G +H + + + D +G L+ MY+ C +D +
Sbjct: 425 KIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKS 484
Query: 154 KALFDEMPE 162
+F E+ +
Sbjct: 485 LEIFYELED 493
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q A LK L +++ S + T S S+ + S+F + P F +NT++R + K
Sbjct: 6 QSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVK 65
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ E++ + EM + G++PDN TYP ++KA + + G VH+ I K+GL +D ++
Sbjct: 66 DMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFV 125
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY C EI A+F++M E
Sbjct: 126 QNSLISMYGKCGEIGVCCAVFEQMNE 151
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+Y+ +I A E +++F EML+ GL PD++ Y V+ A L+ G
Sbjct: 257 LSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG 310
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS--------LHFTRSLFNNVMPP-LFAYNTLIRAY 74
L+T L + ++ SR + + S L + +F+ + P LF +N LIR +
Sbjct: 33 GFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCF 92
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + ++ + +MLK+ + PDN+T+PF++KAS + + VG HS I + G +D
Sbjct: 93 STGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDV 152
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
Y+ N+L+ MYA C I A +F +M
Sbjct: 153 YVENSLVHMYANCGFIAAAGRIFGQM 178
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP LF ++ +I YAK +C ++I LF+ M + G+ + V+ +
Sbjct: 202 AREMFDE-MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCA 260
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + K + + +G L+ M+ C +I+ A +F+ +PE
Sbjct: 261 HLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAK 76
Q A LK+ L ++ +++SR F S SL LF ++ P + +NT+I+A
Sbjct: 23 QAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLL 82
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ +I +F + + G+ PD T P+V+KAS + I +G S+H+ K+G ++++
Sbjct: 83 RGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFV 142
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GN+LL MY + + A+ +FDEMPE
Sbjct: 143 GNSLLVMYRSFDNMRSARQVFDEMPE 168
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I Y + +C E + +F M T + PD ++ A + G +H +
Sbjct: 205 WGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLG 264
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GL + L+ MYA C +D AK LF+EM +
Sbjct: 265 RLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQ 300
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L + LFN + +N +I A +IKLF EM K G++PDN+T+ V A
Sbjct: 288 LDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVWXA 347
Query: 109 SDQCLLIGVG 118
++ G
Sbjct: 348 CSNSGMVDEG 357
>gi|91806812|gb|ABE66133.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 230
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS--------LHFTRSLFNNVMPP-LFAYNTLIRAY 74
L+T L + ++ SR + + S L + +F+ + P LF +N LIR +
Sbjct: 33 GFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCF 92
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + ++ + +MLK+ + PDN+T+PF++KAS + + VG HS I + G +D
Sbjct: 93 STGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDV 152
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
Y+ N+L+ MYA C I A +F +M
Sbjct: 153 YVENSLVHMYANCGFIAAAGRIFGQM 178
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPI--SLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
Q+ A +KT L ++ I+++ I T P S+ + LF + P + +N++ R Y+
Sbjct: 44 QIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYS 103
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+++ +++I LF + L L PD+ T+P ++KA G +H L K+GL+ + Y
Sbjct: 104 RSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPY 163
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ TL+ MYA C ++D A+ +FDE+ E
Sbjct: 164 VCPTLINMYAGCNDVDGAQRVFDEILE 190
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNT 69
++K QL L +K L+ N Y+ I + + + + +F+ ++ P + +YN
Sbjct: 139 VAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNA 198
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIF 126
+I YA++S E++ LF ++ L+P+++T V+ C L+G +G +H +
Sbjct: 199 IITGYARSSRPNEALSLFRQLQARKLKPNDVT---VLSVLSSCALLGALDLGKWIHEYVK 255
Query: 127 KVGLHSDKY--IGNTLLRMYAACKEIDFAKALFDEM 160
K GL DKY + L+ MYA C +D A ++F+ M
Sbjct: 256 KNGL--DKYVKVNTALIDMYAKCGSLDGAISVFESM 289
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAK 76
Q A LK+ L ++ +++SR F S SL LF ++ P + +NT+I+A
Sbjct: 23 QAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLL 82
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ +I +F + + G+ PD T P+V+KAS + I +G S+H+ K+G ++++
Sbjct: 83 RGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFV 142
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GN+LL MY + + A+ +FDEMPE
Sbjct: 143 GNSLLVMYRSFDNMRSARQVFDEMPE 168
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I Y + +C E + +F M T + PD ++ A + G +H +
Sbjct: 205 WGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLG 264
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GL + L+ MYA C +D AK LF+EM +
Sbjct: 265 RLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQ 300
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L + LFN + +N +I A +IKLF EM K G++PDN+T+ V+ A
Sbjct: 288 LDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAA 347
Query: 109 SDQCLLIGVG 118
++ G
Sbjct: 348 CSNSGMVDEG 357
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT---------SLPISLHFTRSLFNNV-MPPLFAYNTL 70
Q+ AL + ++N + +LT + P ++ LF + P F YN +
Sbjct: 20 QIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTFMYNVM 79
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
IR +++ + +I L+ EM + ++ D+ T+PFV+KA + + G +VH ++ ++G
Sbjct: 80 IRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGF 139
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDE 159
S+ + NTLL +A C +++ A +LFD+
Sbjct: 140 GSNAVVRNTLLVFHAKCGDLNVATSLFDD 168
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ + + ++N +I Y S ++++LF+EM + G+ PD +T ++ A
Sbjct: 225 RMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADL 284
Query: 113 LLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEI 150
+ G VH+ + ++ + +GN L+ MYA C I
Sbjct: 285 GDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNI 323
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIES-IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +++N +IR T E+ + L+ M +GL+PD TY FV A + IGVG S
Sbjct: 94 PNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRS 153
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS +FKVGL D +I ++L+ MYA C ++ +A+ LFDE+ E
Sbjct: 154 VHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITE 195
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +FN ++ A+ +I Y++ S E+ KLF EM KTG+ PD T V+ A
Sbjct: 284 LDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSA 343
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G + + ++ L + Y+ L+ MY C ++ A +F+ MP
Sbjct: 344 CGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMP 396
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 27 LKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
K L+ + +I I+ + + R LF+ + ++N++I Y++ + +++
Sbjct: 159 FKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAM 218
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF--KVGLHSDKYIGNTLLR 142
LF +M + G PD T ++ A + G + + K+GL + ++G+ L+
Sbjct: 219 DLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLST--FLGSKLIS 276
Query: 143 MYAACKEIDFAKALFDEM 160
MY C ++D A+ +F++M
Sbjct: 277 MYGKCGDLDSARRVFNQM 294
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 8/150 (5%)
Query: 21 QLPALFLKTSL-DHNT--YIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ AL L+++L +H+T ++ SR + S L++ +F+ V P F +N LIRA A+
Sbjct: 40 QIHALSLRSTLPNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQ 99
Query: 77 TSC---SIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
+ E+I L++ ML ++ PDN T+PFV+KA + G H+ + K+G S
Sbjct: 100 SQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQS 159
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D YI N+L+ YA+C ++ AK +FD+MP+
Sbjct: 160 DVYINNSLIHFYASCGSLESAKNVFDKMPQ 189
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS-LPISLHFTRSLFNNVMPP-LF 65
+LI SKT HQ+ A + +L ++ I ++ I +S L S++ + ++FN+ P LF
Sbjct: 86 SLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLF 145
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N LIR S +I F ML++G++PD LTYPFV+K+ +G ++H +I
Sbjct: 146 TFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMI 205
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ D ++ +L+ MY +++ A +FDE PE
Sbjct: 206 LRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPE 242
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGS 120
+ ++ T++ +++ S +++ +F +ML+ G+RP+ T +V A C IG G
Sbjct: 312 VVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFT---IVSALSACAKIGGLEAGLR 368
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H I GLH + +G L+ MYA C I+ A +F E +
Sbjct: 369 IHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQ 410
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIES-IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +++N +IR T E+ + L+ M +GL+PD TY FV A + IGVG S
Sbjct: 90 PNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRS 149
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS +FKVGL D +I ++L+ MYA C ++ +A+ LFDE+ E
Sbjct: 150 VHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITE 191
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +FN ++ A+ +I Y++ S E+ KLF EM KTG+ PD T V+ A
Sbjct: 280 LDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSA 339
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G + + ++ L + Y+ L+ MY C ++ A +F+ MP
Sbjct: 340 CGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMP 392
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 27 LKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
K L+ + +I I+ + + R LF+ + ++N++I Y++ + +++
Sbjct: 155 FKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAM 214
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF--KVGLHSDKYIGNTLLR 142
LF +M + G PD T ++ A + G + + K+GL + ++G+ L+
Sbjct: 215 DLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLST--FLGSKLIS 272
Query: 143 MYAACKEIDFAKALFDEM 160
MY C ++D A+ +F++M
Sbjct: 273 MYGKCGDLDSARRVFNQM 290
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV--MPPLFAYNTLIRAYAKT 77
Q+ A + L NT ++ I + + +L F R +F+ +PP +N +I+AY+KT
Sbjct: 73 QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKT 132
Query: 78 SCSIESIKLFDEMLKTGLRP---DNLTYPFVVKA-SDQCLLIGVGGSVHSLIFKVGLHSD 133
S ES+ LF +ML G RP D T+ FV A S L G G +VH ++ K G SD
Sbjct: 133 PSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESD 191
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GN+L+ MY+ + AK +FDEMP+
Sbjct: 192 IFVGNSLVNMYSIFSRMVDAKRVFDEMPQ 220
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL------PISLHFTRSLFNNVMP-PL 64
LS AH ++ +D N ++S I T+L + R +F+ + L
Sbjct: 267 LSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDL 326
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+ ++I + E + F EML G +PD++T V+ L+ VH +
Sbjct: 327 LTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEE-IVHGM 385
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G S+ Y+GN+++ M + ++ A+ +F++M E
Sbjct: 386 VVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSE 423
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAK-TSCS 80
+ +K+ + N Y+ + I + S+ + R +FN + +F++ +L+ YAK
Sbjct: 384 GMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMD 443
Query: 81 IESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S+ F ML + P+ V+ A + G +H I K+G+ I
Sbjct: 444 RASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTA 503
Query: 140 LLRMYAACKEIDFAKALFD 158
L+ MYA C ID A +F+
Sbjct: 504 LIDMYAKCGRIDCASRVFN 522
>gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 404
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Query: 5 QIET----LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN 59
QIET LI SKTA HQ+ L +L +++I ++ I +SL S+ ++ S+FN+
Sbjct: 33 QIETHIIPLIHSSKTALQLHQIHTQILLHNLSSSSHITAQLISSSSLRKSIAYSLSIFNS 92
Query: 60 VMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
P L+ +N LIR ++SI F +L++ ++PD+LT+ FV+K+ L G+
Sbjct: 93 YHPKNLYLFNALIRGLTDNYRYLDSIDHFILLLRSDIKPDHLTFSFVLKSIASLSLKGLA 152
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++H +I + GL D ++ +++ +Y +E+ A +FDE P+
Sbjct: 153 RALHGMILRCGLEFDSFVRISMVDVYVKLEEVKLALKVFDESPQ 196
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 27 LKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIK 85
L+ + N+ I F + L ++ HF R +V+ ++ T++ +++ +++
Sbjct: 231 LRNTASWNSLINGFFKIGDLEQAIEHFDRMPVKDVV----SWTTMVNGFSQNGDHEKALS 286
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHSLIFKVGLHSDKYIGNTLLR 142
+F ML ++P++ T +V A C IG G +H + G ++ +GN L+
Sbjct: 287 VFSRMLDEDVKPNDFT---IVSALSACAKIGALEAGLRIHKYLKDNGFRLNRAVGNALVD 343
Query: 143 MYAACKEIDFAKALFDEMPE 162
M+A C I+ A +F E E
Sbjct: 344 MHAKCGNINSASQVFKEAKE 363
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV--MPPLFAYNTLIRAYAKT 77
Q+ A + L NT ++ I + + +L F R +F+ +PP +N +I+AY+KT
Sbjct: 73 QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKT 132
Query: 78 SCSIESIKLFDEMLKTGLRP---DNLTYPFVVKA-SDQCLLIGVGGSVHSLIFKVGLHSD 133
S ES+ LF +ML G RP D T+ FV A S L G G +VH ++ K G SD
Sbjct: 133 PSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESD 191
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GN+L+ MY+ + AK +FDEMP+
Sbjct: 192 IFVGNSLVNMYSIFSRMVDAKRVFDEMPQ 220
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 12 LSKTAHHHH--QLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAY 67
LS HH H Q+ L +LD + +S+FI TSL +S + N P L Y
Sbjct: 31 LSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLY 90
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
NT I+A +KTS I +I L+ + GLRPD+ + P V+KA + + VG +H+
Sbjct: 91 NTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVS 150
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
L D + +L++MY++C + A+ LFD
Sbjct: 151 SALDMDVNVATSLIQMYSSCGFVSDARKLFD 181
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +FN MP + ++ TLI YA+T+ E+I+LF +M + PD + V+
Sbjct: 204 LKSARKVFNE-MPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLS 262
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + +G +H+ I K GL + N L+ MYA I A +F+ M +
Sbjct: 263 ACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQ 317
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-MPP 63
+L++ ++ Q+ +K L+ N + +R F T + R LF+ + P
Sbjct: 44 SLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPN 103
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF +NT+IR Y++ + L+ EML+ G++PD T+PF+ K + + + G +H
Sbjct: 104 LFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHG 163
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL + ++ L++MY C ++D A+ +FD P+
Sbjct: 164 HVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 202
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
T I+S F T+L + R+ F+ MP ++ +I Y +++ E+++LF M
Sbjct: 310 TTIVSGF--TNLG-EIDVARNYFDK-MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQA 365
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
T ++PD T V+ A + +G + + I + + +D ++ N L+ MY C ++D
Sbjct: 366 TNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDK 425
Query: 153 AKALFDEMPE 162
A+++F EM +
Sbjct: 426 AESIFREMSQ 435
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRA 73
+ QL LK L +N ++ + + + L L R +F+ V P + +N +I A
Sbjct: 156 EYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFD-VCPKADVITWNMIISA 214
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
Y K ES +LF M + P +T V+ A + + G VHS + + S+
Sbjct: 215 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 274
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEM 160
+ N ++ MYA C E+D A +F M
Sbjct: 275 LVLENAMIDMYADCGEMDSALGIFRSM 301
>gi|296090683|emb|CBI41082.3| unnamed protein product [Vitis vinifera]
Length = 413
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
Query: 21 QLPALFLKTSLDHNTYIIS----RFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
Q+ AL +KTSLD N ++++ R S L + RS+F+ + P F +NT+IRAY
Sbjct: 15 QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 74
Query: 76 KTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ ES+ LF +M P D+ + V++A + G G +H+ + K+GL SD
Sbjct: 75 NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 134
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
++ L+ MYA +I+ A+ + DEM
Sbjct: 135 FVETALIEMYAKFGDIEIARNILDEM 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 50 LHFTRSLFNNVMPP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
+ R++ + + P L ++NT+I +A S E+++LF EM + PD +T V
Sbjct: 150 IEIARNILDEMAHPDLRDLVSWNTMIHGHASLGDSNEALRLFHEMQLANVLPDKVTMVSV 209
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
+ A +G+G +H I + + D +G +L+ MYA C +ID
Sbjct: 210 LSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDID 255
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 18/174 (10%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPI-SLHFTRSLFNNV-M 61
+ L QLS + Q L K+ L ++ ++IS+ I L+ P+ SL + +++F + M
Sbjct: 10 LSKLQQLS-SVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTM 68
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG--- 118
F NT+IRAYAK+ I++I L++ M + ++ D+ YPF +KA + L G
Sbjct: 69 DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIK 128
Query: 119 ----------GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H +F++GL D +I N+L+ +Y+ C +D A+ +FDEM E
Sbjct: 129 CTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTE 182
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + ++ LF EM + ++T V+ A + + +G +H +
Sbjct: 249 SWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSL 308
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + Y+ N L+ MYA C ++ A +F E+
Sbjct: 309 KQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSEL 343
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 6/166 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQ---LPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFN 58
+ Q E+L+ + H + L AL L + ++ + S+ T + LF+
Sbjct: 11 AAQCESLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFD 70
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIG 116
+ P LF++N ++R Y + +++ LF EML +G PD TYP V+KA LI
Sbjct: 71 KLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLID 130
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VG +H FK G SD ++ NTLL MY E + A+ +FD M E
Sbjct: 131 VGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQE 176
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NT+I Y + +C+ +++ ++ M+ G+ PD T V+ A + +G VH+
Sbjct: 179 VISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHT 238
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ + G + + N L+ MY C ++ A L M +
Sbjct: 239 LVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDD 277
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 47/92 (51%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ + + + E+I+LF +ML ++PD+ T+ ++ A + ++H +
Sbjct: 384 WNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLI 443
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G + + L+ +Y+ C + +A +F+
Sbjct: 444 RSGFLYRLEVASILVDIYSKCGSLGYAHQIFN 475
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ A LK +L +++ + I SL + ++FN + P + YNTLIRA+ + S
Sbjct: 35 QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+ + +F EM +G+ DN TYPF++KA + + V +H+ + K+G D ++ N
Sbjct: 95 EPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPN 154
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ Y E+ A+ LFDEMPE
Sbjct: 155 SLIDSYFKLGELGEARRLFDEMPE 178
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM- 90
N+ I S F L L + R LF+ MP ++NT++ Y K + +LF++M
Sbjct: 154 NSLIDSYFKLGELGEA----RRLFDE-MPERDTVSWNTILDGYVKAGEMNAAFELFEKMP 208
Query: 91 ---------LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
++ GL+ D+ T ++ A L+G+G VH+ I + + N L+
Sbjct: 209 ARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALI 268
Query: 142 RMYAACKEIDFAKALFDEM 160
MYA C ++ A ++F M
Sbjct: 269 DMYAKCGSLENALSIFHGM 287
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-MPP 63
+L++ ++ Q+ +K L+ N + +R F T + R LF+ + P
Sbjct: 23 SLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPN 82
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF +NT+IR Y++ + L+ EML+ G++PD T+PF+ K + + + G +H
Sbjct: 83 LFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHG 142
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL + ++ L++MY C ++D A+ +FD P+
Sbjct: 143 HVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 181
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
T I+S F T+L + R+ F+ MP ++ +I Y +++ E+++LF M
Sbjct: 289 TTIVSGF--TNLG-EIDVARNYFDK-MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQA 344
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
T ++PD T V+ A + +G + + I + + +D ++ N L+ MY C ++D
Sbjct: 345 TNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDK 404
Query: 153 AKALFDEMPE 162
A+++F EM +
Sbjct: 405 AESIFREMSQ 414
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRA 73
+ QL LK L +N ++ + + + L L R +F+ V P + +N +I A
Sbjct: 135 EYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFD-VCPKADVITWNMIISA 193
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
Y K ES +LF M + P +T V+ A + + G VHS + + S+
Sbjct: 194 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 253
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEM 160
+ N ++ MYA C E+D A +F M
Sbjct: 254 LVLENAMIDMYADCGEMDSALGIFRSM 280
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 52 FTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+TR +F+ + + +N +IR+Y +++ +F M G PDN TYP V+KA
Sbjct: 89 YTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACS 148
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ VG +H + K+GL + YIGN L+ MY CK +D A+ + DEMP
Sbjct: 149 VSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMP 199
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y + E++ L+ +M G+ PD ++ V+ A +G +H
Sbjct: 271 LISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHE 330
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + L + + N L+ MYA C + A+A+FD+M
Sbjct: 331 YVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQM 367
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R++F+ +M + ++ ++I AY + +++ LF +M +G PD + + V+ A
Sbjct: 357 LKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAA 416
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ G +L+ + G+ N ++ + +ID A L +MP
Sbjct: 417 CSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMP 469
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAYNT 69
K+ H Q+ A + L + +++ F +L++ +F + P L YN
Sbjct: 48 KSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNL 107
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I+A+AK ++ LF ++ + GL PDN TYPFV KA + + L+ K G
Sbjct: 108 IIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTG 167
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L D Y+ N+L+ MYA D K LFDEMP+
Sbjct: 168 LEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPD 200
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKT 77
+L L KT L+ +TY+ + I ++L + + MP + ++N +I Y K
Sbjct: 157 EKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKC 216
Query: 78 SCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
++I +F M + +GL PD T + A + +G +H + + + I
Sbjct: 217 RRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYV-RDNVKFTPII 275
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
GN LL MY C + A+A+F+EMP
Sbjct: 276 GNALLDMYCKCGCLSIARAVFEEMP 300
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF + + + +I Y + + E++ LF EM ++PD ++
Sbjct: 319 ELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLT 378
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
Q I G +H I + + D +G L+ MYA C I+ A +F
Sbjct: 379 GCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIF 428
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 90/163 (55%), Gaps = 5/163 (3%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
++ ++ +LI+ K+ + Q+ A L S+ +++S+ I L + +FN +
Sbjct: 32 LTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDLK---DLAYASLVFNQLT 88
Query: 62 PP-LFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P ++A+N ++R A T + ++L+ ++ GL+ +N TYPF+ A + G
Sbjct: 89 KPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGK 148
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H L+FK GL D+Y+ ++L+ MYA C E+ FA+ +FDEM +
Sbjct: 149 IGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGD 191
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIE 82
L K LD + Y+ I + + + F R +F+ + L ++N++I Y+K + E
Sbjct: 153 LVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKE 212
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+I LF EM + G PD +T V+ A +G+G V + + + + Y+G+ L+
Sbjct: 213 AIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALID 272
Query: 143 MYAACKEIDFAKALFDEMP 161
MY C ++ A+ +FD MP
Sbjct: 273 MYGKCGDLISARRVFDSMP 291
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 22 LPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTS 78
+ L+ ++ N+Y+ S I + L R +F++ MP + +N +I YA+
Sbjct: 251 VEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDS-MPNKDVVTWNAIITGYAQNG 309
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
S E+I LF+ M + G PD +T V+ A + +G V + + GL D Y+ +
Sbjct: 310 ASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVAS 369
Query: 139 TLLRMYAACKEIDFAKALFDEMP 161
L+ MYA C +D A +F+ MP
Sbjct: 370 ALIDMYAKCGSLDDAVRVFESMP 392
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 21 QLPALFLKTSL---DHNTYIISRFILTSLPIS--LHFTRSLFNNV-MPPLFAYNTLIRAY 74
QL A LK+ +H F ++L S L++ R + + P F YNT+IRAY
Sbjct: 11 QLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFYYNTMIRAY 70
Query: 75 AKTSCSIESIKLF------DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
+ ++ + LF D+ RPD+ TYPFV+KA + G +H L+FK
Sbjct: 71 SDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKS 130
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G+ SD+YI N L+ +Y+ E + A +FD+MP+
Sbjct: 131 GVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPD 164
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 9 LIQLSKTAHHH--HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-- 63
L SK+ H Q+ L K+ + + YI + I L S+ + +F+ MP
Sbjct: 108 LKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDK-MPDRD 166
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I + IE+I+LF M++ G+ P+ +T V++A + G +HS
Sbjct: 167 VVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHS 226
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + S+ + L+ MYA C ID A +FDE E
Sbjct: 227 FVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLE 265
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL---HFTRSLFNNVM-PP 63
+L++ K+ Q+ A L + +++ + S+ SL ++ +FN + P
Sbjct: 13 SLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPS 72
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF YN +I+A+ K+ +I LF ++ + G+ PDN TYP+V+K + G VH+
Sbjct: 73 LFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHA 132
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL D Y+ N+ + MYA ++ +F+EMP+
Sbjct: 133 FVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPD 171
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I Y + + E+I LF EM G++PD ++ Q + G +H+ I
Sbjct: 309 WTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYID 368
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + D +G L+ MYA C I+ + +F+ + E
Sbjct: 369 ENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKE 404
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAY 74
++ A +KT L+ + Y+ + F+ L + FT+ ++N +I Y
Sbjct: 125 REGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGY 184
Query: 75 AKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ E++ ++ M ++ +P+ T + A + +G +H I L
Sbjct: 185 VRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASE-LDLT 243
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEM 160
+GN LL MY C + A+ +FD M
Sbjct: 244 TIMGNALLDMYCKCGHVSVAREIFDAM 270
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 21 QLPALFLKTSLDHNT--YIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
Q+ A ++ HN+ ++ SR + S I + +FN + P F +NTLI A A++
Sbjct: 43 QIHAQAIRNFSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARS 102
Query: 78 SCSIE-SIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
E +I++F ML+ G + PD T+PF++KA + G H+ IFK+GL D Y
Sbjct: 103 LDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVY 162
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+GN+L+ +YA+C + A +F++MP
Sbjct: 163 VGNSLIHLYASCGCLSMALKVFEKMP 188
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q A K LD + Y+ + I L + L +F + + L ++N +I AY ++
Sbjct: 147 QAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSG 206
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG---LHSDKY 135
++KLF EM + PD T +V A + +G H+ + + + D
Sbjct: 207 LFENALKLFVEM-QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVL 265
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
I ++L+ MY+ C + A+ +F+ MP+
Sbjct: 266 INSSLVDMYSKCGSLRMAQQVFETMPK 292
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
++++ + S+++ S+F + P F + T+IR Y ++ ++EM++ G+
Sbjct: 70 VLAKCAHSGWENSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGI 129
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PDN TYP ++KA + I G +H +FK+GL +D ++ N+L+ MY C E++ +
Sbjct: 130 EPDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSST 189
Query: 156 LFDEM 160
+F+++
Sbjct: 190 VFEKL 194
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
Y+ +I +A ++++F EM+K GL PD++ Y ++ A L+ G V +
Sbjct: 304 YSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEML 363
Query: 127 KVG 129
K G
Sbjct: 364 KEG 366
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 34 NTYIISRFILTSLPIS--LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEML 91
NT +I+ + + P+ L F R L N LF +N L+ Y + E+I F E++
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKN----LFQWNALVSGYVRNELYDEAIHTFLELI 201
Query: 92 K-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
T +PDN T+P ++KA I +G SVH + K+GL D ++GN ++ +Y C +
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261
Query: 151 DFAKALFDEMPE 162
D A LFD+MPE
Sbjct: 262 DEAVELFDKMPE 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYI----ISRFILTSLPISLHFTRSLFNNVMPP- 63
L+Q K H L+ L+ N+++ +S + S P + R+ F +
Sbjct: 532 LLQYGKEIH------GFVLRNGLEMNSFVAVSLLSLYFHCSKPF---YGRTYFERMGDKN 582
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+N ++ Y++ E++ LF +ML GL PD + ++ A Q +G+G VH
Sbjct: 583 SVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHC 642
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K L D ++ +L+ MYA + ++ +F+ +
Sbjct: 643 FALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRL 679
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLI 71
LS A H + L F L +N +I + SL + H F + ++N +I
Sbjct: 433 LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHV---FFGMNTKSVSSWNAVI 489
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
+A+ I+++ + EM + G+ PD+ + ++ A + L+ G +H + + GL
Sbjct: 490 GGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLE 549
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++ +LL +Y C + + + F+ M
Sbjct: 550 MNSFVAVSLLSLYFHCSKPFYGRTYFERM 578
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSV 121
L ++N+LIR +++ +E+ + F +L++G L PD T ++ + VG +
Sbjct: 276 LISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVI 335
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H + K+GL + + N L+ MY+ C + A LF ++
Sbjct: 336 HGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKI 374
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 34 NTYIISRFILTSLPIS--LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEML 91
NT +I+ + + P+ L F R L N LF +N L+ Y + E+I F E++
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKN----LFQWNALVSGYVRNELYDEAIHTFLELI 201
Query: 92 K-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
T +PDN T+P ++KA I +G SVH + K+GL D ++GN ++ +Y C +
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261
Query: 151 DFAKALFDEMPE 162
D A LFD+MPE
Sbjct: 262 DEAVELFDKMPE 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYI----ISRFILTSLPISLHFTRSLFNNVMPP- 63
L+Q K H L+ L+ N+++ +S + S P + R+ F +
Sbjct: 532 LLQYGKEIH------GFVLRNGLEMNSFVAVSLLSLYFHCSKPF---YGRTYFETMGDKN 582
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+N ++ Y++ E++ LF +ML GL PD + ++ A Q +G+G VH
Sbjct: 583 SVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHC 642
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K L D ++ +L+ MYA + ++ +F+ +
Sbjct: 643 FALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRL 679
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLI 71
LS A H + L F L +N +I + SL + H F + ++N +I
Sbjct: 433 LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHV---FFGMNTKSVSSWNAVI 489
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
+A+ I+++ + EM + G+ PD+ + ++ A + L+ G +H + + GL
Sbjct: 490 GGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLE 549
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++ +LL +Y C + + + F+ M
Sbjct: 550 MNSFVAVSLLSLYFHCSKPFYGRTYFETM 578
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSV 121
L ++N+LIR +++ +E+ + F +L++G L PD T ++ + VG +
Sbjct: 276 LISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVI 335
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H + K+GL + + N L+ MY+ C + A LF ++
Sbjct: 336 HGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKI 374
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 2/164 (1%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNN 59
++ + +L+Q KT+ HQ+ A + +N YI + + + + + R LF+
Sbjct: 36 LLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQ 95
Query: 60 VMPPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P A +N++ R YA++ E + LF +M +RP+ T+P V+K+ + + G
Sbjct: 96 IPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEG 155
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + K G + ++G TL+ MY+A + A +F EM E
Sbjct: 156 EQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFE 199
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++N LI YA E + F ML ++ + P++ T V+ A + + +G VH
Sbjct: 295 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 354
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
GL + Y+GN L+ MYA C I+ A ++F M
Sbjct: 355 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 392
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP- 63
I TL++ T Q+ A ++ L + +IIS+F+ +S +T S+FN V P
Sbjct: 76 ISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPS 135
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+NT I+ Y++ ++ LF M ++ PD TYP ++KA + + G + H
Sbjct: 136 TVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHG 195
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ D ++ +L+ +Y C EI A+ +FDEM E
Sbjct: 196 SAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGE 234
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 47 PISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
P ++ +LF + P L +N +IR ++ + E+I++++ M + GL +NLTY F+
Sbjct: 24 PSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFL 83
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KA + + G ++H+ + K+G S Y+ N L+ MY +C + A+ +FDEMPE
Sbjct: 84 FKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPE 140
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ + + ++ +I +Y++ E+++LF EM+++ ++PD +T V+ A
Sbjct: 264 RELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHT 323
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ VG + H I K + +D Y+GN L+ MY C ++ A +F EM
Sbjct: 324 GSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEM 371
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N+L+ Y + E + +F+ M G++ D +T VV A GV ++
Sbjct: 143 LVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVD 202
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + + D Y+GNTL+ MY + A+ +FD+M
Sbjct: 203 YIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQM 239
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP- 63
I TL++ T Q+ A ++ L + +IIS+F+ +S +T S+FN V P
Sbjct: 28 ISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPS 87
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+NT I+ Y++ ++ LF M ++ PD TYP ++KA + + G + H
Sbjct: 88 TVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHG 147
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ D ++ +L+ +Y C EI A+ +FDEM E
Sbjct: 148 SAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGE 186
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A++ LI Y + E++K+F EM ++PD ++ A Q + + V
Sbjct: 282 VVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDD 341
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K + +H I L+ M A C +D A LF+EMP+
Sbjct: 342 YVRKSSIDVHRAHVIA-ALIDMNAKCGSMDRATKLFEEMPK 381
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPI--SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSC 79
A L L +++ +SR + S P+ SL LF + P + NT+I+A+
Sbjct: 26 AQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIKAFVLKGK 85
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
I +I+++ +ML+ GL PDN T P+V+KA +G S H K+G D ++GNT
Sbjct: 86 LINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNT 145
Query: 140 LLRMYAACKEIDFAKALFDEMP 161
L+ MY++ + A+ +FDEMP
Sbjct: 146 LIAMYSSFGNVRAARCIFDEMP 167
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ M + ++I Y + +C E +++F M TGL PD ++ A
Sbjct: 190 ARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAH 249
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH + ++G + L+ MYA C +D AK LFD M +
Sbjct: 250 LGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQ 300
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNV-MP 62
+LI Q+ A L+T L + + SR I L+ P SL + + +F+ + P
Sbjct: 40 SLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFP-SLDYAQQVFDQIPHP 98
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
L+ +NTLIRAYA +S +S+ +F ML ++ PD T+PF++KA+ + + G +
Sbjct: 99 NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H ++ KV L SD +I N+L+ YA C E+ +F +P
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIP 198
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNV-MP 62
+LI Q+ A L+T L + + SR I L+ P SL + + +F+ + P
Sbjct: 40 SLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFP-SLDYAQQVFDQIPHP 98
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
L+ +NTLIRAYA +S +S+ +F ML ++ PD T+PF++KA+ + + G +
Sbjct: 99 NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H ++ KV L SD +I N+L+ YA C E+ +F +P
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIP 198
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++I A+ + C E+++LF EM ++P+ +T V+ A + G VHS
Sbjct: 202 VVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHS 261
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + + + N +L MY C ++ AK LFD+MPE
Sbjct: 262 YIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPE 300
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 59 NVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLI 115
+ MP + A+N LI AY + E+++LF E+ L +PD +T + A Q +
Sbjct: 327 DAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAM 386
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+GG +H I K G+ + ++ +L+ MY C ++ A +F
Sbjct: 387 DLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVF 428
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLF 65
+LI S H +Q+ A + L +N ++I++ + + + + R++F+ P +F
Sbjct: 51 SLIDNSVNRSHLNQIHAQLFVSRLQYNGFLITKLVNCCATLGEIRYARNVFDYYPDPDVF 110
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL-LIGVGGSVHSL 124
+N +IR Y + + +I+++ M +RPD T+P V+KA L + +G VH
Sbjct: 111 LWNAIIRCYTRQNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQ 170
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
F+ GL +D ++ N L+ YA C++I A +F + +
Sbjct: 171 AFRHGLEADVFVQNGLVTFYAKCRKISLANIVFGRLSD 208
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
F R F+ V +P L +N +I YAK + E+++LF M+ PD++T V+ A
Sbjct: 299 FARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACA 358
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
Q + + + I + +D ++ + L+ M++ C +D A+ +FD
Sbjct: 359 QMGSLELARWMSDYIGRSEFRNDAFVSSALIDMFSKCGSVDLARDVFDR 407
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 56/97 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I YA+ IE++++F++M + ++PD + V++A + G S+H
Sbjct: 211 IVSWTSIISGYAQNGQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHG 270
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+GL + + +L MYA C ++ FA+ FD++
Sbjct: 271 CVIKMGLEFEIDLLISLTAMYAKCGQVMFARLFFDQV 307
>gi|147821710|emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]
Length = 717
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 46 LPISLHFTRSLFNNVMPPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
P L + +++F+++ P + YN+LIRA + + +E++ L+ L++GL+PD++TYPF
Sbjct: 145 FPTFLAYAKTIFHHLQNPSPSLYNSLIRALSSSKTPLEALPLYHTKLQSGLKPDHMTYPF 204
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
V+KA ++ + G VH+ + K G D YI ++L+ +YA K++ AK LF+
Sbjct: 205 VIKACNESSMTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLVAAKQLFN 258
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVM 61
S++ L+Q H + A ++ +L + ++ + + + + +F+ +
Sbjct: 32 SQEALNLLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLLRLCFSYQKVDYATLIFDQIQ 91
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F +N +IRAY S +++ L++ M+ G PD T+PFV+KA + G
Sbjct: 92 NPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKE 151
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH K G D ++ NTL+ +Y C ++D+A+ LFD+M
Sbjct: 152 VHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKM 191
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R+ F+ + M + ++ +I Y K E+ +LF M +RP+ T +++
Sbjct: 211 ELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLR 270
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + + +G +H + G ++G L+ MY+ C I+ AK +F+EM +
Sbjct: 271 ACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQK 325
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL----PISLHFTRSLFNNVM 61
I + + +K+ Q A LKT L H+T+ S+ + + P ++ + S+ N +
Sbjct: 42 ILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIG 101
Query: 62 PPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F +N++IRAYA +S ++ +F EML + PD ++ FV+KA G
Sbjct: 102 SPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQ 161
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H L K GL +D ++ NTL+ +Y + A+ + D MP
Sbjct: 162 IHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMP 202
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N ++ AYA C E +++F++ML +PD T V+ A + G VH
Sbjct: 270 SWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVY 329
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I K G+ + ++ L+ MY+ C +ID A +F
Sbjct: 330 IDKHGIEIEGFLATALVDMYSKCGKIDKALEVF 362
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 25/161 (15%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMPP------------LFAY 67
Q+ A LKT L +N I+++F TS + S+H+ S + PP F +
Sbjct: 36 QIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSF---LFPPSHTTSTPTPSYDAFLF 92
Query: 68 NTLIRAYAKTSCSIESIKLF-DEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHS 123
NTLIRAY++T S + LF ML+ G+ P+ T+PFV+K C IG +G VH
Sbjct: 93 NTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKG---CAGIGSLRLGKCVHG 149
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKE--IDFAKALFDEMPE 162
+ K G D ++ NTL+ MY E +FA+ +FD+ P+
Sbjct: 150 CVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPK 190
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I + + CS ++ LF EM G+ PD +T V+ A + +G V S +
Sbjct: 196 WSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVE 255
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + + N L+ M+A C +D A LF +M
Sbjct: 256 KKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQM 289
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLP-----ISLHFTRSLF 57
+++ L++ K+ H Q A T L++NT+ +SR + SL + +F
Sbjct: 5 TKRCLVLLEKCKSMKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVF 64
Query: 58 NNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ P + YNTLI+A+ + ++++F +ML++ L+PDN T P+V+KA
Sbjct: 65 EQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCS 124
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G +H K+GL D Y+GN+L+ MY ++ A+ +FDE+P
Sbjct: 125 FGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIP 169
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I Y + SC ES+ LF M T + PD + ++ A + +G +H +
Sbjct: 207 WGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLN 266
Query: 127 KVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ L + +LL MYA C ++ AK LFD M
Sbjct: 267 QLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSM 301
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 7/160 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNV-MP 62
+LI Q+ A L+T L + + SR I L+ P SL + + +F+ + P
Sbjct: 40 SLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFP-SLDYAQQVFDQIPHP 98
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
L+ +NTLIRAYA +S +S+ +F ML ++ PD T+PF++KA+ + + G +
Sbjct: 99 NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H ++ KV L SD +I N+L+ YA C E+ +F P
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXP 198
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 41 FILTSLPISLHFT----------RSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEM 90
FIL SL +HF R N + ++N++I A+ + C E+++LF EM
Sbjct: 172 FILNSL---IHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228
Query: 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
++P+ +T V+ A + G VHS I + + + N +L MY C +
Sbjct: 229 ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSV 288
Query: 151 DFAKALFDEMPE 162
+ AK LFD+MPE
Sbjct: 289 EDAKRLFDKMPE 300
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 5/144 (3%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
++ A +KT L +T SR + TS +++ +F + P LF +NT+IR +++
Sbjct: 13 QKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQ 72
Query: 77 TSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+S +I LF +M+ T +P LTYP V KA Q L G +H + K+GL +D+
Sbjct: 73 SSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQ 132
Query: 135 YIGNTLLRMYAACKEIDFAKALFD 158
+I NT+L MY C + A+ +FD
Sbjct: 133 FIQNTILNMYVNCGFLGEAQRIFD 156
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+R LF+ ++ ++N++I Y + E+++LF M + G++P T ++ A
Sbjct: 182 SRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNA--- 238
Query: 112 CLLIGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
C +G G +H I K + + ++ MY+ C ID A +F P+
Sbjct: 239 CACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPK 292
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
NT +I + + P+ +R +F+N+ L +N L+ Y + + +K+F +++
Sbjct: 82 NTRLIKMYAMCGSPLD---SRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVS 138
Query: 93 -TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
T +PDN T+P V+KA L + +G +H ++ K+GL D ++GN L+ MY C +D
Sbjct: 139 DTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVD 198
Query: 152 FAKALFDEMPE 162
A +FD MPE
Sbjct: 199 EAMKVFDFMPE 209
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +A+ +++ L +M +G +PD T ++ A + G +H +
Sbjct: 418 SWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYV 477
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL +D ++G +LL Y C + A+ LFD M +
Sbjct: 478 LRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKD 514
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLI 115
+ MP L ++N++I A+++ S +S L EML + GL PD +T ++ +
Sbjct: 205 DFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEV 264
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+G +H L K+GL + + N ++ MY+ C ++ A+ F
Sbjct: 265 DIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSF 306
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIK 85
L+T T ++S +I S R LF+ + L ++N +I Y++ ES+
Sbjct: 482 LETDFFVGTSLLSHYIHCGKASS---ARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLA 538
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
LF + L G++ + V A Q + +G H + K D ++G +++ MYA
Sbjct: 539 LFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYA 598
Query: 146 ACKEIDFAKALFDEMPE 162
I ++ +FD + +
Sbjct: 599 KSGCIKESRKVFDGLKD 615
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
N ++ LI Y + E+++LF +M + GLRPD T+ ++KAS +IG+
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +HS + + G S + G+ L+ MYA C +D A FDEMPE
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAK 76
HQ+ AL L+++ N ++ + + S L R LF+ MP +YN +I AYA
Sbjct: 256 HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDE-MPERDNVSYNVIIAAYAW 314
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
C+ ++LF EM K G L Y ++ + + +G +H+ + +GL S+ +
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GN L+ MY+ C +D AK+ F E
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSE 400
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
YN ++ +K ++++LF M + G+ + T+ ++ + + +G VH+L+
Sbjct: 204 YNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVL 263
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + ++ N+LL Y+ C +D + LFDEMPE
Sbjct: 264 RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++RA+A + +++ LF ML G+ PD +T V+ C + S+H
Sbjct: 108 WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPG-CTV----PSLHPFAI 162
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL + ++ NTLL Y + A+ +F EM
Sbjct: 163 KFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEM 196
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS--LPISLHFTRSLFNNVM 61
+Q+ L+ H HQ A L +LDH+ ++S FI +S L SL + SLF ++
Sbjct: 12 KQVIWLLNHCSNLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSLGFSL-YAYSLFTSLT 70
Query: 62 --PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P +F YNT+IRA + + SI LF+ + LRPD+ ++PF +KA + G
Sbjct: 71 HPPNIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGL 130
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
HS + GLHS ++ +L+RMY++ I A+ LFD +P
Sbjct: 131 QFHSQAIRFGLHSHLHVLVSLIRMYSS-SHISDARKLFDGIP 171
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++ LI YA + ++I +F M + PD +T V+ A Q + +G + +
Sbjct: 208 LISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRN 267
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I GLH + + N L+ MYA I A +F+ M
Sbjct: 268 YIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESM 304
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFA 66
L+ L KT + + A + + + +I +R I S L R +F+N+ P +F
Sbjct: 26 LLNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFC 85
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
N +I+ YA E++K++D M G+ P+ TYPFV+KA G +H
Sbjct: 86 CNVVIKVYANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAV 145
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K G+ D ++GN L+ YA C++++ ++ +FDE+P
Sbjct: 146 KCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIP 180
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +NTLIRA + + ++ M++ G++PD TYPFV+K + + G VH +
Sbjct: 104 FLWNTLIRANSIAGV-FDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGV 162
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
FK+G D ++GNTLL Y C A +FDEMPE
Sbjct: 163 AFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPE 200
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L+ +++FN + +YN LI Y++T+ S+ES++LF EM G+RPD +++ VV A
Sbjct: 494 LNLAQNVFNISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSAC 553
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I G +H L+ + H+ ++ N+LL +Y C ID A +F
Sbjct: 554 ANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVF 601
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESI 84
LK +++ + +I + I + + S ++FN + + + ++N +I +A+ E++
Sbjct: 369 LKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAV 428
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+L +M G P+N+T+ V+ A + + VG +H+ I +VG D ++ N L MY
Sbjct: 429 ELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMY 488
Query: 145 AACKEIDFAKALFD 158
+ C ++ A+ +F+
Sbjct: 489 SKCGCLNLAQNVFN 502
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 53/97 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I +++ ++++ +F M+ G+RP+++T ++ + L +G VH
Sbjct: 307 VISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHG 366
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+ + SD +I N+L+ MYA A +F++M
Sbjct: 367 FSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKM 403
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 27 LKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIK 85
L + D ++I + S P++ H +L N P +F +NT+IR +A++ +I+
Sbjct: 69 LPNNPDMGKHLIYSIVSVSAPMTYAHNIFTLIQN--PNIFTWNTMIRGHAESENPKPAIE 126
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
L+ + + PD TYPF++KA + + + VG +HS+ + G S ++ N+L+ MYA
Sbjct: 127 LYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRVGEKIHSISIRNGFESLVFVQNSLMHMYA 186
Query: 146 ACKEIDFAKALFDEMPE 162
AC + + A LF+ MP+
Sbjct: 187 ACGQYESAHKLFEFMPD 203
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+NT I +A E++KL+ EM G+ PD T ++ A + + +G +H+
Sbjct: 206 LVAWNTAISGFALNGKPNEALKLYMEMGLEGVEPDGFTLVSLLSACAELGALALGRRIHA 265
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ KVGL + + N+L+ +YA C I A+ +FDEM
Sbjct: 266 YMVKVGLDENLHANNSLIDLYAKCGRIRDAQQVFDEM 302
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ LI Y + E+++LF +M + GLRPD T+ ++KAS +IG+G +HS +
Sbjct: 405 SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYL 464
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S + G+ L+ MYA C +D A FDEMPE
Sbjct: 465 IRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAK 76
HQ+ AL L+++ N ++ + + S L R LF+ MP +YN +I AYA
Sbjct: 256 HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDE-MPERDNVSYNVIIAAYAW 314
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
C+ ++LF EM K G L Y ++ + + +G +H+ + +GL S+ +
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GN L+ MY+ C +D AK+ F E
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSE 400
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
YN ++ +K ++++LF M + G+ + T+ ++ + + +G VH+L+
Sbjct: 204 YNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVL 263
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + ++ N+LL Y+ C +D + LFDEMPE
Sbjct: 264 RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++RA+A + +++ LF ML G+ PD +T V+ C + S+H
Sbjct: 108 WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPG-CTV----PSLHPFAI 162
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL + ++ NTLL Y + A+ +F EM
Sbjct: 163 KFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEM 196
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAY 67
+SKT H AL L+T L HN S+ F+ S L++ R LF + P F
Sbjct: 24 ISKTKQAH----ALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFIC 79
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
NT+IR YA++ E++ L+ M++ G+ DN TYPFV+ A + + +G H + K
Sbjct: 80 NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
G SD ++ N L++ Y C A +FDE
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDE 171
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVM-PPLFAY 67
+SKT H AL L+T L HN S+ F+ S L++ R LF + P F
Sbjct: 24 ISKTKQAH----ALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFIC 79
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
NT+IR YA++ E++ L+ M++ G+ DN TYPFV+ A + + +G H + K
Sbjct: 80 NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
G SD ++ N L++ Y C A +FDE
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDE 171
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +I A+ S ++ L DEM K LRPD +T +V A Q + G +HS
Sbjct: 180 WNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYS 239
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GL + + N +L MY C +I+ A+ +F+ + E
Sbjct: 240 KELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIRE 276
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 5/159 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKT-SLDHNTYIISRFILTSLPI--SLHFTRSLFNNVM-PP 63
+L++ SKT QL AL +KT + H + L + P +L + S+FN + P
Sbjct: 13 SLLKTSKTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPA 72
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L YN LI+ Y + S ++I LF ++L PD T P V+K + G +H
Sbjct: 73 LVLYNILIKCYIQNQLSHDAITLFSQLLHE-FNPDGFTLPCVIKGCARLHATKEGKQIHG 131
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ K+G +K++ ++L+ MY+ CK+ID AK +F M +
Sbjct: 132 LVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDD 170
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L ++N+++ Y E++ LF ML+ P++ T A + G
Sbjct: 261 MPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTG 320
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+HS + K G D + +L+ MY+ C I+ A ++F
Sbjct: 321 KWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVF 359
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +++N +IR E ++ L+ M +GL+PDN TY FV A + IGVG S
Sbjct: 91 PNHYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRS 150
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS +FKVGL D +I ++L+ MYA C + +A+ +FDE+ +
Sbjct: 151 VHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITD 192
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +FN ++ A+N +I Y++ S E+ KLF EM KTG+ PD T V+ A
Sbjct: 281 LDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSA 340
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G + + ++ L + Y+ L+ MY C I+ A +F+ MP
Sbjct: 341 CGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMP 393
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 26 FLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIES 83
K L+ + +I I+ L + R +F+ + + ++N++I Y++ + ++
Sbjct: 155 LFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDA 214
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF--KVGLHSDKYIGNTLL 141
+ LF +M + G PD T ++ A + G + + K+GL + ++G+ L+
Sbjct: 215 MDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLST--FLGSKLI 272
Query: 142 RMYAACKEIDFAKALFDEM 160
MY C ++D A+ +F++M
Sbjct: 273 TMYGKCGDLDSARRVFNQM 291
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI----SLHFTR---SLF---NNVMPP 63
KT QL + K L+H+ ++ I + + SL + + LF N +M
Sbjct: 44 KTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGT 103
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +++LIR ++ ++I +F +++ G PDN T+PFV+ A + + G VH
Sbjct: 104 HYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHG 163
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K+G D ++ N+L+ Y C EID + +FD+M E
Sbjct: 164 AIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSE 202
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +LI YAK C E++ LF EM++ G+RP+++T V+ A + + +G V + I
Sbjct: 207 SWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCI 266
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
++ L + + N L+ MY C ID A+ +FDE
Sbjct: 267 GELELEVNALMVNALVDMYMKCGAIDKARKIFDE 300
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 54 RSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ V L YNT++ Y + + E + + EMLK G RPD +T V A +
Sbjct: 295 RKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSEL 354
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G H + + GL + N ++ MY C + + A +FD M
Sbjct: 355 DDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRM 402
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT+I A + S E+I+LF M G+ D +T V A + + +H
Sbjct: 438 LVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHG 497
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K +H D ++G L+ M+A C + A +F++M
Sbjct: 498 YIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM 534
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNV 60
++ +L++ Q A LK L +++ S + T S S+ + S+F
Sbjct: 32 KECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQ- 90
Query: 61 MPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
M L F +NT++R + K + E++ + EM + G++PDN TYP ++KA + + G
Sbjct: 91 MDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEG 150
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+ I K+GL +D ++ N+L+ MY C EI A+F++M E
Sbjct: 151 MQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNE 194
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+Y+ +I A E +++F EML+ GL PD++ Y V+ A L+ G
Sbjct: 300 LSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG 353
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFN 58
M+ + T+ L K H QL +KT L +T SR + S +++ +F
Sbjct: 27 MLDKNCTTMKDLKKI---HSQL----IKTGLAKDTNAASRILAFCASPAGDINYAYLVFV 79
Query: 59 NVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIG 116
+ P +FA+NT+IR ++++S SI L+ +ML T ++P LTYP V KA Q L
Sbjct: 80 QIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLAS 139
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G +H + K+GL +D +I NT+L MY C A+ +FD
Sbjct: 140 EGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFD 181
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+R LF+ + + ++N++I Y + ++++LF +M + P T ++ A
Sbjct: 207 SRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACAC 266
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I G +H + K + + ++ MY+ C ID A +F P
Sbjct: 267 LGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAP 316
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F++N L+ YAK C E++ L+ ML +RP+ T+P V+K I G +H+
Sbjct: 163 VFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHA 222
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G SD +GN L+ MY C +I A+ LFD+MP+
Sbjct: 223 HVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPK 261
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP ++N +I Y + +E ++LF M + + PD +T V A +
Sbjct: 252 ARMLFDK-MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE 310
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G VH + K D + N+L++MY++ ++ A+ +F M
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGS 120
+ ++ +I + ++++ + M G+ PD +T V+ A C IG +G
Sbjct: 365 VVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSA---CACIGHLDLGIR 421
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+H + K GL S + N+L+ MY+ CK +D A +F
Sbjct: 422 LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVF 458
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 57 FNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
FN+ + A+N L+ YA+ + +++LFD+ML+ + PD +T+
Sbjct: 558 FNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F N+ + ++ +LI + S E++ F +M K ++P+++T V+ A C
Sbjct: 457 VFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSA---CAR 512
Query: 115 IGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
IG G +H+ + G+ D ++ N +L MY C
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRC 548
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 7/161 (4%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-----LTSLPISLHFTRSLFNNVMPP 63
++Q T QL +K +N ++++F L ++P ++ S+ + +
Sbjct: 13 ILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYD 72
Query: 64 LFAYNTLIRAYAKTSCSI-ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
F ++T+IRAYA++S S +I ++ ML G+ P+ +PFV+KA + +G +VH
Sbjct: 73 AFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVH 132
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACK-EIDFAKALFDEMPE 162
+ K G D ++ NT++ MY C ++FA+ LFDEMP+
Sbjct: 133 GSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPK 173
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ F R LF+ MP L + +I YA+ S ++ LF +M G+ PD++T V+
Sbjct: 160 GMEFARKLFDE-MPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVL 218
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G + S I K + + N L+ M+A C ++D A LF M
Sbjct: 219 SACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNM 272
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ LI Y + E+++LF +M + GLRPD T+ ++KAS +IG+G +HS +
Sbjct: 603 SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYL 662
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S + G+ L+ MYA C +D A FDEMPE
Sbjct: 663 IRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 699
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL------PISLHFTRSL 56
++ ++ + + + H L L S +T +++ F+ SL L R L
Sbjct: 432 TQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRL 491
Query: 57 FNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
F+ MP +YN +I AYA C+ ++LF EM K G L Y ++ +
Sbjct: 492 FDE-MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H+ + +GL S+ +GN L+ MY+ C +D AK+ F E
Sbjct: 551 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSE 598
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTS------LPISLH-FTRSLFNNVMPPLFAY 67
++ H H+ A+F + H IL++ LP + H F S N +
Sbjct: 269 SSGHLHRARAMF--DQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNAT----TW 322
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
++RA+A + +++ LF ML G+ PD +T V+ C + S+H K
Sbjct: 323 TIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPG-CTVP----SLHPFAIK 377
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
GL + ++ NTLL Y + A+ +F EM
Sbjct: 378 FGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEM 410
>gi|297739162|emb|CBI28813.3| unnamed protein product [Vitis vinifera]
Length = 500
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH----FTRSLFNNVMPP-LFAYN 68
KT Q+ A + T + + ++ SR IL+ +S H + R LF + P +F N
Sbjct: 82 KTLKDLTQIHAQTITTGIFSDNFVASR-ILSFAALSPHGSIPYARFLFYRIRKPDIFIAN 140
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
TLIRAYA + I+++ + EM ++ + PD T+P ++KA + + +G ++HS +FK
Sbjct: 141 TLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFK 200
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G S+ + N L++MYA+C I+ A +FD PE
Sbjct: 201 LGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPE 235
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVM 61
+ I TL++ T Q+ A ++ L + ++IS+F+ +S +T S+FN V
Sbjct: 25 TSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVS 84
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +NT I+ Y++ ++ LF M ++ PD TYP ++KA + + G +
Sbjct: 85 SPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA 144
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H + G+ D ++ +L+ +Y C EI A+ +FDEM E
Sbjct: 145 FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGE 186
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + R LF MP L A+NT+I AYA+ +E+ +FD MLK G+ PDN T+ ++
Sbjct: 125 LCYARKLFEE-MPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALR 183
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VHS + G D ++GN L+ MYA C + + +FDEM E
Sbjct: 184 VCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGE 238
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLF 65
TL + + Q+ A ++ ++ N + + + + S L++ + +FN + +
Sbjct: 286 TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 345
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + + E+++LF +M G++PD + ++ + G +H+ I
Sbjct: 346 SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI 405
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ + + + L+ MYA C +D+A ++D+
Sbjct: 406 VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ 439
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R++F+N+ + ++N +I Y+K CS E++ L++EM K G+ P+ +T+ ++ A
Sbjct: 511 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSH 570
Query: 112 CLLIGVGGSVHSLI---FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ G + + + + + ++ Y ++ + ++ AK ++MP
Sbjct: 571 TGLVEEGLRIFTSMQEDYNIEAKAEHYT--CMVDLLGRAGRLEDAKEFVEKMP 621
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKT--GLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+N++I A A+ +++ LF M ++ G++PD T+ ++ G +H+
Sbjct: 244 WNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAH 303
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + + + L+ MY+ C +++AK +F+ M E
Sbjct: 304 LIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 341
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-M 61
I + ++ KT Q+ +L +KTS+ N SR F S + + R++F+
Sbjct: 8 ILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQ 67
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
++ +N++I+ Y ++ +++EM + G PD+ T+PFV+K L+ G SV
Sbjct: 68 LTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSV 127
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ I K G D Y + LL MY +C +++ +F+ +P+
Sbjct: 128 HNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPK 168
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R+LF+ MP L +N++I A+++ E+++LF +M G P+ T+ V++A
Sbjct: 267 ARNLFDK-MPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSVIRACT 325
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S+H+ + K H IG L+ MYA + D A +F ++
Sbjct: 326 HLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADTALKIFSKL 375
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+ +LI + E+++LF +M G+ P+ +T + A+ +C I G V
Sbjct: 171 VVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRY 230
Query: 124 LIFKVGL---HSDKY----IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++GL H++ + ++ MYA C ++ A+ LFD+MP+
Sbjct: 231 RLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQ 276
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 59/96 (61%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ +I + K ++ K F E+++ G++PDN T PFV+KA + + +G +H ++
Sbjct: 1148 SWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVV 1207
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K GLH D ++ L+ MYA CK I+ AK LFD MP
Sbjct: 1208 LKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMP 1243
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+VMP L + +I YA+ + ES+ LFD + + G PD + +V A + +
Sbjct: 1240 DVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMN 1299
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH + + D +G ++ MYA C ++D A+ +FD M
Sbjct: 1300 KARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNM 1343
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAY 67
L+Q+ A HQ F NT +I+ + S+ + R LF+ + P + +
Sbjct: 47 LMQIQAYAIKSHQEDVSF-------NTKLINFCTESPTESSMSYARHLFDAMSEPDIVIF 99
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N++ R Y++++ +E LF E+L+ L PDN T+P ++KA + G +H L K
Sbjct: 100 NSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMK 159
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G+ + Y+ TL+ MY C+++D A+ +FD + E
Sbjct: 160 LGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVE 194
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNT 69
++K QL L +K +D N Y+ I + + + R +F+ ++ P + YN
Sbjct: 143 VAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNA 202
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIF 126
+I YA+ + E++ LF EM L+P+ +T V+ + C L+G +G +H
Sbjct: 203 MITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSS---CALLGSLDLGKWIHEYAK 259
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + L+ M+A C +D A ++F+ M
Sbjct: 260 KHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENM 293
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ +I + K + F E+++ G +PDN + PFV+KA + + +G +HS +
Sbjct: 68 SWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTV 127
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GLH D ++ +TL+ MYA C ID AK LFD MP+
Sbjct: 128 LKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPK 164
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ LF+ MP L +I YA+ ES LFD+M + G PD + +V A
Sbjct: 155 AKQLFDR-MPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACA 213
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + VH + D +G ++ MYA C ID ++ +FD M +
Sbjct: 214 KLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQ 265
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLH----FTRSLFNNVMPP-LFAYNTLIRAYA 75
Q+ A + T + + ++ SR IL+ +S H + R LF + P +F NTLIRAYA
Sbjct: 53 QIHAQTITTGIFSDNFVASR-ILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYA 111
Query: 76 KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ I+++ + EM ++ + PD T+P ++KA + + +G ++HS +FK+G S+
Sbjct: 112 FSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEV 171
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N L++MYA+C I+ A +FD PE
Sbjct: 172 SVSNFLVQMYASCGLIESAGLVFDRTPE 199
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F++N L+ YAK C E++ L+ ML +RP+ T+P V+K I G +H+
Sbjct: 163 VFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHA 222
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G SD +GN L+ MY C +I A+ LFD+MP+
Sbjct: 223 HVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPK 261
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ MP ++N +I Y + +E ++LF M + + PD +T V A +
Sbjct: 253 RMLFDK-MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G VH + K D + N+L++MY++ ++ A+ +F M
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
++ +I + ++++ + M G+ PD +T V+ A C IG +G +H
Sbjct: 367 SWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSA---CACIGHLDLGIRLH 423
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ K GL S + N+L+ MY+ CK +D A +F
Sbjct: 424 EIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVF 458
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVH 122
++ +LI + S E++ F +M K ++P+++T V+ A C IG G +H
Sbjct: 468 SWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSA---CARIGALMRGKEIH 523
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAAC 147
+ + G+ D ++ N +L MY C
Sbjct: 524 AHALRTGVGFDGFLPNAILDMYVRC 548
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 57 FNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
FN+ + A+N L+ YA+ + +++LFD+ML+ + PD +T+
Sbjct: 558 FNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603
>gi|317106604|dbj|BAJ53111.1| JHL07K02.1 [Jatropha curcas]
Length = 248
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKT---SLDHNTYIISRFILTSLPIS---------LHFT 53
I LI+ KT HH HQL A + SL+ ++ I IL SL + L +
Sbjct: 14 INNLIKQCKTIHHLHQLHANAITNGFLSLNSSSQKILTKILYSLNATATSKSSTSLLQYA 73
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
S+F+ + P F YN +IRA+ S + +++ F +M + + PD ++PFV KA Q
Sbjct: 74 VSVFSAITNPSPFCYNLVIRAHTLHSSPLSALRFFLQMRRFSIPPDFHSFPFVFKACSQL 133
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + S+HS FK G SD Y+ N+L+ +Y+ + A +FDE P
Sbjct: 134 RVFFLANSLHSQAFKFGFMSDLYVVNSLIHVYSVSDRLCDAYQVFDESPR 183
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNV-MPP 63
L++ K+ Q+ A + L H + ISR I L L +R LF+ + P
Sbjct: 15 LLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPN 74
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVH 122
LF +NT+IR Y+++ E+I L+ M+ G+ P +N T+PF++ + + + G VH
Sbjct: 75 LFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVH 134
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
S I K G SD ++ N L+ +Y+ ++ A+ LFDE
Sbjct: 135 SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDE 171
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKT 77
H++ + +K + + ++ + I L S+ +L+ R+LF+ +++ L +YNT+I+ YA+
Sbjct: 131 HEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEV 190
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK--VGLHSDKY 135
+ ++ LF EM +G+ PD T+ + VG +H+ ++K + S+
Sbjct: 191 NQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNIL 250
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++ MYA C I+ A+ +F M
Sbjct: 251 LKSAIVDMYAKCGLINIAERVFSTM 275
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
++ R LFN++ + ++ +I Y++ E+++LF EM G++PD +T V+ A
Sbjct: 297 INVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSA 356
Query: 109 SDQCLLIGVGGSVHSLIFKVGL-HSDKYIGNTLLRMYAACKEIDFAKALF 157
+ +G ++ + G+ + + + ++ MYA C ID A +F
Sbjct: 357 CARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIF 406
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 45 SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
S+ +L R + N M F +N++I A+ +I +F E++ TGL+PD +T+
Sbjct: 398 SIDSALEIFRRVGKN-MKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 456
Query: 105 VVKASDQCLLIGVGGSVHSLIFKV 128
V+ A LI G + +F
Sbjct: 457 VLCACGHSGLIEEGKKLFESMFNA 480
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
++ A +KT L H+T SR + S +++ LF + P L+ +NT+IR +++
Sbjct: 42 QKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSR 101
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+S +I LF +ML + + P LTYP V KA Q G +H + K+GL D++I
Sbjct: 102 SSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFI 161
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
NT++ MYA + A+ +FDE+
Sbjct: 162 QNTIIYMYANSGLLSEARRVFDEL 185
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Query: 10 IQLSKTAHHHHQLPALFLKT-SLDHNTYIISRFILTSLPI--SLHFTRSLFNNVMPP-LF 65
+Q T +QL AL +KT SL+H + L + P +L + SLF+ + P L
Sbjct: 22 LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI+ Y + S ++I LF ++L PD+ T P V+K + + G +H L+
Sbjct: 82 SWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLGALQEGKQIHGLV 140
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G DK++ ++L+ MY+ C EI+ + +FD M +
Sbjct: 141 LKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMED 177
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ LF+ MP L +N++I Y + +++KLF+ ML+ + P+ T V A+
Sbjct: 261 AKELFDQ-MPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAAS 319
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G G VHS I K G +D +G L+ MY+ C + A +F +P+
Sbjct: 320 GMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPK 371
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ + +F+ + P LF +N +IR ++ + ++ + + + GL PDNLT+PF+VK+
Sbjct: 17 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 76
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM-YAACKEIDFAKALFDEMPE 162
+ I +G H I K G D Y+ N+L+ M + C +++ A+ LFD+MPE
Sbjct: 77 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPE 131
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 33/157 (21%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI--SLHFTRSLFNNVMPP--LF 65
I + AH H +K + + Y+ + + + R LF+ MP L
Sbjct: 83 ISMGSQAHGH------IIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQ-MPEKNLV 135
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++T+I YA+ + ++++LF + G+R + ++
Sbjct: 136 TWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETV----------------------MV 173
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G+ + +G L+ MYA C ID A +F+++PE
Sbjct: 174 IKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPE 210
>gi|359490432|ref|XP_002267810.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 499
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI------SLHFTR- 54
+ ++I L+Q T + Q+ A L TSL H+ I S+F+ S SL F++
Sbjct: 5 LEQRIPYLLQQC-TFNQLKQIHAFILTTSLLHDIQISSKFLRRSTEFGAMEYPSLVFSQL 63
Query: 55 -SLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
+FN + +N +IR YA I +FDEML+ GL+P+N TYP+V+ + +
Sbjct: 64 GGVFNT---DIMIWNGMIRGYAYNGPVDRCISMFDEMLQRGLKPNNFTYPYVLSSCSEMG 120
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
G G VH+ I K G S+ + ++LL MY
Sbjct: 121 CFGRGRKVHAQIMKSGFESNFIVADSLLNMY 151
>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Brachypodium distachyon]
Length = 622
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIR 72
+ AH H L L S H +++ L S P + + ++F + P F YNTL+R
Sbjct: 59 RKAHARHV--KLGLDRSPRHARPLLAACALGSWPGGMEYAAAIFAALDEPEAFDYNTLMR 116
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-H 131
+ +++L+ ML+ G+ PD T+PFV+KA + G G +H + K+G
Sbjct: 117 GHVAHDDPAAALRLYAAMLEQGVEPDRYTFPFVLKACARLAASGQGRQLHGHVAKLGFSQ 176
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEM 160
D+++GN+L+ Y C E + A+ F++M
Sbjct: 177 HDEHVGNSLISFYGRCGEPELARRAFEQM 205
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGL 130
Y + + + F M + G RP+ + +V A C +G VG S+H + + +
Sbjct: 223 YTRAGLWADCLDSFGAMARAGGRPEESS---MVSALSACAHLGAYDVGRSIHCALLRNTV 279
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++ +L+ MYA C ID A A+FD M
Sbjct: 280 ALNTFMETSLVDMYAKCGCIDKASAVFDAM 309
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFA 66
L+ L KT + + A + + + +I +R I S L R +F+N+ P +F
Sbjct: 26 LLNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFC 85
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
N +I+ YA E++K+ D M G+ P+ TYPFV+KA G +H
Sbjct: 86 CNVVIKVYANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHEHAV 145
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K G+ D ++GN L+ YA C++++ ++ +FDE+P
Sbjct: 146 KCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIP 180
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ + S+F + P F +NT+IR Y ++ L+ EML+ G+ DN TYP + K
Sbjct: 34 SMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFK 93
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A I G +H IFK GL D ++ N+L+ MY C +I+ + ++F+ M
Sbjct: 94 ACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHM 146
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+Y+ +I A +E++++F +ML+ GL+PD++ Y V+ A + L+ G
Sbjct: 254 LSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEG 307
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP 62
+ + LI+ Q+ A + +SL + +II++ I + L + L + +FN
Sbjct: 7 KSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQE 66
Query: 63 PL-FAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F YN +IRAY+ + +I ++++M + D TYPFV KA + G
Sbjct: 67 PDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKE 126
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
VH +I ++G D ++ ++LL Y C EI A+ +FDE
Sbjct: 127 VHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDE 165
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ + +N+LI Y + E I+L EM + L+PD T V+ A Q
Sbjct: 263 RKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQM 322
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G VH K G+ D +IG L+ MYA C I A+ +FD+M E
Sbjct: 323 GAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKVFDQMNE 371
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N LI YA+ ++S +F EM++ +RP+ T ++ A + + +G ++H +
Sbjct: 174 WNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYM 233
Query: 126 FK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + L + L+ +Y C +D A+ LFDE+PE
Sbjct: 234 MKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPE 271
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N ++ YA + +I+LF EM ++G RPD++T+ V+ A L+ G L+
Sbjct: 377 WNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLML 436
Query: 127 K 127
+
Sbjct: 437 Q 437
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N +IR Y E+I + M G+R DN T+PFV+KA + L + VG VH
Sbjct: 90 FIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGK 149
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K+G D Y+ N L+ MY I+ A+ +FDEMP
Sbjct: 150 LIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMP 186
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L +FN + + ++NT++ AY + E++K+F +L L+PD +T V+
Sbjct: 361 ELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLP 420
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G +HS I K+GL S+ +I N ++ MYA C ++ A+ FD M
Sbjct: 421 AVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGM 473
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 26 FLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIE 82
+K D + Y+ + I L I + +F+ MP L ++N+++ Y +
Sbjct: 150 LIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDE-MPVRDLVSWNSMVSGYQIDGDGLS 208
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKAS--DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
S+ F EML+ G + D + A + CL G+ +H + + L D + +L
Sbjct: 209 SLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGM--EIHCQVIRSELELDIMVQTSL 266
Query: 141 LRMYAACKEIDFAKALFDEM 160
+ MY C ++D+A+ +F+ +
Sbjct: 267 IDMYGKCGKVDYAERVFNRI 286
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTS 78
Q+ + +K L NT+I + + + + L R F+ V + ++NT+I AYA
Sbjct: 433 QIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHG 492
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG-GSVHSLIFKVGLHSDKYIG 137
SI+ F EM G +P+ T+ ++ A LI G G +S+ + G+
Sbjct: 493 FGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHY 552
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
+L + +D AK +EMP
Sbjct: 553 GCMLDLLGRNGNLDEAKCFIEEMP 576
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 8/150 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLF-----NNVMPPLFAYNTLIRAY 74
Q+ LK L +N ++++F ++SL + + S + + F +NTLIRAY
Sbjct: 47 QIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAY 106
Query: 75 AKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
A+T S + ++ L+ ML + P+ TYPFV+KA ++ +G +VH + K G D
Sbjct: 107 AQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCD 166
Query: 134 KYIGNTLLRMYAACK-EIDFAKALFDEMPE 162
++ NT++ MY+ C I+ A+ +FDEMP+
Sbjct: 167 IHVQNTMVHMYSCCAGGINSARKVFDEMPK 196
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I YA+ S E++ LF EM + PD +T ++ A + +G + + I
Sbjct: 202 WSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIE 261
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +H + N L+ M+A C +I A LF M E
Sbjct: 262 RHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNE 297
>gi|297745258|emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 19 HHQLPALFLKTSLDHN-TYIISRFILTSLPISLHFTRSLFNNVMPP---LFAYNTLIRAY 74
H QL L L H+ T+IIS ++ + P S+ + P +F +N LIR
Sbjct: 49 HQQL----LVQGLPHDPTHIISMYLTFNSPAK---ALSVLRRLHPSSHTVFWWNQLIRRS 101
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ ++L+ M + G RPD+ T+PFV+KA + G SVH+++F G +
Sbjct: 102 VHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNV 161
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GN L+ MY C + A+ +FDEM E
Sbjct: 162 FVGNGLVSMYGRCGAWENARQVFDEMRE 189
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
L ++N+++ AY + SI ++K+F+ M + G+RPD ++ V+ A G VH
Sbjct: 195 LVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVH 254
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL D ++GN ++ MYA C ++ A +F+ M
Sbjct: 255 GYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+N++ P F +N LI +Y + +++ + +M+K G+RPDN TYP V+KA + L +G
Sbjct: 235 SNILHP-FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGF 293
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH I + + N L+ MY C ++ A+ LFD++PE
Sbjct: 294 GKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPE 338
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+ Y +T +++L +M K G D++ + A +G +HS
Sbjct: 379 WNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 438
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + N+L+ MY+ CK++ A LF M
Sbjct: 439 RSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLM 472
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+N++ P F +N LI +Y + +++ + +M+K G+RPDN TYP V+KA + L +G
Sbjct: 161 SNILHP-FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGF 219
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH I + + N L+ MY C ++ A+ LFD++PE
Sbjct: 220 GKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPE 264
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+ Y +T +++L +M K G D++ + A +G +HS
Sbjct: 305 WNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 364
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + N L+ MY+ CK++ A LF M
Sbjct: 365 RSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLM 398
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTS---------LPISLHFTRSLFNNV-MPPLFAYNTL 70
Q+ AL + L N + + +LT+ + + +F + P F +NT
Sbjct: 19 QIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWNTY 78
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
IR +++ + ++ L+ +M + ++PDN T+PFV+KA + + G +VH + ++G
Sbjct: 79 IRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGF 138
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDE 159
S+ + NTLL +A C ++ A +FD+
Sbjct: 139 GSNVVVRNTLLVFHAKCGDLKVATDIFDD 167
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ M + ++N LI Y + + E+++LFDEM G PD +T ++ A
Sbjct: 224 RRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADL 283
Query: 113 LLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALF 157
+ G VH+ I ++ +GN L+ MYA C I A +F
Sbjct: 284 GDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVF 329
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMPP---LFAY 67
LS+ QL A L + L + + +R + L R LF+ MP +F +
Sbjct: 75 LSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDE-MPNQGNVFLW 133
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
N LIRAYA+ +I+L+ EML G + PDN TYP V+KA L +G G VH +
Sbjct: 134 NVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVM 193
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ +D ++ L+ MYA C +D A A+FD
Sbjct: 194 RTSWAADVFVCAGLIDMYAKCGCVDEAWAVFD 225
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G +H+ + GL D + L+ +YA+C + A+ LFDEMP
Sbjct: 82 GRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMP 125
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG----LRPDNLTYPFVVKASDQCLLIGV 117
P F YNTLIR A T+ +++ L+ ML+ G +RPD LT+PFV++A C +G
Sbjct: 41 PDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRA---CTAMGA 97
Query: 118 GGS---VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G + VH+ + K G SD ++ N L+ M+A+C + A ALFD
Sbjct: 98 GDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFD 141
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ V + ++N +I Y + + +++LF++M + G +PD +T ++ A
Sbjct: 195 MALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSA 254
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKY--------IGNTLLRMYAACKEIDFAKALFDEM 160
+ VG +HS + SD + +GN L+ MYA C + A +F M
Sbjct: 255 CADSGDLDVGQRLHSSL------SDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSM 308
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLP--ISLHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
Q+ A +KT++ + ++F+ L + P L + + +FN + P F +N +IRAY+
Sbjct: 6 QIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSN 65
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ + + +ML + + ++ T+PF+++A L +G VH L+ K+G SD +
Sbjct: 66 SDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFA 125
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N LL +YA C EI A+ LFD +PE
Sbjct: 126 LNALLHVYALCGEIHCARQLFDNIPE 151
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG----LRPDNLTYPFVVKASDQCLLIGV 117
P F YNTLIR A T+ +++ L+ ML+ G +RPD LT+PFV++A C +G
Sbjct: 71 PDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRA---CTAMGA 127
Query: 118 GGS---VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G + VH+ + K G SD ++ N L+ M+A+C + A ALFD
Sbjct: 128 GDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFD 171
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ V + ++N +I Y + + +++LF++M + G +PD +T ++ A
Sbjct: 225 MALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSA 284
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKY--------IGNTLLRMYAACKEIDFAKALFDEM 160
+ VG +HS + SD + +GN L+ MYA C + A +F M
Sbjct: 285 CADSGDLDVGQRLHSSL------SDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSM 338
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNV-MPPLFAYNTLI 71
T +H HQ+ +KT L N +R + S ++++ LF + P L+++NT+I
Sbjct: 40 TINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTII 99
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
RA++++S +I LF +ML + ++P LTYP V KA Q G +H + K+GL
Sbjct: 100 RAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQ 159
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFD 158
+D++I NT++ MYA + A+ +FD
Sbjct: 160 NDQFICNTIIYMYANGGLMSEARRVFD 186
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 32 DHNTYIISRFILTSLPIS-LHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDE 89
DH+ I+ I+ + +R+LF++++ ++N++I Y + +E+++LF++
Sbjct: 194 DHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNK 253
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M G T ++ A + G VH I + + + ++ MY C
Sbjct: 254 MQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGS 313
Query: 150 IDFAKALFDEMP 161
++ A +F+ P
Sbjct: 314 VENAVEVFETCP 325
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL----PISLHFTRSLFNNVM 61
I + + +K+ Q A LKT L H+T+ S+ + + P ++ + S+ N +
Sbjct: 12 ILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIE 71
Query: 62 PPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F +N++IRAYA +S ++ +F EML + PD ++ FV+KA G
Sbjct: 72 SPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQ 131
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H L K L +D ++ NTL+ +Y + A+ + D MP
Sbjct: 132 IHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMP 172
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASD 110
R +F++ MP + ++N ++ AYA C E +++F+ ML + RPD T V+ A
Sbjct: 227 REVFDS-MPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACA 285
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ G VH I K G+ + ++ L+ MY+ C +ID A +F
Sbjct: 286 SLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVF 332
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG----LRPDNLTYPFVVKASDQCLLIGV 117
P F YNTLIR A T+ +++ L+ ML+ G +RPD LT+PFV++A C +G
Sbjct: 41 PDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRA---CTAMGA 97
Query: 118 GGS---VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G + VH+ + K G SD ++ N L+ M+A+C + A ALFD
Sbjct: 98 GDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFD 141
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ V + ++N +I Y + + +++LF++M + G +PD +T ++ A
Sbjct: 195 MALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSA 254
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKY--------IGNTLLRMYAACKEIDFAKALFDEM 160
+ VG +HS + SD + +GN L+ MYA C + A +F M
Sbjct: 255 CADSGDLDVGQRLHSSL------SDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSM 308
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG----LRPDNLTYPFVVKASDQCLLIGV 117
P F YNTLIR A T+ +++ L+ ML+ G +RPD LT+PFV++A C +G
Sbjct: 41 PDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRA---CTAMGA 97
Query: 118 GGS---VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G + VH+ + K G SD ++ N L+ M+A+C + A ALFD
Sbjct: 98 GDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFD 141
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ V + ++N +I Y + + +++LF++M + G +PD +T ++ A
Sbjct: 195 MALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSA 254
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKY--------IGNTLLRMYAACKEIDFAKALFDEM 160
+ VG +HS + SD + +GN L+ MYA C + A +F M
Sbjct: 255 CADSGDLDVGQRLHSSL------SDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSM 308
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F RSL NV+ +N +IR+Y + +E++ +F ML PD+ T+P V+KA
Sbjct: 94 FDRSLEKNVV----FFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ VG VH I KVGL ++ +IGN L+ MY C + A+ + D+MP
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMP 199
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y S E++ LF +M + G++PD +T ++ A + +G +H
Sbjct: 271 LISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHK 330
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K L + + N LL MYA C ++ A+ +FD+M
Sbjct: 331 YIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKM 367
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F RSL NV+ +N +IR+Y + +E++ +F ML PD+ T+P V+KA
Sbjct: 94 FDRSLEKNVV----FFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ VG VH I KVGL ++ +IGN L+ MY C + A+ + D+MP
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMP 199
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y S E++ LF +M + G++PD +T ++ A + +G +H
Sbjct: 271 LISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHK 330
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K L + + N LL MYA C ++ A+ +FD+M
Sbjct: 331 YIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKM 367
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 7 ETLIQLSKTAHHHH--QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MP 62
E L+ L K ++ Q+ ++ L ++ ++ + I L+S + + +F+ + P
Sbjct: 27 EALVLLQKCSNFKQLKQVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAP 86
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F +N +IRA+ ++ LF ML G PD TYPFV+ A + +G H
Sbjct: 87 DVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAH 146
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+L K+G D Y+ NT++ +Y C+ +D + +FD+M
Sbjct: 147 ALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKM 184
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVV 106
L R LF MP + ++ +I Y K IE+ LF+ M + +RP+ T +V
Sbjct: 205 LDTARELFEQ-MPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLV 263
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+A + + +G VH K G + ++G L+ MY+ C +D A+ +FD M
Sbjct: 264 RACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMM 317
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-M 61
+ + ++ KT Q+ +L + TS+ N SR F S + + R++F+ +
Sbjct: 8 VMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQ 67
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
++ +N++I+ Y ++ +++EM + G PD+ T+PFV+K L+ G SV
Sbjct: 68 RTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSV 127
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ I K G D Y + LL MY +C +++ +F+ +P+
Sbjct: 128 HNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPK 168
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R+LF+ MP L +N++I AY++ E+++LF +M G P+ T+ V+ A
Sbjct: 267 ARNLFDK-MPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACT 325
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S+H+ + H IG L+ MYA + D A +F ++
Sbjct: 326 HMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKL 375
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+ +LI + E+++LF +M G+ P+ +T + A+ +C I G VH
Sbjct: 171 VVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHD 230
Query: 124 LIFKVGLHS-------DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++G + + ++ MYA C ++ A+ LFD+MP+
Sbjct: 231 RLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQ 276
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
++ A +K SL +++++++ + + + + LF V P F YN +IRAY
Sbjct: 32 KIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNK 91
Query: 79 CSIESIKLFDEML-----KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ +I ++ +ML + + PD T+PFVVK+ + +G VH +FK G S+
Sbjct: 92 VYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSN 151
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+L+ MY C +D A +F+EM E
Sbjct: 152 TVVENSLVEMYVKCDSLDDAHKVFEEMTE 180
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-L 64
+E ++ H + + ++ NT I L + R++F + +
Sbjct: 159 VEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQM----RRARAIFEEMQDKTI 214
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F++ ++ YA+ C ++++ F M G+ PD ++ V+ A Q + +G +H
Sbjct: 215 FSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFY 274
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + + N L+ MYA C ID + LFD+M E
Sbjct: 275 ADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNE 312
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 7/160 (4%)
Query: 7 ETLIQL---SKTAHHHHQLPALFLKTSLDHNTYIISRFIL-TSLPISLHFTRSLFNNV-M 61
+TL+ L T +H Q+ A T +HN + + I+ ++ ++++ ++F+ +
Sbjct: 13 QTLMNLFNHCSTLNHLKQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPK 72
Query: 62 PPLFAYNTLIRAYAK-TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F +NT+IR + T+ S +I F M + RPDN T+ F++K + + +G
Sbjct: 73 PDSFLWNTMIRGFGNSTTHSHNAIHFFKRM-QLAHRPDNFTFSFILKIIARLRFVNLGKQ 131
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H +FK G + Y+ N+L+ MY K+I+ A LF+EM
Sbjct: 132 LHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEM 171
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLH-FTRSLFN 58
+ QI T + K Q+ A L LD + Y++++ I LT L I + + S+FN
Sbjct: 45 LESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFN 104
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
V P F YN LIR Y ES + + M K G+ P + T+ + KA + +G+
Sbjct: 105 QVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGL 164
Query: 118 GGSVHS-LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G +H I G D ++GN+++ MY C ++ + +FDEMP
Sbjct: 165 GRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP 209
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 39/64 (60%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+++Y+++I +A +++KLFDEM+KT ++P+ +T+ V+ A ++ G +
Sbjct: 347 VYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFE 406
Query: 124 LIFK 127
L+ K
Sbjct: 407 LMEK 410
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 22/172 (12%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
I + +++L K H +K SL +++++++ + + H+ + + N++
Sbjct: 65 ILKDCPNIVELKKIHAH-------IVKFSLSQSSFLVTKMV----DVCNHYGETEYANLL 113
Query: 62 ------PPLFAYNTLIRAYAKTSCSIESIKLFDEML-----KTGLRPDNLTYPFVVKASD 110
P F YN +IRAY + +I ++ +ML + + PD T+PFVVK+
Sbjct: 114 FKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCA 173
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH +FK G S+ + N+L+ MY C +D A +F+EM E
Sbjct: 174 GLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTE 225
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F++ ++ YA+ C ++++ F M G+ PD ++ V+ Q + +G +H
Sbjct: 230 IFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHI 289
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + + N L+ MYA C ID + LFD+M E
Sbjct: 290 YADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKE 328
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 62 PP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
PP ++ +N+LIR+Y C+ + + LF M PDN T+PFV KA + +
Sbjct: 86 PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRC 145
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S H+L G S+ ++GN L+ MY+ C+ + A+ +FDEM
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAY 67
++ ++AH AL L T N ++ + + + S SL R +F+ + + + ++
Sbjct: 143 VRCGESAH------ALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSW 196
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIG---VGGSVHS 123
N++I +YAK ++++F M G RPDN+T +V C +G +G +H
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNIT---LVNVLPPCASLGTHSLGKQLHC 253
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++GN L+ MYA C +D A +F M
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNM 290
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHS 123
++ I YA+ E++ + +ML +G++P+ +T V+ C +G G +H
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG---CASVGALMHGKEIHC 389
Query: 124 LIFKV-------GLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + + N L+ MYA CK++D A+A+FD +
Sbjct: 390 YAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 53 TRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL--RPDNLTYPFVVK 107
R++F+++ P + + +I Y++ + ++++L EM + RP+ T +
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G +H+ + ++ ++ N L+ MYA C I A+ +FD M
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM 539
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MPPLFA 66
LI S + H Q+ + ++ ++ ++++FI + + S+ + S+F + +
Sbjct: 48 LIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYL 107
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N LIR A+ S SI F MLK + PD LT+PFV+K++ GVG ++H I
Sbjct: 108 FNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGIL 167
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL D ++ +L+ MY +E+ A +FDE PE
Sbjct: 168 KFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPE 203
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV- 117
MP + ++ T++ +++ ++++ F ML+ G RP++ T +V A C IG
Sbjct: 267 MPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYT---IVSALSACAKIGAL 323
Query: 118 --GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ + G + IG L+ MYA C I+ A+ +F E E
Sbjct: 324 DAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKE 370
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MPP 63
I+ I L + H H Q+ L T + + + + +S+ + L + LF+ + P
Sbjct: 43 IDQCISLKQLKHVHAQIILHGLATQV----LTLGKLVSSSVQLRDLRYAHKLFDQIPQPN 98
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK--ASDQCLLIGVGGSV 121
F +N LI+ Y+ +S I+S+ L+ M+ G+ P+ T PFV+K A+ C +GV V
Sbjct: 99 KFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGV--CV 156
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ FK+G+ S + N +L +Y AC I A+ +FD++ E
Sbjct: 157 HAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISE 197
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+++ L ++N++I Y+K S E++ +F EM + GL PD T ++ S +
Sbjct: 188 ARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTK 247
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G VH + G+ D + N L+ MYA C + AK++FD+M
Sbjct: 248 HGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQM 296
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 57 FNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
F N MP + ++N++I + + E++ LF M +G+ ++ T ++ +
Sbjct: 323 FFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGD 382
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G HS IF + + N ++ MYA C + A +F MPE
Sbjct: 383 LALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPE 430
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 26 FLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESI 84
FL SL H Y R +L + R++F+ + + ++ +LI YA+ +E+I
Sbjct: 87 FLDNSLIH-MYCKCRSVLDA--------RNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAI 137
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
L MLK +P+ T+ ++KA+ G G +H+L K G H D Y+G+ LL MY
Sbjct: 138 GLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMY 197
Query: 145 AACKEIDFAKALFDEM 160
A C ++D A A+FD++
Sbjct: 198 ARCGKMDMATAVFDKL 213
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +A+ ++ F EML+ G + TY V + + + G VH+ +
Sbjct: 220 SWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHV 279
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K ++GNTLL MYA + A+ +FD +
Sbjct: 280 IKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRV 314
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPPLFA-YNTLI 71
KT+ HQ+ A + +N YI + + + + + R LF+ + P A +N++
Sbjct: 112 KTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMF 171
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
R YA++ E + LF +M +RP+ T+P V+K+ + + G VH + K G
Sbjct: 172 RGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFR 231
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++G TL+ MY+A + A +F EM E
Sbjct: 232 GNPFVGTTLIDMYSAGGTVGDAYKIFCEMFE 262
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++N LI YA E + F ML ++ + P++ T V+ A + + +G VH
Sbjct: 358 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 417
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
GL + Y+GN L+ MYA C I+ A ++F M
Sbjct: 418 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 455
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 15/153 (9%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------PPLFAYNTLIRAY 74
++ A +K SL +++++++ + + H+ + + N++ P F YN +IRAY
Sbjct: 32 KIHAHIVKFSLSQSSFLVTKMV----DVCNHYGETEYANLLFKGVADPNAFLYNAMIRAY 87
Query: 75 AKTSCSIESIKLFDEML-----KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+ +I ++ +ML + + PD T+PFVVK+ + +G VH +FK G
Sbjct: 88 KHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFG 147
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S+ + N+L+ MY C +D A +F+EM E
Sbjct: 148 QKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTE 180
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-L 64
+E ++ H + + ++ NT I L + R++F + +
Sbjct: 159 VEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQM----RRARAIFEEMQDKTI 214
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F++ ++ YA+ C ++++ F M G+ PD ++ V+ Q + +G +H
Sbjct: 215 FSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIY 274
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + + N L+ MYA C ID + LFD+M E
Sbjct: 275 ADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKE 312
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 18/168 (10%)
Query: 9 LIQLSKTAHHHHQLPALFLKT-SLDHNT--YIISR---FILTSLPISLHFTRSLFNNVMP 62
+IQ K + Q+ AL L + +LD ++ISR F S SL + +F+ +
Sbjct: 4 MIQHCKNINQLKQIHALILTSPNLDQKDHYFLISRLLFFAALSDSGSLAYAADIFHYIKK 63
Query: 63 P-LFAYNTLIRAYAKTS---------CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
P L YN +IRAYA S C +++ L+ +ML + PD LT+PF++K +
Sbjct: 64 PNLPFYNIMIRAYASKSNVDYDDARLC--QALILYKQMLCNDISPDCLTFPFLLKECTRN 121
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ I G +H K+GL+SD ++ N+L+ Y+AC+ + ++ LFDEM
Sbjct: 122 VAIYGGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKLFDEM 169
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEM--- 90
N+ II L SL+ R + + + +N++I + + E+++ F EM
Sbjct: 178 NSMIIGYLRSGDLDQSLNLFRKM--KINRNVITWNSIITGFVQGGRPKEALEFFHEMQCL 235
Query: 91 -----LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
+ +RPD +T V+ A I G VHS + + GL D IG L+ MY
Sbjct: 236 RDDDGINNKVRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYG 295
Query: 146 ACKEIDFAKALFDEMPE 162
C + A +F EM E
Sbjct: 296 KCGCLQRAYEVFREMSE 312
>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Query: 3 SRQIETLIQL---SKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN 58
S Q+ L+QL SK H QL + LDH+ +++++ + + + L ++LF+
Sbjct: 23 SFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFD 82
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ P +FA+ ++ Y++ S E ++ + EM G+ PD +P V +A Q L + V
Sbjct: 83 KLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEV 142
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH + G D + N+L+ MY+ ++ + +FDEM E
Sbjct: 143 GIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVE 187
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I + +++ F +M ++G+ + +T V+ A D + G VH+ I
Sbjct: 363 WNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPACD----LKSGKQVHAYIT 418
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K S + N L+ MY+ C I A ++F M
Sbjct: 419 KNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNM 452
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ + R LF + P + +N++ R Y++ + +E LF E+L+ G+ PDN T+P ++K
Sbjct: 78 SMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLK 137
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + G +H L K+GL + Y+ TL+ MY C+++D A+ +FD + E
Sbjct: 138 ACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVE 192
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNT 69
++K QL L +K LD N Y+ I + + + R +F+ ++ P + YN
Sbjct: 141 VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNA 200
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIF 126
+I YA+ + E++ LF EM L+P+ +T V+ + C L+G +G +H
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSS---CALLGSLDLGKWIHKYAK 257
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + L+ M+A C +D A ++F++M
Sbjct: 258 KHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKM 291
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 62/99 (62%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +NTL+R A++ ++I + + + G++PDNLT+PFV+KA + G +
Sbjct: 903 PTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQM 962
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H+ + K+G D ++ N+L+ +YAAC + A+++F+EM
Sbjct: 963 HNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEM 1001
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 55/99 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +++++I AY++ S +S++LF +M + ++PD + V+ A + +G +H
Sbjct: 1138 LISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHD 1197
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +D + N+L+ M+A C + A +F +M E
Sbjct: 1198 YVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEE 1236
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ + R LF+ MP + ++ LI Y + E++ L M+ G+ P +T V+
Sbjct: 561 VEYARLLFDQ-MPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIP 619
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A I +G ++ K G+ SD +GN+L+ +YA + + +FDEM
Sbjct: 620 AISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEM 672
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHS 123
+ ++AY+ +E++ LF + + L D + FV+KA C +G G +H+
Sbjct: 448 WRAFLKAYSHGPFPLEALHLF-KHARQHLADDTFVFTFVLKA---CAGLGWHRAGAQLHA 503
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ + G Y+ L+ +Y + + A+ +FDEMP
Sbjct: 504 LVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMP 541
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L RS+FN ++ + ++N+LI Y++ + E + LF M ++ D +T +VK
Sbjct: 990 ALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVT---MVK 1046
Query: 108 ASDQCLLIGVGGSVHSLIFKVG---LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
C +G ++ + + D Y+GNTL+ Y ++ A+ +F +M +
Sbjct: 1047 VISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKD 1104
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L ++ ++I +A S+E+++LF EM + G++P+ +T+ V+ A L+ G
Sbjct: 678 LVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQG 732
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNT-YIISRFILTSLPISLHFTRSLFNNVM 61
+R + L++ + H +QL A + +D T I++ + + + R LF+ +
Sbjct: 12 ARHVRELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIP 71
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F YN+LIRAY + C E++ L M++ G+ P+ T PF++KA +
Sbjct: 72 DPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMV 131
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H ++ K+G ++GN LL YA+ + ++ FDEM
Sbjct: 132 THGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM 171
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I Y + E++ L++ M GL PD T V+ A Q + G +H
Sbjct: 308 IISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHD 367
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I + + N+LL MYA C ++D A +LF EMP
Sbjct: 368 CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP 405
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL +R F+ ++ + ++N++I YA+ + E+ LF+ M + GL D T ++
Sbjct: 160 SLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLF 219
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + G VHS + G D + N L+ MY C ++ A FD MP
Sbjct: 220 ACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMP 273
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNT-YIISRFILTSLPISLHFTRSLFNNVM 61
+R + L++ + H +QL A + +D T I++ + + + R LF+ +
Sbjct: 12 ARHVRELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIP 71
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F YN+LIRAY + C E++ L M++ G+ P+ T PF++KA +
Sbjct: 72 DPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMV 131
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H ++ K+G ++GN LL YA+ + ++ FDEM
Sbjct: 132 THGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM 171
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I Y + E++ L++ M GL PD T V+ A Q + G +H
Sbjct: 308 IISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHD 367
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I + + N+LL MYA C ++D A +LF EMP
Sbjct: 368 CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP 405
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL +R F+ ++ + ++N++I YA+ + E+ LF+ M + GL D T ++
Sbjct: 160 SLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLF 219
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + G VHS + G D + N L+ MY C ++ A FD MP
Sbjct: 220 ACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMP 273
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS---LPISLHFTRSLFNNV 60
+Q +L Q Q+ A + + ++Y + I S +P ++ + LF+ V
Sbjct: 14 QQPSSLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLFDQV 73
Query: 61 MPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P +F +NT++R +++ I+++ L+ +M G++PD T+ F++KA + +G
Sbjct: 74 AEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKACTRLEWRNMGF 133
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+H K G + ++ NTL+ +A C ++ A+ +FD+
Sbjct: 134 CIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDD 173
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LFN V + +N +I + + +++++F+EM+ G +PD +T ++ A
Sbjct: 229 ARKLFNEVPRRDVVTWNAMIAGFVHCGENEQALEMFEEMISVGEQPDEVTMLSLLSACTD 288
Query: 112 CLLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VG VHS I ++ L +GN L MYA C I+ A +F M E
Sbjct: 289 LGDLEVGKKVHSSILEMSLGDLSVLLGNALTYMYAKCGSIERALEVFRGMRE 340
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 55 SLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
S+FN + P +N++IRAYA+ + ++ + M G D T+PFV+K+S + L
Sbjct: 126 SVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELL 185
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G VH LI ++GL D Y+ +L+ +Y C EI+ A +FD M
Sbjct: 186 SVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNM 232
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK--TGLRPDNLTYPFVVKAS 109
F R + N++ ++ T+I Y+++ + +++ LFDEM+K +G+RP+ +T V+ A
Sbjct: 260 FERMPWRNIV----SWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPAC 315
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q + G +H L ++GL+S+ + L MYA C + A+ FD++
Sbjct: 316 AQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 366
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L A+NT+I AYA ++++ F EM++ G++PD++T+ ++ L+ VG
Sbjct: 373 LIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 427
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 12 LSKTAHHHHQLP---ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MPPLFA 66
L +A H QL A L L + ++I++ I S + F R +F+++ P +F
Sbjct: 27 LIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFP 86
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IR Y++ + +++ ++ M + PD+ T+P ++KA + +G VH+ +F
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
++G +D ++ N L+ +YA C+ + A+ +F+ +P
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+ + P L +N +I YAK + E+I +F EM+ +RPD ++ + A Q
Sbjct: 279 LFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGS 338
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ S++ + + D +I + L+ M+A C ++ A+ +FD
Sbjct: 339 LEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD 382
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 54 RSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R++F + P + ++ ++ AYA+ +E++++F +M K ++PD + V+ A
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFT 233
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G S+H+ + K+GL + + +L MYA C ++ AK LFD+M
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM 283
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ + R LF + P + +N++ R Y++ + +E LF E+L+ G+ PDN T+P ++K
Sbjct: 78 SMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLK 137
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + G +H L K+GL + Y+ TL+ MY C+++D A+ +FD + E
Sbjct: 138 ACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVE 192
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNT 69
++K QL L +K LD N Y+ I + + + R +F+ ++ P + YN
Sbjct: 141 VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNA 200
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIF 126
+I YA+ + E++ LF EM L+P+ +T V+ + C L+G +G +H
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSS---CALLGSLDLGKWIHKYAK 257
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + L+ M+A C +D A ++F++M
Sbjct: 258 KHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKM 291
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 33 HNTYIISRFI-LTSLPISLHFTRSLFNNVM---------PPLFAYNTLIRAYAKTSCSIE 82
H + ++R I L S LH R+LF++ P F NT++RAYA S E
Sbjct: 56 HTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYE 115
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+I L+ M + G+ +N TYPFV+K L G VH + + G SD ++ L+
Sbjct: 116 AIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVD 175
Query: 143 MYAACKEIDFAKALFDEM 160
MYA C EI A +FD M
Sbjct: 176 MYAKCGEIGDAHEVFDRM 193
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNVM-PP 63
++++ T Q+ L L ++ ++ +F+ + + P +LH++ + +N P
Sbjct: 14 SMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPT 73
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSV 121
LF +N++IRA++K+S S + +L + L PDN T+ F+V+ S Q L G G SV
Sbjct: 74 LFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSV 133
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H K G D ++ + L+ MYA +D +F + E
Sbjct: 134 HGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICE 174
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 52 FTRSLFNNV--MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
F R LF+ + P+ A+N +I Y + S E++ LF+ M + G++ + ++ V+ A
Sbjct: 195 FARKLFDKMSHKDPI-AWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSAC 253
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G H+ I + L +G L+ MYA C ++ A +F M E
Sbjct: 254 SHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKE 306
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 33 HNTYIISRFI-LTSLPISLHFTRSLFNNVM---------PPLFAYNTLIRAYAKTSCSIE 82
H + ++R I L S LH R+LF++ P F NT++RAYA S E
Sbjct: 56 HTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYE 115
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+I L+ M + G+ +N TYPFV+K L G VH + + G SD ++ L+
Sbjct: 116 AIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVD 175
Query: 143 MYAACKEIDFAKALFDEM 160
MYA C EI A +FD M
Sbjct: 176 MYAKCGEIGDAHEVFDRM 193
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F R L +V+ + +I Y + ++++ LF +M + G D +T V A Q
Sbjct: 190 FDRMLIRDVV----CWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQ 245
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ SVH G D +GN+++ MYA C ++ A+ +FD M E
Sbjct: 246 LGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEE 296
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEML--KTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
F +NT+IRAY++T +++ LF ML T RPD TYPF++K+ + VG +H
Sbjct: 60 FFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLH 119
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
LI+K GL SD+Y+ N L+ MY++C + A +F +M
Sbjct: 120 GLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKM 157
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTS 78
QL L K+ L+ + Y+ + I +S S + + ++ ++I +
Sbjct: 117 QLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDD 176
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI--FKVGLHSDKYI 136
++E+I+LF+EM++ G+ P+ T V++A +G+G V +I K+GL ++ +
Sbjct: 177 RALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEAN--V 234
Query: 137 GNTLLRMYAACKEIDFAKALFD 158
L+ MYA C I A+ +FD
Sbjct: 235 RTALIDMYAKCGSIGSARKVFD 256
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ ++ +FA+ +I A E++ LFD+M GLRPD T V+
Sbjct: 247 SIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLS 306
Query: 108 ASDQCLLIGVG-GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A G +S+ K G+ ++ + A +D A+ +MP
Sbjct: 307 ACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMP 361
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 12 LSKTAHHHHQLP---ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MPPLFA 66
L +A H QL A L L + ++I++ I S + F R +F+++ P +F
Sbjct: 27 LIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFP 86
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IR Y++ + +++ ++ M + PD+ T+P ++KA + +G VH+ +F
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
++G +D ++ N L+ +YA C+ + A+ +F+ +P
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+ + P L +N +I YAK + E+I +F EM+ +RPD ++ + A Q
Sbjct: 279 LFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGS 338
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ S++ + + D +I + L+ M+A C ++ A+ +FD
Sbjct: 339 LEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD 382
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 54 RSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R++F + P + ++ ++ AYA+ +E++++F M K ++PD + V+ A
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFT 233
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G S+H+ + K+GL + + +L MYA C ++ AK LFD+M
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM 283
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEML-K 92
T II+ + + P +RS F+ + LF +N +I +Y++ E +++F +M+ K
Sbjct: 124 TRIITMYAMCGSPDD---SRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISK 180
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
T L PDN T+P V+KA +G+G +VH L+ K GL D ++GN L+ Y +
Sbjct: 181 THLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSD 240
Query: 153 AKALFDEMPE 162
A LFD MPE
Sbjct: 241 ALKLFDIMPE 250
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL + + +F+ + L ++N LI YA++S S+ +M +GL PDN T ++
Sbjct: 429 SLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLS 488
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + + +G VH I + L D ++ ++L +Y C E+ + LFD M +
Sbjct: 489 ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMED 543
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA-Y 67
++L + AH A LK L+ N +I I + + ++ + +FN + A +
Sbjct: 597 LRLGREAH------AYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASW 650
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
N +I Y + E+IKLF+EM +TG PD+LT+ V+ A + L+ G
Sbjct: 651 NAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEG 701
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
NT II+ + + P +R +F+ + LF +N ++ AY + +++ +F E++
Sbjct: 37 NTRIITMYSMCGSPSD---SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELIS 93
Query: 93 -TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
T +PDN T P V+KA L +G+G +H + K+ L SD ++GN L+ MY C ++
Sbjct: 94 VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 153
Query: 152 FAKALFDEMPE 162
A +F+ MPE
Sbjct: 154 EAVKVFEHMPE 164
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYI----ISRFILTSLPISLHFTRSLFNNV-MPPLFAYN 68
K+ H+ ++ L+ L + +I +S +I P + + LF+ + L ++N
Sbjct: 422 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA---AQVLFDGMEHRSLVSWN 478
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
+I Y++ E+I LF +ML G++P + V A Q + +G +H K
Sbjct: 479 VMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA 538
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L D ++ ++++ MYA I ++ +FD + E
Sbjct: 539 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE 572
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N L+ YA+ S +++ L+ +M +GL PD T ++ A + + G +H
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL D +IG +LL +Y C + A+ LFD M
Sbjct: 435 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGM 469
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML--KTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
L ++N++I +++ ES F EML + PD T V+ I G +V
Sbjct: 167 LVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV 226
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
H L K+GL+ + + N+L+ MY+ C+ + A+ LFD+
Sbjct: 227 HGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDK 264
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y E+++LF++ML+ GL+PD+ T+ ++ A L+ G + +
Sbjct: 577 SWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQM 636
Query: 126 FKVGLHSDKYIGNT-LLRMYAACKEIDFAKALFDEMP 161
+ K T ++ M ID A L +EMP
Sbjct: 637 LNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMP 673
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 43 LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT 101
+ + P SL + R +F+ + P AYNT+IR++++ S S+ F M G+ DN T
Sbjct: 31 VAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFPS-HSLSYFFSMRSNGIPLDNFT 89
Query: 102 YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+PFV+KA C + + +HSLI K GL SD ++ N L+ +Y C ++ A +FDEM
Sbjct: 90 FPFVLKA---CSRLQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMS 146
Query: 162 E 162
E
Sbjct: 147 E 147
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR-FILTSLP--ISLHFTRSLFNN 59
SR +LI + Q A ++T + + Y S+ F + +L SL + R +F+
Sbjct: 31 SRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDE 90
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR--PDNLTYPFVVKASDQCLLIG 116
+ P F +NTLIRAYA + SI F +M+ + + P+ T+PF++KA+ + +
Sbjct: 91 IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G S+H + K + SD ++ N+L+ Y +C ++D A +F + E
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 196
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLI 115
N MP + A+N LI AY + E++ +F E+ L+ ++ + +T + A Q +
Sbjct: 324 NAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGAL 383
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+G +HS I K G+ + Y+ + L+ MY+ C +++ A+ +F+
Sbjct: 384 ELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFN 426
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++I + + ++++LF +M ++ ++T V+ A + + G V S
Sbjct: 199 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCS 258
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + ++ + + N +L MY C I+ AK LFD M E
Sbjct: 259 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE 297
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSL----DHNTYIISRFILTSLPISLHFTRSLFNNV- 60
+ LI H QL A L+T L T + + L+S P SL + +F+ +
Sbjct: 33 VPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSS-PSSLDYACKVFDQIP 91
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGG 119
P L+ +NTLIRA+A + I+ + +F +ML R P++ T+PFV+KA+ + + G
Sbjct: 92 RPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQ 151
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++H ++ K SD +I N+L+ Y++ ++D A +F ++ E
Sbjct: 152 AIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVE 194
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
V + ++N++I + + E+++LF M RP+ +T V+ A + + + G
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGR 252
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + G+ + + N +L MY C ++ A+ LFD+M E
Sbjct: 253 WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEE 295
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
R +F+ VMP + A+N LI +Y + E++ +F E+ L +P+ +T + A
Sbjct: 317 ARRVFD-VMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAAC 375
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
Q + +GG +H I K G+ + +I +L+ MY+ C ++ A +F
Sbjct: 376 AQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVF 423
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI---LTSLPISLHFTRSLFNNV-MPP 63
+L+ + K+ Q+ A LK L+ + +I + + SL SL + LF P
Sbjct: 10 SLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPD 69
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVH 122
+F +NTLIR ++ +S+ F EM + P D+ ++ F+VKA+ + VG +H
Sbjct: 70 VFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLH 129
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
GL + ++G TL+ MY C + FA+ +FDEMPE
Sbjct: 130 CQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPE 169
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F + M +++T+I +A E+ F E+ + G+RP+ + V+
Sbjct: 218 ELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLS 277
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A Q + G +H I K GL + N LL Y+ C + A+ +F+ +
Sbjct: 278 ACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERI 330
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
QL A +T I ++ + L + SL R LF+ + +F +N LIR YA
Sbjct: 96 QLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNG 155
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+++L+ +M GL PDN T+PFV+KA I G +H + + G D ++G
Sbjct: 156 PYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGA 215
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MYA C + A+ +FD++
Sbjct: 216 ALIDMYAKCGCVGSAREVFDKI 237
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ ++ +N+++ AY++ + L EM+ TGLRP T + AS
Sbjct: 230 AREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASAD 289
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H L ++ S + L+ MYA C + A+ LF+ +
Sbjct: 290 NAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERL 338
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 4/154 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPL-FA 66
+L++ + + HQ+ A L L T++I + I S+ + R + + P F+
Sbjct: 4 SLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLH---SIDYARFVLDQTPSPTDFS 60
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+LIRAY S+ L+ +ML++ +P N T+PFV+KA + G +H+ +
Sbjct: 61 WNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVL 120
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G SD ++ N+L+ MY C +D A+ +D+M
Sbjct: 121 RLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDM 154
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I + E+I L+ M ++P+ +T V+ A + +G VH +
Sbjct: 296 SWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYL 355
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL + + L+ MYA C +ID A +F + E
Sbjct: 356 GRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSE 392
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
QL A +T I ++ + L + SL R LF+ + +F +N LIR YA
Sbjct: 96 QLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNG 155
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+++L+ +M GL PDN T+PFV+KA I G +H + + G D ++G
Sbjct: 156 PYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGA 215
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MYA C + A+ +FD++
Sbjct: 216 ALIDMYAKCGCVGSAREVFDKI 237
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 19 HHQLPALFLKTSLDHN-TYIISRFILTSLPISLHFTRSLFNNVMPP---LFAYNTLIRAY 74
H QL L L H+ T+IIS ++ + P S+ + P +F +N LIR
Sbjct: 49 HQQL----LVQGLPHDPTHIISMYLTFNSPAK---ALSVLRRLHPSSHTVFWWNQLIRRS 101
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ ++L+ M + G RPD+ T+PFV+KA + G SVH+++F G +
Sbjct: 102 VHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNV 161
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GN L+ MY C + A+ +FDEM E
Sbjct: 162 FVGNGLVSMYGRCGAWENARQVFDEMRE 189
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGV---GG 119
L ++N+++ AY + SI ++K+F+ M + G+RPD ++ V+ A C +G G
Sbjct: 195 LVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPA---CASVGAWSRGK 251
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH + GL D ++GN ++ MYA C ++ A +F+ M
Sbjct: 252 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 54 RSLFNNVMPP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYP--FVVK 107
R++F+ ++PP + + LI A+ + E+++LF +ML+ PDN P F +
Sbjct: 429 RAMFD-LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ----PDNFVMPNAFTIS 483
Query: 108 -ASDQCLLIGV---GGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEM 160
A C +G G +H+ + + S ++ N L+ MY+ ++D A+ +FD M
Sbjct: 484 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM 541
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHS 123
++ +I YA+ E++ +F +M G P+ +T +V C L G G H
Sbjct: 335 WSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVT---LVSLLSGCALAGTLLHGKETHC 391
Query: 124 LIFKVGLHSDK-------YIGNTLLRMYAACKEIDFAKALFDEMP 161
K L+ D+ + N L+ MY+ CK A+A+FD +P
Sbjct: 392 HAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 436
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 19 HHQLPALFLKTSLDHN-TYIISRFILTSLPISLHFTRSLFNNVMPP---LFAYNTLIRAY 74
H QL L L H+ T+IIS ++ + P S+ + P +F +N LIR
Sbjct: 68 HQQL----LVQGLPHDPTHIISMYLTFNSPAK---ALSVLRRLHPSSHTVFWWNQLIRRS 120
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ ++L+ M + G RPD+ T+PFV+KA + G SVH+++F G +
Sbjct: 121 VHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNV 180
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GN L+ MY C + A+ +FDEM E
Sbjct: 181 FVGNGLVSMYGRCGAWENARQVFDEMRE 208
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGV---GG 119
L ++N+++ AY + SI ++K+F+ M + G+RPD ++ V+ A C +G G
Sbjct: 214 LVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPA---CASVGAWSRGK 270
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH + GL D ++GN ++ MYA C ++ A +F+ M
Sbjct: 271 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 311
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 54 RSLFNNVMPP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYP--FVVK 107
R++F+ ++PP + + LI A+ + E+++LF +ML+ PDN P F +
Sbjct: 448 RAMFD-LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ----PDNFVMPNAFTIS 502
Query: 108 -ASDQCLLIGV---GGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEM 160
A C +G G +H+ + + S ++ N L+ MY+ ++D A+ +FD M
Sbjct: 503 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM 560
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK--ASDQCLLIGVGGSVHSL 124
++ +I YA+ E++ +F +ML G P+ +T ++ AS LL G H++
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAI 413
Query: 125 IFKVGLHS-----DKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + L D + N L+ MY+ CK A+A+FD +P
Sbjct: 414 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 455
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLF 65
+LI S Q+ A L L + ++I++ I S + F R +F+++ P +F
Sbjct: 26 SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVF 85
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +IR Y++ + +++ ++ +M + PD+ T+P ++KA + +G VH+ +
Sbjct: 86 PWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQV 145
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
F++G +D ++ N L+ +YA C+ + A+ +F+ +P
Sbjct: 146 FRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLP 181
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 50 LHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
L R++F + P + ++ ++ AYA+ +E++++F +M K ++PD + V+
Sbjct: 170 LGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVL 229
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G S+H+ + K+GL ++ + +L MYA C ++ AK LFD+M
Sbjct: 230 NAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKM 283
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+ + P L +N +I YAK + ++I LF EM+ +RPD ++ + A Q
Sbjct: 279 LFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGS 338
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ + + + D +I + L+ M+A C ++ A+++FD
Sbjct: 339 LEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDR 383
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 8 TLIQLSKTAHHH-HQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-MP 62
+L+Q ++ H Q+ A ++ + N + + F + SL + + ++F + P
Sbjct: 22 SLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNP 81
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F +NT+IR YA++ + + +M+ + + PD TYPF++KA + L + G ++H
Sbjct: 82 NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIH 141
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S+ + G S ++ N+LL +YAAC + + A +F+ M E
Sbjct: 142 SVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKE 181
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+N++I +A E++ LF EM G+ PD T ++ AS + + +G VH
Sbjct: 184 LVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHV 243
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ KVGL + ++ N+LL +YA C I A+ +F EM E
Sbjct: 244 YLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSE 282
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 21 QLPALFLKTSLD---HNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A L+++L H+ ++ S+ + S L + LF+ P F +NTLIRA A+
Sbjct: 47 QIHAQALRSTLPDSPHSLFLYSKILHFSSFNDLDYAYRLFSKFDNPNAFMWNTLIRACAR 106
Query: 77 TSCSIE-SIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ E S L+ M++ G + PD TYPFV+KA + G VH+ + K G SD
Sbjct: 107 SYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESDV 166
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161
YI N+L+ YA+C + A+ +FD+MP
Sbjct: 167 YINNSLIHFYASCGCSEPAQYVFDKMP 193
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS--LPISLHFTRSLFNNV 60
SR L+ + ++ AL + N + ++ I+T+ L ++ + R +F+
Sbjct: 29 SRSFNYLLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQ- 87
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP +F +NTLIR YA E++ L+ M GL PDN T+PFVV++ + G
Sbjct: 88 MPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREG 147
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH I K G SD ++ ++L+ MY+ E + +F EM
Sbjct: 148 KEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEM 189
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 54 RSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
RSLF+ V+ L ++N +I AY + + ++KLF M + D +T V+ A
Sbjct: 284 RSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASL 343
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +H L+ + GL + I N L+ MYA C ID A+ +F+ +P
Sbjct: 344 GALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLP 392
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 27 LKTSLDHNTYIISRFILT------SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCS 80
+K D + ++ S + +L + L F + N++ ++ +I Y +
Sbjct: 155 VKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIV----SWTAVIAGYVQNRYF 210
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
E + +F EM+ +G +P+ +T V+ A + +G +H K+G+ D + N L
Sbjct: 211 KEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNAL 270
Query: 141 LRMYAACKEIDFAKALFDEM 160
+ +Y C ++ A++LFD M
Sbjct: 271 IALYGKCGNVETARSLFDGM 290
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 6 IETLIQ---LSKTAHHHHQLPALFLKT-SLDHNTYIISRFILTSLPISLHFTRSLFNNV- 60
I+TLI+ K+ QL A F++T SL H + I I T+L + LH +F +
Sbjct: 8 IKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKL-LHEALLVFKTLE 66
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
PP+ A+ ++IR + S ++ F EM +G PD+ +P V+K+ + + G S
Sbjct: 67 SPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGES 126
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH I ++G+ D Y GN L+ MY+ ID + +F+ MP
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPR 168
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ ++ +D + YI S + + + + + +F+++ ++N+L+ Y +
Sbjct: 227 EIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNG 286
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E+++LF +M+ +RP + + V+ A + +G +H + + G + +I +
Sbjct: 287 RYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIAS 346
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY+ C I A+ +FD M
Sbjct: 347 ALVDMYSKCGNIQAARKIFDRM 368
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F +MP + +YNT+I YA++ +++++ EM + L+PD T V+ +
Sbjct: 160 RKVFE-LMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSE 218
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + G +H + + G+ SD YIG++L+ MYA I+ ++ +F +
Sbjct: 219 YVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHL 267
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNVM 61
++ ++ + ++ H QL A ++T L+ N +++ + I+ S S+ + +F +
Sbjct: 53 RVMSVFKQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIE 112
Query: 62 -PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F +NT+IR +T ++ + + M G DN TY F+VK Q +G
Sbjct: 113 NPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQ 172
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K GL ++ NTL+ MY K+I+ A LF+EMP+
Sbjct: 173 IHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPK 214
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+NT+I E+I+LF ML++GL+PD+ T+ + A + +G VHS
Sbjct: 217 LVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHS 276
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I GL + + N+L+ MYA C ++ A +F++M
Sbjct: 277 CIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKM 313
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 1 MISRQIETLIQ-----LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRS 55
M R +E+ I+ L + H H +L L +S T +++ L + + R
Sbjct: 1 MFLRLLESCIRSRNLILGQIIHQHLLKRSLTLSSS----TVLVNLTRLYASCNEVELARH 56
Query: 56 LFNNVMPPLF---AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+F+ + P A++ +IRAY + +++ L+ +ML +G+RP TYPFV+KA
Sbjct: 57 VFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGL 116
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G +HS + +D Y+ L+ YA C E+D A +FDEMP+
Sbjct: 117 RAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPK 166
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+ + +YN+LI + + ES +LF +M +G+RPD T ++ A +G G S
Sbjct: 371 LKDIVSYNSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSS 430
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H G + I N L+ MY C ++ AK +FD M
Sbjct: 431 CHGYCVVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTM 470
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-----YPFVVKASDQCL 113
MP + A+N +I ++ C + I LF +M ++ NL+ +P + +A
Sbjct: 164 MPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAG---- 219
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G +VH ++G +D + +L +YA K I +A+ +FD
Sbjct: 220 ALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFD 264
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS--LPISLHFTRSLFNNV 60
SR L+ + ++ AL + N + ++ I+T+ L ++ + R +F+
Sbjct: 29 SRSFNYLLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQ- 87
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP +F +NTLIR YA E++ L+ M GL PDN T+PFVV++ + G
Sbjct: 88 MPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREG 147
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH I K G SD ++ ++L+ MY+ E + +F EM
Sbjct: 148 KEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEM 189
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 27 LKTSLDHNTYIISRFILT------SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCS 80
+K D + ++ S + +L + L F + N++ ++ +I Y +
Sbjct: 155 VKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIV----SWTAVIAGYVQNRYF 210
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
E + +F EM+ +G +P+ +T V+ A + +G +H K+G+ D + N L
Sbjct: 211 KEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNAL 270
Query: 141 LRMYAACKEIDFAKALFDEM 160
+ +Y C ++ A++LFD M
Sbjct: 271 IALYGKCGNVETARSLFDGM 290
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP- 63
I L++L KT HQ+ A ++ L+ +++++++FI S ++ + ++ S+F+ V+ P
Sbjct: 32 ISALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPS 91
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK--ASDQCLLIGVGGSV 121
F +N+L+ Y ++ I L+ M + PD T+P ++K AS+ ++ G+ ++
Sbjct: 92 TFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGM--AL 149
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H I + G+ D Y+ +L+ +Y ID A+ +FD M E
Sbjct: 150 HGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSE 190
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R+LF + A++ LI Y + E++K F EM ++PD ++ A Q
Sbjct: 274 ARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQ 333
Query: 112 CLLIGVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + V S + + ++ L+ M A C ++ A LF++MP+
Sbjct: 334 LGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPK 385
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS----LHFTRSLFNNV-MPPLFAYNTLIRAYA 75
Q+ A L+TS + Y S+ +LT+ IS L + +++FN + P L+ +NTLIR YA
Sbjct: 90 QIHAHMLRTSRFCDPYTASK-LLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148
Query: 76 KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+S +S +F ML + P+ T+PF+ KA+ + ++ +G +H ++ K L SD
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161
+I N+L+ Y + D A +F MP
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMP 235
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVMPPLFAYNT 69
K H L + +K SL + +I++ I + P H R N + ++N
Sbjct: 187 KVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAH--RVFTNMPGKDVVSWNA 244
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I A+A +++ LF EM ++P+ +T V+ A + + + G + S I G
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNG 304
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N +L MY C I+ AK LF++M E
Sbjct: 305 FTEHLILNNAMLDMYVKCGCINDAKDLFNKMSE 337
>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVG 118
V P +N LIRAY+KT I+SI + + ++ G PD TYP ++ A + +G
Sbjct: 44 VTHPTSTWNCLIRAYSKTHTPIKSILVSNYFIELGSFYPDRYTYPLLLNACSRLSFASMG 103
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+ + K+GL SD Y+ N LL Y + K++++A+ LFD+M E
Sbjct: 104 QLVHTHLIKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKMYE 147
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 27 LKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMP-PLFAYNTLIRA-YAKTSCSIES 83
+K LD + Y+ + + I L++ R LF+ + + ++NT + A YA ++ I+
Sbjct: 111 IKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASYASSNSVIDL 170
Query: 84 IKLFDEMLKTGLRPDNLTYP--FVVKASDQC-LLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
+ LF ++ G+ D +T F A QC + G +VHS K+GL S + N L
Sbjct: 171 MDLFKRLISEGVGADKITLVILFSAFAQAQCDESLEYGTAVHSCAIKMGLVSMLNVSNAL 230
Query: 141 LRMYAACKEIDFAKALFDEM 160
L MY +++D A +FDEM
Sbjct: 231 LNMYTKYRQMDAASRVFDEM 250
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N ++ Y K I++++LF +M GL PD T ++ A + G VH
Sbjct: 287 LVLWNVMLHGYIKAKRPIDALELFKKMDNEGLIPDENTMVGILAACASLSDLQYGRVVHM 346
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + + D ++ L+ MY C + A F +M
Sbjct: 347 FINRNDIKQDIFVKTALIDMYFKCGSPEEALVTFYKM 383
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 57/97 (58%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +LI YA+ E+I L MLK +P+ T+ ++KA+ G+GG +H+
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHA 176
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L K H D Y+G+ LL MYA C ++D A A+FD++
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +A+ ++ +F EM + G + TY + + G VH+ +
Sbjct: 220 SWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHM 279
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K ++GNT+L MYA + A+ +F+ +
Sbjct: 280 VKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERV 314
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKT-SCSIESIKLFDEMLKTGLR-PDNLTYPFV 105
++++ RS+F + P +F++N+LI+ Y++ + S E I LF ++ +TG P++ T FV
Sbjct: 39 NINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFV 98
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+KA G G VHS + K G S ++ +L+ Y C+EI FA+ +F+EMP
Sbjct: 99 LKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ F R +F MP L A+ +I +A+ E+++LF EM K G++PD +T VV
Sbjct: 142 EIGFARKVFEE-MPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVV 200
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + +G +H+ I K + +D + L+ MYA C I+ AK +F MP
Sbjct: 201 SACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255
>gi|15234984|ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g25270, chloroplastic; Flags: Precursor
gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana]
gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana]
gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 19 HHQLPALFLKTSLDHNTYIISRFILTSLPISLH--FTRSLFNNVMPPLFAYNTLIRAYAK 76
HH +P L+ +L ++ ++ + H F R + P FA+N+LI YA+
Sbjct: 115 HHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSP--FAWNSLISGYAE 172
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+++ L+ +M + G++PD T+P V+KA + +G ++H + K G D Y+
Sbjct: 173 LGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYV 232
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
N L+ MYA C +I A+ +FD +P
Sbjct: 233 LNALVVMYAKCGDIVKARNVFDMIP 257
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKT-SCSIESIKLFDEMLKTGLR-PDNLTYPFV 105
++++ RS+F + P +F++N+LI+ Y++ + S E I LF ++ +TG P++ T FV
Sbjct: 39 NINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFV 98
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+KA G G VHS + K G S ++ +L+ Y C+EI FA+ +F+EMP
Sbjct: 99 LKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ F R +F MP L A+ +I +A+ E+++LF EM K G++PD +T VV
Sbjct: 143 IGFARKVFEE-MPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVS 201
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + +G +H+ I K + +D + L+ MYA C I+ AK +F MP
Sbjct: 202 ACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-----SLHFTRSLFNNV-MP 62
++Q KT Q+ A LKT H ++ +L S I ++ + S+F+N+ P
Sbjct: 31 ILQQCKTIKDLKQVHAHLLKTR-RHLDSTVTENLLESAAIILPATTMEYALSIFDNIDGP 89
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
AYN +IRA+ +++ F +ML+ + D T+P +KA + G +H
Sbjct: 90 DSSAYNIMIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLRGRKEGKQIH 149
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ I K G S+ + NTL+ MYA C EI+ A+ +FD M E
Sbjct: 150 AQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSE 189
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYA 75
Q+ A +K N +++ I + + + R++F+ + +FA+N++ Y
Sbjct: 144 EGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYV 203
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
K+ ++++LF+EM + G+ +++T V+ A + + +G + + GL +
Sbjct: 204 KSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMN 263
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ L+ MYA C E+D A+ LFD+M
Sbjct: 264 LVTALVDMYAKCGEVDKARRLFDQM 288
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 29 TSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKL 86
LD N +++ + + + + R LF+ + + A++ +I Y++ E++ L
Sbjct: 256 NGLDRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDL 315
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
F+EM L P+ +T V+ +G G +H I + G++ +G L+ Y
Sbjct: 316 FNEMQMANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGK 375
Query: 147 CKEIDFAKALFDEMP 161
C +D A +F MP
Sbjct: 376 CGLVDSAIEVFQLMP 390
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 7 ETLIQLSKTAHHHH--QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMPP 63
E L L K +H ++ A +K +L ++ Y+ + I SL ++ ++FN + P
Sbjct: 25 EKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDP 84
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+ YNTLIRA+ + S S+++ F +M K GL DN TYPF++KA + + +H
Sbjct: 85 NVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIH 144
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACK--EIDFAKALFDEMPE 162
+ K G D ++ N+L+ Y+ C +++A LF EM E
Sbjct: 145 CHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGE 186
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ R LF+ MP L + +I +A+ + E+ L+++M GL+PD+ T ++
Sbjct: 266 DMEMARMLFDK-MPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISIL 324
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + L+ +G VH+ I K+ + + N L+ MYA C +D A ++F+EM
Sbjct: 325 AACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEM 378
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 65 FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
F +NTLIRA A S E+ L+ +ML+ G PD T+PFV+KA + G VH
Sbjct: 96 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVH 155
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G D Y+ N L+ Y +C +D A+ +FDEMPE
Sbjct: 156 CQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPE 195
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP L ++N++I A + +++LF +M K+ PD T V+
Sbjct: 183 LDLARKVFDE-MPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKS-FEPDGYTMQSVLS 240
Query: 108 ASDQCLLIGVGGSVHSLIFK---VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G H + + V + D I N+L+ MY C + A+ +F M
Sbjct: 241 ACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGM 296
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL---HFTRSLFNNVMPPL 64
+LI+ K+ Q+ + + T L N + ++ I L + R +F+ + P
Sbjct: 24 SLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPN 83
Query: 65 -FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F +N +I+ Y++ C ++ ++ EML+ G+ PD TYPF++K + + G +H
Sbjct: 84 HFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHD 143
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I K+G S+ ++ N L+ +Y+ E+ A+ +FD
Sbjct: 144 HIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFD 178
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 43 LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL 100
L L + R+ F+ MP ++ +I Y + + E + LF EM ++PD
Sbjct: 233 LKDLNVGKRVHRNYFDK-MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEF 291
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
T ++ A + +G + + I K + D ++GN L+ MY C ++ A +F+ M
Sbjct: 292 TMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM 351
Query: 161 P 161
P
Sbjct: 352 P 352
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 8/156 (5%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPL 64
+T ++ + H H +K N ++ + I L SL + R +F+ + +
Sbjct: 132 DTAVKCGRELHDH------IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+N +I Y ++ ES+KLFDEM + + P ++T V+ A + + VG VH
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRN 245
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
F D ++ Y +LF EM
Sbjct: 246 YFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREM 281
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 65 FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
F +NTLIRA A S E+ L+ +ML+ G PD T+PFV+KA G VH
Sbjct: 115 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 174
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G D Y+ N L+ +Y +C +D A+ +FDEMPE
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 214
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP L ++N++I A + +++LF EM ++ PD T V+
Sbjct: 202 LDLARKVFDE-MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLS 259
Query: 108 ASDQCLLIGVGGSVHSLIFK---VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G H+ + + V + D + N+L+ MY C + A+ +F M
Sbjct: 260 ACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM 315
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 65 FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
F +NTLIRA A S E+ L+ +ML+ G PD T+PFV+KA G VH
Sbjct: 106 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 165
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G D Y+ N L+ +Y +C +D A+ +FDEMPE
Sbjct: 166 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 205
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP L ++N++I A + +++LF EM ++ PD T V+
Sbjct: 193 LDLARKVFDE-MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLS 250
Query: 108 ASDQCLLIGVGGSVHSLIFK---VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G H+ + + V + D + N+L+ MY C + A+ +F M
Sbjct: 251 ACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM 306
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGS 120
P + +N LI+ Y+ E++ L M++TG RPD T+P V+K VG +
Sbjct: 69 PGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGST 128
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH L+ ++G D +G + + Y CK++ A+ +F EMPE
Sbjct: 129 VHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPE 170
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF N + A++ LI YA+ E+ K+F EM ++PD ++ A Q
Sbjct: 255 RDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQM 314
Query: 113 LLIGVGGSVHSLIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ V S + + + S Y+ L+ M A C +D A LF+EMP+
Sbjct: 315 GCFELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQ 365
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L +Y +++ A C E+++LF++M+ G+ PD + + ++K Q L+ G
Sbjct: 368 LVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEG 422
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 43 LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT 101
+ + P SL + R +F+ + P AYNT+IR++++ S S+ F M G+ DN T
Sbjct: 31 VAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFPS-HSLFYFFSMRSNGIPLDNFT 89
Query: 102 YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+PFV+KA C + + +HSLI K GL SD ++ N L+ +Y C ++ A +FDEM
Sbjct: 90 FPFVLKA---CSRLQINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMS 146
Query: 162 E 162
E
Sbjct: 147 E 147
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
L +L +K LD + ++ + I SL +F+ + +++T+I ++
Sbjct: 105 HLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNG 164
Query: 79 CSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+ E++ LF++M L+ + PD +T V+ A + +G V + I ++GL +G
Sbjct: 165 YASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALG 224
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
L+ M++ C ID + +F++M
Sbjct: 225 TALIDMFSRCGSIDESIVVFEKM 247
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ + P YNT+IRAY +SC E+++L ML+ G+ P+ T PFVVKA
Sbjct: 66 RRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIA 125
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+VH + ++GL ++GN LL YA+ + ++ FDEM
Sbjct: 126 QAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEM 173
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S++ R F++ MP + ++N +I Y + E++ L+++M GL PD +T V+
Sbjct: 294 SVNAARCWFDH-MPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVL 352
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
AS + + VG VH I + D + N+LL MYA C ++D A +LF EM
Sbjct: 353 SASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEM 406
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL +R F+ ++ + ++N++I YA+ + E LF EM + G D T ++
Sbjct: 162 SLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLI 221
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A Q + +G VH + G D + + L+ MY C ++ A+ F+ MP
Sbjct: 222 ACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMP 275
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL---HFTRSLFNNV-MPP 63
+LI+ K+ Q+ + + T L N + ++ I L + R +F+ + P
Sbjct: 24 SLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPN 83
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F +N +I+ Y++ C ++ ++ EML+ G+ PD TYPF++K + + G +H
Sbjct: 84 HFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHD 143
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I K+G S+ ++ N L+ +Y+ E+ A+ +FD
Sbjct: 144 HIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFD 178
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPL 64
+T ++ + H H +K N ++ + I L SL + R +F+ + +
Sbjct: 132 DTAVKCGRELHDH------IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+N +I Y ++ ES+KLFDEM + + P ++T V+ A + + VG VH
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY 245
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + + + + N L+ MYAAC ++D A +FD M
Sbjct: 246 VKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNM 281
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 39 SRFILTSLPISLHFT--------RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFD 88
SR +++ I FT R+ F+ MP ++ +I Y + + E + LF
Sbjct: 283 SRDVISWTAIVTGFTNLGQVGLARNYFDK-MPERDFVSWTAMIDGYLQVNRFKEVLSLFR 341
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
EM ++PD T ++ A + +G + + I K + D ++GN L+ MY C
Sbjct: 342 EMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCG 401
Query: 149 EIDFAKALFDEMP 161
++ A +F+ MP
Sbjct: 402 NVEKAIRIFNAMP 414
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 56 LFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF N+ F +N +IR + +++ + M G+R DN TYPFV+KA
Sbjct: 82 LFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYD 141
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G VH + K GL D YIGN+L+ MYA I+ A+ +F EMP
Sbjct: 142 LAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMP 188
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESI 84
+K+ LD + YI + I+ I + + MP L ++N++I Y S+
Sbjct: 153 IKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSL 212
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
F EM +G++ D + ++ A + G +H + + L D + +L+ MY
Sbjct: 213 SCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMY 272
Query: 145 AACKEIDFAKALFDEMPE 162
A C +D+A+ LFD++ +
Sbjct: 273 AKCGRMDYAERLFDQITD 290
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I +Y K + +++ LF ++ L+PD T ++ A + + +H
Sbjct: 395 LISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHG 454
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+ L S+ ++ N+++ MY C + A+ +FD M
Sbjct: 455 YVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRM 491
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVK 107
+ + LF+ + + A+N +I Y+ + S ES +M + G L PD +T ++
Sbjct: 278 MDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLP 337
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q I +G SVH + G + L+ MY C ++ A+ LF +M E
Sbjct: 338 PCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNE 392
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
Q+ K LD NT++ + + + +L R +F+ + + ++NT+I AYA
Sbjct: 450 EQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIH 509
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI---FKVGLHSDK 134
SI+LF EM + G P+ T+ ++ + L+ G + + + + +
Sbjct: 510 GFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEH 569
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161
Y +L + +D AK +EMP
Sbjct: 570 Y--GCILDLIGRTGNLDHAKNFIEEMP 594
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 13/151 (8%)
Query: 21 QLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYA 75
Q+ A +KT+L ++ + +SR I L+ + L + S+F+ + P F + LI+ ++
Sbjct: 24 QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFS 83
Query: 76 KTSCSIESIKLFDEMLK-----TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
TS +ES+ L+ ML +G+ + P V+KA + L G VH + K L
Sbjct: 84 DTSNPVESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
D ++GN+++RMY EI+ A+ +FD MP
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I AY + C ++++ LF EML GLRPD V+ A + G +H+ +
Sbjct: 240 WTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 299
Query: 127 --KVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
K+ L S +IG+ L+ MY+ C I+ A +F
Sbjct: 300 MNKIEL-SSGFIGSALIDMYSKCGYIENAYHVF 331
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 2 ISRQIETLIQLSKTAHHH-HQLPALFLKTSL-----DHNTYIISRFILTSLPISLHFTRS 55
I R+ +L+QL ++ Q+ A ++ + D N ++I F L SL + F
Sbjct: 33 ILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLI--FALVSLSAPMSFAAQ 90
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCL 113
+FN + P +F +NT+IR +A++ +++LF +M + + PD T+PF+ KA + +
Sbjct: 91 IFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLM 150
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +HS++ + G S +++ N+L+ MY+ + A +F+ M
Sbjct: 151 DVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIM 197
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N++I +A E++ L+ EM G+ PD T ++ A + + +G VH +
Sbjct: 204 AWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM 263
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KVGL +++ N LL +Y+ C A+ +FDEM E
Sbjct: 264 VKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEE 300
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 65 FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
F +NTLIRA A S E+ L+ +ML+ G PD T+PFV+KA G VH
Sbjct: 172 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 231
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G D Y+ N L+ +Y +C +D A+ +FDEMPE
Sbjct: 232 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 271
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP L ++N++I A + +++LF EM ++ PD T V+
Sbjct: 259 LDLARKVFDE-MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLS 316
Query: 108 ASDQCLLIGVGGSVHSLIFK---VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + +G H+ + + V + D + N+L+ MY C + A+ +F M +
Sbjct: 317 ACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 374
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 3 SRQI--ETLIQLSKTAHHHH--QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLF 57
SR+I E L L K A+ + QL A ++ +L + +I + I SL + +F
Sbjct: 15 SRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVF 74
Query: 58 NNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N V P + N+LIRA+A+ S ++ +F EM + GL DN TYPF++KA +
Sbjct: 75 NQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLP 134
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF--AKALFDEMPE 162
V +H+ I K+GL SD Y+ N L+ Y+ C + A LF++M E
Sbjct: 135 VVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSE 182
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 50 LHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ R +F+ + P + + +I YA+ E+ +L D+M+ +GL+ D ++
Sbjct: 263 MEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + L+ +G +HS++ + L S+ Y+ N LL MYA C + A +F+++P+
Sbjct: 323 AACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK 378
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ ++ +++L N Y+++ + + + +L +FN++ L ++NT++
Sbjct: 336 RIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHG 395
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
E+I+LF M + G+RPD +T+ V+ + + LI G
Sbjct: 396 HGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEG 435
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSL-----PISL----HFTRSLFNNV-MPPLFAYNTL 70
Q+ AL + N + + +LT+ P + + +F + P F +NT
Sbjct: 19 QIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMWNTY 78
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
IR +++ + ++ L+ +M ++PDN T+P V+KA + + G VH +F++G
Sbjct: 79 IRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGF 138
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDE 159
S+ + NTLL +A C ++ A +FD+
Sbjct: 139 GSNVVVRNTLLVFHAKCGDLKVANDIFDD 167
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ M + ++N ++ Y + + E+++LFDEM + G PD +T ++ A C
Sbjct: 224 RRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSA---C 280
Query: 113 LLIG-VGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEI 150
+G G VH+ I ++ +GN L+ MYA C I
Sbjct: 281 ADLGDXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNI 320
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 65 FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
F +NTLIRA A S E+ L+ +ML+ G PD T+PFV+KA G VH
Sbjct: 92 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 151
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G D Y+ N L+ +Y +C +D A+ +FDEMPE
Sbjct: 152 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 191
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP L ++N++I A + +++LF EM ++ PD T V+
Sbjct: 179 LDLARKVFDE-MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLS 236
Query: 108 ASDQCLLIGVGGSVHSLIFK---VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + +G H+ + + V + D + N+L+ MY C + A+ +F M +
Sbjct: 237 ACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 294
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 47 PISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
P ++ LF + P L +N +IR +++T+ IE+I+ ++ M L +NLTYPF+
Sbjct: 743 PTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFL 802
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+KA + + +VH+ + K+G SD ++ N L+ YA E+ FA+ +FDEM E
Sbjct: 803 LKACARISNVSCT-TVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSE 858
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF++ MP + ++ ++I +Y++ ++++LF EM+ T ++PD +T V+ A
Sbjct: 982 RKLFDD-MPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAH 1040
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ VG +VH I K +++D Y+GN L+ MY C ++ ++F+EM
Sbjct: 1041 IGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEM 1089
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L F R +F+ + L ++N+LI Y + E + +F+EM ++ D +T +VK
Sbjct: 846 LGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVT---MVKV 902
Query: 109 SDQCLLIGVGGSVHSLIFKV---GLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
C ++G G V ++I + + D Y+GNTL+ MY +D A+ +FD M
Sbjct: 903 VLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRM 957
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LF 65
+LI S H +Q+ A L T L + ++I++ + + I + R LF+ P +F
Sbjct: 80 SLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVF 139
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N ++R Y++ +I+++ M + PD ++P V+KA + +G VH I
Sbjct: 140 LWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQI 199
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
F+ G SD ++ N L+ +YA C EI A A+F +
Sbjct: 200 FRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL 234
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R FN V P L +N +I Y K + E+I+LF M +RPD++T + A Q
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQ 387
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + I +D + +L+ YA C +D A+ +FD +P+
Sbjct: 388 IGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPD 438
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I YA+ IE++++F EM KT +RPD + V++A + G S+H
Sbjct: 239 IVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHG 298
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+GL + + +L +YA C + A+ F+++
Sbjct: 299 CVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQV 335
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR-FILTSLPI--SLHFTRSLFNNV- 60
Q +LI H +L A L++ L + Y S+ F + +L SL + R +F +
Sbjct: 33 QTLSLIDQCTNLKHLKELHATILRSGLFFHPYNASKLFSVAALSSFSSLDYARKVFEEIS 92
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGG 119
P L+ +NTLIRA+A + I S+ +F ML P+ T+PFV+KA+ +
Sbjct: 93 QPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQ 152
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++H + K L SD +I N+L+ YA+C ++D A ++F ++ E
Sbjct: 153 AIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEE 195
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
RS+F+ MP + A+N LI AY + E++ +F E+ L +PD +T + A
Sbjct: 318 ARSVFD-AMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSAC 376
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
Q I +GG +H I K + + ++ +L+ MY+ C E++ A +F
Sbjct: 377 AQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIF 424
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++I+ + C ++++LF M +RP+++T V+ A + + + G V
Sbjct: 198 VVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCH 257
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + G++ + + N +L MY ++ A+ LFD+M E
Sbjct: 258 YIERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEE 296
>gi|449488709|ref|XP_004158148.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 556
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSC 79
Q+ +KT+LD + + +S+ +L S + + + S+F + P LF +NT++R Y+ ++
Sbjct: 46 QIHCYMVKTALDLDPFTLSK-LLASAILDIKYAASIFREIRNPNLFMFNTMLRGYSNSND 104
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S ++ +F+++ PD ++ +KA + L I VG +H ++ K G + N
Sbjct: 105 SKQAFVIFNDLRNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSGHGLFNDVNNI 164
Query: 140 LLRMYAACKEIDFAKALFDEMPE 162
LL Y AC++I A LFDE+ +
Sbjct: 165 LLHFYGACEQIKDAHKLFDEISQ 187
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NTL+ Y + S I + F +M + GL + T V A G S++
Sbjct: 191 LVSWNTLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYG 250
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+GL S+ + L+ MY ++D A +F+E+ E
Sbjct: 251 HCIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAE 289
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 55/101 (54%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L YN ++++ A + + LF E+ GL PDN T P V+K+ + + G V
Sbjct: 9 PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H K GL D Y+ N+L+ MYA+ +I+ +FDEMP+
Sbjct: 69 HGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQ 109
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F RS +V+ + ++ Y + + E+++LF M G+RPDN ++ Q
Sbjct: 236 FERSPVKDVV----LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQ 291
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I + + DK +G L+ MYA C I+ A +F E+ E
Sbjct: 292 TGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKE 342
>gi|449451962|ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSC 79
Q+ +KT+LD + + +S+ +L S + + + S+F + P LF +NT++R Y+ ++
Sbjct: 46 QIHCYMVKTALDLDPFTLSK-LLASAILDIKYAASIFREIRNPNLFMFNTMLRGYSNSND 104
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S ++ +F+++ PD ++ +KA + L I VG +H ++ K G + N
Sbjct: 105 SKQAFVIFNDLRNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSGHGLFNDVNNI 164
Query: 140 LLRMYAACKEIDFAKALFDEMPE 162
LL Y AC++I A LFDE+ +
Sbjct: 165 LLHFYGACEQIKDAHKLFDEISQ 187
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NTL+ Y + S I + F +M + GL + T V A G S++
Sbjct: 191 LVSWNTLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYG 250
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+GL S+ + L+ MY ++D A +F+E+ E
Sbjct: 251 HCIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAE 289
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 55 SLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
++FN V + +N LI YAK +++ M G++P++ T ++ A
Sbjct: 282 TIFNEVAEKDVIVWNCLIDNYAKNGLIKKAVASLHLMKLEGMKPNSSTLAGLISACATSG 341
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G + + GL D +G TL+ MYA +D A +FD+M
Sbjct: 342 AVSTGKYLANYADNEGLDLDVVLGTTLIGMYAKFGFLDKAIDIFDKMK 389
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 12/160 (7%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIIS---RFILTSLPISLHFTRSLFNNVM-PPLF 65
I KT H Q+ A F+KT H+ + +F+ S + + R F+ + P F
Sbjct: 22 ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCF 81
Query: 66 AYNTLIRAYAKTSC-------SIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGV 117
++NT+IRA A + S+E++ F ML GL P+ T+P V+KA + I
Sbjct: 82 SWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEE 141
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
G +H + K+GL SD+++ + L+R+Y C + A LF
Sbjct: 142 GKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLF 181
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-------LHFTRS 55
SR + L++ ++ H Q+ A + + + S+ I + +S L R
Sbjct: 10 SRHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARR 69
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+ + P F YNTL+RAY+ + C E+++L +L+ G+ P+ T PFV+KA
Sbjct: 70 LFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRA 129
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + H ++ K+G ++ N LL +A+ + ++ F EM +
Sbjct: 130 VEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMAD 177
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL +R F + + ++NT+I YA+ E+ LF EM GL D T ++
Sbjct: 164 SLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLF 223
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + VG VH + G D+ +GN LL MY C ++ A FD MP
Sbjct: 224 ACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMP 277
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I Y + E++ L++ M G+ PD T V+ A Q + G +H
Sbjct: 312 IVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHC 371
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + N+LL MYA C ++D A LF EMP
Sbjct: 372 YVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMP 409
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
QL A + + N + ++ + L + SL LF+ + LF +N +IR YA
Sbjct: 22 QLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNG 81
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+I L+ +M GL PD T+PFV+KA + G +H + + GL SD ++G
Sbjct: 82 PYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGA 141
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA C ++ A+ +FD++ E
Sbjct: 142 ALIDMYAKCGCVESARQVFDKIDE 165
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ Y++ ES+ L M GL+P T+ + AS L+ G +H +
Sbjct: 171 WNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSW 230
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S+ + L+ MYA ++ A++LF+ + E
Sbjct: 231 RHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEE 266
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 6 IETLIQ-----LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV 60
+ET I+ L + H H +L L +S T +++ L + + R +F+ +
Sbjct: 6 LETCIRSRNLVLGQVIHQHLLKRSLTLSSS----TVLVNLTRLYASCNEVELARHVFDEI 61
Query: 61 MPPLF---AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
P A++ +IRAYA + +++ L+ +ML +G+RP TYPFV+KA I
Sbjct: 62 PHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDD 121
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +HS + +D Y+ L+ YA C E++ A +FDEMP+
Sbjct: 122 GKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPK 166
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+ + +YN+LI ES +LF EM +G+RPD T V+ A +G G S
Sbjct: 371 LKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSS 430
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H G + I N L+ MY C ++D AK +FD M
Sbjct: 431 CHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTM 470
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGV 117
MP + A+N +I ++ C + I LF +M + GL P+ T + A + +
Sbjct: 164 MPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALRE 223
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G +VH ++G +D + +L +YA K I +A+ +FD
Sbjct: 224 GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFD 264
>gi|356565618|ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 619
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV 60
++ +L+Q KT + QL L T HN + +++ I + + L +L + +
Sbjct: 4 LTHSFNSLLQACKTLNQAKQLHHRILLTGSHHNHFFVTKLIQIYADSNDLRSAVTLLHQI 63
Query: 61 M-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P +FA+ +++ +++ + I+ + E+ + G+ PD +P V+KA Q G G
Sbjct: 64 SHPNVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLKACAQLSRFGSGR 123
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + G S+ + N++L MY+ C ++ A+ +FDEM E
Sbjct: 124 GVHKDVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSE 166
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR-FILTSLP--ISLHFTRSLF 57
+I R + +L QL +T H ++T + Y S+ F + +L SL + R +F
Sbjct: 36 LIERCV-SLRQLKQTHGH-------MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVF 87
Query: 58 NNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLI 115
+ + P FA+NTLIRAYA + SI F +M+ ++ P+ T+PF++KA+ + +
Sbjct: 88 DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G S+H + K + SD ++ N+L+ Y +C ++D A +F + E
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 194
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLI 115
N MP + A+N LI AY + E++ +F E+ L+ ++ + +T + A Q +
Sbjct: 322 NSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL 381
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+G +HS I K G+ + ++ + L+ MY+ C +++ ++ +F+
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFN 424
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++I + + ++++LF +M ++ ++T V+ A + + G V S
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + ++ + + N +L MY C I+ AK LFD M E
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE 295
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 56/97 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +LI YA+ E+I L MLK +P+ T+ ++KA G+GG +H+
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHA 176
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L K H D Y+G+ LL MYA C ++D A A+FD++
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +A+ ++ +F EM + G + TY + A + G VH+ +
Sbjct: 220 SWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHM 279
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K ++GNT+L MYA + A+ +F+ +
Sbjct: 280 IKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERV 314
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 38 ISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR 96
I F T +++ R LF+ + P +F +NT+++ Y++ + ++ +MLK +
Sbjct: 26 IFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVL 85
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156
PD TYPF++K + + G +H + K GL S+ ++ N L+ MY+ C D A+ +
Sbjct: 86 PDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGI 145
Query: 157 FD 158
FD
Sbjct: 146 FD 147
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
L R F+ MP ++ +I Y + +C E++ LF EM + ++PD T ++
Sbjct: 270 QLDIARKYFDQ-MPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSIL 328
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A Q + +G V + I K + +D Y+GN L+ MY C ++ A+++F+ MP
Sbjct: 329 TACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMP 383
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESI 84
+K L N ++ + I + SL R +F+ + + +N +I AY + ++
Sbjct: 115 VKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTK 174
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
LF EM K + P ++T V+ A + + G VH I + S+ + N L+ MY
Sbjct: 175 TLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMY 234
Query: 145 AACKEIDFAKALFDEM 160
AAC E+ A +F+ M
Sbjct: 235 AACGEMSVALGIFESM 250
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query: 21 QLPAL----FLKTSLDHNTYIISRFILTSLPISLHF-------TRSLFNNV-MPPLFAYN 68
QL AL +++T +D N ++ +L I ++F RS+FN++ P F +
Sbjct: 333 QLGALELGEWVRTYIDKNKVKNDAYVGNAL-IDMYFKCGNVEKARSIFNSMPRPDKFTWT 391
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
+I A E++ +F +MLK + PD +TY V+ A C G+ +L+++
Sbjct: 392 AMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVLCA---CTHTGMVDEGRNLLYED 448
Query: 129 GLHSDKYIGNTLLRMY 144
HS G L+R Y
Sbjct: 449 PGHS----GCQLIRRY 460
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ ++ +AK I F E+++ G RPDN T PFV++A + +G +H ++
Sbjct: 127 SWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIV 186
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+K GL D ++ L+ MY C+EI+ A+ LFD+M E
Sbjct: 187 YKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQE 223
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ ++ +AK + F E+++ G RPDN T PFV++A + +G +H ++
Sbjct: 803 SWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIV 862
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+K GL D ++ L+ MY C+EI+ A+ LFD+M E
Sbjct: 863 YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXE 899
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAY 67
+Q+ + HH + K LD + ++ + + + + R LF+ + L +
Sbjct: 852 LQMGRLIHH------IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTW 905
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+I YA+ + ES+ LFD+M + G+ PD + VV A + + ++ I +
Sbjct: 906 TVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 965
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D +G ++ M+A C ++ A+ +FD M E
Sbjct: 966 KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 1000
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMP-PLFAY 67
+Q+ + HH + K LD + ++ + + + + R LF+ + L +
Sbjct: 176 LQMGRLIHH------IVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 229
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+I YA+ + ES+ LF++M + G+ PD + VV A + + + I +
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 289
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D +G ++ MYA C ++ A+ +FD M E
Sbjct: 290 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 324
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 3 SRQI--ETLIQLSKTAHHHH--QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLF 57
SR+I E L L K A+ + QL A ++ +L + +I + I SL + +F
Sbjct: 15 SRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVF 74
Query: 58 NNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N V P + N+LIRA+A S ++ +F EM + GL DN TYPF++KA +
Sbjct: 75 NQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLP 134
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF--AKALFDEMPE 162
V +H+ I K+GL SD Y+ N L+ Y+ C + A LF++M E
Sbjct: 135 VVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSE 182
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 50 LHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ R +F+ + P + + +I YA+ E+ KL D+M+ +GLR D ++
Sbjct: 263 MEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISIL 322
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + L+ +G HS+I K L+S+ + N LL MYA C + A +F++MP+
Sbjct: 323 AACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPK 378
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 36/178 (20%)
Query: 20 HQLPALFLKTSLDHNTYIIS---RFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYA 75
++ A LKT L + +S F TS +++ +F + P LF++NT+IR ++
Sbjct: 41 QKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFS 100
Query: 76 KTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
++S +I LF +ML + ++P LTYP V KA Q L G +H + K+GL D
Sbjct: 101 QSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDP 160
Query: 135 YIGNTLLRMY-------------------------------AACKEIDFAKALFDEMP 161
+I NT++ MY A C E+D ++ LFDEMP
Sbjct: 161 FIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMP 218
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 53 TRSLFNNVMPPL---FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
+R LF+ + PL ++N++I Y + E++ LF +M + ++P T ++ AS
Sbjct: 210 SRKLFDEM--PLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNAS 267
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + G +H I K + + +++ MY C I A +F+ P
Sbjct: 268 ARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAP 319
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT+I A C E+I+LF + + LRPD++T+ V+ A + L+ S
Sbjct: 323 LSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFS 382
Query: 124 LIFK 127
L+ K
Sbjct: 383 LMSK 386
>gi|255539733|ref|XP_002510931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550046|gb|EEF51533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 1 MISRQIETLIQLSKTAHH---HHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLF 57
+IS +ET +L+ H H +P L+ + ++ ++ + H
Sbjct: 95 IISSLLETCYRLNSIDHGMRIHRLIPTSILRKNTGVSSKLLRLYASCGYMDEAHQMFDEM 154
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+N FA+N+LI Y++ ++I L+ +M + + PD T+P V+KA LI V
Sbjct: 155 SNRDESAFAWNSLIAGYSELGLYEDAIALYFQMDEEYVEPDEFTFPRVLKACGGLGLIQV 214
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +VH + ++G +D++ N L+ MYA C +I A+++F++M
Sbjct: 215 GEAVHRDLIRLGFANDRFASNALVDMYAKCGDIVKARSIFEKM 257
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F + ++N+++ Y + IE+ ML+ GL D++ ++ A+
Sbjct: 250 ARSIFEKMASKDSVSWNSMLTGYVRHGLIIEAFHTGRRMLQDGLELDSVAISSLL-ANVS 308
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+GV +H I + G+ D I N+L+ MY++ ++ + LFD M E
Sbjct: 309 SFKLGV--QIHGWILRRGMQWDLSIANSLIVMYSSNGKLVQTRWLFDNMQE 357
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
IK + + G++ D +++ + I G +H LI L + + + LLR+
Sbjct: 78 IKDLESSIGKGIKIDTQIISSLLETCYRLNSIDHGMRIHRLIPTSILRKNTGVSSKLLRL 137
Query: 144 YAACKEIDFAKALFDEM 160
YA+C +D A +FDEM
Sbjct: 138 YASCGYMDEAHQMFDEM 154
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVM- 61
+QI+TLI ++ T +H Q+ + L H+T++++ + +L H++ LF++
Sbjct: 14 QQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQF 73
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P +F YNTLI + E++ LF + K GL T+P V+KA + +G +
Sbjct: 74 PNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDL 133
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HSL+ K G + D +LL +Y+ ++ A +F+E+PE
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPE 174
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
L +L +K +H+ ++ + + S L+ +F + + + L Y
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAG 191
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGLHSDKY 135
E+I LF +M++ G+RPD+ F+V+ C+ +G G + + ++ + + +
Sbjct: 192 KHREAIDLFKKMVEMGVRPDSY---FIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSF 248
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ TL+ +YA C +++ A+++FD M E
Sbjct: 249 VRTTLVNLYAKCGKMEKARSVFDSMGE 275
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F+++ + ++T+I+ YA S E I+ F +ML+ L+PD + + +
Sbjct: 266 ARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCAS 325
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G SLI + ++ ++ N L+ MYA C + +F EM E
Sbjct: 326 LGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKE 376
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+++ LF ++ +I AY++ + E KLF M+K G+ PD+ +P +++
Sbjct: 134 ARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCAN 193
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
C + G +HS++ K+G+ S + N++L +YA C E+DFA F M E
Sbjct: 194 CGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRE 244
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 59 NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ +F + +I +++ +F +M G+ P+ +T V A +I G
Sbjct: 312 GITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQG 371
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
VHS+ K+G D +GN+L+ MY+ C +++ A+ +FD
Sbjct: 372 SEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFD 411
>gi|255549932|ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544922|gb|EEF46437.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R LF+ + LF +N LIR YA SI+L+ ++ GL PDN T+PFV+K
Sbjct: 137 SLCEARLLFDKIPKRNLFLWNVLIRGYAWYGPYEASIQLYYKIFDYGLVPDNFTFPFVLK 196
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A I G +H + + G D ++G L+ MY+ C +D A+ +F + P
Sbjct: 197 ACSALSAIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGCVDNAREVFHKFP 250
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ AY++ +S+ L EM+ G+RP T V+ AS + G +H +
Sbjct: 257 WNSMLAAYSQNGKPDKSLALCSEMVLAGVRPTEATLVTVISASADIAALPQGRELHGFAW 316
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ S+ + TL+ MYA C + A+ LF+++
Sbjct: 317 RRRFESNDKVKTTLIDMYAKCGTMKVAQNLFEQL 350
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ A+ ++T ++++ + + + + + R +F+ + P +F +NTL + Y +
Sbjct: 29 KIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQ 88
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
ES+ L+ +M G+RPD TYPFVVKA Q ++ G S+H+ + K G +
Sbjct: 89 LPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVAT 148
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY E+ A+ LF+ M
Sbjct: 149 ELVMMYMKFGELSSAEFLFESM 170
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S R LF+++ + +++T+I YA S E++ LF M GLRP+ +T+ V+
Sbjct: 260 STEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLS 319
Query: 108 ASDQCLLIGVGGSVHSLIFKV 128
A L+ G SL+ ++
Sbjct: 320 ACSHAGLVNEGKRYFSLMVRL 340
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 13/151 (8%)
Query: 21 QLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYA 75
Q+ A +KT+L ++ + +SR I L+ + L + S+F+ + P F + LI+ ++
Sbjct: 24 QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFS 83
Query: 76 KTSCSIESIKLFDEMLK-----TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
TS +ES+ L+ ML +G+ + P V+KA + L G VH + K L
Sbjct: 84 DTSNPVESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
D ++GN+++RMY EI+ A+ +FD MP
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 24 ALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSC 79
A L+T L + + SR F + S LH+ + + + P LF YN LIR + +
Sbjct: 38 AHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSEN 97
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S + + L+ GL PDN+T+PF+VKA Q +G H K G D Y+ N+
Sbjct: 98 PENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNS 157
Query: 140 LLRMYAACKEIDFAKALFDEM 160
L+ MYA+ +I+ A+++F M
Sbjct: 158 LVHMYASVGDINAARSVFQRM 178
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP L ++T+I YA+ +C ++++ F+ + G+ + V+ +
Sbjct: 202 ARELFDR-MPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCA 260
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G H + + L + +G ++ MYA C ++ A +F+++PE
Sbjct: 261 HLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPE 312
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH-FTRSLF-NNV 60
S+ E L+ H Q L LD + +++RFI TS + L + S+F +N
Sbjct: 30 SQHAEQLLCHCTNLSHLQQTQGFMLTRGLDQDDILLARFIYTSASLGLSSYAYSVFISNH 89
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +F YN +I A + +S +I LF+ + G+ PD+ ++PFV+KA + VG
Sbjct: 90 RPSIFFYNNVIWALS-SSNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQ 148
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+H GL S + +L++MY++C + A+ LFD
Sbjct: 149 IHCQAIVSGLDSHPSVVTSLVQMYSSCAHLSSARKLFD 186
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-- 63
+ +L+Q+ + H LF + H + + ++ R+LF MP
Sbjct: 165 VTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFE-CMPEKD 223
Query: 64 --LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
+ ++ TLI Y +T E+I LF ML ++PD + V+ A + +G +
Sbjct: 224 RDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWI 283
Query: 122 HSLIFKVGLHSDKY-----IGNTLLRMYAACKEIDFAKALFDEM 160
H+ I K H++K + N+L+ MYA +I A+ LF M
Sbjct: 284 HNYIEK---HNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNM 324
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 2 ISRQIETLIQLSKTAHHH-HQLPALFLKTSL-----DHNTYIISRFILTSLPISLHFTRS 55
I R+ +L+QL ++ Q+ A ++ + D N ++I F L SL + F
Sbjct: 33 ILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLI--FALVSLSAPMSFAAQ 90
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCL 113
+FN + P +F +NT+IR +A++ +++LF +M + + PD T+PF+ KA + +
Sbjct: 91 IFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLM 150
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +HS++ + G S +++ N+L+ MY+ + A +F+ M
Sbjct: 151 DVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIM 197
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N++I +A E++ L+ EM G+ PD T ++ A + + +G VH +
Sbjct: 204 AWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM 263
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KVGL +++ N LL +Y+ C A+ +FDEM E
Sbjct: 264 VKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEE 300
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 4/158 (2%)
Query: 7 ETLIQLSKTAHHHH--QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MP 62
E L+ L K ++ Q+ ++ L ++ ++ + I S + + +F+ + P
Sbjct: 26 EALVLLKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVFDQLNAP 85
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F +N +IRAY + LF ML G PD TYP V+ A + VG H
Sbjct: 86 DVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAH 145
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+L K+G D Y+ NT++ +Y C+ +D +FD+M
Sbjct: 146 ALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKM 183
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
T +I+ F+ L R LF MP + ++ +I Y K IE+ LF+ M
Sbjct: 192 TTVIAGFVACG---KLDTARELFEQ-MPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQA 247
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
+RP+ T +V+A + + +G VH K G + ++G L+ MY+ C +D
Sbjct: 248 DNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDD 307
Query: 153 AKALFDEM 160
A+ +FD M
Sbjct: 308 ARTVFDMM 315
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKT---SLDHNTYIISRFILTSLPISL-HFTRSL 56
M +R++ L++ S + Q L K L ++ Y+ I + +L + +++
Sbjct: 1 MDARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNV 60
Query: 57 FNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDE-MLKTGLRPDNLTYPFVVKASDQCL 113
F+ + P + N L+ Y + E++ LFD+ M L+PD+ TYP V+KA
Sbjct: 61 FDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLR 120
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H+ + K GL D +G++L+ MYA C E + A LFDEMP+
Sbjct: 121 RVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPD 169
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y ++++LF EM K+ + PD +T+ V+ A Q + G +H+LI
Sbjct: 376 SWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLI 435
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L +++ + LL MYA C ++ A +F +PE
Sbjct: 436 VERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPE 472
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+NT+I Y ++ E+++ F M + G PD++T + + + L + G +H +
Sbjct: 174 CWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKEL 233
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G D ++ L+ MY C +++ A +F++MP
Sbjct: 234 VNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMP 269
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+N++I Y I I+LF M G++P T + A Q + G VH
Sbjct: 273 VVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHG 332
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + + D ++ ++L+ +Y C +++ A+ +F MP+
Sbjct: 333 YIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPK 371
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L ++ ++I AY E+++LF EML++ ++PD +T+ ++ A L+ G
Sbjct: 475 LVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDG 529
>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19191, mitochondrial; Flags: Precursor
gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N IR + +ES+ LF EM + G P+N T+PFV KA + +G VH+ +
Sbjct: 19 AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 78
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD ++G + M+ C +D+A +F+ MPE
Sbjct: 79 IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPE 115
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I YA+ E++ LF M+K+G +PD +T ++ + + G + +
Sbjct: 324 SWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARA 383
Query: 126 FKVGLHSDKY-IGNTLLRMYAACKEIDFAKALFDEMPE 162
G D I N L+ MY+ C I A+ +FD PE
Sbjct: 384 DIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPE 421
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+H R +F+N + + T+I YA +E++KLF +M+ +P+++T+ V++
Sbjct: 408 SIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQ 467
Query: 108 A 108
A
Sbjct: 468 A 468
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++ +AY+ + ++ L+ ML+ +PD T+ + + + G +HS
Sbjct: 221 VVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHS 280
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G D NT + MY+ ++ A+ LFD M
Sbjct: 281 HAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIM 317
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYI----ISRFILTSLPISLHFTRSLFNNVMPPLFAYN 68
S + H HH P ++ ++N Y+ ++I L I HF + N P L YN
Sbjct: 16 SNSLHTHHIFP---IQQQNNNNHYLKLINSCKYINPLLQIHTHFLQ--IKN--PSLILYN 68
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
+ I+AY+K ++I L+ +LK GL+PD T+ FV+KA L G +++ I
Sbjct: 69 SFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFN 128
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
GL D YIG +L+ M+ +D A+ +FD+MP
Sbjct: 129 GLECDVYIGTSLIDMFCKMGCLDNARNVFDKMP 161
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y S E+I F M +RP+ +T+ ++ A ++ + H+ I
Sbjct: 570 SWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCI 629
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G S IGN+L+ MYA C ++ +++ F EM
Sbjct: 630 IRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEM 664
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A++ + A +T E + +F M GL+PD +V + IG+G +H
Sbjct: 365 LVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHC 424
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + SD + TL+ MY + +A LF+ M
Sbjct: 425 YAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRM 461
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ +LFN + + + +NTLI + K ++++F+ + +G+ PD+ T + A
Sbjct: 453 YAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACA 512
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ +G +H I K G SD ++ L+ MYA C + + LF
Sbjct: 513 IMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLF 559
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 45/92 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T++ Y K C E ++L +M + ++ + + + + + G +++
Sbjct: 266 SWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYA 325
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
++GL SD + ++ MYA C E+ A+ LF
Sbjct: 326 LQMGLMSDIVVATPIVCMYAKCGELKKARELF 357
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +I +++ E++++F M G D ++ + A + +G S+H +
Sbjct: 167 CWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYV 226
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + + N+L+ MY C ++ A+ +FD M
Sbjct: 227 VRRSICG--VVSNSLIDMYCKCGDVHSAQRVFDRM 259
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM 61
S + +Q Q+ A ++ L H+ +I + ++S + + +F+ +
Sbjct: 20 SEEARLFLQNCNNFKQLKQIHARIIRFRLTHDQLLIRKLCQISSSYGKIDYASLVFDQLN 79
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +F +N +IRAY + +SI LF +M+ G PD TYPFV+ A +I G
Sbjct: 80 DPDIFTWNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRL 139
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMY-AACKEIDFAKALFDEM 160
H L K+G SD Y+ N ++ +Y ++D +FD+M
Sbjct: 140 THGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKM 180
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I Y K I++ LF+ ML +RP+ T ++KA + +G +H
Sbjct: 218 SWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFA 277
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G ++G L+ MY+ C +D A +F M
Sbjct: 278 LKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLM 312
>gi|449434472|ref|XP_004135020.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 575
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MP 62
Q +L+Q ++ Q + + L ++ + +R +L + + +T +F ++ +P
Sbjct: 51 QSHSLLQSCQSVRELFQFHGHLITSGLFNDHFWANRVLLQASEFGDIVYTVLIFRHIKVP 110
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS-- 120
F N +I+AY+ ++ +E++ ++ E L GLRPD+ T+ + A C G G S
Sbjct: 111 NTFCVNRVIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSA---CASFGCGASGR 167
Query: 121 -VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H FK G+ S +GN+L+ MY CK I+ + +FDEM
Sbjct: 168 KCHGQAFKNGVDSVMVLGNSLIHMYGCCKHIELGRKVFDEM 208
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+VMP + ++N +I Y + ++KLF M+ G+R +N T V+ A + +
Sbjct: 237 DVMPERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLN 296
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G SVH +++ + +I L+ MY+ C + A+ +FD +
Sbjct: 297 EGRSVHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRL 340
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH---FTRSLFNNV-M 61
+E IQ SK+ ++ FLK + + ++ ++ + LT L +S + R LF+ +
Sbjct: 15 LEACIQ-SKSLTEAKKIHQHFLKNTSNADSSVLHK--LTRLYLSCNQVVLARRLFDEIPN 71
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +N +IRAYA +I L+ ML G+RP+ TYPFV+KA L I G +
Sbjct: 72 PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
HS GL SD ++ L+ YA C + A+ LF M
Sbjct: 132 HSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ +I Y + C E++ +F M +G+ PD T V+ A + G H +
Sbjct: 240 SWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 299
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +D I N L+ MY+ C +I FA+ +F+ M
Sbjct: 300 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 334
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
F R +FN + + ++N +I Y +E++ LF ++L GL+PD++T+
Sbjct: 326 FAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 377
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSC 79
Q+ A + + H+ I L SL RS+F++ P +N++IRAY ++
Sbjct: 50 QIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
E+++++ M++ GL PD T+ FV+KA L + G H I + GL D +IG
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169
Query: 140 LLRMYAACKEIDFAKALFDEMPE 162
L+ MY+ ++ A+ +FD+MP+
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPK 192
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 55/94 (58%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I AY + + E+I F +M P+++T+ V+ A+ G + H+ I
Sbjct: 601 WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACII 660
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G S+ +GN+L+ MYA C ++D+++ LF+EM
Sbjct: 661 QMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEM 694
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N+LI YA+ +I +F ++ + + PD T VV A + G +H
Sbjct: 496 IVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHG 555
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
LI K+G SD ++ N L+ MYA C + A+ LF++
Sbjct: 556 LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNK 591
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A++ +I A +T E++ LF EM ++P+ +T ++ A L+ +G S+H
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC 454
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + SD G L+ MYA C A F+ M
Sbjct: 455 FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T++ YA C +E ++LFD+M +R + ++ A+ + + + G +H
Sbjct: 296 SWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCA 355
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + SD + L+ MYA C E + AK LF
Sbjct: 356 LQQRIDSDILVATPLMVMYAKCGETEKAKQLF 387
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT----YP 103
L R +F+ MP + A+N +I +++ E++ F M G+ P +++ +P
Sbjct: 180 LKRAREVFDK-MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K S+ I + S+H +F+ S + N L+ +Y+ C ++D A+ +FD+M
Sbjct: 239 GICKLSN----IELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQM 289
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSC 79
Q+ A + + H+ I L SL RS+F++ P +N++IRAY ++
Sbjct: 50 QIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
E+++++ M++ GL PD T+ FV+KA L + G H I + GL D +IG
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169
Query: 140 LLRMYAACKEIDFAKALFDEMPE 162
L+ MY+ ++ A+ +FD+MP+
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPK 192
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 54/94 (57%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I AY + + E+I F +M P+++T+ V+ A+ G + H+ I
Sbjct: 601 WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACII 660
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G S+ +GN+L+ MYA C ++ +++ LF+EM
Sbjct: 661 QMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEM 694
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N+LI YA+ +I +F ++ + + PD T VV A + G +H
Sbjct: 496 IVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHG 555
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
LI K+G SD ++ N L+ MYA C + A+ LF++
Sbjct: 556 LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNK 591
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A++ +I A +T E++ LF EM ++P+ +T ++ A L+ +G S+H
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC 454
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + SD G L+ MYA C A F+ M
Sbjct: 455 FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T++ YA C +E ++LFD+M +R + ++ A+ + + + G +H
Sbjct: 296 SWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCA 355
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + SD + L+ MYA C E + AK LF
Sbjct: 356 LQQRIDSDILVATPLMVMYAKCGETEKAKQLF 387
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT----YP 103
L R +F+ MP + A+N +I +++ E++ F M G+ P +++ +P
Sbjct: 180 LKRAREVFDK-MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K S+ I + S+H +F+ S + N L+ +Y+ C ++D A+ +FD+M
Sbjct: 239 GICKLSN----IELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQM 289
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-----PISLHFTRSLF------ 57
L++ +T + +Q+ A +KT N+ + ++ IL S+ P+ + F R +F
Sbjct: 20 LLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPL-VEFARYVFFTRYAV 78
Query: 58 -----NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
N++ F +N +I++Y+ + + ++ LF ML+ G D ++ ++KA +
Sbjct: 79 QRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARV 138
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ G +H L+ K+ + S+ ++ N L+ MY C +I+FA+ +FD MP
Sbjct: 139 CLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMP 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVV 106
+ R+LF+ MP + A+NT++ YA+ E++++F EM + + L PD T +
Sbjct: 303 IKVARTLFDE-MPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVAL 361
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A Q + S+H+ + G+ + L+ MY+ C I+ A +FD + +
Sbjct: 362 SAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQ 417
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ L +K + N ++++ I L + F R +F+ + + +YN++I Y K+
Sbjct: 146 QIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSG 205
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+ +LFD M L NL + G+G ++ +F+ D N
Sbjct: 206 TIDLARELFDSM---PLEDKNLISWNSMLGGFAQTKDGIGLALE--LFEKMPERDLVSWN 260
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
T++ +A C I+FA +LF+ MP+
Sbjct: 261 TIIGGFAKCGRIEFAHSLFNRMPK 284
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYA 75
Q+ A +KT+L ++ + +SR I L+ + L + S+F+ + P F + LI+ ++
Sbjct: 24 QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFS 83
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTY--PFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
TS +ES+ L+ ML + + P V+KA + L G VH + K L D
Sbjct: 84 DTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFD 143
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMP 161
++GN+++RMY EI+ A+ +FD MP
Sbjct: 144 PFVGNSMVRMYIDFGEIELARRVFDRMP 171
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I AY + C ++++ LF EML GLRPD V+ A + G +H+ +
Sbjct: 209 WTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 268
Query: 127 --KVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
K+ L S +IG+ L+ MY+ C I+ A +F
Sbjct: 269 MNKIEL-SSGFIGSALIDMYSKCGYIENAYHVF 300
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPI--SLHFTRSLFN 58
S I +LI + Q+ A +KT +N ++++ I TS P S+ +F+
Sbjct: 35 SSSILSLIPKCTSLRELKQIQAYTIKTH-QNNPTVLTKLINFCTSNPTIASMDHAHRMFD 93
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ P + +NT+ R YA+ + +I L ++L +GL PD+ T+ ++KA + +
Sbjct: 94 KIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEE 153
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H L K+G+ + Y+ TL+ MY AC ++D A+ +FD++ E
Sbjct: 154 GKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGE 198
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLI 71
K QL L +K + N Y+ I + + + R +F+ + P + AYN +I
Sbjct: 149 KALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAII 208
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKV 128
+ A+ S E++ LF E+ ++GL+P ++T ++ A C L+G +G +H + K
Sbjct: 209 TSCARNSRPNEALALFRELQESGLKPTDVT---MLVALSSCALLGALDLGRWIHEYVKKN 265
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G + L+ MYA C +D A ++F +MP
Sbjct: 266 GFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPR 299
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS---LHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
Q+ A ++ + N +++ + I+ +++ S+F + P F +NT+IR + K
Sbjct: 6 QIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMIRGFGK 65
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ ++ + M + GL D+ T+ F++K Q L+ +G +H K GL+S ++
Sbjct: 66 ANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFV 125
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
NTL+ MY K+I+ ++ LF+E+P
Sbjct: 126 RNTLVHMYGTFKDIEASRQLFEEIP 150
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+R LF + P L A+N +I + E++++F MLK G+ PD T+ ++ A
Sbjct: 142 SRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSA 201
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VHS I +G + N+LL MYA C + A +F+ M
Sbjct: 202 LGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGM 250
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH---FTRSLFNNV-M 61
+E IQ SK+ ++ FLK + + ++ ++ + LT L +S + R LF+ +
Sbjct: 15 LEACIQ-SKSLTEAKKIHQHFLKNTSNADSSVLHK--LTRLYLSCNQVVLARRLFDEIPN 71
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +N +IRAYA +I L+ ML G+RP+ TYPFV+KA L I G +
Sbjct: 72 PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
HS GL SD ++ L+ YA C + A+ LF M
Sbjct: 132 HSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTL 70
+K H L ++ S D+ + + + + + L + R +F+ + + +++ +
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282
Query: 71 IRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
I Y + C E+++LFD+M LK + P +T V++A + + G +H I K+G
Sbjct: 283 IGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG 342
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
D +GNTLL MYA C ID A FDEM
Sbjct: 343 SVLDILLGNTLLSMYAKCGVIDDAIRFFDEM 373
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+N +I + ++++L +M + G+ P++ T V+ + +G G ++H
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHG 234
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +G LL MYA C+ + +A+ +FD M
Sbjct: 235 YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVM 271
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 31/124 (25%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLK-------------------------------TGLR 96
NTL+ YAK ++I+ FDEM +G+
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID 410
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156
PD T V+ A + G H + G +D I N L+ MY+ C +I FA+ +
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 470
Query: 157 FDEM 160
F+ M
Sbjct: 471 FNRM 474
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+ F R +FN + + ++N +I Y +E++ LF ++L GL+PD++T+
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA---S 109
R +F+++ +F +N +I+ YA E++ +++ M +G P+ TYPFV+KA
Sbjct: 74 RKVFDDLSERDVFCWNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAE 133
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
CL G +H + K GL D ++GN + YA CKEI+ ++ +FDEM E
Sbjct: 134 RDCL---KGRIIHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLE 183
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLR-PDNLTYPFVVKAS 109
+R +F+ ++ + ++N+++ Y E++ LF +ML+ G+ PDN T V+ A
Sbjct: 174 SRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAF 233
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ I G +H I K G+ D +G L+ +Y+ C I AKA+FD++P+
Sbjct: 234 AEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVFDQIPD 286
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH---FTRSLFNNV-M 61
+E IQ SK+ ++ FLK + + ++ ++ + LT L +S + R LF+ +
Sbjct: 15 LEACIQ-SKSLTEAKKIHQHFLKNTSNADSSVLHK--LTRLYLSCNQVVLARRLFDEIPN 71
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +N +IRAYA +I L+ ML G+RP+ TYPFV+KA L I G +
Sbjct: 72 PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
HS GL SD ++ L+ YA C + A+ LF M
Sbjct: 132 HSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTL 70
+K H L ++ S D+ + + + + + L + R +F+ + + +++ +
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282
Query: 71 IRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
I Y + C E+++LFD+M LK + P +T V++A + + G +H I K+G
Sbjct: 283 IGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG 342
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
D +GNTLL MYA C ID A FD M
Sbjct: 343 XVLDILLGNTLLSMYAKCGVIDDAIRFFDXM 373
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+N +I + ++++L +M + G+ P++ T V+ + +G G ++H
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHG 234
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +G LL MYA C+ + +A+ +FD M
Sbjct: 235 YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVM 271
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ ++ + + ++ +F M +G+ PD T V+ A + G H +
Sbjct: 380 SFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 439
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +D I N L+ MY+ C +I FA+ +F+ M
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+ F R +FN + + ++N +I Y +E++ LF ++L GL+PD++T+
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517
>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
Length = 1260
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N IR + +ES+ LF EM + G P+N T+PFV KA + +G VH+ +
Sbjct: 625 AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 684
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD ++G + M+ C +D+A +F+ MPE
Sbjct: 685 IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPE 721
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I YA+ E++ LF M+K+G +PD +T ++ + + G + +
Sbjct: 930 SWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARA 989
Query: 126 FKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D I N L+ MY+ C I A+ +FD PE
Sbjct: 990 DIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPE 1027
Score = 38.9 bits (89), Expect = 0.78, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++ +AY+ + ++ L+ ML+ +PD T+ + + + G +HS
Sbjct: 829 SWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHA 888
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G D NT + MY+ ++ A+ LFD M
Sbjct: 889 IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIM 923
Score = 38.9 bits (89), Expect = 0.80, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+H R +F+N + + T+I YA +E++KLF +M+ +P+++T+ V++
Sbjct: 1014 SIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQ 1073
Query: 108 A 108
A
Sbjct: 1074 A 1074
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +A+N +IR T + +I+L+ +M GL+P+N T+PF+ + + + G
Sbjct: 89 PNDYAFNVMIRGLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQI 148
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HSL+ K+G ++D +I ++L+ MYA C ++D A+ +FDE+ E
Sbjct: 149 AHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILE 190
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 22 LPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSC 79
+ AL ++ N+Y S I + L R +F+N+ + +N +I YA+
Sbjct: 250 VEALIGDKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGA 309
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S E++ LF+ M + G+ P+ +T V+ A + +G V + GL D Y+ +
Sbjct: 310 SDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASA 369
Query: 140 LLRMYAACKEIDFAKALFDEMP 161
L+ MYA C +D A +F+ MP
Sbjct: 370 LVDMYAKCGSLDNALRVFENMP 391
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 15 TAHHHHQLP-ALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLI 71
A H Q+ +L LK +++++I I S L R +F+ ++ + ++N++I
Sbjct: 141 VALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMI 200
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
Y K + E+++LF EM + G P +T ++ A + +G V +LI +
Sbjct: 201 SGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKME 260
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ Y + L+ MY C ++ A+ +FD M E
Sbjct: 261 LNSYTASALIDMYGKCGDLMSARRVFDNMAE 291
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 41 FILTSLPISLHFTRSLFNNVM------------PPLFAYNTLIRAYAKTSCSIESIKLFD 88
F + SL + + ++F V+ P +F +NT+ R YA++ +++ +
Sbjct: 60 FTIVSLSAPMSYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYR 119
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
+M+ + + PD TYPF++KA + L + G ++HS+ + G S ++ N+LL +YAAC
Sbjct: 120 QMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG 179
Query: 149 EIDFAKALFDEM 160
+ + A +F+ M
Sbjct: 180 DTESAHNVFELM 191
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A ++I +A E++ LF EM G+ PD T ++ AS + + +G VH
Sbjct: 196 LVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHV 255
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEI 150
+ KVGL + ++ N+LL +YA C I
Sbjct: 256 YLLKVGLRENSHVTNSLLDLYAKCDAI 282
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 83/154 (53%), Gaps = 4/154 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-MPP 63
TL+ K+ + Q+ + +KT L + + +S+ F S +L + LF ++ P
Sbjct: 37 TLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPN 96
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F +NT+IR + +S + +I + ML G+ P++ T+PF++K+ + G +H
Sbjct: 97 QFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHG 156
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ K+GL SD ++ +L+ MYA E+ +A+ +F
Sbjct: 157 HVLKLGLESDPFVHTSLINMYAQNGELGYAELVF 190
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIES 83
+F K+SL + +L L R LF + + ++N +I YA++ E+
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+ F EM + + P+ T V+ A Q + +G V S I GL S+ + N L+ M
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308
Query: 144 YAACKEIDFAKALFDEMPE 162
Y+ C ++D A+ LF+ + E
Sbjct: 309 YSKCGDLDKARDLFEGICE 327
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-MPP 63
TL+ K+ + Q+ + +KT L + + +S+ F S +L + LF ++ P
Sbjct: 37 TLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPN 96
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F +NT+IR + +S + +I + ML G+ P++ T+PF++K+ + G +H
Sbjct: 97 QFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHG 156
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ K+GL SD ++ +L+ MYA E+ +A+ +F +
Sbjct: 157 HVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSK 192
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIES 83
+F K+SL + +L L R LF + + ++N +I YA++ E+
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+ F EM + + P+ T V+ A Q + +G V S I GL S+ + N L+ M
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308
Query: 144 YAACKEIDFAKALFDEMPE 162
Y+ C ++D A+ LF+ + E
Sbjct: 309 YSKCGDLDKARDLFEGICE 327
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRS--LFNNVMPP-LFAYNTLIRAYA 75
Q+ A +KT+L + ++++ I T P + + + LF+ ++ + +N + R YA
Sbjct: 47 QIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYA 106
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+++ + LF E+L +GL PD+ T+ ++KA + G +H K+GL+ + Y
Sbjct: 107 RSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIY 166
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
I TL+ MYA C +++ A+ +FDEM +
Sbjct: 167 ICPTLINMYAECNDMNAARGVFDEMEQ 193
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTL 70
SK L +K L+HN YI I + + ++ R +F+ + P + +YN +
Sbjct: 143 SKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAI 202
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFK 127
I YA++S E++ LF E+ + + P ++T V+ + C L+G +G +H + K
Sbjct: 203 ITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMS---CALLGALDLGKWIHEYVKK 259
Query: 128 VGLHSDKY--IGNTLLRMYAACKEIDFAKALFDEM 160
G DKY + L+ M+A C + A ++F+ M
Sbjct: 260 KGF--DKYVKVNTALIDMFAKCGSLTDAISIFEGM 292
>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 543
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 50 LHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
L+ RSLF+ + F +NT+IRAYA E+++L+ M + G+ +N T+PF
Sbjct: 86 LNCARSLFDGINIRGDNRSSFLWNTMIRAYANAGLCFETLELYMLMRRAGVSSNNYTFPF 145
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ KA L+ G H K SD Y+ L+ MYA C + + +FDEMP
Sbjct: 146 IFKACASNSLLLQGKVAHGDAVKADFDSDVYVKAALVDMYAKCGQFCDGRKIFDEMP 202
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGS 120
+ ++N+++ Y + + E++ LFD+M +G P+++T +V A C +G +GG
Sbjct: 307 VISWNSMLSGYTQNGQASEALFLFDKMRDSGCEPNSVTALIMVAA---CAYLGSRHLGGK 363
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H I + D + N L+ MYA C ++ A +F+++
Sbjct: 364 FHDFILDSKMKIDMNLRNALMDMYAKCGDLKTAVEMFNDV 403
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + + L + +I AY + E++ L +M + GL PD +T V A Q
Sbjct: 195 RKIFDEMPVKDLVCWTAMITAYEQGEKPDEALILLRKMQQHGLFPDEVTMVSVASAIGQL 254
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
SVH+ + + ++ N++L M+ C ++ + +FD M E
Sbjct: 255 WDAKWAQSVHAYAIRRSFLKEIFVANSILAMHTKCGNMEKSCLIFDMMDE 304
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP 63
RQ +TLI +K AH +F+ + +Y + +I SL ++P
Sbjct: 38 RQCKTLIN-AKLAHQQ-----IFVHGFTEMFSYAVGAYIECGASAE---AVSLLQRLIPS 88
Query: 64 ---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+F +N LIR K +++ + +M + G PD+ T+PFV+KA + + G S
Sbjct: 89 HSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGAS 148
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+++ GL S+ +I N+++ MY C +D A +FDE+ E
Sbjct: 149 VHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLE 190
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 49 SLHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLK--TGLRPDNLTYP 103
S RS+F+++ + + +I YA+ + +++KLF ++ K T L+P+ T
Sbjct: 427 SYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLS 486
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEM 160
+ A + + +G +H+ + S+ Y+GN L+ MY+ +ID A+A+FD M
Sbjct: 487 CALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNM 544
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP----PLFAYNTLIR 72
H + A+ L N +I + + + +L +F+ V+ + ++N+++
Sbjct: 145 HGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILA 204
Query: 73 AYAKTSCSIESIKLFDEM---LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
AY + S ++++ M LRPD +T ++ A + G VH + G
Sbjct: 205 AYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNG 264
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L D ++GN L+ MYA C +++ A +F+ + +
Sbjct: 265 LVDDVFVGNALVSMYAKCSKMNEANKVFEGIKK 297
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
+ ++ +I YA+ E++ +F +M GL P+ +T ++ C +G G
Sbjct: 335 VITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSG---CASVGALLYGKQ 391
Query: 121 VHSLIFKVGLH-------SDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H+ + K L+ D + N L+ MYA CK A+++FD +
Sbjct: 392 THAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSI 438
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 13/164 (7%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP---- 63
+L+Q T Q+ LK L +N +++++ TS +LH + + P
Sbjct: 37 SLLQDCNTFSKLTQIHTQILKLGLSNNPLVLTKY--TSTSSNLHAIDYASSFIFSPESDK 94
Query: 64 ----LFAYNTLIRAYAKTS--CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
F +NT+IRAYA ++ +++ ++ ML+ + P+ TYPFV+KA + +
Sbjct: 95 RLYDTFLFNTIIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNL 154
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE-IDFAKALFDEM 160
G SVH + K G +D ++ NT++ MY ++ I+FA+ +FDEM
Sbjct: 155 GKSVHGSVLKFGFDNDVHVQNTMVHMYCCGRDGIEFAREVFDEM 198
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFV 105
+ F R +F+ + P+ +++ +I YA+ ++I LF EM G+ RPD +T V
Sbjct: 187 GIEFAREVFDEMCKRDPV-SWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSV 245
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ A + +G V S I K + + N L+ M+A C ++D A LF M +
Sbjct: 246 LSACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKCGDVDKAIKLFRNMKD 302
>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +FN + + LF ++ +I ++ E + LF M++ G+ PD P V++A
Sbjct: 133 LGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGVLPDEFLLPKVLQA 192
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+C + G +HS++ + G+ K++ N+++ +YA C E+D AK +FD M E
Sbjct: 193 CGKCRDLETGRLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAKKIFDCMDE 246
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
+ P ++ + ++I + + ++ L EM G+ +N+T A + +G
Sbjct: 315 IAPDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSMGL 374
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+HS+ K+ L + +GN+L+ MY C ++ A+ +FD M E
Sbjct: 375 EIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSE 417
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 36 YIISRFILTSLPIS------------LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIE 82
+ + R +++ L +S L +++++FN + ++N+++ +Y CS
Sbjct: 551 FAVRRILVSELSVSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSMLSSYVLHGCSES 610
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
++ LF +M K GL+P+ T+ ++ A ++ G SV S I K
Sbjct: 611 ALDLFYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITK 655
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--HSDKYIGNT 139
E++ + D + + G R +TY ++++ I +G +HS ++GL + + ++
Sbjct: 66 EAVTILDSLAEQGCRVKPITYMNLLQSCIDKDCIFIGKELHS---RIGLVENVNPFVETK 122
Query: 140 LLRMYAACKEIDFAKALFDEM 160
L+ MYA C + A+ +F+EM
Sbjct: 123 LVSMYAKCGLLGMARKVFNEM 143
>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 6 IETLIQLSKTAHH---HHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP 62
+ET L H HH +P L+ ++ ++ ++ + H +
Sbjct: 330 LETCYNLRAIDHGVRVHHLIPPYLLRNNVGISSKLVRLYASCGYAEVAHEVFDRMSKRES 389
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
FA+N+LI YA+ +++ L+ +M + G++PD T+P V+KA + +G ++H
Sbjct: 390 SPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIH 449
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K G D ++ N L+ MYA C +I A+ +FD +P
Sbjct: 450 RDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIP 488
>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 38 ISRFILTSLPIS------LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDE 89
+S IL++L ++ + + R LF+ MP L +YN +IR Y + ++I +F
Sbjct: 47 VSGHILSTLSVTYALCGHIAYARKLFDE-MPQSSLLSYNIVIRMYVRDGLYHDAINVFIR 105
Query: 90 MLKTGLR--PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
M+ G++ PD TYPFV KA+ + I +G +H I + DKY+ N LL MY
Sbjct: 106 MVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNF 165
Query: 148 KEIDFAKALFDEM 160
++ A+ +FD M
Sbjct: 166 GRVEMARNVFDVM 178
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ R++F+ VM + ++NT+I Y + +++ +FD M+ G+ PD+ T ++
Sbjct: 168 VEMARNVFD-VMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLP 226
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +VH L+ + L + N L+ MY C +D A+ +F M
Sbjct: 227 VCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMER 281
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ + +I Y + +++L M G+RP+ +T +V A L + G +H
Sbjct: 284 VITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHG 343
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + SD I +L+ MYA CK ID +F
Sbjct: 344 WAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVF 377
>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]
Length = 1154
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +IRA++ T S S++L+ ML+ G++ N T+PF++KA +G H+
Sbjct: 528 VFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHA 587
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G SD ++ N+L+ MY DF++ +F+ MPE
Sbjct: 588 HVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPE 626
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+ ++I AY + I +++LF +M G+ PD++T ++ A + VH
Sbjct: 727 LVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHG 786
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+I + + + ++ +Y C +++A+ FD M
Sbjct: 787 VITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRM 823
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 52 FTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV--- 106
F+R +F MP + ++++++ AYA E + LF ML G+ P+ + +
Sbjct: 616 FSRQVFER-MPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACI 674
Query: 107 ----KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+A D C ++ GL SD+ + N + MYA C ID A+ F
Sbjct: 675 HREHEADDFC----------RVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFF 719
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT----SLPISLHFTRSLFN------N 59
++ KT + QL K LD +++ + + P SL + R F
Sbjct: 32 LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
LF N+LIR Y+ E+I L+ ML G+ P++ T+PFV+ + G
Sbjct: 92 SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + K+GL D +I N L+ YA C +D +F+ M E
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 52/97 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L YNT++ YA+ + E++ + DEML+ G RPD +T + AS Q + + G H
Sbjct: 298 LVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHG 357
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + GL IGN ++ MY C + + A +FD M
Sbjct: 358 YVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLM 394
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +LI YA+ E++ LF EM++ G+RP ++T V+ A + + +G V + I
Sbjct: 199 SWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI 258
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
++GL +K + N L+ MY C ID AK LFDE
Sbjct: 259 GELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDE 292
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHS 123
+NT+I + S ++I+LF EM G++ D +T + A C +G + VH+
Sbjct: 433 WNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASA---CGYLGAPELAKWVHT 489
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G+ D + L+ M+A C + A +F++M E
Sbjct: 490 YIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTE 528
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IR+Y +++ ++ M G PD TYP V+KAS + + VG +H +
Sbjct: 88 FNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVL 147
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K+GL + Y+GN L+ MY CK + A+ + DE+P
Sbjct: 148 KIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIP 182
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I Y S E++ L+ +M G+ PD ++ V+ A + +G VH
Sbjct: 254 VISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHK 313
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ L + + N L+ MYA C + A+A+F++M
Sbjct: 314 FAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQM 350
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R++FN + + ++ ++I AY K +++ +F EM +GL PD++ + V+ A
Sbjct: 340 LRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAA 399
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ G +L+ + G+ ++ + +ID A +MP
Sbjct: 400 CSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMP 452
>gi|255541023|ref|XP_002511576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550691|gb|EEF52178.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 46 LPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYP 103
L S+ + SLF + P +F YNTLIR A++ +SI F E+ K + L PD+ ++
Sbjct: 51 LSDSIDYALSLFRDTPNPDVFMYNTLIRGLAESDSPQKSIATFLELRKESALSPDSFSFA 110
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
FV+KA+ + G +H +K GL++ ++G TL+ MY C + +A+ +F EM E
Sbjct: 111 FVLKAAAYLRSLRGGIQLHCQAWKYGLNAHLFVGTTLISMYGECGCVGYARQVFGEMHE 169
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I +A C E+ F E+L+ G RP+ ++ V+ A Q G +H I
Sbjct: 236 SWSTMIVGFAHNGCFDEAFGYFRELLRKGTRPNEVSLTGVLSACAQAGAFEFGKILHGFI 295
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL + N LL Y+ C + A+ +F+ MPE
Sbjct: 296 EKAGLLWIISVNNALLDTYSKCGNLGMAQLVFERMPE 332
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKT-SLDHNTYIISRFILTSLPISLHFTRSLFNN--VMP 62
++TL + K+ QL A + + +L +NTY+ ++ L + + V+
Sbjct: 48 LQTLTSI-KSFTKGQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLK 106
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
F +N +IR YA ++++ L+ +M G + D TYPFV+KA + G VH
Sbjct: 107 NSFLWNFMIRGYACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVH 166
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G + D Y+GN+LL MY+ + A+ +FD MP
Sbjct: 167 CEVVITGFNLDIYVGNSLLAMYSKFGNMKMARMVFDRMP 205
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF ++ ++N++I YA+ + ES+++F M+ G +PD +T+ V+ A +Q
Sbjct: 299 ARKLFEHMAWKDTVSWNSMISGYARNRDAFESLRVFCRMVLEGTKPDKITFITVLGACEQ 358
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G SVHS + K G + ++ L+ MYA C + A +F+EMPE
Sbjct: 359 ITAMEFGRSVHSYLSKKGFSATIFVATALIDMYAKCGNLACAHLVFEEMPE 409
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
++ R +F+ MP L ++NT+I Y K E + +F+ M + GL D++T ++
Sbjct: 193 NMKMARMVFDR-MPVRDLTSWNTMISGYLKNGKPREVLAIFNLMKQIGLSVDDMTLIGLL 251
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHS--DKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +H + + HS + ++ N+L+ MY C + A+ LF+ M
Sbjct: 252 CTCAELFAEKQGKEIHGYVVR-NRHSVFNHFLINSLIEMYCKCNSMVDARKLFEHMA 307
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 56/100 (56%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +N +IR +A ++++ + ML G RPD T+P V+K + +G G +
Sbjct: 83 PGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAA 142
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+ + K+GL +D Y N+L+ +YA + A+ +FD MP
Sbjct: 143 HAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMP 182
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I AY E+I LF E+L L PD T VV A I +HS
Sbjct: 389 LVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHS 448
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K+G I N ++ MYA C I ++ +FD+MP
Sbjct: 449 YIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMP 486
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEM---LKTGLRPDNLTYPFVVKASDQCLL- 114
MP + ++NT++ Y ++ F EM L+ G D++ V+ A C L
Sbjct: 181 MPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVG--HDSVG---VIAALAACCLE 235
Query: 115 --IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G +H + GL D +G +L+ MY C + FA+ +F +MP
Sbjct: 236 SALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMP 284
>gi|255555919|ref|XP_002518995.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
gi|223541982|gb|EEF43528.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
Length = 1203
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNNV-MPP 63
+L++ + Q A LK N + S + T S S+ + S+F + P
Sbjct: 897 SLLKRCQNMEEFRQAHAQILKWGFFSNPFCASNLVATCALSHWGSMDYACSIFRQIDQPG 956
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F YNT+I+ Y ++ L+ EML+ ++ DN TYP ++KA I +H
Sbjct: 957 SFEYNTMIKGYVSDFKMENALLLYYEMLEKEVQSDNFTYPALIKACAWLRAIDESMQIHG 1016
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
IFK+G D Y+ N+L+ MY C +I+ + +F ++
Sbjct: 1017 HIFKLGFEEDLYVQNSLINMYGKCGKIELSCDVFKQI 1053
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
F+Y+ +I A S+E++++F EML GL+PD++ Y VVK
Sbjct: 1161 FSYSVMISGLAMHGRSMEALEVFSEMLDEGLQPDDVVY--VVK 1201
>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
Length = 656
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 56/100 (56%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +N +IR +A ++++ + ML G RPD T+P V+K + +G G +
Sbjct: 83 PGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAA 142
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+ + K+GL +D Y N+L+ +YA + A+ +FD MP
Sbjct: 143 HAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMP 182
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I AY E+I LF E+L L PD T VV A I +HS
Sbjct: 389 LVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHS 448
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K+G I N ++ MYA C I ++ +FD+MP
Sbjct: 449 YIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMP 486
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEM---LKTGLRPDNLTYPFVVKASDQCLL- 114
MP + ++NT++ Y ++ F EM L+ G D++ V+ A C L
Sbjct: 181 MPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVG--HDSVG---VIAALAACCLE 235
Query: 115 --IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G +H + GL D +G +L+ MY C + FA+ +F +MP
Sbjct: 236 SALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMP 284
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP 62
S +I T+ S + H Q+ A + +L + I FI T + L + LF +P
Sbjct: 12 STRILTIFTTSLSPLHIPQIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIP 71
Query: 63 P--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA-SDQCLLIGVGG 119
+F N+LIRA++ + + L+ M + + P+N T+PFV+K+ +D L+G G
Sbjct: 72 KPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVG-GQ 130
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
SVH+ + K G SD Y+ NTL+ +YA+C ++ K +FDEM
Sbjct: 131 SVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEM 171
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ LI Y + +++ +F++M G+ P+ +T + A I +G +H
Sbjct: 176 VVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHE 235
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ D +G L+ MY C I A A+F M E
Sbjct: 236 FVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKE 274
>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
Length = 830
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 49 SLHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ R +F+N + + ++ T++ AY + C +++ LF EML+ G+ P+ +TY V+
Sbjct: 159 SVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEMLQEGVAPNEITYVSVL 218
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
A D + G VH LI + GL SD ++GN L++MY C ++ A +FD
Sbjct: 219 NACD----LDAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGSLEDASLVFD 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA---SDQCLLIGVGGS 120
L A+N + AYAK ++++L ++M +RPD +T+ ++ A + L + G
Sbjct: 376 LAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSACTATGSSLGLETGKK 435
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H I + G D +G L+RMYAAC +D AK +F++M
Sbjct: 436 THEEILEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKM 475
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 8/159 (5%)
Query: 8 TLIQLSKTAHHHHQLP------ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV 60
T+ L+ + H LP A + LD N ++ + + L S+ R +F+ +
Sbjct: 10 TVTDLAASLRACHTLPKGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKM 69
Query: 61 MP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
+ ++ AYA+ E+ LF ML G+ PD +T V+ A + + G
Sbjct: 70 ASRDAGLWAPMMAAYARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACSESGSLAEGR 129
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
VH I +G L+RMYA C +D A+ +FD
Sbjct: 130 RVHRRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRVFD 168
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++N LI A+ + + L M G PD++T V+ + L G +
Sbjct: 576 PSVISWNLLIAAHTRLGHPDRAFDLLRAMELQGHNPDSVTLATVINSRASLQLFRKGKII 635
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
H I + G+ D + L+ Y C + A+++F
Sbjct: 636 HDSILEAGMEIDSVVATALVNFYGKCGDFATARSIF 671
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++ T++ AY + E+ F + G PD + ++ A C + H
Sbjct: 480 LISWTTMLGAYTQARLLDEASITFRRIQLEGHTPDRVA---LIAALGACTNLSSARDFHE 536
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I ++G D + N LL +Y+AC ++ A FD + E
Sbjct: 537 RIRQLGWEKDPLVANALLEVYSACGSLEDANETFDGIGE 575
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG--SV 121
L +N++I YA + + +++ F +ML G + D T V+ A + + ++
Sbjct: 273 LLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWKGDKHTLLTVLDACAKSSTLQASSLQTI 332
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H L + GL SD +G L+++ + + AK +FD +
Sbjct: 333 HDLAVESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDSL 371
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
C + G +H+ I GL + ++ N ++ MY CK +D A+ +FD+M
Sbjct: 21 CHTLPKGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKM 69
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT----SLPISLHFTRSLFN------N 59
++ KT + QL K LD +++ + + P SL + R F
Sbjct: 32 LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
LF N+LIR Y+ E+I L+ ML G+ P++ T+PFV+ + G
Sbjct: 92 SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + K+GL D +I N L+ YA C +D +F+ M E
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS--- 120
L YNT++ YA+ + E++ + DEML+ G RPD +T + AS Q + + G
Sbjct: 257 LVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHG 316
Query: 121 --VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+ I K G+ D + L+ M+A C + A +F++M E
Sbjct: 317 YWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTE 360
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I + + CS E+++L+ EM + RPD T+ V++A +G G +HSLIF
Sbjct: 722 WTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIF 781
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VGL SD+ G+ ++ MYA C ++ + +F+EM
Sbjct: 782 HVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEM 815
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+N +I + K C IE+I F M KTG++ T V+ A + G VH+
Sbjct: 314 VVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHA 373
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL+S+ Y+G++L+ MYA C++++ AK +FD + E
Sbjct: 374 QAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDE 412
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSI 81
A +K L+ N Y+ S I + + + + +F+ + L +N ++ YA+ +
Sbjct: 373 AQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYAS 432
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
+ +KLF EM G PD TY ++ A + +G +HS I K + ++ NTL+
Sbjct: 433 KVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLV 492
Query: 142 RMYAACKEIDFAKALFD 158
MYA C ++ A+ F+
Sbjct: 493 DMYAKCGALEEARQQFE 509
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--------LTSLPISLHFTRSLFNNVMPPLFAYNTLI 71
QL + +K + ++N ++ + + L F R+ N ++N +I
Sbjct: 470 RQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDN------VSWNAII 523
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
Y + E+ +F M+ G+ PD ++ ++ + G VH + K GL
Sbjct: 524 VGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQ 583
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ Y G++L+ MY C I+ A+ +F MP
Sbjct: 584 TCLYAGSSLIDMYVKCGAIEAARYVFSCMP 613
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
++ F FN + + A+N+++ Y++ + I F + G+ P+ TY V+
Sbjct: 131 NVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLS 190
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + + I +G VH + K+G + + +L+ MY+ C + A+ +FD
Sbjct: 191 SCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFD 241
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMPP--LFAYNTLIRA 73
Q+ +K+ L Y S I + ++ R +F+ MP + + N +I
Sbjct: 568 EQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFS-CMPSRSVVSMNAIIAG 626
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHS 132
YA+ +E+I LF EM GL P +T+ ++ A + +G +H LI K G L+
Sbjct: 627 YAQNDL-VEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYD 685
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDE 159
++G +LL MY + A LF E
Sbjct: 686 GDFLGVSLLVMYMNSQRKTDADILFSE 712
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++I +AK + ++K+FDEM T +RPD++T+ V+ A + G
Sbjct: 821 VISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGRE--- 877
Query: 124 LIFKVGLHSDKYI 136
IF + +HS K +
Sbjct: 878 -IFDIMVHSYKIV 889
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ +K + N++ I + S SL R +F+ V+ P ++ +I Y +
Sbjct: 203 QVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVG 262
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
E++K+F++M K GL PD + + V+ A C+ +G
Sbjct: 263 LPEEALKVFEDMQKLGLVPDQVAFVTVITA---CVGLG 297
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 54/93 (58%)
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
++ +AK I F E+++ G RPDN T PFV++A + +G +H +++K G
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L D ++ L+ MY C+EI+ A+ LFD+M E
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQE 93
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +++ +I AY +++ LF ML +G+ PD +T ++ A + +G +H
Sbjct: 197 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH 256
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+++K GL D ++ L+ MY C+EI+ A+ LFD+MPE
Sbjct: 257 IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPE 295
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFA 66
+Q+ + HH + K LD + ++ + + + + R LF+ MP L
Sbjct: 248 LQMGRLIHH------IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDK-MPERDLVT 300
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I YA+ + ES+ LFD+M + G+ PD + VV A + + ++ I
Sbjct: 301 WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 360
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ D +G ++ M+A C ++ A+ +FD M E
Sbjct: 361 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 396
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMP-PLFAY 67
+Q+ + HH + K LD + ++ + + + + R LF+ + L +
Sbjct: 46 LQMGRLIHH------IVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 99
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+I YA+ + ES+ LF++M + G+ PD + VV A + + + I +
Sbjct: 100 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 159
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D +G ++ MYA C ++ A+ +FD M E
Sbjct: 160 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 194
>gi|255562790|ref|XP_002522400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538285|gb|EEF39892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 476
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAY 67
L++L K Q+ +KT +D + + S+ + +S+ L + S+FN+ P LF Y
Sbjct: 37 LLKLCKRTSEISQVHGFMIKTGIDQDPFATSKLLASSIQ-DLKYAASIFNHTQNPNLFMY 95
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
NTL+R ++ ++ +F + + D ++ ++KAS + L + G +H ++ +
Sbjct: 96 NTLLRGFSIGDNPKQAFAVFKNLRAQRIELDQFSFITILKASARELAVKAGQGIHGIVAR 155
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G + NTLL +Y+ C I A+ LFDE +
Sbjct: 156 SGYLMFVNVKNTLLHLYSVCGLIGDAQKLFDEFSQ 190
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+ L ++N L+ AY S +I+++ +M + G T V+ A G +
Sbjct: 191 LNDLVSWNALMGAYLHVSQPAMTIEVYGQMFRYGFIMSVATSLSVLSAFADLGDPTGGET 250
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ K+G S+ + L+ MYA ID + +FD + E
Sbjct: 251 IHACCIKIGFCSNLNVVTALIEMYAKTGRIDSGRRIFDGIVE 292
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
LF YN L+ Y++ + ++I LF E+L T L PDN T P V KA + +G +VH
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH 218
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+L K G SD ++GN L+ MY C ++ A +F+ M
Sbjct: 219 ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETM 256
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI A+A+ +S+ LF M+ +G+ PD T ++ A + + G +H +
Sbjct: 469 SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL D++IG +L+ +Y C + K +FD+M
Sbjct: 529 LRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKM 563
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 50/99 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N +I +++ E++ F +ML G++P + V+ A Q + +G VHS
Sbjct: 568 LVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHS 627
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K L D ++ L+ MYA C ++ ++ +FD + E
Sbjct: 628 FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNE 666
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML---KTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
L ++N+++ A ++ E +F +L + GL PD T V+ A + +G
Sbjct: 261 LVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMV 320
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
VH L FK+G+ + + N+L+ MY+ C + A+ALFD
Sbjct: 321 VHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD 358
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 27 LKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIES 83
LK DH+ ++ I+ L + + + LF MP L ++ +I YA++ S E+
Sbjct: 264 LKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEE-MPKTDLIPWSLMIARYAQSDRSKEA 322
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+ LF M +T + P+N T+ V++A + + +G +HS + K GL+S+ ++ N ++ +
Sbjct: 323 LDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDV 382
Query: 144 YAACKEIDFAKALFDEMPE 162
YA C EI+ + LF+E+P+
Sbjct: 383 YAKCGEIENSMKLFEELPD 401
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+I Y + ++ LF ML+ ++P +TY V++AS + G +HSL
Sbjct: 407 WNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTI 466
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + D + N+L+ MYA C I+ A+ FD+M
Sbjct: 467 KTMYNKDTVVANSLIDMYAKCGRINDARLTFDKM 500
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 45 SLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYP 103
S+ ++ R +F+++ + ++ ++ YA+ ES++LF++M G +P+N T
Sbjct: 182 SVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTIS 241
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+K+ VG SVH K D ++G LL +YA EI A+ LF+EMP+
Sbjct: 242 GALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPK 300
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 31/128 (24%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG---------------------------LR 96
LFA N L+ Y +++ ++ KLFDEM +T +
Sbjct: 70 LFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFK 129
Query: 97 PDNLTYPFVVKASDQCL----LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
+ PFV + L L + ++H+ ++K+G H+D ++G L+ Y+ +D
Sbjct: 130 EGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDV 189
Query: 153 AKALFDEM 160
A+ +FD++
Sbjct: 190 ARHVFDDI 197
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ LF+ + + + ++N +I YA+T C E+++LF+EM+K +RPD TY V+ A
Sbjct: 149 AQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAH 208
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I +G VHS + G S+ I N L+ +Y+ C E++ A LF
Sbjct: 209 SGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLF 254
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + S+F + P +NT+IR +A +S + S+ L+ M+ GL P++ T+PF++K
Sbjct: 13 GLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLK 72
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + G +H + K+G D Y+ +L+ MY ++ A +FD
Sbjct: 73 SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFD 123
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T V+ A I +G +H
Sbjct: 262 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHV 321
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ A +F+ M
Sbjct: 322 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 360
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VG 118
P ++ +N++IR + + S+ L+ +M++ G PD+ T+PFV+KA C +I G
Sbjct: 67 PSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKA---CCVIADQDCG 123
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+HS I K G +D Y LL MY +C ++ +FD +P+
Sbjct: 124 KCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPK 167
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LFN MP + ++N++I AY + E++ LF +M +G+ PD T+ V+
Sbjct: 263 LKIARDLFNK-MPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLS 321
Query: 108 -ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ QC L +G +VH+ + K G+ +D + LL MYA E+ A+ +F + +
Sbjct: 322 VCAHQCAL-ALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQK 376
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+N+ + A+ LI Y K + E++K+F++M + P+ +T + A
Sbjct: 161 VFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRD 220
Query: 115 IGVGGSVHSLIFKVGL-------HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G VH I K G +S+ + +L MYA C + A+ LF++MP+
Sbjct: 221 IDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQ 275
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 13 SKTAHHHH-----------------QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTR 54
S A+HHH QL L + L +T + ++ + L + + R
Sbjct: 58 SPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHAR 117
Query: 55 SLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
LF+ MP +F +N LIRAYA+ +++L+ M++ G+ PDN TYP V+KA
Sbjct: 118 RLFDG-MPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAAL 176
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
L + G VH + D ++ ++ MYA C +D A+A+FD
Sbjct: 177 LDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFD 222
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H + GL D + L+ +YAAC ++ A+ LFD MP+
Sbjct: 81 GRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125
>gi|255575930|ref|XP_002528862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531713|gb|EEF33536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
H++ S++ ++ P +FA N +IR ++K+ +ES+ + ML+ +RP+N ++ F+ +
Sbjct: 73 FHYSYSVYQSIKNPSVFASNNMIRCFSKSELPLESVVFYSSMLRRFIRPNNYSFTFLFQG 132
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L G +H + K G D Y+ N L+ + AC ++ +K +F+E P
Sbjct: 133 CGKGLGFIEGVQIHCHVIKFGFCEDVYVRNALIHFFFACCRVECSKQVFEENPR 186
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT+I AY E ++ F M ++ L PD T+ V+ AS Q L+ G V S+I
Sbjct: 223 SWNTMIMAYVHNGKLEEGLECFRRMRESELVPDEATFVTVLSASAQLGLLEHGRLVRSII 282
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + +G LL MYA C I+ + LFD++P+
Sbjct: 283 DALNVTMTSALGTALLDMYAKCGCIEQCRLLFDKLPQ 319
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +IRA++ T S S++L+ ML+ G++ N T+PF++KA +G H+
Sbjct: 65 VFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHA 124
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G SD ++ N+L+ MY DF++ +F+ MPE
Sbjct: 125 HVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPE 163
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R F ++ L A+ ++I AY + I +++LF +M G+ PD++T ++ A
Sbjct: 252 ARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSN 311
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ VH +I + + + ++ +Y C +++A+ FD M
Sbjct: 312 LASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRM 360
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 52 FTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV--- 106
F+R +F MP + ++++++ AYA E + LF ML G+ P+ + +
Sbjct: 153 FSRQVFER-MPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACI 211
Query: 107 ----KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+A D C ++ GL SD+ + N + MYA C ID A+ F
Sbjct: 212 HREHEADDFC----------RVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFF 256
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 26 FLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
F K + +T +I ++ +L + R F+ + L +++T+I Y E++
Sbjct: 329 FFKNHIALDTAVIDLYVKCG---NLEYARKCFDRMSARNLISWSTMISGYGMHGHGREAL 385
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI---FKVGLHSDKYIGNTLL 141
LFD+M K ++PD++ + V+ A LI G + F V ++ Y ++
Sbjct: 386 CLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYA--CMV 442
Query: 142 RMYAACKEIDFAKALFDEMP 161
+ + A+A + MP
Sbjct: 443 DLLGRAGRLSEAQAFIERMP 462
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA-SDQCLLIGVGGS 120
P + +N +I+ ++K C E ++L+ MLK G+ PD+ T+PF++ + G
Sbjct: 97 PDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK 156
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+H + K GL S+ Y+ N L++MY+ C +D A+ +FD
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFD 194
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L R+ F+ MP ++ +I Y + C ES+++F EM G+ PD T V+
Sbjct: 317 NLKLARTYFDQ-MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + +G + + I K + +D +GN L+ MY C + A+ +F +M +
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQ 431
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESI 84
+K L N Y+ + + + SL + R +F+ +F++N +I Y + ESI
Sbjct: 162 VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESI 221
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+L EM + + P ++T V+ A + + VH + + + N L+ Y
Sbjct: 222 ELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAY 281
Query: 145 AACKEIDFAKALFDEM 160
AAC E+D A +F M
Sbjct: 282 AACGEMDIAVRIFRSM 297
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA-SDQCLLIGVGGS 120
P + +N +I+ ++K C E ++L+ MLK G+ PD+ T+PF++ + G
Sbjct: 97 PDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK 156
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+H + K GL S+ Y+ N L++MY+ C +D A+ +FD
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFD 194
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L R+ F+ MP ++ +I Y + C ES+++F EM G+ PD T V+
Sbjct: 317 NLKLARTYFDQ-MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + +G + + I K + +D +GN L+ MY C + A+ +F +M +
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQ 431
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESI 84
+K L N Y+ + + + SL + R +F+ +F++N +I Y + ESI
Sbjct: 162 VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESI 221
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+L EM + + P ++T V+ A + + VH + + + N L+ Y
Sbjct: 222 ELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAY 281
Query: 145 AACKEIDFAKALFDEM 160
AAC E+D A +F M
Sbjct: 282 AACGEMDIAVRIFRSM 297
>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 53 TRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
T ++ ++++ PL +N LI +Y E++ + EM+ G+RPDN TYP V+KA +
Sbjct: 97 TITVNSDIVNPL-PWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEK 155
Query: 113 LLIGVGGSVHSLIFKV-GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L + G VH I G + Y+ N+L+ MY E+D A+ LF++MPE
Sbjct: 156 LDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPE 206
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N+++ Y S E+ LF EML +G+ P+ +T ++ + + G H
Sbjct: 345 LTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHC 404
Query: 124 LIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + G + N+L+ MYA ++ AK +FD +
Sbjct: 405 YIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSL 442
>gi|414864687|tpg|DAA43244.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 658
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +N +IR +A ++++ + ML RPD T+P VVK + +G G +
Sbjct: 85 PGAFLHNVMIRGFADAGLPLDALAAYRAMLAASARPDRFTFPVVVKCCTRAGALGEGRAA 144
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+ + K+GL +D Y N+L+ +YA + A+ +FD MP
Sbjct: 145 HAAVIKLGLGADMYTANSLVALYAKLGLVGDAERVFDGMP 184
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHS 123
+N +I AY E+I LF E+L L PD T VV A +L+G +HS
Sbjct: 394 WNNMIAAYIYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAF---VLLGSLRQCRQMHS 450
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K+G I N ++ MYA C +I ++ +FD+MP
Sbjct: 451 YIIKLGYGDSTLIMNAVMHMYARCGDIVASREIFDKMP 488
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLL--- 114
MP + ++NT++ Y ++ F +M +R D + V+ A C L
Sbjct: 183 MPARDIVSWNTMVDGYVSNGMGALALACFRDMNDALRVRHDGVG---VIAALAACCLESA 239
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H + GL D +G +L+ MY C + +A+ +F M
Sbjct: 240 LAQGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVLYAENVFATM 285
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSC 79
Q+ A +++ + N ++I +F N+ P F +NT+IR + K++
Sbjct: 70 QIHACIVQSGFEQNLFVI-----------------VFENIECPDEFLWNTMIRGFGKSNE 112
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
+ + + M + GL DN T+ F++K Q + +G +H + K G S ++ NT
Sbjct: 113 PQRAFEYYKRMQEEGLMADNFTFSFLIKVCGQLGSVLLGKQMHCSVLKYGFESHVFVRNT 172
Query: 140 LLRMYAACKEIDFAKALFDEMP 161
L+ MY K+ + ++ LF+E+P
Sbjct: 173 LIHMYGIFKDFEISRQLFEEIP 194
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+R LF + P L A+NT+I Y E++ +F MLK + PD T ++ A
Sbjct: 186 SRQLFEEIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSA 245
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +HS I GL I N+++ MYA C ++ A F++M +
Sbjct: 246 LGELDIGRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAFNKMSQ 296
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
TR L +N P F +N +IR+Y + +++++ ML+ G+ PD T P V+KA Q
Sbjct: 52 LTRFLESN--PASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQ 109
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I +G VHS K+GL S++Y + + +Y + D A +FDE E
Sbjct: 110 SFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHE 160
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAY 67
IQL + H + +K L N Y S FI L +F+ N P L ++
Sbjct: 113 IQLGQQVHSYG------IKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSW 166
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N LI ++ ++++I +F +M + G PD +T V+ A + + +H +F+
Sbjct: 167 NALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVFQ 226
Query: 128 VGLHSDKYI--GNTLLRMYAACKEIDFAKALFDEMPE 162
+ I N+L+ MY C +D A +F M +
Sbjct: 227 AKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMED 263
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMPP-LFAYNTLIRAYAKT 77
A +KT L + Y +S+ +L +S HF S+F+ + P L +NT+ R +A +
Sbjct: 9 AQMIKTGLHNTNYALSK-LLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHALS 67
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S + ++KL+ M+ GL PD+ T+PF++K+ + + G +H + K+G D Y+
Sbjct: 68 SDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVH 127
Query: 138 NTLLRMYAACKEIDFAKALFD 158
+L+ MYA ++ A+ +FD
Sbjct: 128 TSLISMYAQNGRLEDARKVFD 148
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASD 110
+ LF+ + + ++N +I Y +T E+++LF EM+ T +RPD T VV A
Sbjct: 174 AQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACA 233
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
Q I +G VHS I G S+ I N L+ +Y+ E++ A LFD
Sbjct: 234 QSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFD 281
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 288 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 347
Query: 124 LIFK--VGLHSD-KYIGNTLLRMYAACKEIDFAKALFD 158
I K G+ ++ + +L+ MYA C +ID A+ +FD
Sbjct: 348 YINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFD 385
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ A+ L+T ++++ + + I + + R +F+ + P +F +NTL + Y +
Sbjct: 29 KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
ES+ L+ +M G+RPD TYPFVVKA Q G ++H+ + K G +
Sbjct: 89 LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVAT 148
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY E+ A+ LF+ M
Sbjct: 149 ELVMMYMKFGELSSAEFLFESM 170
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF + + +++T+I YA S E++ LF M GLRP+ +T+ V+ A
Sbjct: 264 ARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSH 323
Query: 112 CLLIGVGGSVHSLIFK 127
L+ G SL+ +
Sbjct: 324 AGLVNEGKRYFSLMVQ 339
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL-TSLPI--SLHFTRSLFNNVMPP-L 64
L+Q ++ H Q+ A + L N +++ +L + P S+ + + V P L
Sbjct: 22 LLQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCL 81
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
YN +I+A AK + + LF E+ K GL PDN T P V KA + G VH
Sbjct: 82 VMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGY 141
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G D + N+++ MY A +++ AK +FDE+PE
Sbjct: 142 VVKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPE 177
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R LF + + + + +I Y + + E++KLF +M LRPDN ++K
Sbjct: 296 SLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLK 355
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + G +H I + + D+ +G L+ +YA C ++ A +F EM E
Sbjct: 356 GCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKE 410
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLI---GVGGSV 121
++N LI +Y ++I +F M + + L+ D T VV C ++ VG +
Sbjct: 182 SWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEAT---VVSTLSACSVLRNQEVGEEI 238
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H + L IGN LL MY C +D A+A+FDEM
Sbjct: 239 HRYV-DAELEMTTKIGNALLDMYCKCGCVDKARAIFDEM 276
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
TR L +N P F +N +IR+Y + +++++ ML+ G+ PD T P V+KA Q
Sbjct: 52 LTRFLESN--PASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQ 109
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I +G VHS K+GL S++Y + + +Y + D A +FDE E
Sbjct: 110 SFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHE 160
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAY 67
IQL + H + +K L N Y S FI L +F+ N P L ++
Sbjct: 113 IQLGQQVHSYG------IKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSW 166
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N LI ++ ++++I +F +M + G PD +T V+ A + + +H +F+
Sbjct: 167 NALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVFQ 226
Query: 128 VGLHSDKYI--GNTLLRMYAACKEIDFAKALFDEMPE 162
+ I N+L+ MY C +D A +F M +
Sbjct: 227 AKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMED 263
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 6/126 (4%)
Query: 43 LTSLPISLHF---TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LR 96
L +L +S H + +F+N+ P + +N L+ Y K +E+++LF+++L L+
Sbjct: 44 LINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLK 103
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156
PD+ TYP V+KA +G +H+ + K GL D +G++L+ MYA C + A L
Sbjct: 104 PDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWL 163
Query: 157 FDEMPE 162
F+EMPE
Sbjct: 164 FNEMPE 169
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y E++ LF EM K+ + PD +T+ V+ A Q + G +H+LI
Sbjct: 376 SWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLI 435
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L +++ + LL MYA C +D A ++F +P+
Sbjct: 436 IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 56 LFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
LFN MP + +NT+I Y ++ E+++ F M + G P+++T + + + L
Sbjct: 163 LFNE-MPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLL 221
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H + G D +I + L+ MY C ++ A +F++MP+
Sbjct: 222 DLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPK 270
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + A+N++I Y SI I+LF M G++P T ++ + + G
Sbjct: 268 MPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG 327
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + + SD +I ++L+ +Y C +++ A+ +F +P+
Sbjct: 328 KFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPK 371
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP + ++ +LI YA+ E++ L ML+ +P+ T+ ++KA+
Sbjct: 118 ARRVFDG-MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAG 176
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+G +H+L K H D Y+G+ LL MYA C +D A A+FD++
Sbjct: 177 ASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQL 226
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +A+ ++ +F EM + G + TY V A + G VH+ +
Sbjct: 233 SWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHM 292
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G ++GNT+L MYA + A+ +FD +
Sbjct: 293 IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRV 327
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLH-FTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A + L+ +++++ + LT L + + + R +F V P F + LIR YA
Sbjct: 57 QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYAL 116
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS-LIFKVGLHSDKY 135
+ES+ L++ M + G+ P + T+ ++KA L + +G VH+ I G SD Y
Sbjct: 117 QGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLY 176
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+GNTL+ MY C + +FDEM
Sbjct: 177 VGNTLIDMYVKCGCLGCGHRVFDEM 201
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 39/62 (62%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+++Y+++I +A + +++LFDEMLKT ++P+ +T+ V+ A ++ G + +
Sbjct: 340 VYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFA 399
Query: 124 LI 125
++
Sbjct: 400 MM 401
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 17/157 (10%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSL--PI-SLHFTRSLF-NNVMPPLFAYNTLIRAYAK 76
Q+ A+ K L + ++ I S P+ +L SLF M F NT+IRA+A
Sbjct: 23 QVQAIITKAGLHSHLPFTAKLIFFSALSPMGNLSHAHSLFLQTSMHNSFICNTMIRAFAN 82
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS-------------DQCLLIGVGGSVHS 123
+S ++++ +++ M T + D+ TY FV+KA D+ ++I GG VH
Sbjct: 83 SSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACSRAHKFAQEFVKCDEFIIISKGGEVHC 142
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+GL D I N+LL MY+ C + A+ LFDE+
Sbjct: 143 TVLKLGLDQDPSIQNSLLCMYSQCGLVHVAQHLFDEI 179
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 28 KTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIK 85
K + NT +I R+I + R +F +MP A +N+LI ++
Sbjct: 213 KNVVSWNT-VIGRYIRLG---DIEGARRVFQ-IMPQRDAVSWNSLIAGCVSVKDYEGAMG 267
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
LF EM +RP +T V+ A + + +G +H + G + Y+GN LL MY+
Sbjct: 268 LFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYS 327
Query: 146 ACKEIDFAKALFDEM 160
C +++ A +F+ M
Sbjct: 328 KCGKLNSAWEVFNGM 342
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 57/95 (60%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N++IR Y ++ + S+ ++ +M K G+ PD+ T+P V+K+ Q +G ++H I +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G S+ Y+ L+ MY C + A+ +FDE+P+
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPD 205
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
++ + N Y+ + + + S+ R +F+ + + ++N LI Y + I
Sbjct: 169 IQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVI 228
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+F EM G +P +T V+ A + G + I L + ++G L+ MY
Sbjct: 229 DVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMY 288
Query: 145 AACKEIDFAKALFDEM 160
A C +D A+ +F M
Sbjct: 289 AKCGVVDEAEKIFKAM 304
>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 677
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 38 ISRFILTSLPIS------LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDE 89
+S IL++L ++ + + R LF MP L +YN +IR Y + ++I +F
Sbjct: 47 VSGHILSTLSVTYALCGHITYARKLFEE-MPQSSLLSYNIVIRMYVREGLYHDAISVFIR 105
Query: 90 MLKTGLR--PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
M+ G++ PD TYPFV KA+ + + +G VH I + DKY+ N LL MY
Sbjct: 106 MVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNF 165
Query: 148 KEIDFAKALFDEM 160
+++ A+ +FD M
Sbjct: 166 GKVEMARDVFDVM 178
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 48/97 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NT+I Y + +++ +FD M+ + D+ T ++ + +G +VH
Sbjct: 183 VISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHK 242
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L+ + L + N L+ MY C +D A+ +FD M
Sbjct: 243 LVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRM 279
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ + +I Y + +++L M G+RP+ +T +V L + G +H
Sbjct: 284 VITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHG 343
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ ++SD I +L+ MYA CK +D +F
Sbjct: 344 WAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVF 377
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAK 76
+ HQ P+L +K ++ + P TR +F+ + + YN +IR+Y
Sbjct: 48 NSHQNPSLGIK--------LMRSYAACGEP---GLTRKVFDEMSDRNVVFYNVMIRSYVN 96
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ + +F EM+ G RPDN TYP V+KA + G +H + KVGL + ++
Sbjct: 97 NHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFV 156
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
GN L+ MY C + A+ +FDEM
Sbjct: 157 GNGLIAMYGKCGCLFEARRVFDEM 180
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 44 TSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYP 103
TS L+ + N L ++N +IR Y K S +++ L+ +M K + PD +T+
Sbjct: 233 TSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFA 292
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+ A + +G +H + K L + + N+L+ MYA C +D AK +FD M
Sbjct: 293 SVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRM 349
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ + KA DQ I +H++IF + H + +G L+R YAAC E + +FDEM
Sbjct: 20 SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEM 79
Query: 161 PE 162
+
Sbjct: 80 SD 81
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F R F +V ++ +LI AY T ++ LF EML +G PD++ + ++ A
Sbjct: 346 FDRMKFRDVA----SWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSH 401
Query: 112 CLLIGVG 118
L+ G
Sbjct: 402 SGLLDEG 408
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA-SDQCLLIGVGGS 120
P +F N+LIRA++ + + L+ M + + P+N T+PFV+K+ +D L+G G S
Sbjct: 73 PHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVG-GQS 131
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH+ + K G SD Y+ NTL+ +YA+C ++ K +FDEM
Sbjct: 132 VHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEM 171
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ LI Y + +++ +F++M G+ P+ +T + A I +G +H
Sbjct: 176 VVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHE 235
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ D +G L+ MY C I A A+F M E
Sbjct: 236 FVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKE 274
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT- 93
T II+ + + P F + LF +N +I +Y++ E ++ F EM+ T
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALRS--KNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
L PD+ TYP V+KA +G+G +VH L+ K GL D ++GN L+ Y + A
Sbjct: 182 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 241
Query: 154 KALFDEMPE 162
LFD MPE
Sbjct: 242 LQLFDIMPE 250
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 8 TLIQLSKTAHHHHQLPAL------FLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV 60
T++ H LP+L LK +N + + F+ + SL + + +F+ +
Sbjct: 397 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 456
Query: 61 MPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
+ ++N LI +A+++ S+ +M +GL PD+ T ++ A + + +G
Sbjct: 457 RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 516
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH I + L D ++ ++L +Y C E+ +ALFD M +
Sbjct: 517 EVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT----GLRPDNLTYPFVVKASDQC 112
++MP L ++N++IR ++ S ES L EM++ PD T V+ +
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 305
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
IG+G VH K+ L + + N L+ MY+ C I A+ +F
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 350
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA-Y 67
++L + AH A LK L+ + +I I + + S+ + +FN + A +
Sbjct: 613 LRLGREAH------AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 666
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
N +I Y + E+IKLF+EM +TG PD+LT+ V+ A + LI G
Sbjct: 667 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEG 717
>gi|297735091|emb|CBI17453.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLH-FTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A + L+ +++++ + LT L + + + R +F V P F + LIR YA
Sbjct: 57 QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYAL 116
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS-LIFKVGLHSDKY 135
+ES+ L++ M + G+ P + T+ ++KA L + +G VH+ I G SD Y
Sbjct: 117 QGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLY 176
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+GNTL+ MY C + +FDEM
Sbjct: 177 VGNTLIDMYVKCGCLGCGHRVFDEM 201
>gi|414868050|tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLI 71
++ +H +L A +K ++ N I S + H + MP A+ +I
Sbjct: 156 QSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMI 215
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
Y ++E++K DEML G+ P+ TY +KA + + G +H ++ K
Sbjct: 216 SGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVNKTQAF 275
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S+ ++G +L+ MY C ++D A+ +FD MPE
Sbjct: 276 SNVFVGCSLIDMYMRCGKVDEARRVFDAMPE 306
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I AY + S +++++F M+ G RP+ T +KA + + G +H
Sbjct: 6 VISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHG 65
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K D ++G+ L+ MYA C E+ A+ +FD+MP
Sbjct: 66 AIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMP 103
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I YA++ C E++ LF +M + ++LT ++ A I G +H+ I
Sbjct: 110 WTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQII 169
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + IG+TL+ Y E +A + + MP+
Sbjct: 170 KNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPD 205
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 10/168 (5%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNT--YIISRFILTSL--PIS-LHFTRSLFN 58
+QI +LIQ H Q+ A L L T +++S+ + S P+ L++ R +F
Sbjct: 129 KQIASLIQKCPNLHFLRQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYARKIFA 188
Query: 59 NV-MPPLFAYNTLIR--AYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLL 114
+ P +F YNT+IR +YAK S E L+ M+ G R + T FV+KA +
Sbjct: 189 QIPNPGIFPYNTIIRGCSYAKNP-SREPYFLYKSMVTRGFPRANTFTMAFVLKACASIMA 247
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ I + G + Y+ ++L+ +Y C+EI AK +FDE+ E
Sbjct: 248 FEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITE 295
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKT 77
Q+ A L++ N Y+ S + L + + +F+ + L ++ +I YA+
Sbjct: 252 RQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYARV 311
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E++ +F EM + G+ PD ++ V+ A + +G +H+ I K +H D +
Sbjct: 312 GMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELN 371
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
L+ MYA C I+ AK +FD MP
Sbjct: 372 TALVNMYAKCGCIEKAKEIFDYMP 395
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 39 SRFILTSLPI------SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEML 91
SR +LT L S+ +TR LF +V P F +N+LI+A +K S++++ + ML
Sbjct: 41 SRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRML 100
Query: 92 KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
+ + P T+ V+KA L+ +G VHS +F G SD ++ L+ YA
Sbjct: 101 LSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPR 160
Query: 152 FAKALFDEMPE 162
A+ +FDEMP+
Sbjct: 161 VARKVFDEMPQ 171
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + A+N++I Y + + E++++F++M ++ + PD+ T+ V+ A Q
Sbjct: 163 RKVFDE-MPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQ 221
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I G+ + + +L+ M++ C ++ A+A+F M E
Sbjct: 222 LGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIE 272
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI---LTSLPISLHFTRSLFNNVM 61
Q+ +LI+ H Q+ A ++TSL N +I +F+ S + ++ +F+ +M
Sbjct: 70 QLISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIM 129
Query: 62 PPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG--VG 118
P + YN +IRAY+ + + L+ EM + G+ P+ L+ FV+K+ C+ I +G
Sbjct: 130 KPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKS---CIRISSLMG 186
Query: 119 G-SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ I + G SD + TL+ +Y+ C + + A +FDE+P+
Sbjct: 187 GLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQ 231
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT--GLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
++N LI + +++++FD M T G PD++T +++A + G VH+
Sbjct: 236 SWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHN 295
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + G + N+L+ MY+ C ++ A ++F M E
Sbjct: 296 YIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDE 334
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +A+N +IR T +I+ + +M G+RP+N TYPFV A L++ G
Sbjct: 88 PNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQC 147
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HS + K GL +D ++ ++L+ MY+ C E+ A+ +FDE+ E
Sbjct: 148 AHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISE 189
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 22 LPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSC 79
+ ++ +D N+++ S I + L R +F+ V + +N +I YA+
Sbjct: 249 IEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGV 308
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S E+I LF M ++G+ PD +T V+ A + G + + + GL +D Y+
Sbjct: 309 SDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTA 368
Query: 140 LLRMYAACKEIDFAKALFDEMPE 162
L+ MYA C +D A +F++MP+
Sbjct: 369 LIDMYAKCGSLDDALRVFEDMPQ 391
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + L ++N++I Y++ + +++ LF EM G PD +T ++ A
Sbjct: 177 LGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGA 236
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G+G + + + + + ++G+ L+ MY C ++ A+ +FD M
Sbjct: 237 CGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRM 288
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTS--LPISLHFTRSLFNNV-MPPLFAYNTLIRAY 74
H Q+ A L++ LD +T ++ + +++S L SL + S+FN + P N +R
Sbjct: 38 HLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLREL 97
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+++ +++ +++ M GL D ++P ++KA + + G +H L K+G SD
Sbjct: 98 SRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDP 157
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
++ L+RMYAAC I A+ +FD+M
Sbjct: 158 FVQTGLVRMYAACGRIAEARLMFDKM 183
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 53 TRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+FN V L ++ +I YA++ E++ LF+EM G++PD +T V+ A
Sbjct: 308 ARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +H + K G I N L+ MYA C ++ A+ +FD+MP
Sbjct: 368 LGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMP 417
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I Y ++ +++ LF+EM + PD + V+ A + + G +H I
Sbjct: 191 WSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIM 250
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + D ++ + L+ MYA+C +D A LF++M
Sbjct: 251 ENNIVVDPHLQSALVTMYASCGSMDLALNLFEKM 284
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPL-FA 66
L+Q K H Q+ A +++ L ++ + + I L S + + LF + P F
Sbjct: 33 LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IRA S +++ L+ M+ G+ D T+PFV+KA L I +G VH +
Sbjct: 93 WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G D ++ N L+ Y C FA +F++M
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I A+ S+E+++ F + K GL P ++P +K+ + G H
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
F G +D ++ + L+ MY+ C ++ A+ALFDE+P
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP 2077
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N++I YA++ S E++++F M++ G+R + +T V+ A + G +H
Sbjct: 2192 SWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQ 2251
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+ L + +G +++ MY C ++ AK FD M E
Sbjct: 2252 VIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKE 2289
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + + ++ +I Y + E+++LF M + P+ T ++KA
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ ++ +G +H K + Y+G L+ MY+ C I A +F+ MP
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP 319
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK--------TGLRPDNL 100
L R+LF+ + + + ++ ++I Y + + ++ LF + L+ + D++
Sbjct: 2066 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 2125
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+ A + G+ VH + K G +GNTL+ YA C + +K +FD M
Sbjct: 2126 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 2185
Query: 161 PE 162
E
Sbjct: 2186 EE 2187
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 5/157 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVMPP 63
+L++ K+ Q+ + + T L + + SR I ++ + T LFN P
Sbjct: 11 SLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPN 70
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
F++N IR + + E++ L+ +L+ G +PDN TYP + KA + LI +G +
Sbjct: 71 TFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEIL 130
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ +G SD ++ N ++ + +C ++D A+ +FD+
Sbjct: 131 GHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDK 167
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + + L ++N++I Y + + E++ + EM G++PD +T VV +
Sbjct: 158 LDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSS 217
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q + +G H I + GL + N L+ MY C ++ A+ LFD M
Sbjct: 218 CAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSM 269
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L LF+ MP + +N +I Y + E++ LF+EM + PD +T +
Sbjct: 290 LDMAWKLFDE-MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLS 348
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A Q + VG +H I K L + +G L+ MYA C +I A +F E+P
Sbjct: 349 ACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP 402
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVMPP-LFAYN 68
KT QL A+F+KT + + I +S I + R++F + P F +N
Sbjct: 30 KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDID--YARAVFRQMPEPNCFCWN 87
Query: 69 TLIRAYAKTS---CSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
T++R A+T+ E++ LF ML G ++P+ T+P V+KA + + G +H L
Sbjct: 88 TILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I K G H D+++ + L+RMY C ++ A +LF
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
++LF+ MP + ++N +I YA+ IE+I LF EM + + P+ +T V+ A
Sbjct: 223 AKNLFDE-MPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIA 281
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + +G +H K + D +G+ L+ MY+ C ID A +F+ +P+
Sbjct: 282 RIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPK 333
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH---------- 51
I R+ +L+Q SKT + Q+ A L+ +L+ N + ++FI T I+L
Sbjct: 151 IERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGI 210
Query: 52 -FTRSLFNNV--MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVK 107
R +F++ F N++I+AY ES L+ ++ + T PD+ T+ + K
Sbjct: 211 VHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAK 270
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + I G +HS + VG D Y L+ MYA ++D A+ LFDEM
Sbjct: 271 SCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEM 323
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFV 105
+L RSLF+ MP LF++N +I Y + E++KLF EM T L PD +T V
Sbjct: 405 NLDSARSLFD-AMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSV 463
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ A + +GG VH + + L +G L+ MYA C EI ++ +FD MPE
Sbjct: 464 LPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPE 520
>gi|224064796|ref|XP_002301563.1| predicted protein [Populus trichocarpa]
gi|222843289|gb|EEE80836.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFA 66
L+Q + +H + ++ +L N ++ + I L S L + LF+ V P F
Sbjct: 46 LLQNCTSFNHLKLVHGKIIRNALSANQLLVRKLIHLCSSYGRLDYAALLFHQVQEPHTFT 105
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N LIR Y S++++ L++ M++ G PD T+PFVVKA I G VH L
Sbjct: 106 WNFLIRTYTIHGYSMKALLLYNLMIRRGFPPDKFTFPFVVKACLASGSIRKGKEVHGLAI 165
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAK 154
K G D ++ NTL+ +Y +C + + +
Sbjct: 166 KTGFSKDMFLYNTLMDLYFSCGDEGYGR 193
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 75/129 (58%), Gaps = 11/129 (8%)
Query: 39 SRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAK-----TSCSIESIKLFDEMLKT 93
+R I ++ P +LHF+ + F +NTLIRA+ + T + I +F M
Sbjct: 5 TRLISSTHP-TLHFSHPTLES-----FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFH 58
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
G++PD T+PF++++ L+ +G SVH+ I + GL D ++ +L+ MY++C + FA
Sbjct: 59 GVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFA 118
Query: 154 KALFDEMPE 162
+ +FDE+P+
Sbjct: 119 RQVFDEIPQ 127
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L + + +F+ + P F YN+LIR Y+ + I+++ LF M+ +GL P+ T PFV+KA
Sbjct: 164 LQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKA 223
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH L K+G+ S ++ N L+ +Y C I A+ LFD++ +
Sbjct: 224 CGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITD 277
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ R +F+ MP + ++N++I Y + E++ LF++M + + PD T ++
Sbjct: 342 SIEVARQIFDQ-MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSIL 400
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A Q + +G +H+ I + N+L+ MYA C + A +F EMP
Sbjct: 401 AACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP 455
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L ++N +I A A C +E+IKLF+EM G PD +T ++ A L+ +G
Sbjct: 459 LVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 513
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A + +L T + + F S +L + +FN + +P F YN+LIR Y
Sbjct: 6 QIHAQIILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLIRGYCN 65
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
++ I+S+ L+ +++ +GL P+ T+PFV+KA + VH K+G S +
Sbjct: 66 SNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFASLICV 125
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N L+ Y AC I +A+ +FD+M E
Sbjct: 126 QNGLINAYIACGFIRYARKMFDDMSE 151
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
N YI FI + R +F+++ L ++N++I Y+K E LF EM +
Sbjct: 131 NAYIACGFI--------RYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMRE 182
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
G D+ T ++ + I +G VH I G+ D N L+ MYA C +
Sbjct: 183 IGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVL 242
Query: 153 AKALFDEMPE 162
A+ +F +MP
Sbjct: 243 AERVFQQMPN 252
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ + R F+ MP + ++N++I +Y + E++ LF EM + P+ T V+
Sbjct: 271 VEYARKSFDQ-MPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFRVVPNEATLLSVLS 329
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A Q + +G +H+ I + N+L+ MYA C + A +F+EMP
Sbjct: 330 ACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPN 384
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M++ G++ D+ T+PFV+K I G VH ++FK+G +D Y+GNTLL +Y C
Sbjct: 1 MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60
Query: 150 IDFAKALFDEMPE 162
++ A+ LFDEMPE
Sbjct: 61 LNDARRLFDEMPE 73
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
LH R++FN +YN LI Y++T ++S+ LF EM G +PD +++ V+ A
Sbjct: 365 LHSARNVFNTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISAC 424
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VH + + L+S ++ N+LL Y C ID A LF+++
Sbjct: 425 ANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQI 475
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 56/95 (58%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I YA +E+I+ +M +TG P+ +T+ V+ A + +G G +H+
Sbjct: 279 IVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHA 338
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ ++GL SD ++ N+L+ MYA C + A+ +F+
Sbjct: 339 MGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN 373
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 44/95 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I A +++ F M+ G +P+++T ++ + G +H
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 239
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G +D +I N+L+ MYA A +F +
Sbjct: 240 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNL 274
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVM- 61
+QI+TLI ++ T +H Q+ + L H+T++++ + +L ++ LF++
Sbjct: 14 QQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQF 73
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P +F YN+LI + E++ LF + K GL T+P V+KA + +G +
Sbjct: 74 PNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDL 133
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HSL+ K G + D +LL +Y+ ++ A LFDE+P+
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPD 174
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
L +L +K +H+ ++ + + S L+ LF+ + + + L Y +
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGLHSDKY 135
E+I LF +M++ G++PD+ F+V+ C+ +G G + + ++ + + +
Sbjct: 192 RHREAIDLFKKMVEMGVKPDSY---FIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSF 248
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ TL+ +YA C +++ A+++FD M E
Sbjct: 249 VRTTLVNLYAKCGKMEKARSVFDSMVE 275
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 53 TRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F++ V + ++T+I+ YA S E I+LF +ML+ L+PD + + +
Sbjct: 266 ARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCAS 325
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G SLI + ++ ++ N L+ MYA C + +F EM E
Sbjct: 326 LGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKE 376
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
ISR + + L++ H + +L L S + +I ++ P S + S+F V
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPAS---SLSVFRRVS 66
Query: 62 PP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P ++ +N++IRA++K ++++ + ++ ++ + PD T+P V+KA +G
Sbjct: 67 PAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V+ I ++G SD Y+GN L+ MY+ + A+ +FDEMP
Sbjct: 127 LVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMP 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +FN++ ++N++I Y ++ +E++KLF M+ + D++TY ++ S +
Sbjct: 361 ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTR 420
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +HS K G++ D + N L+ MYA C E+ + +F+ M
Sbjct: 421 LADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSM 469
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP L ++N+LI Y+ E+++++ E+ + + PD+ T V+
Sbjct: 157 LSRARQVFDE-MPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLP 215
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A L++ G +H K G++S + N LL MY A+ +FDEM
Sbjct: 216 AFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEM 268
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 53 TRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ V+ YNT+I Y K ES+K+F E L +PD LT V+ A
Sbjct: 261 ARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGH 319
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +++ + + G + + N L+ +YA C ++ A+ +F+ M
Sbjct: 320 LRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSM 368
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 37/172 (21%)
Query: 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNN-----VMPPLFAYNTLIRAYAKTSC 79
+ ++ DH TY++ + T L L F + L +N + L N LI YAK
Sbjct: 400 MIMEEQADHITYLMLISLSTRLA-DLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGE 458
Query: 80 SIESIKLFDEM--------------------LKTGLR-----------PDNLTYPFVVKA 108
+S+K+F+ M TGL+ PD T+ +
Sbjct: 459 VGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPM 518
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G +H + + G S+ IGN L+ MY+ C ++ + +F+ M
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERM 570
>gi|255539473|ref|XP_002510801.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549916|gb|EEF51403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 450
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 17/163 (10%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-----MPPLFAYN 68
T H Q+ A + SL HN I S+F+ S S+ ++ +F+ + + + +N
Sbjct: 17 TFQHLKQIHAFIIAASLTHNIQIFSKFLRRSTEFGSMDYSHLIFSQMGHDYFITEIMLWN 76
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
+IR YA +I +FDE+ + GL+P N TYP+V+ + + + G VH I K
Sbjct: 77 IMIRGYAFNGPFERAISMFDEIPQRGLKPHNYTYPYVLNSCCEMGIYEKGKRVHCQIIKS 136
Query: 129 GLHSDKYIGNTLLRMY-----------AACKEIDFAKALFDEM 160
G S+ +G++L MY A E+ A+ +FD M
Sbjct: 137 GFESNFAVGHSLFNMYIKMPAFTDTVFADNYEMIDARKIFDNM 179
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPL-FA 66
L+Q K H Q+ A +++ L ++ + + I L S + + LF + P F
Sbjct: 33 LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IRA S +++ L+ M+ G+ D T+PFV+KA L I +G VH +
Sbjct: 93 WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G D ++ N L+ Y C FA +F++M
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I A+ S+E+++ F + K GL P ++P +K+ + G H
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 1168
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
F G +D ++ + L+ MY+ C ++ A+ALFDE+P
Sbjct: 1169 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP 1204
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N++I YA++ S E++++F M++ G+R + +T V+ A + G +H
Sbjct: 1319 SWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQ 1378
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+ L + +G +++ MY C ++ AK FD M E
Sbjct: 1379 VIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKE 1416
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + + ++ +I Y + E+++LF M + P+ T ++KA
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++ +G +H K + Y+G L+ MY+ C I A +F+ MP
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPR 320
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK--------TGLRPDNL 100
L R+LF+ + + + ++ ++I Y + + ++ LF + L+ + D++
Sbjct: 1193 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+ A + G+ VH + K G +GNTL+ YA C + +K +FD M
Sbjct: 1253 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 1312
Query: 161 PE 162
E
Sbjct: 1313 EE 1314
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IR YA E I++FDEM + GL+P N TYP+V+ + + G G VH I
Sbjct: 22 WNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCEIV 81
Query: 127 KVGLHSDKYIGNTLLRMY------------AACKEIDFAKALFDEM 160
K G S + N+L MY + CK +D+A+ +FD+M
Sbjct: 82 KSGFESSYAVANSLFNMYLKMPASFDVGLASNCK-LDYARKIFDDM 126
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L RS F MP + ++N++I +YAK +ES+ LF +M G+ PD T+ V+
Sbjct: 209 LETARSFFET-MPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLS 267
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
A + G +H L + S+ +G L MYA C ++D A A+F
Sbjct: 268 ACSNLGDLEFGKYIHYLSGDLS-QSEVMVGTALTEMYAQCGDVDKAFAVF 316
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+F +N +I+A A S E+IK+F M KTGL+P++ T+
Sbjct: 324 VFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTF 362
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-------LHFTRSLFNNVM 61
L+Q ++ H QL A L ++ + + + +S L R +F+ V
Sbjct: 9 LLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVP 68
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P FAYN+LIRAY+ + C E++ L ++L+ G+ P+ T PFV+KA + +
Sbjct: 69 DPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALA 128
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H + K+G ++GN LL A+ + ++ LF EM
Sbjct: 129 THGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEM 168
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL +R LF + P + ++NT+I A+ + E+ LF EM + G+ D T+ ++
Sbjct: 157 SLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLL 216
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + VG VH + G D +GN L+ MY C ++ A FD MP
Sbjct: 217 LVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMP 271
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I Y + E++ L++ M GL PD +T V+ Q + G +H
Sbjct: 306 IISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHC 365
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I + N+L+ MYA C ++D + +LF EMP
Sbjct: 366 YIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMP 403
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVK 107
+H R LF+ + YN +I+ Y E++K+F EML + PDN TYPFV+K
Sbjct: 71 VHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIK 130
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + LL+ G +H L S ++ N+LL MY C E++ A+ +FD M E
Sbjct: 131 ACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKE 185
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NT+I Y K + ++ +F++M+ +G+ D + V+ A + VG VH
Sbjct: 188 VVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHG 247
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ + L K + N L+ MYA C +D A+ +FD M E
Sbjct: 248 LVEEKVL-GKKIVSNALVDMYAKCGSMDEARLVFDNMVE 285
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 24 ALFLKTSLDHNTYIISRFI-----LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTS 78
A +KTS N Y++++FI L +++ F + P +F YN LI+ + S
Sbjct: 801 AAMIKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQK---PNVFVYNALIKGFVTCS 857
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
I S++ + ML+ + P + TY +V+AS G G S+ + I+K G I
Sbjct: 858 HPIRSLEFYVRMLRDSVSPSSYTYSSLVQAS--AFASGFGESLQAHIWKFGFGFHVQIQT 915
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
TL+ Y+A I A+ +FDEMPE
Sbjct: 916 TLIGFYSASGRIREARKVFDEMPE 939
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L SLFN MP + ++ T+I Y++ E+I +F +M++ G+ PD +T V+
Sbjct: 988 NLELAESLFNQ-MPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVI 1046
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A ++ +G VH + G D YIG+ L+ MY+ C ++ A +F +P+
Sbjct: 1047 SACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK 1102
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT- 93
T II+ + + P F + LF +N +I +Y++ E ++ F EM+ T
Sbjct: 479 TRIITMYAMCGSPDDSRFVFDALRS--KNLFQWNAVISSYSRNELYDEVLETFIEMISTT 536
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
L PD+ TYP V+KA +G+G +VH L+ K GL D ++GN L+ Y + A
Sbjct: 537 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 596
Query: 154 KALFDEMPE 162
LFD MPE
Sbjct: 597 LQLFDIMPE 605
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 8 TLIQLSKTAHHHHQLPAL------FLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV 60
T++ H LP+L LK +N + + F+ + SL + + +F+ +
Sbjct: 752 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 811
Query: 61 MPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
+ ++N LI +A+++ S+ +M +GL PD+ T ++ A + + +G
Sbjct: 812 RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 871
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH I + L D ++ ++L +Y C E+ +ALFD M +
Sbjct: 872 EVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 914
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT----GLRPDNLTYPFVVKASDQC 112
++MP L ++N++IR ++ S ES L EM++ PD T V+ +
Sbjct: 601 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 660
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
IG+G VH K+ L + + N L+ MY+ C I A+ +F
Sbjct: 661 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 705
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA-Y 67
++L + AH A LK L+ + +I I + + S+ + +FN + A +
Sbjct: 968 LRLGREAH------AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 1021
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
N +I Y + E+IKLF+EM +TG PD+LT+ V+ A + LI G
Sbjct: 1022 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEG 1072
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 7/149 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
++ A +K SL +++++++ + + + + LF V P F YN +IRAY
Sbjct: 6 KIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHNK 65
Query: 79 CSIESIKLFDEML-----KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
I +I + +ML + PD T+PFVVK + +G VH FK G S+
Sbjct: 66 VYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSN 125
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I N+L+ MY C +D A +F+EM E
Sbjct: 126 TVIENSLVEMYVKCDSLDDAHRVFEEMTE 154
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 5/158 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-L 64
+E ++ H + + ++ NT I L + R++F + +
Sbjct: 133 VEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQM----RRARAIFEELQDKTI 188
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F++ ++ YA+ C +++ F M + D ++ V+ A Q + +G +H
Sbjct: 189 FSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIY 248
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G D + N L+ +YA +D + LF +M E
Sbjct: 249 ADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNE 286
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK------TGLRPDNLTYPFVV 106
R +F+ + P F YNTLIR A + +++ ++ M + G+RPD T+PFV+
Sbjct: 62 RLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVL 121
Query: 107 KASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+A C +G G VH+ + K G SD ++ N L+ M+A C ++ A ALFD
Sbjct: 122 RA---CAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFD 173
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + ++++LF++M G +PD +T ++ A + G +H +
Sbjct: 244 SWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFL 303
Query: 126 ----FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
++G +GN L+ MYA C + A +F
Sbjct: 304 SGRFSRIG--PSTVLGNALIDMYAKCGSMTSALEVF 337
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS----LHFTRSLFNNV-MPPLFAYNTLIRAYA 75
Q+ A L+T+ H+ Y S + T+ S L + R +F+ + P L+++N LIRA A
Sbjct: 157 QIHAQMLRTNKLHDPYAASE-LFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALA 215
Query: 76 KTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKA--SDQCLLIGVGGSVHSLIFKVGLHS 132
+S I+S+ +F ML + P+ T+P ++KA +C L VG +VH + K
Sbjct: 216 TSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFL--VGKAVHGMAIKTSFGD 273
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFD 158
D ++ N+L+ YA+C +D A +F+
Sbjct: 274 DVFVLNSLIHFYASCGHLDLAYLVFE 299
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEM--LKTGLRPDNLTYPFVVKA 108
R +F++ MP + A+N LI Y ++ E++ +F E+ K+G RPD +T + A
Sbjct: 428 ARDIFDS-MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSA 486
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
Q + +G +H I K + ++ + +L+ MY+ +++ A +F
Sbjct: 487 CAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVF 535
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N+++ + + +++ LF+ M G+ P+ +T V+ A + + + +G V
Sbjct: 308 IVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCD 367
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + + + + N + M+ C E++ A+ LFD M +
Sbjct: 368 YIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEK 406
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 37/176 (21%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS-----LHFTRSLFNNVMPP-LFAYNTLIRAYAKT 77
A ++T + + + SR I + S + + +F+ + P LF +N +IR ++ +
Sbjct: 38 AYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGS 97
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
++ + + + GL PDNLT+PF+VK+ + I +G H I K G D Y+
Sbjct: 98 KNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQ 157
Query: 138 NTLLRMYAA-------------------------------CKEIDFAKALFDEMPE 162
N+L+ MYA C +++ A+ LFD+MPE
Sbjct: 158 NSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPE 213
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP L ++T+I YA+ + ++++LF + G+R + V+ +
Sbjct: 204 ARKLFDQ-MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCA 262
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G H + K G+ + +G L+ MYA C ID A +F+++PE
Sbjct: 263 HLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPE 314
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + + +F+ + P F YN+LIR Y+ + I+++ LF M+ +GL P+ T PFV+K
Sbjct: 37 DLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLK 96
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A VH L K+G+ S ++ N L+ +Y C I A+ LFD++ +
Sbjct: 97 ACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITD 151
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 3/156 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LF 65
L+ + + H A+F +T + S + S+ R +F+ MP +
Sbjct: 162 ALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ-MPGKNVV 220
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + E++ LF++M + + PD T ++ A Q + +G +H+ I
Sbjct: 221 SWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYI 280
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ N+L+ MYA C + A +F EMP
Sbjct: 281 LSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP 316
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L ++N +I A A C +E+IKLF+EM G PD +T ++ A L+ +G
Sbjct: 320 LVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 374
>gi|255570994|ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534228|gb|EEF35943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N LIRAYA E+I L+ +ML+ G++P TYPFV+KA I G +H
Sbjct: 86 WNMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEIHIHAK 145
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
++ L SD Y+ ++ MYA C +D A+ +F MP
Sbjct: 146 RLDLDSDVYVSTAVVDMYAKCGCLDDAEMVFSGMP 180
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 61 MP--PLFAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
MP + A+N++I ++ C E+I+L +M K +RP++ T V+ A Q +
Sbjct: 179 MPYRDVVAWNSMIAGFSLHRVCYNETIQLLAQMQKDLVRPNSSTIVAVLPAVAQANALSH 238
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G ++H + G D + LL MY C+ I +A+ FD M
Sbjct: 239 GKALHGFCVRRGYIDDVVVATGLLDMYGKCQCIIYARNFFDMM 281
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+Y+ +I + + E++ +F M +G+ P+ T ++ A + G HS
Sbjct: 394 SYSAIISGCMQNGNAKEALSMFHRMRLSGMDPELATMVGILPACAHLAALQHGSCCHSYA 453
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S+ I N L+ MYA C ID A+ +FD M
Sbjct: 454 LIKGFTSEITICNALIDMYAKCGRIDTARNVFDRM 488
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 52 FTRSLFN--NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG----LRPDNLTYPFV 105
+ R+ F+ +++ ++ ++ AY E++ LF M++ P +T V
Sbjct: 273 YARNFFDMMSIVRNEVTWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATV 332
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++A + + G +H K G SD +GNTLL YA C + A F EM
Sbjct: 333 LRACAELTDVSRGRCIHCYTIKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEM 387
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R++F+ + + ++N +I AY +E++ LFD ML GL PD++T+ ++ A
Sbjct: 481 ARNVFDRMHKRDIVSWNAMIIAYGNHGLGMEALLLFDNMLADGLEPDDVTFICLLSACSH 540
Query: 112 CLLI 115
L+
Sbjct: 541 SGLV 544
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + + +F+ + P F YN+LIR Y+ + I+++ LF M+ +GL P+ T PFV+K
Sbjct: 37 DLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLK 96
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A VH L K+G+ S ++ N L+ +Y C I A+ LFD++ +
Sbjct: 97 ACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITD 151
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
+I+ +++ L +H R LF+++ L ++N++I YA E+ LF +M + G+
Sbjct: 129 LIAVYVVCGL---IHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGM 185
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PD T+ ++ Q + +G VH I G+ D + N L+ MYA C + A+A
Sbjct: 186 EPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQA 245
Query: 156 LFDEMPE 162
+FD E
Sbjct: 246 IFDRTQE 252
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 3/156 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LF 65
L+ + + H A+F +T + S + S+ R +F+ MP +
Sbjct: 229 ALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ-MPGKNVV 287
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + E++ LF++M + + PD T ++ A Q + +G +H+ I
Sbjct: 288 SWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYI 347
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ N+L+ MYA C + A +F EMP
Sbjct: 348 LSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP 383
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L ++N +I A A C +E+IKLF+EM G PD +T ++ A L+ +G
Sbjct: 382 MPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 441
>gi|449491452|ref|XP_004158900.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 547
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+T +F ++ +P F N +I+AY+ ++ +E++ ++ E L GLRPD+ T+ + A
Sbjct: 100 YTVLIFRHIKVPNTFCVNRVIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSA-- 157
Query: 111 QCLLIGVGGS---VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
C G G S H FK G+ S +GN+L+ MY CK I+ + +FDEM
Sbjct: 158 -CASFGCGASGRKCHGQAFKNGVDSVMVLGNSLIHMYGCCKHIELGRKVFDEM 209
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+VMP + ++N +I Y + ++KLF M+ G+R +N T V+ A + +
Sbjct: 238 DVMPERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLN 297
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G SVH +++ + +I L+ MY+ C + A+ +FD +
Sbjct: 298 EGRSVHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRL 341
>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
Length = 1251
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N +R + +ES+ LF EM + G P+N T+PFV KA + IG VH+ +
Sbjct: 615 AWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHL 674
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K SD ++G + M+ C +D+A +F+ MP
Sbjct: 675 IKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMP 710
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--L 64
+TL Q + H H A+ L T D + I+ FI + L ++MP
Sbjct: 866 QTLTQ-GRLIHSH----AIHLGT--DQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTC 918
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++ +I YA+ E++ LF M KTG+ PD +T ++ + + +G +
Sbjct: 919 VSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGR 978
Query: 125 IFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D + N L+ MY+ C ID A+ +FD E
Sbjct: 979 ADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSE 1017
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 45/96 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++ +A+A + ++ + ML+ +PD T+ + + + G +HS
Sbjct: 819 SWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHA 878
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G D NT + MY+ + A+ LFD MP
Sbjct: 879 IHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMP 914
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 5/157 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVMPP 63
+L++ K+ Q+ + + T L + + SR I ++ + T LFN P
Sbjct: 55 SLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPN 114
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
F++N IR + + E++ L+ +L+ G +PDN TYP + KA + LI +G +
Sbjct: 115 TFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEIL 174
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ +G SD ++ N ++ + +C ++D A+ +FD+
Sbjct: 175 GHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDK 211
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I Y + E++ LF+EM + PD +T + A Q + VG +H I
Sbjct: 280 WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIE 339
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K L + +G L+ MYA C +I A +F E+P
Sbjct: 340 KHELSLNVALGTALIDMYAKCGKITKAIQVFQELP 374
>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 1 MISRQIETLIQLSKTAHH---HHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLF 57
+ S +ET QL H H +P L+ S+ ++ ++ + H
Sbjct: 81 IFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRIEEAHRLFDQM 140
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ FA+N+LI YA+ +++ L+ +M + G+ PD T+P V+KA I V
Sbjct: 141 SRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISV 200
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G VH + + G D ++ N L+ MYA C +I A+ +FD++
Sbjct: 201 GEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKI 243
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ ++ ++N+++ Y + ++++ +F ML+ G PD + VV
Sbjct: 236 ARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPS 295
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G +H + + G+ + I N+L+ +Y+ ++D A LFD MPE
Sbjct: 296 ---LKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPE 343
>gi|302792220|ref|XP_002977876.1| hypothetical protein SELMODRAFT_107453 [Selaginella moellendorffii]
gi|300154579|gb|EFJ21214.1| hypothetical protein SELMODRAFT_107453 [Selaginella moellendorffii]
Length = 485
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + A+N++I A+ + SI +++ F M+ G+RP+ ++ V A D C + G +
Sbjct: 24 PGVPAWNSMIAAHFHSGDSIAALRFFQRMMAEGIRPNPRSF---VAALDACSRLEEGDFI 80
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H L VGL SD +G +L+ Y C +D A+ LFDEMP
Sbjct: 81 HELAIAVGLASDAIVGFSLVGFYRRCHRLDLARKLFDEMP 120
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF+ MP + A+N +I A A++ S ++++L M G+ P+++T+ ++
Sbjct: 109 LDLARKLFDE-MPGRDVIAWNAMISANAQSGRSDQALELLLLMDLDGVHPNSVTFLSALE 167
Query: 108 ASDQCLLIGVGGSVHSL-IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A G +H+ + G+ + + + N L+ MY C+E+ AKA+FD M +
Sbjct: 168 ACTNLSDASRGSKLHTEGMLGSGIENSRKVSNALINMYGKCRELGRAKAVFDGMSD 223
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVH 122
++ T++ ++A+ ++ + FD + + N V D C G G S+H
Sbjct: 228 SWTTMLASFAENGDLEQASRAFDRIPERQCVAFNSMLAAFVGILDACACCGALTEGRSIH 287
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G D IG+ L+ MY C ++ + +FD MP
Sbjct: 288 QEAVLRGFQDDVTIGSALVNMYGKCGQVGPGREVFDGMP 326
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLFNNVMPP-LFAYN 68
KT QL A+F+KT + + I +S I + R++F + P F +N
Sbjct: 30 KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDID--YARAVFRQMPEPNCFCWN 87
Query: 69 TLIRAYAKTS---CSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
T++R A+T+ E++ LF ML G ++P+ T+P V+KA + + G +H L
Sbjct: 88 TILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I K G H D+++ + L+RMY C ++ A +LF
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
++LF+ MPP + ++N +I YA+ IE+I LF EM + + P+ +T V+ A
Sbjct: 223 AKNLFDE-MPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIA 281
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + +G +H K + D +G+ L+ MY+ C ID A +F+ +P+
Sbjct: 282 RIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPK 333
>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
Length = 622
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 15/158 (9%)
Query: 14 KTAHHHHQLPALFLKTSLD----HNTYIISRFILTSLPISLHFTRSLFNN-VMPPLFAYN 68
+ AH H +K +D H +++ L+ P + S+F + V P F YN
Sbjct: 59 RKAHARH------IKLGVDRCPRHARPLLAACALSGWPGGMELAASIFESLVEPEAFDYN 112
Query: 69 TLIRAYAKTSCS----IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
TL+R + +++L+ +ML+ G+ PD+ T+PFV+KA Q + G + +
Sbjct: 113 TLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDSYTFPFVLKACAQLASLQQGRQLQAH 172
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K+GL D+++ N+L+ Y C E A+ FD + +
Sbjct: 173 IEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVED 210
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
+++ L+ AY K E ++ F M+ G RPD + +V A C +G VG S+H
Sbjct: 217 SWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESS---MVSAISACAHLGAFDVGRSIH 273
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + + +L+ MYA C I+ A A+FD M +
Sbjct: 274 CALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDD 313
>gi|357511223|ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500915|gb|AES82118.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 467
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNN 59
+ R ++ L +T H Q+ A + +L +T I I S +L ++ LF +
Sbjct: 8 LAERVVKLLKSFCRTQIHVKQIQAQIIIHNLQSHTTIAEHLITASQSHNLLNYVSPLFTH 67
Query: 60 VMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
++P +F +N+LIRA++ + + L+ M K + P+N T+PF+ K+
Sbjct: 68 LIPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILPNNFTFPFLFKSLSDSHDFVQ 127
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
V++ + K+G +D Y+ N+LL +YA+ ++ + LFDEMP+
Sbjct: 128 SQCVYTHVIKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQ 172
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N +I YA+T E+++LF +M+KT +RPD T VV A Q
Sbjct: 176 AQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 235
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I +G VHS I G S+ I N L+ +Y+ C E++ A LF+ +P
Sbjct: 236 SGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP 285
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMPP-LFAYNTLIRAYAKT 77
A +KT L + Y +S+ I + +S HF S+F + P L +NT+ R +A +
Sbjct: 11 AQMIKTGLHNTNYALSKLIEFCI-LSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALS 69
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S + ++KL+ M+ GL P++ T+PF++K+ + G +H + K+G D Y+
Sbjct: 70 SDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVH 129
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
+L+ MY ++ A +FDE P
Sbjct: 130 TSLISMYVQNGRLEDAHKVFDESP 153
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 289 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 348
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ A +F+ +
Sbjct: 349 YIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI 387
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNN 59
++ + TL++ K HQ+ A + L+HN ++ FI T S +H R LF+
Sbjct: 10 IVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDK 69
Query: 60 VMPPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P A +N + R Y + +++ LF E+ + P+ T+P ++K+ + + G
Sbjct: 70 IPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREG 129
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH K G S+ ++ +L+ MY+ ++ A +F EM E
Sbjct: 130 EEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHE 173
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++N LI Y K E+++ F ML G + P++ T V+ A + + +G VH
Sbjct: 269 VFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVH 328
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+G + ++GN L+ MYA C I+ A +F+
Sbjct: 329 VYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFN 364
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT----SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAK 76
Q+ L+ LD + YI+++ I T +P+ + R + F + +IR YA
Sbjct: 67 QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAI 126
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
E+I ++ M K + P + T+ ++KA + +G H+ F++ Y+
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYV 186
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GNT++ MY C+ ID A+ +FDEMPE
Sbjct: 187 GNTMIDMYVKCESIDCARKVFDEMPE 212
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+ ++ +A+ + E+++ FD M K+G+R D +T + A Q
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 305
Query: 124 LIFKVGLHSDKY--IGNTLLRMYAACKEIDFAKALFDEM 160
+ K G + IG+ L+ MY+ C ++ A +F M
Sbjct: 306 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRA--YAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVK 107
+ R +F+ + P +FAYN++IR Y K S E I LF +M+ G P+ T FV+K
Sbjct: 42 YARKIFSQIPNPGIFAYNSVIRGCLYTKIP-SKEPIHLFKDMVGKGYPNPNTFTMAFVLK 100
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + + G +H+ I + G S Y+ ++L+ Y+ C+EI A+ +FDE+ E
Sbjct: 101 ACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITE 155
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ A L++ + Y+ S + S + R +F+ + L ++ ++ YA+
Sbjct: 113 QIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLG 172
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGLHSDKY 135
E++ +F EM G+ PD ++ V+ A C ++G +G VH+ I K +H D
Sbjct: 173 MINEALIMFREMQVVGIEPDEVSLVGVLSA---CAMVGALDIGKWVHAYIKKRMIHVDLE 229
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ L+ MYA C I+ A+ +FDEM
Sbjct: 230 LNTALINMYAKCGCIEKAREIFDEM 254
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPA-LFLKTSLD----HNTYIISR--FILTSLPIS----- 49
+S I TLI+ KT + +Q+ A F K L + I+++ + LT++P
Sbjct: 26 LSHSIYTLIRQCKTINQLYQVHAQAFTKGLLSLTACSSPQILTKILYALTTIPTPKSSFS 85
Query: 50 -LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
LH+ S F+N+ P F YN +IR + S ++ ++ F +M + + PD +YPF +K
Sbjct: 86 LLHYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALK 145
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
A ++ + +HS +FK G SD Y+ N+L+ +Y+ +++A +FDE
Sbjct: 146 ACAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDE 197
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ +MP ++ +LI YA+ S E+I LFD M+ L PDN+ + A
Sbjct: 222 AREIFD-LMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLEPDNIALVSALSACA 280
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + G +H I K + +D ++ L+ YA ID A +F+ P+
Sbjct: 281 QLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTAIKVFELSPD 332
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYA 75
H HQ+ A + +L NT I FI SL + ++ P +F N+LIRA++
Sbjct: 26 HIHQIQAQLIVQNLHSNTTIAHHFITACQSLGLLDSALLLFTHHSKPHVFICNSLIRAFS 85
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
++ M + P+N T+PF++K+ + G +H+ + K+G D Y
Sbjct: 86 HNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGLSEGQCIHTHVVKLGQFDDIY 145
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+ N+LL +YA+C ++ +FDEMP
Sbjct: 146 VQNSLLNVYASCGDMGLCMRVFDEMP 171
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGS 120
+ ++ LI Y +++ F++M G+ P+++T +V A C G +G
Sbjct: 175 VVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVT---MVNALSACADFGALEMGVW 231
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H I + G D +G +L+ MY C I+ +F M E
Sbjct: 232 IHEFIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKE 273
>gi|224148148|ref|XP_002336601.1| predicted protein [Populus trichocarpa]
gi|222836288|gb|EEE74709.1| predicted protein [Populus trichocarpa]
Length = 223
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P LF YN+ IR ++ + +S + + + GL PDNLTYPF+VKA Q + +G
Sbjct: 76 PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H I + G SD Y+ N+L+ MY+ +I A +F +
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRI 174
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
ISR + + L++ H + +L L +S + +I ++ P S + S+F V
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPAS---SLSVFRRVS 66
Query: 62 PP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P ++ +N++IRA++K E+++ + ++ ++ + PD T+P V+KA +G
Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V+ I +G SD ++GN L+ MY+ + A+ +FDEMP
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMP 168
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +FN++ ++N++I Y ++ +E++KLF M+ + D++TY ++ S +
Sbjct: 361 ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR 420
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +HS K G+ D + N L+ MYA C E+ + +F M
Sbjct: 421 LADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM 469
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNT+I Y K ES+++F E L +PD LT V++A + + +++ +
Sbjct: 275 SYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYM 333
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + + N L+ +YA C ++ A+ +F+ M
Sbjct: 334 LKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP L ++N+LI Y+ E+++++ E+ + + PD+ T V+ A
Sbjct: 160 ARQVFDE-MPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFG 218
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L++ G +H K G++S + N L+ MY + A+ +FDEM
Sbjct: 219 NLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEM 268
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 37/172 (21%)
Query: 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNN-----VMPPLFAYNTLIRAYAKTSC 79
+ ++ DH TY++ + T L L F + L +N + L N LI YAK
Sbjct: 400 MIMEEQADHITYLMLISVSTRLA-DLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGE 458
Query: 80 SIESIKLFDEM--------------------LKTGLR-----------PDNLTYPFVVKA 108
+S+K+F M TGL+ PD T+ +
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G +H + + G S+ IGN L+ MY+ C ++ + +F+ M
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERM 570
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP----LFAYNTLIRAY 74
HQ F +L+ +++IS +I L L ++ R PP ++ +N+LIR+Y
Sbjct: 48 HQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRF-----PPSDAGVYHWNSLIRSY 102
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + + F M PDN T+PFV KA + + G S H+L G S+
Sbjct: 103 GNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNV 162
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161
++GN L+ MY+ C + A+ +FDEMP
Sbjct: 163 FVGNALVAMYSRCGSLSDARKVFDEMP 189
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHS 123
++ I YA+ E++ + +ML +G++P+ +T V+ C +G G +H
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG---CASVGALMHGKEIHC 389
Query: 124 LIFKVGL------HSDK-YIGNTLLRMYAACKEIDFAKALFDEM 160
K + H D+ + N L+ MYA CK++D A+A+FD +
Sbjct: 390 YAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSL 433
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFV 105
SL R +F+ MP + ++N++I +YAK ++++F +M G RPD++T +
Sbjct: 177 SLSDARKVFDE-MPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDIT---L 232
Query: 106 VKASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V C +G +G H + + ++GN L+ MYA +D A +F MP
Sbjct: 233 VNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMP 291
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 53 TRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL--RPDNLTYPFVVK 107
R++F+++ P + + +I Y++ + ++++L EM + RP+ T +
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + +G +H+ + ++ ++ N L+ MYA C +I A+ +FD M E
Sbjct: 486 ACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMME 541
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 43 LTSLPISLHFTRSLFNNVMPPLFA--------------YNTLIRAYAKTSCSIESIKLFD 88
L +P+ H+ + ++ PL + ++++I ++A+ + +I+ F
Sbjct: 85 LQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFC 144
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
M+ L PD+ +P KA C ++G VG SVH L+ K G D ++G++L+ MYA
Sbjct: 145 RMIGENLCPDDHIFPSATKA---CAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYA 201
Query: 146 ACKEIDFAKALFDEMP 161
C +I A+ +FDEMP
Sbjct: 202 KCGDIKEARNVFDEMP 217
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSI 81
L +KT D + ++ S + + + + R++F+ MP + +++ +I Y +
Sbjct: 180 LVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDE-MPHRNVVSWSGMIYGYTQLGEHE 238
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+++LF E L GL ++ T V++ L+ +G +H L FK ++G++L+
Sbjct: 239 EAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLI 298
Query: 142 RMYAACKEIDFAKALFDEMP 161
+Y+ C I+ A +FDE+P
Sbjct: 299 SLYSKCGLIEGAYRVFDEVP 318
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
F R +F+ + L ++N++I YAK C+ E++++F EM + G PD ++ V+ A
Sbjct: 169 FARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGAC 228
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +G V + + G+ + YIG+ L+ MYA C ++ A+ +FD M
Sbjct: 229 GELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGM 279
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 34 NTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEML 91
N+YI S I + + L R +F+ + + +N +I YA+ + E+I LF M
Sbjct: 252 NSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMK 311
Query: 92 KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
+ + + +T V+ A + +G + + G D ++ L+ MYA C +
Sbjct: 312 EDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLA 371
Query: 152 FAKALFDEMPE 162
A+ +F EMP+
Sbjct: 372 SAQRVFKEMPQ 382
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +A+N +IRA T ++ LF M+ L P+N T+PF + ++ +
Sbjct: 78 PNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARA 137
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
HSL+FK+ LHSD + ++L+ MY+ C + FA+ +FDE+P
Sbjct: 138 AHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIP 178
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAY 74
H+ Q+ A +K LD N ++ + I + + + L FN + + LF + +I Y
Sbjct: 533 HYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNY 592
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
A+T+ +++ F +M + G++P+ T + + G +HS++FK G SD
Sbjct: 593 AQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDM 652
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
++G+ L+ MYA C ++ A+ALF+ +
Sbjct: 653 FVGSALVDMYAKCGCMEEAEALFEAL 678
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++ LI+ + +SI LF EM G+ P+ T +KA C+ + +G
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ FK+GL D ++G+ L+ +YA C EI+ A +F MPE
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPE 276
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ YA+ +KLF M++ ++ + T V+K + G +HSLI
Sbjct: 282 WNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLII 341
Query: 127 KVGLHSDKYIGNTLLRMYAAC 147
K G +++IG L+ MY+ C
Sbjct: 342 KCGYEGNEFIGCGLVDMYSKC 362
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++ LI + S ESIKLF M P+ T ++ A+ + G S+
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ ++K G +D + N L+ MY + L++ M +
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVD 478
>gi|224135053|ref|XP_002327555.1| predicted protein [Populus trichocarpa]
gi|222836109|gb|EEE74530.1| predicted protein [Populus trichocarpa]
Length = 417
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIE 82
L K L+ + Y+ I + + F R +F+ + L ++N++I Y+KTS + +
Sbjct: 72 LVFKAGLEGDEYVNRSLITMYKRCGEMGFARMVFDEMGERELASWNSMISGYSKTSFAKK 131
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+ LF EM + G PD +T V+ A C +G+G V + + + + Y+G+ L+
Sbjct: 132 AFGLFMEMREKGFEPDEMTLVSVLGA---CGDLGLGRWVEGFVLEKKVEVNSYVGSALID 188
Query: 143 MYAACKEIDFAKALFDEMP 161
MY C+++ A+ +FD MP
Sbjct: 189 MYGKCRDLISARRVFDSMP 207
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P A+N ++R A T + +L+ ++ GL+ +N TYPF+ A G
Sbjct: 7 IKSPNHAFNVMLRGLATTRKKYDFCAELYYKLKSLGLKANNFTYPFLFIACGNVWGFLHG 66
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H L+FK GL D+Y+ +L+ MY C E+ FA+ +FDEM E
Sbjct: 67 KIDHRLVFKAGLEGDEYVNRSLITMYKRCGEMGFARMVFDEMGE 110
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ LF+ + + + ++N +I YA+T E+++LF EM+KT +RPD T VV A Q
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQ 278
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I +G VHS I G S+ I N+L+ +Y+ C E++ A LF+
Sbjct: 279 SGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFE 325
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMP 62
+L+ KT + A +KT L + Y +S+ +L IS HF S+F +
Sbjct: 38 SLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSK-LLELCVISPHFDGLPYAISVFETIQE 96
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L +NT+ R +A +S + ++KL+ M+ GL P++ T+PF++K+ + G +
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQI 156
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H + K+G D ++ +L+ +Y ++ A+ +FD P
Sbjct: 157 HGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSP 196
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G RP+++T ++ A I +G +H
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHV 391
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K + + +L+ MYA C +I+ A +F+ +
Sbjct: 392 YIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 47 PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCS-----IESIKLFDEMLKTGLRPDNL 100
P S+ + S+F + P F YNTL+R Y +++LF +M+ G+ PD+
Sbjct: 80 PGSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSY 139
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
T+PFV KA Q + G + + K+G D++ N+L+ Y C E D A+ F++M
Sbjct: 140 TFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQM 199
Query: 161 PE 162
+
Sbjct: 200 ED 201
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
+++ L+ AY + E ++ F M++ G RPD + +V A C +G VG S+H
Sbjct: 208 SWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESS---MVSALSACAHLGAHDVGRSIH 264
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + ++ +L+ MYA C I+ A A+FD M +
Sbjct: 265 CALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDD 304
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAY 74
H+ Q+ A +K LD N ++ + I + + + L FN + + LF + +I Y
Sbjct: 533 HYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNY 592
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
A+T+ +++ F +M + G++P+ T + + G +HS++FK G SD
Sbjct: 593 AQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDM 652
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
++G+ L+ MYA C ++ A+ALF+ +
Sbjct: 653 FVGSALVDMYAKCGCMEEAEALFEAL 678
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++ LI+ + +SI LF EM G+ P+ T +KA C+ + +G
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ FK+GL D ++G+ L+ +YA C EI+ A +F MPE
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPE 276
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ YA+ +KLF M++ ++ + T V+K + G +HSLI
Sbjct: 282 WNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLII 341
Query: 127 KVGLHSDKYIGNTLLRMYAAC 147
K G +++IG L+ MY+ C
Sbjct: 342 KCGYEGNEFIGCGLVDMYSKC 362
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++ LI + S ESIKLF M P+ T ++ A+ + G S+
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ ++K G +D + N L+ MY + L++ M +
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVD 478
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
++++ A++ + + LF E+ GL PDN T P V+K+ + + G VH K G
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L SD Y+ N+L+ MYAA +++ +FDEMPE
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPE 93
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F RS +V+ + ++ Y + + E+++LF M +RPDN ++ Q
Sbjct: 220 FERSPVKDVV----LWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQ 275
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I + + DK +G L+ MYA C I+ A +F EM E
Sbjct: 276 TGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKE 326
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIES 83
+KT L+ ++Y+ + + + + + T +F+ MP + ++N LI +Y ++
Sbjct: 57 VKTGLESDSYVCNSLMGMYAALGKMEITHKVFDE-MPERDVVSWNGLISSYVGHGRFEDA 115
Query: 84 IKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI---FKVGLHSDKYIGNT 139
I +F M + + L+ D T + A + +G ++ + F++ + + GN
Sbjct: 116 ISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRT----GNA 171
Query: 140 LLRMYAACKEIDFAKALFDEM 160
L+ M+ C +D A+A+FD M
Sbjct: 172 LVDMFCKCGCLDKARAIFDSM 192
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
LH + LFN + PP A+ ++IR Y +S+ F ML +GL PD+ +P V+K+
Sbjct: 56 LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID-------FAKALFDEMP 161
+ + +G S+H I +VGL D Y GN L+ MY+ + ++ A +FDEM
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175
Query: 162 E 162
E
Sbjct: 176 E 176
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 39 SRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR 96
+R + T +S R +F +MP L ++NT+I A+ E++++ EM L+
Sbjct: 178 TRSVRTVSVLSEDSVRKIFE-MMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLK 236
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
PD+ T V+ + + I G +H + GL +D Y+ ++L+ MYA C +
Sbjct: 237 PDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRV 290
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I + E ++ F +ML ++P + ++ ++ A + +G +H I
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G + +I ++L+ MYA C I AK +FD M
Sbjct: 367 TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRF-ILTSLPISLHFTRSLFNNV---MPPLFAYNTLIRAYAK 76
Q+ A +KT+ + ++R ++ + S H+ + +F V P F +N+ ++A A+
Sbjct: 46 QVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAE 105
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
I++I LF + + + PD T V++A L + G +H ++ KVG S+ Y+
Sbjct: 106 GDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYL 165
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N ++ +YA+C E+ A+ LF++MP+
Sbjct: 166 QNMIVHLYASCGEMGEARLLFEKMPQ 191
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I Y + + E+I LF +M + G++ + +T V+ A + +G +H
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + I NTL+ MY C ++ A +F+EM E
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEE 323
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
+Q+ A LK +L + ++ + I SL L ++FN+V P + YN++IRA+A
Sbjct: 38 NQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHN 97
Query: 78 SCSIESIKL--FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
S S S+ F +M K GL PDN TYPF++KA + + +H+ + K+G + D +
Sbjct: 98 S-SHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIF 156
Query: 136 IGNTLLRMYAACKE--IDFAKALFDEMPE 162
+ N+L+ Y+ C +D A +LF M E
Sbjct: 157 VPNSLIDSYSRCGNAGLDGAMSLFLAMEE 185
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F R NV+ + T+I YA+ + E+ +L+ +M + G+RPD+ ++ A +
Sbjct: 273 FDRCPVKNVV----LWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAE 328
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G+G +H+ + + + N + MYA C +D A +F M
Sbjct: 329 SGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGM 377
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS----LHFTRSL--FNNVMPP- 63
Q + + HH Q AL L+T ++YI + + +S L F SL F+ V P
Sbjct: 42 QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 101
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +I+ + + ++I L+ EM+ RP+ TYP V+KA ++ G VH+
Sbjct: 102 VFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHA 161
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ K GL D +I ++ +RMYA+ + A+ + D+
Sbjct: 162 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 197
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ +I Y + C +E++++F +M K +RP P V+ A + G +H+
Sbjct: 269 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 328
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + D +G +L+ MYA C ID A +F++M
Sbjct: 329 KRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKM 363
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N +I YA+T + E+++LF EM+KT +RPD T VV A Q
Sbjct: 173 AQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ 232
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I +G VHS I G S+ I N L+ +Y C E++ A LF+
Sbjct: 233 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFE 279
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMPP-LFAYNTLIRAYAKT 77
A +KT L + Y +S+ I + +S HF S+F + P L +NT+ R +A +
Sbjct: 8 AQMIKTGLHNTNYALSKLIEFCV-LSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALS 66
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S + ++ L+ M+ GL P+ T+PF++K+ + G +H + K+G D Y+
Sbjct: 67 SDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVH 126
Query: 138 NTLLRMYAACKEIDFAKALFDE 159
+L+ MY ++ A+ +FD+
Sbjct: 127 TSLISMYVQNGRLEDARKVFDQ 148
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 286 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 345
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + +L+ MYA C +I+ A+ +FD +
Sbjct: 346 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI 384
>gi|383167277|gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167278|gb|AFG66681.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167279|gb|AFG66682.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167280|gb|AFG66683.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
Length = 150
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I AYAK E++KLF EM +G+R D+ T+ V+ + G +H I
Sbjct: 5 WNAMITAYAKNEPVEEALKLFHEMKLSGIRADHFTFASVLPVCGNLGNLEQGKEIHHEIN 64
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G SD Y+G+ L+ MY C ++ A+ +FD+MP
Sbjct: 65 RSGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMP 99
>gi|255585042|ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526949|gb|EEF29150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 575
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P LF +N LI+ ++ + + +I LF + K T L PDN TY FVV A+ +G S
Sbjct: 77 PDLFLFNVLIKGFSNNNSPLSAISLFTHLRKSTDLYPDNFTYAFVVSAARNFGDAKIGFS 136
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + GL SD ++G+ L+ MY D A +FD++PE
Sbjct: 137 LHGRVIVDGLSSDLFVGSALVDMYFKLSREDIALKVFDKLPE 178
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 54 RSLFNNVMPPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ A +N +I Y + + ++I LF EM + P+ +T ++ A Q
Sbjct: 373 RQLFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQMYNISPNPVTVTSILSACAQL 432
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H L+ + Y+ L+ MYA C I A+ LFD MPE
Sbjct: 433 GALTLGKWIHGLVKFKSFEYNVYVSTALIDMYAKCGSILEARRLFDSMPE 482
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
YNT+I + C +SI+LF M+ G + D+ T V+ A + + +G + L
Sbjct: 184 YNTMISGLVRVCCYEDSIRLFKYMISGNGPQFDSTTVLAVLPALAELQELRLGTEIQCLA 243
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G S + L+ +Y+ C ++D A LF ++
Sbjct: 244 IKLGFLSHISVVTGLISLYSKCGDVDTASILFTDI 278
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 30 SLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKL 86
S ++N Y+ + I + + S+ R LF++ MP +N +I Y E++KL
Sbjct: 449 SFEYNVYVSTALIDMYAKCGSILEARRLFDS-MPEKNEVTWNAIISGYGLHGLGQEALKL 507
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV-HSLI 125
F EML G++P +T+ V+ A L+ G + HS+I
Sbjct: 508 FYEMLNCGIQPTRVTFLSVLYACSHAGLVREGDEIFHSMI 547
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YN +I + S++LF+E L +G + ++ + ++ + + +H
Sbjct: 283 LISYNAMISGLTFNGETESSVRLFEEWLDSGEKVNSSSIVGLIPVYCPFGYLPLTNCIHG 342
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G+ S + L +Y+ E++ A+ LFDE E
Sbjct: 343 FGVKSGIVSHSSVATALTTVYSRLNEMEAARQLFDESSE 381
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIIS---RFILTSLPISLH-FTRSLFNNVMPP-LFAYNT 69
T +H QL A + +L ++Y+I+ RFI T I +H + LF+ V P F Y+
Sbjct: 23 TLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSA 82
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
LIRAYA+ SI+L+ ML + P + T+ + L G +H F G
Sbjct: 83 LIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL---GSQLHLHAFLFG 139
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+D Y+GNT++ MY +D A+ +FDEMP
Sbjct: 140 FVNDLYVGNTIIHMYVKFGVLDCARKVFDEMP 171
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+ +++ Y++ + ++++ F +M + G+ D +T +V A C +GV G
Sbjct: 206 MVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEIT---LVGAISACAQLGVSGYADW 262
Query: 124 L-----IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G S+ ++G+ L+ MY+ C ++ A +F M E
Sbjct: 263 IREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKE 306
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
+L A +K S++ N I S + + + MP ++ LI Y
Sbjct: 672 ELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLG 731
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++E++K D+ML G++P+ TY +KA + + G +H + K S+ ++G+
Sbjct: 732 HNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGS 791
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ MY C ++D A+ +FD MPE
Sbjct: 792 SLIDMYMRCGKVDEARRVFDAMPE 815
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I AY + +++++F EM+ G RP+ T V+KA + + G +H
Sbjct: 515 VISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHC 574
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K +D +IG+ L+ MYA C E+ A+A+FD MP
Sbjct: 575 AVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMP 612
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP + ++ ++ AY K E ++LF +M+ +G++ ++LT+ ++K+
Sbjct: 403 ARKVFDE-MPERSVVSWTAMMNAYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCG 461
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G VH I K G S+ + + + YA C ++ A A+FD+M
Sbjct: 462 ERCDAKLGQQVHCCIVKGGW-SNVIVDSAIAHFYAQCGDVASASAIFDKM 510
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLI 71
K QL LK ++ +I S + F ++MP + ++I
Sbjct: 564 KAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMI 623
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
YA++ ++I LF +M + +NLT ++ A + +G +H+ I K +
Sbjct: 624 SGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSME 683
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ IG+TL+ Y C E +A + + MP+
Sbjct: 684 DNLQIGSTLVWFYCKCGEYTYAARILEAMPD 714
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAY 74
H QL A +K+ L + SR F L+ R + ++ P F +NT+IRA
Sbjct: 49 HLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVLYAERLVRHHPRPNSFMWNTVIRAL 108
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + ++ LF +ML + PD ++P ++ A + G G ++H + K+GL D
Sbjct: 109 SDGARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALKLGLAGDA 168
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
Y+ N + MYA+C D A ALF + PE
Sbjct: 169 YVRNATIAMYASCGRADEALALFGQCPE 196
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F+ MP + ++ ++ AYA+ + E++ LF M G+ P+ +V
Sbjct: 219 RSVFD-AMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNA---NVLVSVLGC 274
Query: 112 CLLIGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
C +G G VH I + G+ + + L+ MY C +D A+ +FD
Sbjct: 275 CASLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFD 324
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 27 LKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
LK LD N ++++ + S+ + R +F+ V L + T+I YA+ CS E++
Sbjct: 155 LKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 214
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+LFD+M+ GL P+ T V+ A Q + +G +H + + G+ +G L+ MY
Sbjct: 215 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 274
Query: 145 AACKEIDFAKALFDEMPE 162
A I A+ LFD + E
Sbjct: 275 AKNGAILMAQKLFDXISE 292
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP-LFAYNTL 70
+ H Q+ A + ++ H+ Y SR F S L + LFNN P F +NTL
Sbjct: 40 SMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTL 99
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
IRA+A + E++ L+ +M + + P T+PF++KA + VH+ + K GL
Sbjct: 100 IRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGL 159
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++ N L+R Y+ ++ A+ +FDE+ E
Sbjct: 160 DLNLHVVNGLVRAYSVSCDVRNARRVFDEVSE 191
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTY----IISRFILTSLPISLHFTRSLF 57
ISR + + + T H+L +L + L H+ +I+++ P S + S+F
Sbjct: 78 ISRALAS----AATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTS---SFSVF 130
Query: 58 NNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
P ++ +N++IRA E++ L+ E + L+PD T+P V+ A L
Sbjct: 131 RLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDF 190
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ S+H + +G SD YIGN L+ MY ++D A+ +F+EMP
Sbjct: 191 EMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 236
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + E++KLF +M+KT ++PD++TY ++ S Q + +G +H +
Sbjct: 443 SWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDL 501
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G +S+ + NTL+ MYA C E+ + +F+ M
Sbjct: 502 AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 536
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 54 RSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ V+ ++NT+I Y++ ESIKLF EM+ +PD LT +++A
Sbjct: 330 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHL 388
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VH + G D N L+ MYA C + ++ +F M
Sbjct: 389 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 436
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F + + + ++N+LI Y E+++++ G+ PD+ T V++A
Sbjct: 225 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRA 284
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H LI K+G+ D + N LL MY + + +FD+M
Sbjct: 285 CGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKM 336
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 56 LFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F N+ + +NT+I + + +++ M G+ PD T ++ C L
Sbjct: 532 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV---CSL 588
Query: 115 IGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
+ G +H IFK+GL SD +GN L+ MY+ C +
Sbjct: 589 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSL 627
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N +I YA+T + E+++LF EM+KT +RPD T VV A Q
Sbjct: 188 AQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ 247
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I +G VHS I G S+ I N L+ +Y C E++ A LF+
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFE 294
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMP 62
+L+ KT + A +KT L + Y +S+ I + +S HF S+F +
Sbjct: 7 SLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCV-LSPHFDGLPYAISVFETIQE 65
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L +NT+ R +A +S + ++ L+ M+ GL P+ T+PF++K+ + G +
Sbjct: 66 PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
H + K+G D Y+ +L+ MY ++ A+ +FD+
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQ 163
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + +L+ MYA C +I+ A+ +FD +
Sbjct: 361 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI 399
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
LH + LFN + PP A+ ++IR Y +S+ F ML +GL PD+ +P V+K+
Sbjct: 56 LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID-------FAKALFDEMP 161
+ + +G S+H I +VGL D Y GN L+ MY+ + ++ A +FDEM
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175
Query: 162 E 162
E
Sbjct: 176 E 176
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 39 SRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR 96
+R + T +S R +F +MP L ++NT+I A+ E++++ EM L+
Sbjct: 178 TRSVRTVSVLSEDSVRKIFE-MMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLK 236
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
PD+ T V+ + + I G +H + GL +D Y+ ++L+ MYA C +
Sbjct: 237 PDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRV 290
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I + E ++ F +ML ++P + ++ ++ A + +G +H I
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G + +I ++L+ MYA C I AK +FD M
Sbjct: 367 TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI---LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
Q+ A +KT L + + +S+ I S + + SLFN++ P LF +N++IR +
Sbjct: 47 QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSM 106
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ ++ F M+ +G+ P++ T+PF++K+ + G +H+ + K+G SD +I
Sbjct: 107 SLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFI 166
Query: 137 GNTLLRMYAACKEIDFAKALFDE 159
+L+ MYA E++ A+ +FD+
Sbjct: 167 HTSLINMYAQSGEMNNAQLVFDQ 189
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + + ++N +I YA+ S E++ LF++M K + P+ T V+ A Q
Sbjct: 214 ARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQ 273
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G S+ S I GL S+ + N L+ MY+ C ++ A+ LFD+M E
Sbjct: 274 SNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLE 324
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R LF++++ + ++N +I Y E++ LF EML +G+ P +T+ ++ +
Sbjct: 312 LQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPS 371
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I +G +H+ I K + +L+ +YA C I A+ +FD M
Sbjct: 372 CAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGM 423
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 59/96 (61%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT +R++A+ ++I LF + + + PD+ T FV+KA + L + G VH +
Sbjct: 81 WNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVE 140
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+GL S+ ++ N ++ +YA C EI A+ +FD+MP+
Sbjct: 141 KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQ 176
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I YA+ S E+I LF EM GL P+ +T V+ A + +G +H
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + NTL+ MY C ++ A +FD M E
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEE 308
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 59/96 (61%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT +R++A+ ++I LF + + + PD+ T FV+KA + L + G VH +
Sbjct: 81 WNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVE 140
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+GL S+ ++ N ++ +YA C EI A+ +FD+MP+
Sbjct: 141 KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQ 176
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I YA+ S E+I LF EM GL P+ +T V+ A + +G +H
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + NTL+ MY C ++ A +FD M E
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEE 308
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L R LF+N MP + ++ ++I Y++ S +++KLF EM+ ++PD +T V+
Sbjct: 298 NLTAARKLFDN-MPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVL 356
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + VG +VH I + G+ +D Y+GN+L+ MY C ++ A +F M +
Sbjct: 357 SACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKD 412
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLP-ISLHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
+L A ++T L + +++S I + SL +LH +FN + P L +N +IR +++
Sbjct: 35 ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQS 94
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+E+I ++ M G+ +NLT F+ KA + I G +H K+G S ++
Sbjct: 95 DHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVS 154
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
N L+ MYA C ++ FA+ +FD M
Sbjct: 155 NALIHMYAMCGQLGFAQKMFDGM 177
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L F + +F+ ++ L ++NTLI Y++ + E ++LFD M ++ D +T ++ A
Sbjct: 167 LGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILA 226
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S+ I + L D Y+GNTL+ MY + A+ +FD M E
Sbjct: 227 CSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRE 280
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF++N L+ YAK E++ L+ ML G+RPD T+P V++ + G VH
Sbjct: 160 LFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHL 219
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + G SD + N L+ MY C +I A+ +FD MP
Sbjct: 220 HVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP 257
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++ +I Y K ++++ + M G+ PD +T V+ A L+ G +H
Sbjct: 362 LVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE 421
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ GL S + N+L+ MY+ C+ ID A +F +P
Sbjct: 422 FADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESI 84
++ + + +++ I + F+ L + MP ++N +I Y + +E +
Sbjct: 222 IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGL 281
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+LF M + + PD +T V+ A + +G VH + K G ++ + N+L++M+
Sbjct: 282 RLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMH 341
Query: 145 AACKEIDFAKALFDEM 160
++ D A+ +F +M
Sbjct: 342 SSVGCWDEAEMVFSKM 357
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S E++ F +M+ + L+P+++T V+ A + + G +H+ + GL D ++ N
Sbjct: 479 SFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNA 537
Query: 140 LLRMYAACKEIDFAKALFD 158
LL MY C ++ A F+
Sbjct: 538 LLDMYVRCGRMEPAWNQFN 556
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 27 LKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
LK LD N ++++ + S+ + R +F+ V L + T+I YA+ CS E++
Sbjct: 153 LKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 212
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+LFD+M+ GL P+ T V+ A Q + +G +H + + G+ +G L+ MY
Sbjct: 213 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 272
Query: 145 AACKEIDFAKALFDEMPE 162
A I A+ LFD + E
Sbjct: 273 AKNGAILMAQKLFDTISE 290
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP-LFAYNTL 70
+ H Q+ A + ++ H+ Y SR F S L + LFNN P F +NTL
Sbjct: 38 SMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTL 97
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
IRA+A + E++ L+ +M + + P T+PF++KA + VH+ + K GL
Sbjct: 98 IRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGL 157
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++ N L+R Y+ ++ A+ +FDE+ E
Sbjct: 158 DLNLHVVNGLVRAYSVSCDVRNARRVFDEVSE 189
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P LF YN+ IR ++ + +S + + + GL PDNLTYPF+VKA Q + +G
Sbjct: 76 PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
H I + G SD Y+ N+L+ MY+ +I A +F
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVF 171
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP L ++ +I YAK S ++I+L+ + G+ + V+ +
Sbjct: 198 ARKLFDK-MPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCA 256
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G H I + + + +G L+ MYA C ID A +FD++P
Sbjct: 257 HLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLP 307
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF++N L+ YAK E++ L+ ML G+RPD T+P V++ + G VH
Sbjct: 160 LFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHL 219
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + G SD + N L+ MY C +I A+ +FD MP
Sbjct: 220 HVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP 257
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++ +I Y K ++++ + M G+ PD +T V+ A L+ G +H
Sbjct: 362 LVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE 421
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ GL S + N+L+ MY+ C+ ID A +F +P
Sbjct: 422 FADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESI 84
++ + + +++ I + F+ L + MP ++N +I Y + +E +
Sbjct: 222 IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGL 281
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+LF M + + PD +T V+ A + +G VH + K G ++ + N+L++M+
Sbjct: 282 RLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMH 341
Query: 145 AACKEIDFAKALFDEM 160
++ D A+ +F +M
Sbjct: 342 SSVGCWDEAEMVFSKM 357
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S E++ F +M+ + L+P+++T V+ A + + G +H+ + GL D ++ N
Sbjct: 479 SFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNA 537
Query: 140 LLRMYAACKEIDFAKALFD 158
LL MY C ++ A F+
Sbjct: 538 LLDMYVRCGRMEPAWNQFN 556
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTY----IISRFILTSLPISLHFTRSLF 57
ISR + + + T H+L +L + L H+ +I+++ P S + S+F
Sbjct: 19 ISRALAS----AATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTS---SFSVF 71
Query: 58 NNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
P ++ +N++IRA E++ L+ E + L+PD T+P V+ A L
Sbjct: 72 RLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDF 131
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ S+H + +G SD YIGN L+ MY ++D A+ +F+EMP
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 56 LFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F N+ + +NT+I + + +++ M G+ PD T ++ C L
Sbjct: 310 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV---CSL 366
Query: 115 IGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+ G +H IFK+GL SD +GN L+ MY+ C
Sbjct: 367 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKC 402
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIE-------SIKLFDEMLKTGLRPDNLT 101
L R +F + + + ++N+LI Y E SIKLF EM+ +PD LT
Sbjct: 166 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLT 224
Query: 102 YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+++A + G VH + G D N L+ MYA C + ++ +F M
Sbjct: 225 ITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 283
>gi|297738075|emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I+A+ I +I+++ +ML+ GL PDN T P+V+KA +G S H K+G
Sbjct: 1 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLG 60
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
D ++GNTL+ MY++ + A+ +FDEMP
Sbjct: 61 FWFDIFVGNTLIAMYSSFGNVRAARCIFDEMP 92
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP ++ +I YAK +C E +++F M TGL PD ++ A
Sbjct: 84 ARCIFDE-MPWHTAVSWTVMISGYAKNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACA 142
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH + ++G + L+ MYA C +D AK LFD M +
Sbjct: 143 HLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQ 194
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 53 TRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQ 111
T LFN P F++N IR + + E++ L+ +L+ G +PDN TYP + KA +
Sbjct: 32 TNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACAR 91
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
LI +G + + +G SD ++ N ++ + +C ++D A+ +FD+
Sbjct: 92 LSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDK 139
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 54 RSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + + L ++N++I Y + + E++ + EM G++PD +T VV + Q
Sbjct: 134 RKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQL 193
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G H I + GL + N L+ MY C ++ A+ LFD M
Sbjct: 194 EDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSM 241
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 52 FTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
+T LF+ MP + +N +I Y + E++ LF+EM + PD +T + A
Sbjct: 249 WTTMLFDE-MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSAC 307
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
Q + VG +H I K L + +G L+ MYA C +I A +F E+P
Sbjct: 308 SQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP 359
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRF-ILTSLPISLHFTRSLFNNV---MPPLFAYNTLIRAYAK 76
Q+ A +KT+ + ++R ++ + S H+ + +F V P F +N+ ++A A+
Sbjct: 46 QVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAE 105
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
I++I LF + + + PD T V++A L + G +H ++ KVG S+ Y+
Sbjct: 106 GDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYL 165
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N ++ +YA+C E+ A+ LF++MP+
Sbjct: 166 QNMIVHLYASCGEMGEARLLFEKMPQ 191
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I Y + + E+I LF +M + G++ + +T V+ A + +G +H
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + I NTL+ MY C ++ A +F+EM E
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEE 323
>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 653
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F YN LI + +++++ + EM G+ PD T+P ++K SD L V VH
Sbjct: 126 VFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAMELSDVK-KVHG 184
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L FK+G SD Y+G+ L+ Y+ ++ A+ +FDE+P+
Sbjct: 185 LAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPD 223
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF +N+++ + ++ LF+ ML +G+RPD +T V+ + + G +H
Sbjct: 328 LFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHG 387
Query: 124 LIFKVGL----HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL S+++I N+L+ MY C ++ A+ +FD M
Sbjct: 388 YMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSM 428
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ Y++ +++ +F +M + G+ T V+ A I G S+H L
Sbjct: 230 WNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAV 289
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G SD + N L+ MY K ++ A ++F+ M E
Sbjct: 290 KTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDE 325
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTY----IISRFILTSLPISLHFTRSLF 57
ISR + + + T H+L +L + L H+ +I+++ P S + S+F
Sbjct: 19 ISRALAS----AATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTS---SFSVF 71
Query: 58 NNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
P ++ +N++IRA E++ L+ E + L+PD T+P V+ A L
Sbjct: 72 RLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDF 131
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ S+H + +G SD YIGN L+ MY ++D A+ +F+EMP
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + E++KLF +M+KT ++PD++TY ++ S Q + +G +H +
Sbjct: 384 SWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDL 442
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G +S+ + NTL+ MYA C E+ + +F+ M
Sbjct: 443 AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 477
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 54 RSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ V+ ++NT+I Y++ ESIKLF EM+ +PD LT +++A
Sbjct: 271 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHL 329
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VH + G D N L+ MYA C + ++ +F M
Sbjct: 330 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F + + + ++N+LI Y E+++++ G+ PD+ T V++A
Sbjct: 166 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRA 225
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H LI K+G+ D + N LL MY + + +FD+M
Sbjct: 226 CGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKM 277
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 56 LFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F N+ + +NT+I + + +++ M G+ PD T ++ C L
Sbjct: 473 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV---CSL 529
Query: 115 IGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+ G +H IFK+GL SD +GN L+ MY+ C
Sbjct: 530 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKC 565
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ A LK +L +++ + I SL + ++FN + P + YNTLIRA+ + S
Sbjct: 35 QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+ + +F EM +G+ DN TYPF++KA + + V +H+ + K+G D ++ N
Sbjct: 95 EPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPN 154
Query: 139 TLLRMYAAC--KEIDFAKALFDEMPE 162
+L+ Y C + A+ +F+ M E
Sbjct: 155 SLIDSYFKCGLDGVAAARKVFEVMAE 180
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ R LF+ MP L + +I YA+ + ++I L+++M + GL+ D+ T ++
Sbjct: 261 MDMARILFDK-MPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILS 319
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A L+G+G VH+ I + + N L+ MYA C ++ A ++F M
Sbjct: 320 ACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGM 372
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 9 LIQLSKTAHHHHQLPALFL-----KTSLDHNTYIIS-RFILTSLPIS-------LHFTRS 55
L++L +T H HQ A F+ +SL+ N+ + F +TS+ S + + S
Sbjct: 424 LLKLCRTLKHLHQFHAQFITSGRISSSLNQNSVFANVLFAITSISPSASTSNVVVSYATS 483
Query: 56 LFNNVM-PPLFAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA--SDQ 111
+ + P F +NT+IR Y S+ S + F EM + + PD TYPFV KA + +
Sbjct: 484 VLRFITNPSTFCFNTIIRIYTLHEPLSLSSQRFFVEMRRRSVPPDFHTYPFVFKACAAKK 543
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + ++H + GL SD + NTL+R Y+ I A LFDE P+
Sbjct: 544 NGDLSLVKTLHCQALRFGLLSDLFTLNTLIRAYSLMAPIGSALQLFDENPQ 594
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF++ MP L ++N+LI YA+ + E+I LFDEM+ GL+PDN+ + A Q
Sbjct: 617 RELFDS-MPFRDLVSWNSLIAGYAQMNQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQ 675
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ G ++H K L D ++ L+ YA C ID A +F
Sbjct: 676 SGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTAMEIF 721
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 45 SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
SL +LH ++L ++ LF NTLIRAY+ + +++LFDE + + N+
Sbjct: 548 SLVKTLH-CQALRFGLLSDLFTLNTLIRAYSLMAPIGSALQLFDENPQRDVVTYNVLIDG 606
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+VKA C ++ S+ F+ D N+L+ YA + A +LFDEM
Sbjct: 607 LVKA---CEIVRARELFDSMPFR-----DLVSWNSLIAGYAQMNQCREAISLFDEM 654
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 47 PISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS----CSIESIKLFDEMLKTGLRPDNL 100
P L + R +F+ + P + YNTL+R YA+ C+ E+ ++F M++ G+ PD
Sbjct: 80 PAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTY 139
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
T+ ++KA G H + K G +Y+ TL+ MYA C ++ A+ +FD M
Sbjct: 140 TFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRM 199
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
+YN +I A ++S E++ LF EM GL+P ++T V+ A C L+G +G +H
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSA---CALLGALELGRWIH 262
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K+ L S + L+ MYA C ++ A +F +M
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A++ ++ AYA E+I +F+EM K G++PD++T+ V+ A ++ G +
Sbjct: 307 AWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM 366
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G+ S + + A +++ A DE+P
Sbjct: 367 REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELP 402
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 32/132 (24%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P LF++NT+IR ++++S ++ LF +ML + + P LTYP + KA Q L G
Sbjct: 86 PNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQ 145
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAA-------------------------------CKE 149
+H I K+GL D +I NT+L MYA C E
Sbjct: 146 LHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGE 205
Query: 150 IDFAKALFDEMP 161
ID ++ LFD+MP
Sbjct: 206 IDESRKLFDKMP 217
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 53 TRSLFNNVMP---PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
+R LF+ MP P+ ++N++I Y + E++KLF +M + ++P T ++ AS
Sbjct: 209 SRKLFDK-MPVKNPI-SWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNAS 266
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
Q + G +H I K L + + ++ MY C I A +F+++P
Sbjct: 267 AQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIP 318
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L +N+LIRAY++ E+IK + M GL PD T+ FV+KA L G ++
Sbjct: 90 PSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAI 149
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H I L D +IG L+ MY +D A+ +FD+MP
Sbjct: 150 HQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMP 189
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 52/95 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y C+ E+I F++M +RP+ +T+ ++ A ++ + H+ I
Sbjct: 599 SWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACI 658
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G S IGN+L+ MYA ++ +++ F EM
Sbjct: 659 IRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEM 693
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++ + A + E++ +F EM GL+PD +V A + +G +H
Sbjct: 394 LVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHC 453
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K + SD + TL+ MY CK +A LF+ M
Sbjct: 454 YVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRM 490
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++ T++ Y C E ++L DEM + ++ + ++ V A+ + + G VH+
Sbjct: 294 ISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNY 353
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
++G+ SD + ++ MYA C E+ AK F
Sbjct: 354 ALQLGMTSDIVVATPIVSMYAKCGELKKAKEFF 386
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
R +F+ MP + ++N +I +++S E++++F M ++ G+ PD+++ + A
Sbjct: 181 ARKVFDK-MPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAV 239
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + S+H + + + + N+L+ MY+ C E+ A +FD+M
Sbjct: 240 SRLEDVDSCKSIHGYVVRRCVFG--VVSNSLIDMYSKCGEVKLAHQIFDQM 288
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S + +LFN + + A+NTLI + K ++++F + +G++PD+ T ++
Sbjct: 479 SFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLS 538
Query: 108 ASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
A C L+ +G H I K G+ S+ ++ L+ MYA C + A+ LF
Sbjct: 539 A---CALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLF 588
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
+L A +K ++ N I S + H + MP A+ +I Y
Sbjct: 234 ELHAQIIKNCMEQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDAVAWTAMISGYNNLG 293
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++E++K DEML G+ P+ TY +KA + + G +H ++ K S+ ++G
Sbjct: 294 HNVEALKSLDEMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVNKTQAFSNVFVGC 353
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ MY C ++D A+ +FD MPE
Sbjct: 354 SLIDMYMRCGKVDEARRVFDAMPE 377
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I AY + +++++F +M+ G RP+ T +KA + + G +H
Sbjct: 77 VVSWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHG 136
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K D ++G+ L+ MYA C E+ A+A+FD+MP
Sbjct: 137 AIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPR 175
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I YA++ C E++ LF +M + ++LT ++ A I +G +H+ I
Sbjct: 181 WTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQII 240
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + IG+TL+ Y+ C E +A + + MP+
Sbjct: 241 KNCMEQNLQIGSTLVWFYSRCGEHTYAARILEAMPD 276
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
+ML TG+ ++LT+ ++K+ + +G VH + K G S+ + + + YA C
Sbjct: 2 DMLATGIEGNSLTFVCLLKSCGERCDAKLGQQVHCCVVKGGW-SNVIVDSAVAHFYAQCG 60
Query: 149 EIDFAKALFDEMP 161
++ A +FD M
Sbjct: 61 DVAAASTVFDRMA 73
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAY 67
T +Q T+ H L ++L+ I + I T +L + F + + P +
Sbjct: 74 TPLQTPPTSPSQHDL------STLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQW 127
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +I +Y K + ++ ++ ++ K DN P V+KA Q +G +H + K
Sbjct: 128 NFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 187
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
GL D ++GN L+ MY C +++A+ +FD+M E
Sbjct: 188 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 222
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 7 ETLIQLSKTAHHHHQL---PALFLKTSLDHNTYIISRFIL--TSLPI-SLHFTRSLFNNV 60
E LI L K+ H QL A + TS + + RF+ S P L ++R LF+ +
Sbjct: 28 EPLISLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLL 87
Query: 61 MPPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P + YN ++RAY+ + +E + ++ +M + G+R D L+ F VK+ + L + G
Sbjct: 88 TNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGI 147
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ IF G +D + +++ +Y+ C + + A LFDE+P+
Sbjct: 148 QIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQ 190
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQC 112
LF+ V + A+N LI + + +++ LF+ M +PD +T +++A
Sbjct: 184 LFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADL 243
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I + G +++ + N+L+ MY+ C +D A +FD+M E
Sbjct: 244 NALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTE 293
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 7 ETLIQLSKTAHHHH--QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMPP 63
E + L K + +H Q+ A +K L + YI + I + SL +L ++FN V P
Sbjct: 24 ENITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDP 83
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKT---GLRPDNLTYPFVVKASD-QCLLIGVG 118
+ YN LIRAY+ + S+ F +LK G+ DN TYPF++K + + +
Sbjct: 84 NVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLV 143
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+ + K+G + D ++ N+L+ Y C +++ A +F M E
Sbjct: 144 KMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEE 187
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ + L + T+I YA+ E++ L DEM K+GLR D+ + ++ A
Sbjct: 268 MDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAA 327
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++G+G +H + + N+ + MYA C +D A +F+ M
Sbjct: 328 CAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGM 379
>gi|297733980|emb|CBI15227.3| unnamed protein product [Vitis vinifera]
Length = 491
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A KT LD + I + +L S+P +L + R LF + P +F +NTLIR A+
Sbjct: 23 QVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAE 82
Query: 77 TSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S+ F EM + P D+ ++ F++KA+ + G +H GL + +
Sbjct: 83 SDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLF 142
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+G TL+ MY+ C + FAK +F+EM E
Sbjct: 143 VGTTLVSMYSECGFVAFAKKVFEEMFE 169
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP 63
R +E+ IQL A H LF+ T+L + Y F+ F + +F + P
Sbjct: 120 RSLESGIQLHCQAIVHGLDTHLFVGTTLV-SMYSECGFVA--------FAKKVFEEMFEP 170
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ A+N ++ A + E+I+LF EM ++G+RPD + + ++ A LI G
Sbjct: 171 NVVAWNAVVTACFRCGDVKEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKG 226
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIIS---RFILTSLPISLHFTRSLFNNV-MPPLFAYNT 69
KT QL A +KT+ + + RF S L + R +F ++ P F+YNT
Sbjct: 22 KTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNT 81
Query: 70 LIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
LIRA ++++ +++ +F EM++ + P+ T+P V KA + + G VH L K
Sbjct: 82 LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALF 157
GL SD+++ + ++RMY +C ++ A LF
Sbjct: 142 GLDSDEFVVSNVVRMYLSCGVMEDAHRLF 170
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + ++ +LI YA+ E++ L ML+ +P+ T+ ++KA+
Sbjct: 119 RRVFDG-MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+G +H+L K H D Y+G+ LL MYA C +D A A+FD++
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQL 226
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +A+ ++ +F EM + G + TY V A + G VH+ +
Sbjct: 233 SWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHM 292
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G ++GNT+L MYA + A+ +FD +
Sbjct: 293 IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRV 327
>gi|255541270|ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 474
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 15/167 (8%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLH-------FTRSLF- 57
L++ KTA +Q+ A + T NT + ++ IL+ S ++LH FTR +
Sbjct: 21 LVRKCKTASDINQVHARMITTGFIKNTSLTTKIILSLSSSPNVALHEFARYFFFTRHAYI 80
Query: 58 ---NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
P F +N +I+ ++ + +++ +F ML+ G+ D + V+KA + L
Sbjct: 81 IGAQEKEDP-FLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGL 139
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +H L+ K+ SD ++ N L+ +Y C+ ID+A+ +FD+MP
Sbjct: 140 VKEGMQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMP 186
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKAS 109
R F+N MP + A N ++ Y + +E++ +F +M + + L PDN T V+ A
Sbjct: 305 ARKFFDN-MPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATLLIVLSAI 363
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
Q I G +H I + G ++ +G L+ MY+ C + A +F+
Sbjct: 364 AQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSKCGSAENAMLVFE 412
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
FA+N+LI YA+ +++ L+ +M + G+ PDN T+P V+KA I +G +VH
Sbjct: 123 FAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRH 182
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + G D ++ N L+ MY+ C I A+ +FD++
Sbjct: 183 VVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQI 218
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAY 67
IQ+ + H H +++ + ++++ + + S + R +F+ + + ++
Sbjct: 173 IQIGEAVHRH------VVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSW 226
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK--ASDQCLLIGVGGSVHSLI 125
N+++ Y + E++ +FD+M++ G PD++ ++ +S + L +H +
Sbjct: 227 NSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKL-----HIHGWV 281
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ + I N+L+ MYA C +++ AK LF +MP+
Sbjct: 282 IRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQ 318
>gi|15223380|ref|NP_174012.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216976|sp|Q9ZVG8.1|PPR60_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g26900, mitochondrial; Flags: Precursor
gi|4262179|gb|AAD14496.1| Hypothetical protein [Arabidopsis thaliana]
gi|332192635|gb|AEE30756.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 572
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 26 FLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESI 84
+KT LD + + +S+ + S + + + S+F +V LF +NT+IR Y+ + +
Sbjct: 51 MVKTGLDKDDFAVSKLLAFSSVLDIRYASSIFEHVSNTNLFMFNTMIRGYSISDEPERAF 110
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+F+++ GL D ++ +K+ + L + +G +H + + G + N L+ Y
Sbjct: 111 SVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFTDLRNALIHFY 170
Query: 145 AACKEIDFAKALFDEMPE 162
C +I A+ +FDEMP+
Sbjct: 171 CVCGKISDARKVFDEMPQ 188
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPP 63
I L LS H L +K LD + ++I+ I + + R +F+ +
Sbjct: 237 ISDLGDLSGAESAH----VLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKD 292
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N +I YAKT E + L +M ++P++ T+ ++ + VG +V
Sbjct: 293 VVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVAD 352
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ + + D +G L+ MYA ++ A +F+ M +
Sbjct: 353 LLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKD 391
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +LI YA+ E+I L MLK +P+ T+ ++KA+ G+G +H+
Sbjct: 117 MVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHA 176
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L K H D Y+G+ LL MYA C +D A A+FD++
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKL 213
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +A+ ++ F EML+ G + TY V + + + G VH+ +
Sbjct: 220 SWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHM 279
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + GNTLL MYA + A+ +FD + +
Sbjct: 280 IKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDD 316
>gi|224136754|ref|XP_002322407.1| predicted protein [Populus trichocarpa]
gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 59/96 (61%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N+LI Y ++ +++ L+ +M + G+ PD T+P V+KA LI +G +VH
Sbjct: 78 FPWNSLIAGYTESGLYEDAMALYFQMEEEGVEPDQFTFPRVLKACGGIGLIRIGEAVHRD 137
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++G +D ++ N L+ MYA C +I A+ +FD++
Sbjct: 138 LVRLGFANDGFVLNALVDMYAKCGDIVKARRIFDKI 173
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + ++N+++ Y + E++ F M+ G+ D++ ++ A+
Sbjct: 166 ARRIFDKIDCKDSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAVSTIL-ANVS 224
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ V +H I + G+ D I N+L+ +Y+ +++D A+ LFD MP+
Sbjct: 225 SFEVAV--QIHGWIVRRGMEWDFSIANSLIAVYSNGRKLDRARWLFDHMPK 273
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
++ G+R D + +++ + I +G +H LI L + I + L+R+Y++C ++
Sbjct: 1 MEKGIRIDTQIFSSLLETCYRLNAIELGVKIHRLIPINLLRRNAGISSKLVRLYSSCGDV 60
Query: 151 DFAKALFDEM 160
+ A +FDEM
Sbjct: 61 EVAHQVFDEM 70
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 44/196 (22%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFT-------RSLFNNV 60
+L+ T Q+ A + + +N + +F+ T I+LH T + L +N
Sbjct: 14 SLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVAT---IALHNTTNLDYANKLLNHNN 70
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG---LRPDNLTYPFVVKASDQCLLIGV 117
P LF N++IRAY+K+S +S + +L + L PDN T+ F+V+ Q
Sbjct: 71 NPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVT 130
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMY-------------------------------AA 146
G VH + K G D ++ L+ MY A
Sbjct: 131 GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAK 190
Query: 147 CKEIDFAKALFDEMPE 162
C +IDFA+ +FDEMPE
Sbjct: 191 CGDIDFARKMFDEMPE 206
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ F R +F+ MP +N +I YA+ S E++ +F M G++ + ++ V+
Sbjct: 194 IDFARKMFDE-MPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLS 252
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A ++ G VH+ + + + +G L+ MYA C +D A +F M E
Sbjct: 253 ACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKE 307
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLP-ISLH-FTRSLF 57
+ R +E L++ H Q+ ++K +L ++Y++++ + +T+LP + LH + R LF
Sbjct: 11 VVRILERCSSLNQAKEVHAQI---YIK-NLQQSSYVLTKLLRLVTALPHVPLHSYPRLLF 66
Query: 58 NNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ + P FA+ LIRAYA +++ + M K + P + T+ + A
Sbjct: 67 SQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSA 126
Query: 117 VGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +H+ +G SD Y+ N ++ MY C + A+ +FDEMPE
Sbjct: 127 LGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPE 173
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+F+Y+++I +A + +IKLF +ML+TG++P+++T+ V+ A L+ G
Sbjct: 310 VFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQG 364
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
FA+N+LI YA+ +++ L+ +M + G+ PDN T+P V+KA I +G +VH
Sbjct: 123 FAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRH 182
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + G D ++ N L+ MY+ C I A+ +FD++
Sbjct: 183 VVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQI 218
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAY 67
IQ+ + H H +++ + ++++ + + S + R +F+ + + ++
Sbjct: 173 IQIGEAVHRH------VVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSW 226
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK--ASDQCLLIGVGGSVHSLI 125
N+++ Y + E++ +FD+M++ G PD++ ++ +S + L +H +
Sbjct: 227 NSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKL-----HIHGWV 281
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ + I N+L+ MYA C +++ AK LF +MP+
Sbjct: 282 IRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQ 318
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 8/135 (5%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSI---ESIKLFDEML 91
T I+ + + P + TR + P F +NTLIR YA+++ + ++++L+ M+
Sbjct: 61 TNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMM 120
Query: 92 ----KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
KT + PDN T+P V+KA + G VH+ + K G SD YI N+L+ YA C
Sbjct: 121 TMEEKTAV-PDNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATC 179
Query: 148 KEIDFAKALFDEMPE 162
+D A+ +F +M E
Sbjct: 180 GCLDLAEKMFYKMSE 194
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A KT LD + I + +L S+P +L + R LF + P +F +NTLIR A+
Sbjct: 23 QVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAE 82
Query: 77 TSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S+ F EM + P D+ ++ F++KA+ + G +H GL + +
Sbjct: 83 SDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLF 142
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+G TL+ MY+ C + FAK +F+EM E
Sbjct: 143 VGTTLVSMYSECGFVAFAKKVFEEMFE 169
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I +A E+ F E+ + G+RP+ ++ + A I G +H I
Sbjct: 236 SWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFI 295
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + N LL Y+ C + A+ +F+ MPE
Sbjct: 296 EKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPE 332
>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 652
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 56 LFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+F +F YN LI + ++++ ++ EM G+ PD T+P ++K SD +
Sbjct: 117 VFGGSERDVFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKGSDAMEVS 176
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
V VH+L FK+G SD Y+G+ L+ Y+ ++ A+ +FDE+P+
Sbjct: 177 DVK-KVHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPD 222
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF +N+++ + ++ LF+ ML +G+RPD +T V+ + + G +H
Sbjct: 327 LFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHG 386
Query: 124 LIFKVGL----HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL S+ +I N+L+ MY C ++ A+ +FD M
Sbjct: 387 YMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSM 427
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ Y+ +++ +F +M + G+ T V+ + + G S+H L
Sbjct: 229 WNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAV 288
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G S + N L+ +Y K ++ A ++F+ M E
Sbjct: 289 KMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDE 324
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP---LFAY 67
LS+ QL A L + + + +R + L + + R +F+ MP +F +
Sbjct: 80 LSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDE-MPNQGNVFLW 138
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
N LIRAYA+ +I+L+ ML G ++PDN TYP V+KA L + G VH +
Sbjct: 139 NVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVM 198
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ +D ++ L+ MYA C +D A A+F++
Sbjct: 199 RTNWATDVFVCTGLIDMYAKCGCMDEAWAVFND 231
>gi|255565109|ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537254|gb|EEF38886.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 555
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L+ R++FN + +YN LI Y++T+ S ES+ LF EM G+ D ++Y V+ A
Sbjct: 365 LNLARNVFNISLRDEVSYNILIVGYSQTTNSSESLSLFLEMGLVGMERDVVSYMGVIAAC 424
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G +H+L+ + LH +I N+LL Y C +ID A +F + E
Sbjct: 425 ASLVALKQGEEIHALVVRKNLHMHIFIANSLLDFYTKCGKIDLACKIFYRISE 477
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M++ G+RPD+ T+PFV+KA L + G +H +FK+G D ++GNTLL Y
Sbjct: 1 MVRNGIRPDDHTFPFVLKACADNLNVQKGMEIHGCVFKLGFDFDVFVGNTLLLFYGNTGY 60
Query: 150 IDFAKALFDEMPE 162
+ AK +FDEM E
Sbjct: 61 LSDAKKVFDEMLE 73
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLT----YPFVVKASDQCLLIGVGGS 120
++NTL+ A++ ++++ LF EM L++G RP+ +T P D+ V
Sbjct: 78 SWNTLLGAFSVNGFYLKALDLFYEMNLRSGFRPNMVTVVSVLPVCAALEDEV----VASE 133
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K+GL S + N L+ +Y C + ++ +FDEM E
Sbjct: 134 IHCYVVKIGLDSQVTLCNALVDVYGKCGNLKSSRRVFDEMME 175
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 51/93 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ +A+ + +I+L +M G P+ +T+ + A + + G +H+
Sbjct: 281 SWNAMVANFAQNRFELAAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHARA 340
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
F++G + D+++ N L MYA C ++ A+ +F+
Sbjct: 341 FRMGCYFDQFVSNALTDMYAKCGFLNLARNVFN 373
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L +R +F+ +M ++N +I + A + ++++ F M+ ++P+++T ++
Sbjct: 162 NLKSSRRVFDEMMERNEVSWNAIITSLAYMEHNKDALEAFRLMINEEVKPNSVTIASILP 221
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H + G+ SD +I N+L+ MYA A +F M E
Sbjct: 222 VLVELEHFDLGKEIHGFSLRFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTE 276
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL + R +FN + P F N++IR Y + ++I + M+ GL PD T+P + K
Sbjct: 89 SLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFK 148
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ C ++ G +H K+G SD YI NTL+ MY+ C + A+ +FD+M
Sbjct: 149 S---CGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 198
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 52 FTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
R LFN MP LF +N +I + + S E++ LF+EM +G++ D +T ++ A
Sbjct: 291 LARDLFNK-MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIAC 349
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H I K + D +G L+ MYA C I+ A +F EMPE
Sbjct: 350 THLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 402
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 53 TRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ V + ++ T+I AYA+ E+IKLF M ++P+ +T V+ A +
Sbjct: 191 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACAR 250
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VH I + G+ + + L+ +Y C A+ LF++MPE
Sbjct: 251 SRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPE 301
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF++N L+ YAK E++ L+ ML G++PD T+P V++ + G +H
Sbjct: 172 LFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHV 231
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + G SD + N L+ MY C +++ A+ +FD+MP
Sbjct: 232 HVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMP 269
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
++N +I Y + +E ++LF M+K + PD +T V+ A C L+G +G +H
Sbjct: 275 SWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITA---CELLGDDRLGRQIH 331
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + D I N+L+ MY++ I+ A+ +F
Sbjct: 332 GYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVF 366
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++ +I Y ++++ + M G+ PD +T V+ A + +G ++H
Sbjct: 374 LVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHE 433
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + GL S + N+L+ MYA CK ID A +F
Sbjct: 434 VAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIF 467
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I + E++ F EM++ L+P+++T V+ A + + G +H+
Sbjct: 475 IVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHA 533
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ G+ D ++ N +L MY C +++A F
Sbjct: 534 HALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF 567
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ LI YA+ E++ L +ML+ RP T+ +KA+ C G+G +H+L
Sbjct: 130 SWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALA 189
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
K L D Y+G+ LL MYA C+++D A +FD
Sbjct: 190 VKYNLDEDVYVGSALLDMYARCQQMDMAIRVFD 222
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ AL +K +LD + Y+ S + + + + +F+ + ++N LI +A+
Sbjct: 184 QMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKG 243
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F EM + G + TY V A + + G VH+ + K G ++ N
Sbjct: 244 DGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVAN 303
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
T+L MYA + A+ +FD + +
Sbjct: 304 TILGMYAKSGSMVDARKVFDRVDQ 327
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
++ D +L L P Y ++ A Q + ++HS + + L D ++ N+L+ M
Sbjct: 47 LRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHM 106
Query: 144 YAACKEIDFAKALFDEMP 161
Y C + A+ +FD +P
Sbjct: 107 YCKCGAVSDARHVFDGIP 124
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAY 67
T +Q T+ H L ++L+ I + I T +L + F + + P +
Sbjct: 39 TPLQTPPTSPSQHDL------STLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQW 92
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +I +Y K + ++ ++ ++ K DN P V+KA Q +G +H + K
Sbjct: 93 NFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 152
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
GL D ++GN L+ MY C +++A+ +FD+M E
Sbjct: 153 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 187
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R+LF++ + + ++ AYA+ +C ++ LFD+M +G+RP +T +V
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVT---IVSL 365
Query: 109 SDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
C + G +G VHS I K + D + L+ MYA C +I+ A LF E
Sbjct: 366 LSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE 419
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLF 65
+ QL K H LK LD + ++ + +L + + + R +F+ +M +
Sbjct: 138 SWTQLGKEIH------GFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVV 191
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+IR+ ++ +++L EM +RP + +V + +G ++H+ +
Sbjct: 192 SWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYV 251
Query: 126 FKVGLHSDKYIG----NTLLRMYAACKEIDFAKALFDEMPE 162
+ +++++G LL MYA C + A+ LF+ + +
Sbjct: 252 IRNS--NNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQ 290
>gi|224081004|ref|XP_002335572.1| predicted protein [Populus trichocarpa]
gi|222834476|gb|EEE72953.1| predicted protein [Populus trichocarpa]
Length = 219
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ F R +F+ + L ++N++I Y+K + E+I LF EM + G PD +T V+
Sbjct: 96 EIGFARKVFDEMGERDLVSWNSMISGYSKMGFAKEAIGLFMEMKEEGFEPDEMTLVNVLG 155
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A C +G+G V L+ + + + Y+G+ L+ MY C ++ A+ +FD MP
Sbjct: 156 A---CGDLGLGRWVEGLVLEKKMEVNSYVGSALIVMYGKCGDLISARRVFDSMP 206
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 27/115 (23%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + +FN + P ++A+N +IR A T K +D GL N+
Sbjct: 21 DLAYASLVFNQLTKPNIYAFNVMIRGLATT------WKKYDFWNIWGLVHGNID------ 68
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H L+FK GL+ D+++ ++L M A C EI FA+ +FDEM E
Sbjct: 69 --------------HCLVFKAGLYGDEHVNHSLTTMDARCGEIGFARKVFDEMGE 109
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
LH R LF+ + P + YNT+ R YA + + ++ L ML+ G PD T+PF++KA
Sbjct: 38 LHHARLLFDAIHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKA 97
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H K GL ++ N+L+ +Y + +D A+ +FD M
Sbjct: 98 CSALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGM 149
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP + ++ LI YA+ E+I L +ML+ RP+ T+ ++KA+
Sbjct: 114 ARHVFDK-MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATG 172
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
C +G +H+L K D Y+G+ LL MYA C+++D A +FD +
Sbjct: 173 ACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTS 78
Q+ AL +K + D + Y+ S + + + + +F+ V ++N LI +A+ +
Sbjct: 182 QMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKA 241
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F EM + G + TY + A + + G VH+ + K G ++GN
Sbjct: 242 DGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGN 301
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
T+L MYA + A+ +FD M +
Sbjct: 302 TMLGMYAKSGSMVDARKVFDRMDK 325
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 89 EMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
++L G L P Y ++ A Q + ++H+ + + L D ++ N+L+ MY C
Sbjct: 49 DLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKC 108
Query: 148 KEIDFAKALFDEMP 161
+ A+ +FD+MP
Sbjct: 109 GAVSDARHVFDKMP 122
>gi|297844350|ref|XP_002890056.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
lyrata]
gi|297335898|gb|EFH66315.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNN 59
I+ Q T QL++ H L + SL +Y SR I T L ++ R +F++
Sbjct: 12 IASQALTFTQLNQIHAH------LIVSNSLHRQSYWASRLISCCTRLRAPPYYARLVFDS 65
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
V P +F N++ R +++ + ++++L+++ + G+ PD +P V+K++ + G
Sbjct: 66 VTFPNVFLVNSMFRYFSQMDMANDALRLYEQRSRCGIMPDTFFFPVVIKSAGK-----FG 120
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+L+ K+G+ D Y+ N ++ MYA + ++ A+ +FD++
Sbjct: 121 VLFQALVEKMGIFKDPYVRNVIMDMYAKHESVESARKVFDQI 162
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ MP + ++N ++ Y++ + E+++LF++ML+ G+RP+ T+ V+ A C
Sbjct: 224 DCMPEKSVVSWNAMLSGYSQNGFTEETLRLFNDMLRLGVRPNETTWVIVISA---CSFRA 280
Query: 117 VGGSVHSLIFKVG---LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
HSL+ +G + + ++ LL M+A C++I A+ +F+E+
Sbjct: 281 DPSLAHSLVKLIGEKRIRLNFFVKTALLDMHAKCRDILSARRIFNEL 327
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
R LF+ MP + ++N++I YA +I+ F++M+ G +PD +T V+ A
Sbjct: 352 ARQLFD-TMPKRNVVSWNSVIAGYAHNGQPALAIEFFEDMIDYGDSKPDEVTMISVLSAC 410
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G + I K + + +L+ MYA C + AK +FDEM E
Sbjct: 411 GHMGDLELGDCIVDYIGKKQIKLNDSGYRSLIFMYARCGNLWEAKRVFDEMKE 463
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNTL A+A ++++ L +M G+ PD +TY V+ A ++ L+ G + I
Sbjct: 468 SYNTLFSAFAANGDGVKTLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLEEGQRIFKSI 527
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 52 FTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
R LF+++ P LF +N +I+ Y +++++FD M+ +G PD T+P V+KA
Sbjct: 135 LARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKAC 194
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ VG +H G S+ ++ N+LL MY C ++ A+ +F+ M
Sbjct: 195 SVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVM 245
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 52 FTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +FN ++ + ++NT+I + + E++ +F+ M+ + PD+ T + +
Sbjct: 237 LARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCG 296
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH L+ K L + N L+ MY+ C ID A +F E E
Sbjct: 297 YLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKE 348
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ + E++ LF ML + ++ T+ V+ A + ++HS +
Sbjct: 427 WNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLV 486
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S + L+ MY+ C +D+A +FDE+P
Sbjct: 487 RSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPN 522
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L R LF+N MP + ++ ++I Y++ S +++KLF EM+ ++PD +T V+
Sbjct: 175 NLTAARKLFDN-MPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVL 233
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + VG +VH I + G+ +D Y+GN+L+ MY C ++ A +F M +
Sbjct: 234 SACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKD 289
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L F + +F+ ++ L ++NTLI Y++ + E ++LFD M ++ D +T ++ A
Sbjct: 75 LGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILA 134
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S+ I + L D Y+GNTL+ MY + A+ LFD MP+
Sbjct: 135 CSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPK 188
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ S+H K+G S ++ N L+ MYA C ++ FA+ +FD M
Sbjct: 42 ISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGM 85
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 52 FTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
R LF+++ P LF +N +I+ Y +++++FD M+ +G PD T+P V+KA
Sbjct: 135 LARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKAC 194
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ VG +H G S+ ++ N+LL MY C ++ A+ +F+ M
Sbjct: 195 SVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVM 245
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 52 FTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +FN ++ + ++NT+I + + E++ +F+ M+ + PD+ T + +
Sbjct: 237 LARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCG 296
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH L+ K L + N L+ MY+ C +D A +F E E
Sbjct: 297 HLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKE 348
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 22 LPALFLKTSLDHNTYIISRFI-----LTSLPISLH-FTRSLFNNVMPPLFAYNTLIRAYA 75
L A ++ LD + +++ I ++ S F ++ +P +N L+
Sbjct: 408 LHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVP----WNALLSGLI 463
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ E++ LF ML + ++ T+ V+ A + ++HS + + G S
Sbjct: 464 HNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIA 523
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L+ MY+ C +D+A +FDE+P
Sbjct: 524 VITGLIDMYSKCGSLDYAHKIFDEIPN 550
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 43/94 (45%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ + ++I Y + ++ L M G+ P+ +T ++ A + G S+H+
Sbjct: 351 VITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHA 410
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + L SD + L+ MYA C + ++ +F
Sbjct: 411 WVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVF 444
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+ ++ P YNT+ RAY + C E+++L ML+ G+ P+ T PFVVKA +
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+VH + K+G ++ N LL YA+ + ++ FDEM
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEM 106
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL +R F+ + + ++N++I YA+ + E+ LF EM + G D T ++
Sbjct: 95 SLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLL 154
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A Q + G VH L+ G D +G L+ MY+ C ++ A+ F+ MP
Sbjct: 155 ACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMP 208
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT+I Y + E++ L+ +M G PD T V+ A + + VG VH L
Sbjct: 245 SWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVH-LY 303
Query: 126 FKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +H+ D + N+LL MYA C ++D A LF EM
Sbjct: 304 IRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREM 339
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 8/155 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYI---ISRFILTSLPISLHFTRSLFNNVMPP--L 64
I+ K+ Q+ A +KT H+ I I R TS + + S+F+ +P
Sbjct: 22 IKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQ-LPERNC 80
Query: 65 FAYNTLIRAYAKTSCS-IESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
FA+NT+IRA A+T ++++ +F +ML + + P+ T+P V+KA + G VH
Sbjct: 81 FAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVH 140
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
L+ K GL D+++ LLRMY C ++ A LF
Sbjct: 141 GLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF 175
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVV 106
+L R LF+ + + ++N +I YA+ E+I++F M++ G + P+ +T V+
Sbjct: 214 NLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVL 273
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + ++ +G VH K + D +G+ L+ MYA C I+ A +F+ +P+
Sbjct: 274 PAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQ 329
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94
+IS++ PIS + S+F ++ P ++ +N++IRA +++ + EM +
Sbjct: 60 LISKYAQVKDPIS---SVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKK 116
Query: 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154
L+PD T+P V+ + + L + +G VH ++G SD YIGN L+ MY+ ++D A+
Sbjct: 117 LQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNAR 176
Query: 155 ALFDEM 160
+F+EM
Sbjct: 177 YVFEEM 182
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+LI Y ++ E ++ F +M+K +PD++T+ ++ Q I G +H +
Sbjct: 391 WNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVI 449
Query: 127 KVGLHSDKYIGNTLLRMYAACKEID 151
K G ++ IGN+LL +YA C E+D
Sbjct: 450 KFGFEAELIIGNSLLDVYAKCGEMD 474
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI Y +++ ++ + TG+ PD T V+ A + + G +VH +I
Sbjct: 189 SWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI 248
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G+ D IGN LL MY + + A+ +F +M
Sbjct: 249 EKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKM 283
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+I YA+ S+KLF +M+ G PD L+ ++A Q + VG VH +
Sbjct: 291 WNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI 349
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G D N L+ MYA C ++ A+ +FD
Sbjct: 350 GSGFECDTVACNILIDMYAKCGDLLAAQEVFD 381
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
+ ++NT+I + ++ +EM GL PD T V+ C L+ V G
Sbjct: 488 IISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEAT---VLGILPMCSLLAVRRQGKE 544
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H IFK G S+ IGN L+ MY+ C ++ +F M E
Sbjct: 545 IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKE 586
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94
+IS++ PIS + S+F ++ P ++ +N++IRA +++ + EM +
Sbjct: 60 LISKYAQVKDPIS---SVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKK 116
Query: 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154
L+PD T+P V+ + + L + +G VH ++G SD YIGN L+ MY+ ++D A+
Sbjct: 117 LQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNAR 176
Query: 155 ALFDEM 160
+F+EM
Sbjct: 177 YVFEEM 182
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+LI Y ++ E ++ F +M+K +PD++T+ ++ Q I G +H +
Sbjct: 391 WNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVI 449
Query: 127 KVGLHSDKYIGNTLLRMYAACKEID 151
K G ++ IGN+LL +YA C E+D
Sbjct: 450 KFGFEAELIIGNSLLDVYAKCGEMD 474
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI Y +++ ++ + TG+ PD T V+ A + + G +VH +I
Sbjct: 189 SWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI 248
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G+ D IGN LL MY + + A+ +F +M
Sbjct: 249 EKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKM 283
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+I YA+ S+KLF +M+ G PD L+ ++A Q + VG VH +
Sbjct: 291 WNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI 349
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G D N L+ MYA C ++ A+ +FD
Sbjct: 350 GSGFECDTVACNILIDMYAKCGDLLAAQEVFD 381
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
+ ++NT+I + ++ +EM GL PD T V+ C L+ V G
Sbjct: 488 IISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEAT---VLGILPMCSLLAVRRQGKE 544
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H IFK G S+ IGN L+ MY+ C ++ +F M E
Sbjct: 545 IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKE 586
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 40 RFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 98
RF +S +L+ R L + + ++N LIR+YA E+I + EM G+ PD
Sbjct: 700 RFCASSPLGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPD 759
Query: 99 NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
LT+P ++KA G + + K GL + Y+ NT++ Y +CK I A+ +FD
Sbjct: 760 KLTFPILLKACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFD 819
Query: 159 EM 160
EM
Sbjct: 820 EM 821
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESI 84
+K LD N Y+ + I + R +F+ + + ++N ++ A +S
Sbjct: 787 MKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSF 846
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
LF +M +G PD T ++ A + + G VHS + + G+ + +G L+ MY
Sbjct: 847 GLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMY 906
Query: 145 AACKEIDFAKALFDEMPE 162
A C + A +F M E
Sbjct: 907 AKCGAVCEASLVFHRMLE 924
>gi|15223763|ref|NP_172899.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806395|sp|Q9M9R6.2|PPR43_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g14470
gi|332191047|gb|AEE29168.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 540
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 14/164 (8%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNN 59
I+ Q T QL++ H QL + SL +Y SR I T L ++TR +F++
Sbjct: 12 IASQALTFPQLNQI---HAQL---IVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDS 65
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
V P +F N++ + ++K + + ++L+++ + G+ PD ++P V+K++ + G
Sbjct: 66 VTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGR-----FG 120
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+L+ K+G D Y+ N ++ MY + ++ A+ +FD++ +
Sbjct: 121 ILFQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQ 164
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R F+ MP + ++N ++ YA+ + ++++LF++ML+ G+RP+ T+ V+
Sbjct: 214 LENARKYFDR-MPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVIS 272
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + S+ LI + + + ++ LL M+A C++I A+ +F+E+
Sbjct: 273 ACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNEL 325
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASD 110
R LF+ MP + ++N+LI YA + +I+ F++M+ G +PD +T V+ A
Sbjct: 351 RQLFDT-MPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACG 409
Query: 111 QCLLIGVGGSVHSLIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G + I K + L+ Y +L+ MYA + AK +FDEM E
Sbjct: 410 HMADLELGDCIVDYIRKNQIKLNDSGY--RSLIFMYARGGNLWEAKRVFDEMKE 461
Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNTL A+A +E++ L +M G+ PD +TY V+ A ++ L+ G + I
Sbjct: 466 SYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSI 525
>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Glycine max]
Length = 723
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFIL----TSLPISLHFTRSLFNNVMPPLFAYNT 69
K+ QL A + LD N ++SR + +L + F +N + PL +N
Sbjct: 95 KSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTE-SSNTLDPLH-WNL 152
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
LI AY + +E++ ++ ML + PD TYP V+KA + L G VH I
Sbjct: 153 LISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASS 212
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ ++ N L+ MY +++ A+ LFD MP
Sbjct: 213 MEWSLFVHNALVSMYGRFGKLEIARHLFDNMP 244
>gi|255554336|ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542804|gb|EEF44341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTL 70
L+ T H Q+ ++ + T +IS + + +P + ++ +FN++ + + +N+L
Sbjct: 43 LTLTQQCHAQIFSMDFSQNPFIATKLISAYAICGVPTA---SKLVFNSLEVKSVPLWNSL 99
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
I Y K + ES LF +M G+ PD+ T + K + + G +H L K+G
Sbjct: 100 ISGYVKNQENTESFSLFCQMCSFGVLPDDYTLATLSKVCGEIGHLIAGKIIHGLSLKIGF 159
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D + N+L+ MY C E A LFDEMPE
Sbjct: 160 VLDTVVANSLMSMYCKCGEFSEALKLFDEMPE 191
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++ + +I Y + E++ LF EM K G+ P+ +T V+ + G +H
Sbjct: 304 VYVWTAMINGYVQNGALEEALTLFHEMQAKDGVEPNRVTLVSVLPICSSLAGLPGGKQIH 363
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ L+ D + N L+ MY+ C +++A+ +FD
Sbjct: 364 GYAIRKRLNFDASLSNALIDMYSKCGSLNYARRVFD 399
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 49 SLHFTRSLFNN--VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL++ R +F+N +++++I Y E++ L+D+ML+ G +PD +T V+
Sbjct: 390 SLNYARRVFDNGTFRRDAISWSSIISGYGLHGKGEEAVFLYDKMLQLGNKPDQITVIGVI 449
Query: 107 KASDQCLLI 115
A + L+
Sbjct: 450 SACGRSGLV 458
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ ++ + A+N +I YA+ S E+I LF M G+RPD +T V+ A
Sbjct: 309 RRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAV 368
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G + + GL+S+ Y+G L+ MYA C ++D A +F +MP
Sbjct: 369 GALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMP 417
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F+YN IR +A +S S++LF ML++ +RPD+ T PF++ A+ + + +
Sbjct: 116 PTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+L+ K+GL+ + ++L+ MY+ + A+ +FD +P
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIP 214
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 12 LSKTAHHHHQLPALFLKTSLD-HNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNT 69
L++ AH AL K L+ H+ + S + S R +F+ + + ++N
Sbjct: 170 LARAAH------ALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNA 223
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS--DQCLLIGVGGSVHSLIFK 127
+++AY + + E ++F +M+K G N+ VV A+ DQ L+ +G V +
Sbjct: 224 MMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLV-LGRWVEEWSWS 282
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ D +G+ LL MY C EI A+ +FD +
Sbjct: 283 ARMEMDSLVGSALLGMYEKCGEIAEARRVFDTI 315
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ ++ + A+N +I YA+ S E+I LF M G+RPD +T V+ A
Sbjct: 309 RRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAV 368
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G + + GL+S+ Y+G L+ MYA C ++D A +F +MP
Sbjct: 369 GALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMP 417
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F+YN IR +A +S S++LF ML++ +RPD+ T PF++ A+ + + +
Sbjct: 116 PTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+L+ K+GL+ + ++L+ MY+ + A+ +FD +P
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIP 214
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 12 LSKTAHHHHQLPALFLKTSLD-HNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNT 69
L++ AH AL K L+ H+ + S + S R +F+ + + ++N
Sbjct: 170 LARAAH------ALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNA 223
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS--DQCLLIGVGGSVHSLIFK 127
+++AY + + E ++F +M+K G N VV A+ DQ L+ +G V +
Sbjct: 224 MMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLV-LGRWVEEWSWS 282
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ D +G+ LL MY C EI A+ +FD +
Sbjct: 283 ARMEMDSLVGSALLGMYEKCGEIAEARRVFDTI 315
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
H H P+L +K ++ + + P S TR +F+ + + +N +IR+Y
Sbjct: 1054 HDLHSNPSLGIK--------LMRAYAVCGEPWS---TRHIFDEIPKKNVVFFNVMIRSYV 1102
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+++ +F M G+ PD+ TYP V+KAS + VG +H+ + +VGL + +
Sbjct: 1103 NNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVF 1162
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+GN L+ MY C + A + DZMP
Sbjct: 1163 VGNGLISMYGKCGCLVEACRVLDZMP 1188
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y S E++ +F +M + PD ++ V+ A + +G +H
Sbjct: 1260 LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHE 1319
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + L + + N L+ MYA C +++A+ +FD+M
Sbjct: 1320 YVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQM 1356
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ ++ + A+N +I YA+ S E+I LF M G+RPD +T V+ A
Sbjct: 309 RRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAV 368
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G + + GL+S+ Y+G L+ MYA C ++D A +F +MP
Sbjct: 369 GALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMP 417
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F+YN IR +A +S S++LF ML++ +RPD+ T PF++ A+ + + +
Sbjct: 116 PTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+L+ K+GL+ + ++L+ MY+ + A+ +FD +P
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIP 214
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 12 LSKTAHHHHQLPALFLKTSLD-HNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNT 69
L++ AH AL K L+ H+ + S + S R +F+ + + ++N
Sbjct: 170 LARAAH------ALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNA 223
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS--DQCLLIGVGGSVHSLIFK 127
+++AY + + E ++F +M+K G N+ VV A+ DQ L+ +G V +
Sbjct: 224 MMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLV-LGRWVEEWSWS 282
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ D +G+ LL MY C EI A+ +FD +
Sbjct: 283 ARMEMDSLVGSALLGMYEKCGEIAEARRVFDTI 315
>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++++I +A+ S++ +M+ LRPD+ P K+ +G SVH L
Sbjct: 84 WSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSM 143
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K G +D ++G++L+ MYA C EI +A+ +FDEMP
Sbjct: 144 KTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMP 178
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIE 82
L +KT D + ++ S + + + + + R +F+ + + + ++ ++ YA+ + E
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEE 200
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
++ LF E L L ++ ++ V+ L+ +G + L K S ++G++L+
Sbjct: 201 ALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVS 260
Query: 143 MYAACKEIDFAKALFDEMP 161
+Y+ C +++ A +FDE+P
Sbjct: 261 LYSKCGDLEGAYQVFDEVP 279
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLF 65
TL++L + Q+ L +K+S D ++++ S + L S L +F+ V M L
Sbjct: 231 TLLELGR------QIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLG 284
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +++A A+ S + + I+LF M +G++P+ +T+ V+ A L+ G L+
Sbjct: 285 IWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLM 344
Query: 126 FKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + +DK+ +L+ M +++ A + MP
Sbjct: 345 KESRIEPTDKHYA-SLVDMLGRAGKLEEALEIVTNMP 380
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFV 105
+L RSLF+ MP LF++N +I Y + E++KLF EM T L PD +T V
Sbjct: 231 NLDSARSLFD-AMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSV 289
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ A + +GG VH + + L +G L+ MYA C EI ++ +FD MPE
Sbjct: 290 LPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPE 346
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLH-----------FTRSLFNNV--MPPLFAYNTLIRA 73
L+ +L+ N + ++FI T I+L R +F++ F N++I+A
Sbjct: 2 LRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKA 61
Query: 74 YAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
Y ES L+ ++ + T PD+ T+ + K+ + I G +HS + VG
Sbjct: 62 YVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCL 121
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEM 160
D Y L+ MYA ++D A+ LFDEM
Sbjct: 122 DLYAATALVDMYAKFGKMDCARKLFDEM 149
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LIR+YA E+I + EM G+ PD LT+P ++KA G + +
Sbjct: 86 SWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFNEGRKIQVDV 145
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL + Y+ NT++ Y +CK I A+ +FDEM
Sbjct: 146 MKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEM 180
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 18/146 (12%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHF---------TRSLFNNV-MPPLFAYNTLIRAYAK 76
+K LD N Y+ + I HF R +F+ + + ++N ++ A
Sbjct: 146 MKHGLDCNVYVQNTMI--------HFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACVD 197
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+S LF +M +G PD T ++ A + + G VHS + + G+ + +
Sbjct: 198 NEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRL 257
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
G L+ MYA C + A +F M E
Sbjct: 258 GTALVDMYAKCGAVCEASLVFHRMLE 283
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +LI YA+ S E I+LF EM + G+RPDN T V+ A + +G VH +
Sbjct: 369 SWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYV 428
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + D+ + N+L+ MYA C ++ A +F EMP
Sbjct: 429 KENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMP 464
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 61 MP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++NT+I Y+K E++ LF M++ L+PD T ++ A + G
Sbjct: 463 MPNKDIVSWNTMIGGYSKNGRPNETLHLFVAMVQE-LKPDGRTMACILPACASLAALDRG 521
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H I + G D ++ N L+ MYA C + A+ FD +P
Sbjct: 522 REIHGYIQRNGCFDDLHVANALIDMYAKCGALALARLFFDMIP 564
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + +F +N ++ YAK ES+ LF +ML G++ ++ T ++K
Sbjct: 154 RVIFDKIANEKVFLWNLMLSGYAKIGAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAAL 213
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VH + K+G S + N+L+ Y ++I+ A +FDE+
Sbjct: 214 GSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFKTRKIEAAYEVFDEL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++I + I++F EML G+ D +T V+ A +G +H+
Sbjct: 266 IVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLHA 325
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K L NTLL MY+ C +++ A +F +M E
Sbjct: 326 FAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGE 364
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+I+L D K+ + D+ TY +++ + + G VHS I G+ D +G L+
Sbjct: 85 AIELLDMYPKSNI--DSNTYCSILQLCAELNSLQEGKKVHSFISSSGIFVDGLLGTKLVF 142
Query: 143 MYAACKEIDFAKALFDEM 160
MY C +I + +FD++
Sbjct: 143 MYVNCGDIREGRVIFDKI 160
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 5/152 (3%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM-PPLFAYN 68
+Q +K H H L L +H +I+ + TS SLH R LF+ V P + YN
Sbjct: 1 MQEAKRLHAH--LITSGLHQQENHLRKLITLY--TSSSSSLHHARLLFDAVYHPSTYLYN 56
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
T+ R YA + + ++ L M + G PD T+PF++KA + G +H K
Sbjct: 57 TMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKF 116
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
GL ++ N+L+ +Y + +D A+ +FD M
Sbjct: 117 GLGGHVFVENSLIHLYGSNSRMDSARRVFDGM 148
Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ R +F+ MP + +Y+ ++ AY + + E+++LF E+ + P + V+
Sbjct: 168 SVEAARKVFDE-MPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVL 226
Query: 107 KASDQCLLIGVGGSVHSLI-FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + VG V+S + G + D I L+ M+ C I+ A +F+ E
Sbjct: 227 CACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKE 283
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
NT II+ + + P +R +F+ + LF +N ++ AY + +++ +F E++
Sbjct: 144 NTRIITMYSMCGSPSD---SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELIS 200
Query: 93 -TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
T +PDN T P V+KA L +G+G +H + K+ L SD ++GN L+ MY C ++
Sbjct: 201 VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 260
Query: 152 FA-KALFDEM 160
A K +FD M
Sbjct: 261 EAVKRVFDLM 270
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYI----ISRFILTSLPISLHFTRSLFNNVM-PPLFAYN 68
K+ H+ ++ L+ L + +I +S +I P + + LF+ + L ++N
Sbjct: 324 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA---AQVLFDGMEHRSLVSWN 380
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
+I Y++ E+I LF +ML G++P + V A Q + +G +H K
Sbjct: 381 VMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA 440
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L D ++ ++++ MYA I ++ +FD + E
Sbjct: 441 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N L+ YA+ S +++ L+ +M +GL PD T ++ A + + G +H
Sbjct: 277 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 336
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL D +IG +LL +Y C + A+ LFD M
Sbjct: 337 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGM 371
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA-YNTLIRAYAKTS 78
+L LK L + ++ S I + + + ++ +F+ + A +N +I Y
Sbjct: 432 ELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHG 491
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS-----D 133
E+++LF++ML+ GL+PD+ T+ ++ A L+ G + + LH+ +
Sbjct: 492 RGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN--LHNIEPKLE 549
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMP 161
Y ++ M ID A L +EMP
Sbjct: 550 HY--TCVVDMLGRAGRIDDALRLIEEMP 575
>gi|296085509|emb|CBI29241.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIIS---RFILTSLPISLHFTRSLFNNV-MPPLFAYNT 69
KT QL A +KT+ + + RF S L + R +F ++ P F+YNT
Sbjct: 22 KTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNT 81
Query: 70 LIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
LIRA ++++ +++ +F EM++ + P+ T+P V KA + + G VH L K
Sbjct: 82 LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALF 157
GL SD+++ + ++RMY +C ++ A LF
Sbjct: 142 GLDSDEFVVSNVVRMYLSCGVMEDAHRLF 170
>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1002
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 48 ISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+++HF R++ N LF+Y ++ A+ E++ + EM++ G PDN P +K
Sbjct: 158 VAVHFFRNVVKN--QNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLK 215
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDK--YIGNTLLRMYAACKEIDFAKALFDEMP 161
A IG G +H + K+G D Y+ +L+ MY C ++ A+ +FDEMP
Sbjct: 216 ACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMP 271
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F+ + V P L + T+I A+ E+ ++F +M G+RP++++ + A
Sbjct: 541 FSEMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTN 600
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
L+ G S+H + + + I +++ MYA C +D AK +F
Sbjct: 601 MALLNYGRSIHGYVMRNFMSFSLQITTSIIDMYAKCGNLDDAKFVF 646
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
YN +I AYA S E++ LF E++K G+ PD++T+ V+ A H +
Sbjct: 657 YNAMISAYASHGKSAEALALFQELVKQGIMPDHITFTSVLSACS-----------HGRLL 705
Query: 127 KVGLHSDKYI 136
K GL KY+
Sbjct: 706 KEGLELFKYM 715
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 7 ETLIQLSKTAHHHHQLPAL---FLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP 62
+TLI L + ++ Q+P++ ++T D + +++ I + S S+ + +F V
Sbjct: 30 KTLISLLRNCKNNAQVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSIDYAYDVFRYVSN 89
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS--DQCLLIGVGG 119
P ++ Y +I + + S + + L+ M+ + + PDN V+KA D+C
Sbjct: 90 PNVYLYTAMIDGFVSSGRSADGVSLYHRMIHSSVLPDNYVITSVLKACGLDECR------ 143
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+HS + K+G S + +G L+ +Y E+ AK +FDEMP+
Sbjct: 144 EIHSQVLKLGFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPD 186
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +YNT+I A S+E+I +F +M+ G RP+ +T ++ A L+ +G V +
Sbjct: 311 VISYNTMISGLAMHGASVEAINVFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFN 370
Query: 124 LIFKV 128
+++V
Sbjct: 371 SMWRV 375
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G VHS + + ++GN L+ MY+ C +I+ AK +F M
Sbjct: 264 GAGVHSFVENQKMELSNFVGNALINMYSRCGDINVAKRVFKGM 306
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 87/157 (55%), Gaps = 7/157 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPP 63
+L++ T + +Q+ + +KT L N +++ I+ T +++ R +F+ + P
Sbjct: 40 SLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPS 99
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV-- 121
+F +NT+I+ Y++ +CS + L+ ML ++PD T+PF++K + + + G +
Sbjct: 100 VFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLN 159
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
H++I L S+ ++ + +++ C +++A+ +FD
Sbjct: 160 HAVIHGF-LDSNLFVQKGFIHLFSLCGLVNYARKIFD 195
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I Y + + E + LF +M + ++PD T ++ A + +G + I
Sbjct: 339 SWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYI 398
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + +D +IGN L+ MY C ++ AK +F+EM +
Sbjct: 399 DKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQK 435
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 31 LDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFD 88
LD N ++ FI L SL +++ R +F+ + +N ++ Y + ES +LF
Sbjct: 167 LDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFI 226
Query: 89 EMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI-GNTLLRMYA 145
EM K + P+++T ++ A + + G +++ K G+ I N L+ M+A
Sbjct: 227 EMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFA 286
Query: 146 ACKEIDFAKALFDEM 160
+C E+D A+ +FDEM
Sbjct: 287 SCGEMDAARGVFDEM 301
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-----SLPISLHFTRSLFNNVMPP--LFAYNTLIRA 73
QL A +K+ L + +++R + + P L + R +F+ + P + YNTL+R
Sbjct: 37 QLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIPTPGDVVWYNTLLRG 96
Query: 74 YAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
YA++S + E+ ++ ML+ G+ PD T+ ++KA G H + K G
Sbjct: 97 YARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAAD 156
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+Y+ TL+ MYA C + A+A+F +P
Sbjct: 157 HEYVLPTLINMYAECGDARSARAMFGRVP 185
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
+YN +I A ++S E++ LF EM GL+P ++T V+ A C L+G +G +H
Sbjct: 192 SYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSA---CALLGALELGRWIH 248
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K GL S + L+ MY C ++ A +F M
Sbjct: 249 EYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGM 286
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A++ +I AYA S E+I LF+EM K G+RPD +T+ V+ A ++ G +
Sbjct: 293 AWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSM 352
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G+ + + A +++ A DE+P
Sbjct: 353 REYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELP 388
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ LF+ + + + ++N +I YA+T E+++LF +M+KT +RPD T VV A Q
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I +G VH I G S+ I N L+ +Y+ C E++ A LF+ +P
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMP 62
+L+ KT + A +K L + Y +S+ I + +S HF S+F +
Sbjct: 38 SLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI-LSPHFEGLPYAISVFKTIQE 96
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L +NT+ R +A +S + ++KL+ M+ GL P++ T+PFV+K+ + G +
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H + K+G D Y+ +L+ MY ++ A +FD+ P
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSP 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ A +F+ +
Sbjct: 392 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISL--HFTRSLFNNVMPPLFAYNTLIRAYAKTS 78
Q+ AL LK+ + Y+ + I T TR + L A+ ++I AY++
Sbjct: 462 QIHALSLKSGFQFDNYVANSLIDTYGKCGRIKDATRIFQESPFVDLVAFTSMITAYSQDG 521
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++KL+ EM +RPD+ ++ A G VH + K G SD + GN
Sbjct: 522 QGEEALKLYLEMQDRKIRPDSFVCSSLLNACANLSAYEQGKQVHVHVLKFGFISDIFAGN 581
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ MYA C ID A F E+PE
Sbjct: 582 SLVNMYAKCGSIDDADRAFSEIPE 605
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
QL + LK + ++++ I L L N+MP L +N I +++
Sbjct: 361 QLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAITGHSQNG 420
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+E++ LF M K G+ + +T V+K+ + + +H+L K G D Y+ N
Sbjct: 421 EDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHICSQIHALSLKSGFQFDNYVAN 480
Query: 139 TLLRMYAACKEIDFAKALFDEMP 161
+L+ Y C I A +F E P
Sbjct: 481 SLIDTYGKCGRIKDATRIFQESP 503
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++N +I A +++LF +M ++G+ P+ T +KA L +G +
Sbjct: 303 PDIVSWNAIIAGCALREYHCWALELFGKMNRSGMCPNMFTISSALKACAGMGLKELGRQL 362
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HS + K+ + SD ++ L+ MY+ C + A+ LF+ MPE
Sbjct: 363 HSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPE 403
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ + K+GL D I N L+ +Y+ C+ +A+ + DE E
Sbjct: 125 GKEIHARVIKLGLSQDPKIRNLLINLYSKCQFFKYARKMVDESTE 169
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL + R +FN + P F N++IR Y + ++I + M+ GL PD T+P + K
Sbjct: 27 SLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFK 86
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ C ++ G +H K+G SD YI NTL+ MY+ C + A+ +FD+M
Sbjct: 87 S---CGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 136
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF +N +I + + S E++ LF+EM +G++ D +T ++ A + +G +H
Sbjct: 173 LFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHV 232
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K + D +G L+ MYA C I+ A +F EMPE
Sbjct: 233 YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 271
>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
Length = 1490
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L+ ++ +I AY++ + E KLF M++ G+ PD+ +P +++ C + G +HS
Sbjct: 146 LYTWSAMIGAYSRENRWREVSKLFRLMMEEGVLPDDFLFPKILQGCANCGDVETGKLIHS 205
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ K+G+ S + N++L +YA C E DFA F M E
Sbjct: 206 VVIKLGMSSCLRVSNSILAVYAKCGEWDFATKFFRRMKE 244
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%)
Query: 59 NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ +F + +I +++ +F +M G+ P+ +T V A +I +G
Sbjct: 312 GITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSYLKVINLG 371
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VHS+ K+G D +GN+L+ MY+ C +++ A+ +FD +
Sbjct: 372 SEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSV 413
>gi|255564460|ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537522|gb|EEF39147.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 488
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVMPPL 64
+L+ S H L A L+TSL N + S+ +L ++ H + F+ +
Sbjct: 42 SLLHSSPDLTHLRHLHARLLRTSLYDNVVLSSKLVLMYSHHNRLTPHSLSTFFHMPCKNI 101
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+++N +I +A+++ +S+ LF +M + + +PD+ + P V++A L +G SVH
Sbjct: 102 YSWNIIIGEFARSNLPEKSVDLFIDMRRDSHFQPDDFSLPLVLRACAGSGLGKLGSSVHG 161
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L K+GL ++G+ L+ MY + A+ +FDEM
Sbjct: 162 LCVKMGLAVSLFVGSALVFMYVTFGNVSNARVVFDEM 198
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHS 123
+ L+ YA+ +++F EM+ R L + +V C +G G SVH
Sbjct: 206 WTALLSGYAQNGEPKLGLQVFREMVDNSTRV-KLDWVVMVSLLLVCGQLGSLKHGKSVHG 264
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L + +GN ++ MY C + +A FD+MPE
Sbjct: 265 WCVRNCLRLELSLGNAIVHMYIKCGMLAYAHRFFDKMPE 303
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
+L A +K S++ N I S + + + MP ++ LI Y
Sbjct: 370 ELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLG 429
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++E++K D+ML G++P+ TY +KA + + G +H + K S+ ++G+
Sbjct: 430 HNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGS 489
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ MY C ++D A+++FD MPE
Sbjct: 490 SLIDMYMRCGKVDEARSVFDAMPE 513
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I AY + +++++F EM+ G RP+ T V+KA + + G +H
Sbjct: 213 VISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHC 272
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K +D +IG+ L+ MYA C E+ A+A+FD MP
Sbjct: 273 AVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMP 310
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + ++ ++ Y K E ++LF +M+ +G++ ++LT+ ++K+ +
Sbjct: 102 REVFDE-MPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGE 160
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G VH I K G S+ + + + YA C ++ A A+FD+M
Sbjct: 161 RCDAKLGQQVHCCIVKGGW-SNVIVDSAIAHFYAQCGDVASASAIFDKM 208
Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTS 78
QL LK ++ +I S + F ++MP + ++I YA++
Sbjct: 269 QLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSG 328
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++I LF +M + +NLT ++ A +G +H+ I K + + IG+
Sbjct: 329 HGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGS 388
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
TL+ Y C E +A + + MP+
Sbjct: 389 TLVWFYCKCGEYTYAARILEAMPD 412
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
+L A +K S++ N I S + + + MP ++ LI Y
Sbjct: 403 ELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLG 462
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++E++K D+ML G++P+ TY +KA + + G +H + K S+ ++G+
Sbjct: 463 HNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGS 522
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ MY C ++D A+++FD MPE
Sbjct: 523 SLIDMYMRCGKVDEARSVFDAMPE 546
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I AY + +++++F EM+ G RP+ T V+KA + + G +H
Sbjct: 246 VISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHC 305
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K +D +IG+ L+ MYA C E+ A+A+FD MP
Sbjct: 306 AVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMP 343
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + ++ ++ Y K E ++LF +M+ +G++ ++LT+ ++K+ +
Sbjct: 135 REVFDE-MPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGE 193
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G VH I K G S+ + + + YA C ++ A A+FD+M
Sbjct: 194 RCDAKLGQQVHCCIVKGGW-SNVIVDSAIAHFYAQCGDVASASAIFDKM 241
Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTS 78
QL LK ++ +I S + F ++MP + ++I YA++
Sbjct: 302 QLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSG 361
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++I LF +M + +NLT ++ A +G +H+ I K + + IG+
Sbjct: 362 HGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGS 421
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
TL+ Y C E +A + + MP+
Sbjct: 422 TLVWFYCKCGEYTYAARILEAMPD 445
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL--TSLP-ISLHFTRSLFNNVMP 62
+ET +Q + +Q+ + + + +++ SR + T LP I+++ + +F+++
Sbjct: 29 LETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIEN 88
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F NT+++ Y + + ++I ++ ML++ + DN TYP + ++ L G +
Sbjct: 89 PNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCI 148
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ KVG SD YI NTL+ MYA C + A+ +FD
Sbjct: 149 QDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFD 185
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LFN + L +++ LI Y + E++ LF EM G+ D + V+ A + L+
Sbjct: 245 LFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLV 304
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ G VH L+ KVG+ + + N L+ MY++C+E+ A+ LF E
Sbjct: 305 VITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSE 349
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R+LF++ MP +++ +I YA+ E++ LF EM G +PD V+ A
Sbjct: 374 ARALFDS-MPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACT 432
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H+ I K GL + +G TL+ MY ++ A +F + E
Sbjct: 433 HLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEE 484
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYA------KTSCSIESIKLFDEMLKTGLRPDNLT 101
S ++ ++F+ + P L YN +IR+Y ++C +++ L+ +ML G+ P+NLT
Sbjct: 71 SFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNLT 130
Query: 102 YPFVVKASDQCLLIG-VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+PF+VK + G VG +H+ + K G +D ++GN+L+ ++ A+ +FDEM
Sbjct: 131 FPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEM 190
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLI 71
LSK A +F++ + N+ ++ + ++L+ R + + +N++I
Sbjct: 179 LSKNARK--VFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGR---NIITWNSII 233
Query: 72 RAYAKTSCSIESIKLFDEM-LKTG---LRPDNLTYPFVVKASDQCLLIGV---GGSVHSL 124
+ + ES+++F EM +G ++PD +T V+ A C L+G G VH+
Sbjct: 234 TGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSA---CALLGSIDHGKWVHAY 290
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K + D IG L+ MY C ++ A +F++MPE
Sbjct: 291 LRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPE 328
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R LFN V + ++ +I AK+ E++ +F +M + GL+P+ +TY ++
Sbjct: 496 SIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILN 555
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + G +H + + GL +D ++ NTL+ MY+ C + A+ +FD M +
Sbjct: 556 ACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQ 610
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ AYN +I YA + E++KLFD + + GL+PD +TY ++ A + +HS
Sbjct: 613 IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHS 672
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L+ K G SD +GN L+ YA C A +FD+M
Sbjct: 673 LVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM 709
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+NT+I A+ E+ +++ +M + G+ P+ +TY ++ A + G +HS
Sbjct: 411 LIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHS 470
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K G D + N L+ MYA C I A+ LF++M
Sbjct: 471 RVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKM 507
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+H R +F+ + + ++ +I YA S + ++F +M + G+ P+ +TY V+
Sbjct: 294 SIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLN 353
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G +VHS I G SD +G L++MYA C + +F+++
Sbjct: 354 AFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKL 406
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 47/104 (45%)
Query: 57 FNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N+ + ++N ++ Y + E++KL EM + GL T ++ + +
Sbjct: 202 LNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALE 261
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +H K L D + N +L MYA C I A+ +FD+M
Sbjct: 262 CGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305
>gi|302808820|ref|XP_002986104.1| hypothetical protein SELMODRAFT_22638 [Selaginella moellendorffii]
gi|300146252|gb|EFJ12923.1| hypothetical protein SELMODRAFT_22638 [Selaginella moellendorffii]
Length = 376
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F++ MP +N +I AY + E+I+LF EM G+ D++T+ V+
Sbjct: 113 RRMFDD-MPIRSAVTWNAMIAAYGQNGVGGEAIRLFQEMDVEGIPADDITFVSVIDVCGS 171
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ VG VH + GL ++ +GN L+ MY C +D A+ LFDEM
Sbjct: 172 VADLRVGELVHEEVVARGLETEMALGNALVTMYGRCGVLDTARLLFDEM 220
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 6 IETLIQLS---KTAHHHHQLPALFLKT-SLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
I+TLI+ K+ QL A F++T SL H + I I T+L +
Sbjct: 8 IKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKS 67
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
PP+ A+ ++IR + S +++ F EM +G PD+ +P V+K+ + + G SV
Sbjct: 68 PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAA----CKEIDFAKALFDEMPE 162
H I ++G+ D Y GN L+ MYA +I +FDEMP+
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN-VFDEMPQ 171
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 46 LPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYP 103
+P + R +F VMP + +YNT+I YA++ +++++ EM T L+PD+ T
Sbjct: 188 MPFGIDSVRRVFE-VMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+ + + + G +H + + G+ SD YIG++L+ MYA I+ ++ +F +
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRL 303
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ ++ +D + YI S + + + + + +F+ + ++N+L+ Y +
Sbjct: 263 EIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNG 322
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E+++LF +M+ ++P + + V+ A + +G +H + + G S+ +I +
Sbjct: 323 RYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIAS 382
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY+ C I A+ +FD M
Sbjct: 383 ALVDMYSKCGNIKAARKIFDRM 404
>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N+LI YA+ E+I L+ +M++ G+ D T+P V+K + VG VH
Sbjct: 159 FPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRH 218
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +D +I N L+ MY+ C +I A+ +FD+MP
Sbjct: 219 AIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMP 255
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+++ AY ++++ +F +ML G PD+++ V+ +G+G +H +
Sbjct: 261 SWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSS---LGLGVQIHGWV 317
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G + I N+L+ MY+ ++ A+ +F+ MPE
Sbjct: 318 ISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPE 354
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
+ +K + ++ G++ D Y +++ + I G VH LI LH + I + LL
Sbjct: 73 QVVKDLEASVEKGIKIDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLL 132
Query: 142 RMYAACKEIDFAKALFDEMPE 162
R+YA+C +D A LFD+M +
Sbjct: 133 RLYASCGYLDDAHDLFDQMAK 153
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 41 FILTSLPISLHF-------TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEML 91
F+ +SL I L+F ++F N MP + ++N +I Y K +E++ +F +M
Sbjct: 536 FVNSSL-IDLYFKCGNIGSAENVFQN-MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 593
Query: 92 KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
K G++PD +T+ V+ A Q ++ G +H+ I + L ++ + LL MYA C +D
Sbjct: 594 KAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVD 653
Query: 152 FAKALFDEMPE 162
A +F+++PE
Sbjct: 654 EALHIFNQLPE 664
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 43 LTSLPISLHFTRS---LFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLR 96
L +L S H +S +F + PL +N L+ A K IE +++F +L L+
Sbjct: 236 LINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLK 295
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156
PD TYP V+KA +G G VH+ + K G D + ++ + MYA C + A L
Sbjct: 296 PDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKL 355
Query: 157 FDEMPE 162
FDEMPE
Sbjct: 356 FDEMPE 361
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + ++++LF+EM +G +PD++T V+ + + L + G +H +
Sbjct: 366 SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMEL 425
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G D ++ + L+ MY C ++ AK +F+++
Sbjct: 426 VRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 460
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L + +F + + ++N++I Y+ S I+LF M + G+RP T ++ A
Sbjct: 450 LEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMA 509
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +G +H I + + +D ++ ++L+ +Y C I A+ +F MP+
Sbjct: 510 CSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPK 563
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
ML+ G+ PD+LTYPF+ KA+ + L +G S+H + K G D+++ N+L+ MY +C +
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 150 IDFAKALFDEMP 161
I +A+ +FD P
Sbjct: 61 IVYARKVFDGTP 72
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF+ +MP + +++ LI YAK+ +++ +F++M +G + + +T V+
Sbjct: 92 LDLARGLFD-LMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSVLC 150
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
A + G +H + G + + +L+ MYA C ++ A A+F
Sbjct: 151 ACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVF 200
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 38 ISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
+SR + T +LFN + +F++N++I A++ S E+++ F M K L
Sbjct: 13 VSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSL 72
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
P ++P +KA L I G H F G SD ++ + L+ MY+ C +++ A+
Sbjct: 73 YPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK 132
Query: 156 LFDEMPE 162
+FDE+P+
Sbjct: 133 VFDEIPK 139
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQ 111
R +F+ ++ +YN+++ YA++ S E+ +F ++K + N +T V+ A
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSH 299
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H + ++GL D +G +++ MY C ++ A+ FD M
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRM 348
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML------KTGLRPDNLTYPFVVKASDQCLLIGV 117
+ ++ ++IR Y +++++ LF ++L + D++ V+ A + G+
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGL 201
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE--IDFAKALFDEM 160
S+HS + K G +GNTLL YA E + A+ +FD++
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI 246
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N LIRA++++ I +I +++ +K + PD TYP ++KA + + G VH+ +
Sbjct: 41 WNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAHV 100
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K GL SD Y+GN LL +Y + ++ A+ LFD MP
Sbjct: 101 TKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMP 136
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 28 KTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESI 84
KT LD + Y+ + + L + R LF+ MP L ++NTL+ AY + +E +
Sbjct: 102 KTGLDSDVYVGNALLHLYGSTGQVTDARRLFDG-MPHRDLASWNTLLGAYNDNA--VEVL 158
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
LF M+ G+ D+++ V A + G VH + KVG+ + N LL +Y
Sbjct: 159 VLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVY 218
Query: 145 AACKEIDFAKALFDEM 160
C E+D A++LF EM
Sbjct: 219 TKCGEMDAAQSLFVEM 234
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ + + L ++N++I AY K ++I+LF +M + PD T V+
Sbjct: 255 SIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLA 314
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G H I + D ++G L+ MYA C ++ A F +M
Sbjct: 315 ACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKM 367
>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +Y LI ++K+ E+++LF ML +G+ P+ T+ ++ A + + +G V
Sbjct: 159 PNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H ++ K+GL S +I N L+ +Y C +D LF+EMPE
Sbjct: 219 HGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPE 259
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N MP +YN ++ ++ +++LF EML+ G+ + T ++ A
Sbjct: 388 NKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFK 447
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
V + + K G+ S+ I L+ MY C ++ A+ +F
Sbjct: 448 VSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIF 488
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++NT+I + K E+ F M L GL+ D+ + ++ A + G +H+L
Sbjct: 264 SWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHAL 323
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
KVGL S + ++L+ Y C + LF+ MP
Sbjct: 324 ALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMP 360
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLH---FTRSLFNNV-MPPLFAYNTLIRAYA 75
+L ++ L + + R + L + P+S H + R +F+ + P +N +IR Y
Sbjct: 36 ELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYN 95
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI---GVGGSVHSLIFKVGLHS 132
+++++LF M ++G+ PDN T V ++S G +VH+L+ ++G S
Sbjct: 96 SCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFAS 155
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D ++ + L+ Y A K ++ A+ +F+EM E
Sbjct: 156 DLFVMSGLINFYGASKSVEDARKVFEEMHE 185
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NTLI + + E++ +F+EML G+ PD +T V+ Q + G +H+ I
Sbjct: 291 SWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYI 350
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H D + N+L+ MYA C ++ A+ +F+ M
Sbjct: 351 KDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENM 385
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I A+A+ ++ DEM G +P+ +T ++ A Q + G V++ +
Sbjct: 190 SWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARV 249
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G+ +D I N L+ MY C + A F MP
Sbjct: 250 DEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMP 285
Score = 39.3 bits (90), Expect = 0.61, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++ Y K + LFD+M + + ++ A Q + G +HS
Sbjct: 390 IVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHS 449
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + + +D ++ + L+ MYA C ID A +F M
Sbjct: 450 YIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRM 486
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 57/97 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I ++ S + + F +ML+ G+ PDN TY V+ I +G +H+ I
Sbjct: 509 SWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQI 568
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+ LHSD YI +TL+ MY+ C + ++ +F++ P+
Sbjct: 569 LKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPK 605
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
++ F +SLF+ MP + ++N+L+ Y + +SI++F M + D T+ V+
Sbjct: 87 NMGFAQSLFD-TMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVL 145
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KA G+G VH L ++G +D G+ L+ MY+ CK++D A +F EMPE
Sbjct: 146 KACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPE 201
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A+ + ++++ LF ML++ + PD+ TY VVKA + G +H I
Sbjct: 408 SWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRI 467
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G+ D ++G+ L+ MY C + A+ + D + E
Sbjct: 468 VKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEE 504
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L ++ +I Y + IE +KLF +MLK G+ TY V ++ +G
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H K D IG L MYA C + A +F+ +P
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLP 301
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VG 118
PP +YN +I YA+ ++++++F + +T L D ++ + A C +I G
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTA---CSVIKGHLEG 359
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H L K GL + + NT+L MY C + A +FD+M
Sbjct: 360 IQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDM 401
>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
gi|219885099|gb|ACL52924.1| unknown [Zea mays]
Length = 530
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + ++ LI YA+ E+I L +ML+ RP+ T+ ++KA+
Sbjct: 12 RHVFDK-MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA 70
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
C +G +H+L K D Y+G+ LL MYA C+++D A +FD +
Sbjct: 71 CGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ AL +K + D + Y+ S + + + + +F+ ++ ++N LI +A+ +
Sbjct: 79 QMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKA 138
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F EM + G + TY + A + + G VH+ + K G ++GN
Sbjct: 139 DGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGN 198
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
T+L MYA + A+ +FD M
Sbjct: 199 TMLGMYAKSGSMVDARKVFDRM 220
>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +Y LI ++K+ E+++LF ML +G+ P+ T+ ++ A + + +G V
Sbjct: 159 PNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H ++ K+GL S +I N L+ +Y C +D LF+EMPE
Sbjct: 219 HGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPE 259
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N MP +YN ++ ++ +++LF EML+ G+ + T ++ A
Sbjct: 388 NKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFK 447
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
V + + K G+ S+ I L+ MY C ++ A+ +F
Sbjct: 448 VSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIF 488
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++NT+I + K E+ F M L GL+ D+ + ++ A + G +H+L
Sbjct: 264 SWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHAL 323
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
KVGL S + ++L+ Y C + LF+ MP
Sbjct: 324 ALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMP 360
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
H H P+L +K ++ + + P S TR +F+ + + +N +IR+Y
Sbjct: 65 HDLHSNPSLGIK--------LMRAYAVCGEPWS---TRHIFDEIPKKNVVFFNVMIRSYV 113
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+++ +F M G+ PD+ TYP V+KAS + VG +H+ + +VGL + +
Sbjct: 114 NNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVF 173
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+GN L+ MY C + A + D+MP
Sbjct: 174 VGNGLISMYGKCGCLVEACRVLDQMP 199
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
++ F + +F + L ++N +I Y S E++ +F +M + PD ++ V+
Sbjct: 255 NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLP 314
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G +H + + L + + N L+ MYA C +++A+ +FD+M
Sbjct: 315 ACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQM 367
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N +I YA T + E++ LF EM+KT ++PD T VV A Q
Sbjct: 188 AQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQ 247
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I +G VHS I GL S+ I N L+ +Y+ C E++ A LF
Sbjct: 248 SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLF 293
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRF----ILTSLPISLHFTRSLFNNVMPP 63
+L+ KT + A +KT L + Y +SR IL+ L + S+F + P
Sbjct: 7 SLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEP 66
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
L +NT+ R +A +S + +IKL+ M+ GL P++ T+PF++K+ + + G +H
Sbjct: 67 NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIH 126
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ K+G D Y+ +L+ MY A +FD
Sbjct: 127 GHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFD 162
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NT+I Y + E++ LF EML++G P+++T ++ A Q I G +H
Sbjct: 301 VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ A +F+ M
Sbjct: 361 YIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399
>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
Length = 481
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N+LI YA+ E+I L+ +M++ G+ D T+P V+K + VG VH
Sbjct: 159 FPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRH 218
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +D +I N L+ MY+ C +I A+ +FD+MP
Sbjct: 219 AIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMP 255
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+++ AY ++++ +F +ML G PD+++ V+ +G+G +H +
Sbjct: 261 SWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSS---LGLGVQIHGWV 317
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G + I N+L+ MY+ ++ A+ +F+ MPE
Sbjct: 318 ISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPE 354
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
+ +K + ++ G++ D Y +++ + I G VH LI LH + I + LL
Sbjct: 73 QVVKDLEASVEKGIKIDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLL 132
Query: 142 RMYAACKEIDFAKALFDEMPE 162
R+YA+C +D A LFD+M +
Sbjct: 133 RLYASCGYLDDAHDLFDQMAK 153
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL----TSLPISLHFTRSLF 57
IS I+ L KT++ +++ +KT + N+ + +R +L + P F R +F
Sbjct: 5 ISSTIQVLGS-CKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVF 63
Query: 58 NNV---------MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ M F +N +I++++ +++ LF ML+ G+ D + V+KA
Sbjct: 64 HEYHVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKA 123
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G +H + K GL SD ++ N L+ +Y C + FA+ +FD MP+
Sbjct: 124 CSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQ 177
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 41 FILTSLPISLHF-------TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEML 91
F+ +SL I L+F ++F N MP + ++N +I Y K +E++ +F +M
Sbjct: 344 FVNSSL-IDLYFKCGNIGSAENVFQN-MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 401
Query: 92 KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
K G++PD +T+ V+ A Q ++ G +H+ I + L ++ + LL MYA C +D
Sbjct: 402 KAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVD 461
Query: 152 FAKALFDEMPE 162
A +F+++PE
Sbjct: 462 EALHIFNQLPE 472
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 43 LTSLPISLHFTRS---LFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLR 96
L +L S H +S +F + PL +N L+ A K IE +++F +L L+
Sbjct: 44 LINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLK 103
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156
PD TYP V+KA +G G VH+ + K G D + ++ + MYA C + A L
Sbjct: 104 PDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKL 163
Query: 157 FDEMPE 162
FDEMPE
Sbjct: 164 FDEMPE 169
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + ++++LF+EM +G +PD++T V+ + + L + G +H +
Sbjct: 174 SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMEL 233
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G D ++ + L+ MY C ++ AK +F+++
Sbjct: 234 VRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 268
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L + +F + + ++N++I Y+ S I+LF M + G+RP T ++ A
Sbjct: 258 LEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMA 317
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +G +H I + + +D ++ ++L+ +Y C I A+ +F MP+
Sbjct: 318 CSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPK 371
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA-K 76
+Q+ A LK +L + ++ + I SL L ++FN+V P + YN++IRA+A
Sbjct: 38 NQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHN 97
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
TS F +M K GL PDN TYPF++KA + + +H+ + K G + D ++
Sbjct: 98 TSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFV 157
Query: 137 GNTLLRMYAACKE--IDFAKALFDEMPE 162
N+L+ Y+ C +D A +LF M E
Sbjct: 158 PNSLIDSYSRCGSAGLDGAMSLFLAMKE 185
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 48/94 (51%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ T+I YA+ E+ +L+ +M + GLRPD+ ++ A + ++G+G +H+ +
Sbjct: 284 WTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMR 343
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + N + MYA C +D A +F M
Sbjct: 344 RWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGM 377
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N +I+ + IE+++ + M+ G++ D TYPFV+K+ + G +H++
Sbjct: 96 FLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAM 155
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G SD Y+ N+L+ +Y A+ +F+EMPE
Sbjct: 156 VIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F R NV+ ++N++I AY + + +++LF E+ + L PD+ T ++ A +
Sbjct: 388 FDRMAEKNVI----SWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAE 443
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L + G +H+ I K S+ I N+L+ MYA C +++ A+ F+ +
Sbjct: 444 SLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHI 492
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
++ A+ +K + Y+ + I + + + MP + ++N++I Y
Sbjct: 151 KIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALG 210
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS-DKYIG 137
S+ LF EMLK G +PD + + A +G +H + + + D +
Sbjct: 211 DGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVM 270
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
++L MY+ E+ +A+ +F+ M
Sbjct: 271 TSILDMYSKYGEVSYAERIFNGM 293
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 52 FTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKAS 109
+ +FN ++ + A+N +I YA+ ++ F +M + GL+PD +T ++ AS
Sbjct: 285 YAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPAS 344
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G ++H + G + L+ MY C ++ A+ +FD M E
Sbjct: 345 ----AILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAE 393
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAY---AKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVV 106
+ R+LF+ + P F YN+LIRA A + + +++ ++ ML+ G P++ T F +
Sbjct: 76 YARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 135
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KA +G G +HS F+ GL Y+ LL +YA C+E+ A+ +FD M
Sbjct: 136 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGM 189
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 52 FTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
R++F+ ++ L A++ +I Y++ E++ LF EM + PD +T V+ A
Sbjct: 181 LARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISAC 240
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + +G VH+ I + G+ D + L+ MYA C I+ AK +FD M E
Sbjct: 241 AKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAE 293
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNT----YIISRFILTSLPISLHFTRSLFNNVMPP 63
+LI S H Q+ AL L+TSL N+ + +SR L+ +P ++++ +F+ + P
Sbjct: 16 SLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNP 75
Query: 64 LFAY-NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIG--VGG 119
++ NT+IRA++ + E +LF + + P N L+ F +K C+ G +GG
Sbjct: 76 TLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKC---CIKSGDLLGG 132
Query: 120 -SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H IF G SD + TL+ +Y+ C+ A +FDE+P+
Sbjct: 133 LQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPK 176
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM---LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++N L Y + + + + LFD+M + ++PD +T ++A + G VH
Sbjct: 181 SWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVH 240
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + GL + NTL+ MY+ C +D A +F M E
Sbjct: 241 DFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRE 280
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 54 RSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F + ++++N++I +A++ S++++ F M K L P+ T+P +K+
Sbjct: 39 RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H F G SD ++ + L+ MY+ C ++ A+ LFDE+PE
Sbjct: 99 LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPE 149
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N+LI YA+ S+E+ LF +M+K G +R + +T V+ A + +G +H
Sbjct: 266 SWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQ 325
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+ L + +G +++ MY C ++ A+ FD +
Sbjct: 326 VVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRL 361
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLF-----------DEMLKTGLRP 97
L+ R LF+ + + ++ ++I Y + + E++ LF DE++ G+
Sbjct: 137 LNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGV 196
Query: 98 DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
D++ V+ A + + V VH L K G +GNTL+ YA C EI ++ +F
Sbjct: 197 DSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVF 256
Query: 158 DEMPE 162
D M E
Sbjct: 257 DGMEE 261
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS----LHFTRSL--FNNVMPP- 63
Q + + HH Q AL L+T ++YI + + +S L F SL F+ V P
Sbjct: 43 QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 102
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +I+ + + ++I L+ EM+ RP+ TYP V+KA ++ G VH+
Sbjct: 103 VFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHA 162
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ K GL D +I ++ +RMYA+ + A+ + D+
Sbjct: 163 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 198
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ +I Y + C +E++++F +M K +RP P V+ A + G +H+
Sbjct: 270 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 329
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + D +G +L+ MYA C ID A +F++M
Sbjct: 330 KRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKM 364
>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
Length = 844
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDE-MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++A+N +I Y + S E I+ F ML +GL PD T+P V+KA C + G +H
Sbjct: 50 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKA---CRTVIDGNKIH 106
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L K G D Y+ +L+ +Y+ K + A+ LFDEMP
Sbjct: 107 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMP 145
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
R++FN +P + ++NT+I YA+ + E+I++++ M + G + + T+ V+ A
Sbjct: 321 ARAVFN-WLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPAC 379
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
Q + G +H + K GL+ D ++ +L MY C ++ A +LF ++P
Sbjct: 380 SQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 431
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I+AY + +I LF EM + ++PD LT + Q I SV
Sbjct: 231 LISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQG 290
Query: 124 LIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G D IGN ++ MYA +D A+A+F+ +P
Sbjct: 291 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 329
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS----LHFTRSL--FNNVMPP- 63
Q + + HH Q AL L+T ++YI + + +S L F SL F+ V P
Sbjct: 63 QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 122
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +I+ + + ++I L+ EM+ RP+ TYP V+KA ++ G VH+
Sbjct: 123 VFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHA 182
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ K GL D +I ++ +RMYA+ + A+ + D+
Sbjct: 183 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD 218
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ C +E++++F +M K +RP P V+ A + G +H+ + + D
Sbjct: 231 RKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV 290
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+G +L+ MYA C ID A +F++M
Sbjct: 291 LGTSLVDMYAKCGRIDLAWEVFEKM 315
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++N L+ Y + ES+ LF EM + G+ PD T+ ++K+ + +G V
Sbjct: 154 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 213
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+L K GL D G+ L+ MY C+ +D A F MPE
Sbjct: 214 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 254
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A + ++I F+EML+ G++PD+ TY V+KA + G VH +
Sbjct: 461 SWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKV 520
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL SD ++ +T++ MY C ID A+ L D +
Sbjct: 521 IKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 555
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ ++ S E+ K F EML GL+PD+ T+ V+ I +G +H I
Sbjct: 562 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 621
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + D+YI +TL+ MYA C ++ + +F+++
Sbjct: 622 IKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 656
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N ++ + IE++ LF M+++ +R D ++ V A + G VH L K
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 421
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D + N +L +Y CK + A +F M +
Sbjct: 422 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQ 456
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
LHF L + P F Y ++++A A + + D+++K+GL D VV
Sbjct: 480 LHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 539
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+C +I +H I + S N +L ++ KE + A+ F EM
Sbjct: 540 CKCGIIDEAQKLHDRIGGQQVVS----WNAILSGFSLNKESEEAQKFFSEM 586
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++N L+ Y + ES+ LF EM + G+ PD T+ ++K+ + +G V
Sbjct: 112 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 171
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+L K GL D G+ L+ MY C+ +D A F MPE
Sbjct: 172 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A + ++I F+EML+ G++PD+ TY V+KA + G VH +
Sbjct: 419 SWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKV 478
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL SD ++ +T++ MY C ID A+ L D +
Sbjct: 479 IKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ ++ S E+ K F EML GL+PD+ T+ V+ I +G +H I
Sbjct: 520 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + D+YI +TL+ MYA C ++ + +F+++
Sbjct: 580 IKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 614
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N ++ + IE++ LF M+++ +R D ++ V A + G VH L K
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D + N +L +Y CK + A +F M +
Sbjct: 380 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQ 414
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
LHF L + P F Y ++++A A + + D+++K+GL D VV
Sbjct: 438 LHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 497
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+C +I +H I + S N +L ++ KE + A+ F EM
Sbjct: 498 CKCGIIDEAQKLHDRIGGQQVVS----WNAILSGFSLNKESEEAQKFFSEM 544
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++N L+ Y + ES+ LF EM + G+ PD T+ ++K+ + +G V
Sbjct: 112 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 171
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+L K GL D G+ L+ MY C+ +D A F MPE
Sbjct: 172 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A + ++I F+EML+ G++PD+ TY V+KA + G VH +
Sbjct: 419 SWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKV 478
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL SD ++ +T++ MY C ID A+ L D +
Sbjct: 479 IKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ ++ S E+ K F EML GL+PD+ T+ V+ I +G +H I
Sbjct: 520 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + D+YI +TL+ MYA C ++ + +F+++
Sbjct: 580 IKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 614
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N ++ + IE++ LF M+++ +R D ++ V A + G VH L K
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D + N +L +Y CK + A +F M +
Sbjct: 380 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQ 414
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
LHF L + P F Y ++++A A + + D+++K+GL D VV
Sbjct: 438 LHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 497
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+C +I +H I + S N +L ++ KE + A+ F EM
Sbjct: 498 CKCGIIDEAQKLHDRIGGQQVVS----WNAILSGFSLNKESEEAQKFFSEM 544
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++N L+ Y + ES+ LF EM + G+ PD T+ ++K+ + +G V
Sbjct: 112 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 171
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+L K GL D G+ L+ MY C+ +D A F MPE
Sbjct: 172 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ ++ S + K F EML GL+PD+ T+ V+ I +G +H I
Sbjct: 456 SWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 515
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + D+YI +TL+ MYA C ++ + +F+++
Sbjct: 516 IKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 550
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
+ +F+N+ P + +N L+ Y K +E+++LF+++L L+PD+ TYP V KA
Sbjct: 57 AKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC 116
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +H+ + K GL D +G++L+ MY C + A LF+EMPE
Sbjct: 117 GGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPE 169
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y E++ LF EM K+ + D +T+ V+ A Q + G +H+LI
Sbjct: 376 SWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLI 435
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L +++ + LL MYA C +D A ++F +P+
Sbjct: 436 IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 56 LFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
LFN MP + +NT+I Y ++ ++++ F M + G P+++T + + + L
Sbjct: 163 LFNE-MPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLL 221
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H + G D +I + L+ MY C ++ A +F++MP+
Sbjct: 222 DLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPK 270
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + A+N++I Y I I+LF M G++P T ++ + + G
Sbjct: 268 MPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG 327
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + + D ++ ++L+ +Y C +++ A+ +F +P+
Sbjct: 328 KFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPK 371
>gi|255570436|ref|XP_002526177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534554|gb|EEF36253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 293
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 32 DHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDE 89
D N ++ S I + + R +F+ + + L +N+LI YA+ E+++ F+
Sbjct: 98 DRNYFVWSSMISGYCKLGDVKEARCIFDRIPIRNLVNWNSLICGYAQNGFCEEALEAFEN 157
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M G PD +T V+ A Q L+ VG VH + + G+ +++I N L+ MYA C +
Sbjct: 158 MQADGFEPDEITVVGVLSACAQLGLLDVGKDVHRMAYNKGIKLNQFIMNALVDMYAKCGD 217
Query: 150 IDFAKALFDEM 160
+ A+++F+ M
Sbjct: 218 LTTARSIFEGM 228
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNT---YIISRFILT---SLPISLHFTRS 55
+SR IE L + H Q+ LK+ H Y+I+R + S S + +
Sbjct: 21 LSRLIEQCKNLRELKKTHTQI----LKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATN 76
Query: 56 LFNNVM-PPLFAYNTLIRAYAKTSCS-----IESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
+F+ + P L AYN +IRAY +++ L+ +M + P+ LT+PF++K
Sbjct: 77 VFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGC 136
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q L G ++H+ + K G D Y+ N+L+ +Y A + A+ +FDEM
Sbjct: 137 TQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEM 187
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML---KTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+ +N++I A+ + ES++LF EM ++PD +T V+ A Q I G
Sbjct: 223 IITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKW 282
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + + G+ D IG L+ MY C ++ A +F+EMPE
Sbjct: 283 VHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPE 324
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPPLFA 66
+L++ T HQ+ A + L+ N Y+ FI + + R +F+ P A
Sbjct: 27 SLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGA 86
Query: 67 -YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N + R YA+ +C ++ + LF M + G P+ T+P VVK+ G VH ++
Sbjct: 87 TWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVV 146
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKA--LFDEM 160
K G S+ ++G L+ MY+ + A A +F EM
Sbjct: 147 AKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEM 183
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML-------KTG----LRPDNLTYPFVVKASDQC 112
++++N LI Y + E+++ F ML K G + P++ T V+ A +
Sbjct: 281 VYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRL 340
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ +G VH +G + ++GN L+ MYA C I+ A +FD
Sbjct: 341 GDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFD 386
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-----LHFTRSLFNNV 60
+ T+ Q T QL A L+ ++ Y ++ +L+ L S + RS+F ++
Sbjct: 8 LTTVAQKCNTLTQLKQLHAHILRCRINDTPYALAP-LLSVLATSNDASFFSYARSIFRHL 66
Query: 61 MP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG--- 116
F +NT+IR Y + + ++ + ML+ G+ +N T+P ++KA L
Sbjct: 67 TNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSN 126
Query: 117 -VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
VG VH + K GL +D Y+ + + Y+ +E+D A+ LFDE
Sbjct: 127 IVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDE 170
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ ++ AY++ S E + LF EM G P+ V+ A + G VHS
Sbjct: 209 SWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYA 268
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ L S+ + L+ MY+ C ++ A ++FD
Sbjct: 269 RRFHLESNPILATALVDMYSKCGCVESALSVFD 301
>gi|255569403|ref|XP_002525669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535105|gb|EEF36787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 494
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 54 RSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
+SL NV PL+ +N +IR+ K +++ ++ ML++G+ + T+P ++KA
Sbjct: 5 QSLLMNVKRPLYLWNLMIRSSTKAGLFFQALDIYSSMLQSGVHGNGFTFPLLLKACSNTN 64
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I G +HS + ++G ++ TLL MY+ C ++ ++ +FDEMP
Sbjct: 65 SIRDGTKIHSHLIQLGFQ-HVFVMTTLLDMYSKCYDLASSRKVFDEMP 111
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 52/98 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L+ + ++I AY +++++LF+ +L T ++P+ T ++ A + +G +
Sbjct: 314 LYLWTSMIAAYTHLGYPVQALRLFNTLLGTAIKPNEATLATILSACADLGSLSMGEEIEE 373
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I GLHS + +L+ M+ C ++ AKA+F+ +
Sbjct: 374 YILANGLHSSVQVQTSLIHMFCRCGSLEKAKAVFERLA 411
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H R+LF+ + L ++ T+I Y E+ LF++M + +R D + + ++
Sbjct: 199 VHEARTLFDMMHEKSLISWTTVIGGYVDFGNVREAFSLFNQM-RISMRLDFIVFITLISG 257
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + + SVHSL+ K G I N L+ MY+ C ++ A+ FD
Sbjct: 258 CAREGNLLLASSVHSLLVKYGCDDKDPIDNLLVTMYSKCGDLISAQRAFD 307
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+R +F+ + M ++N++I AY + E+I + +M G P + T+ +
Sbjct: 103 SRKVFDEMPMRSTVSWNSIISAYCRFFLVDEAISMLQKMRLIGFVPTSTTFLCFLPI--- 159
Query: 112 CLLIGVGGSVHSLIFKVGL--HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
CLL G S+ FK GL SD + N LL MY ++ A+ LFD M E
Sbjct: 160 CLL-QHGLSIQCCAFKFGLLEGSDIPLTNALLNMYVKHGQVHEARTLFDMMHE 211
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ +L +++ + Y+ S + + S + + +S+F+ + + ++N+LI Y +
Sbjct: 172 QIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNG 231
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKYIG 137
E++K+F EM+K G+ PD +T VV A I G +H+ + K +D +G
Sbjct: 232 PVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILG 291
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
N LL MYA C I+ A+ +FD MP
Sbjct: 292 NALLDMYAKCNRINEARIIFDMMP 315
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 84/181 (46%), Gaps = 33/181 (18%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTL 70
S++A ++ A +K+ T+I +R I + + R LF+ ++ +F++N++
Sbjct: 32 SRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSI 91
Query: 71 IRAYAKTSCSIESIKLFDEMLKT-------------------------------GLRPDN 99
I A+ K+ +++ +F++M + G +
Sbjct: 92 ICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNE 151
Query: 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
++ + A + +G +HSL+++ SD Y+G+ L+ MY+ C +++A+++FDE
Sbjct: 152 YSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDE 211
Query: 160 M 160
M
Sbjct: 212 M 212
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+N+M + +N LI + + E++ LF + + + P + T+ ++ A
Sbjct: 339 RYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANL 398
Query: 113 LLIGVGGSVHSLI------FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G HS + F+ G SD ++GN+L+ MY C ++ +F M E
Sbjct: 399 ADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLE 454
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+ I K S+ +I N L+ +Y C +D A+ LFD M E
Sbjct: 41 VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLE 82
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 40 RFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRP 97
RF S L + R +F ++ P F+YNTLIRA ++++ +++ +F EM++ + P
Sbjct: 28 RFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEP 87
Query: 98 DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ T+P V KA + + G VH L K GL SD+++ + ++RMY +C ++ A LF
Sbjct: 88 NCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLF 147
>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 681
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHF-TRSLFNN--VMPPLFAYNTLIRAYAKT 77
Q+ A + + +++++ ++ + + +LH +S+ N ++ PL +N LI +YAK
Sbjct: 64 QVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPL-PWNVLIASYAKN 122
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E I + M+ G+RPD TYP V+KA + L + G VH I S Y+
Sbjct: 123 ELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVC 182
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N L+ MY + + A+ LFD M E
Sbjct: 183 NALISMYKRFRNMGIARRLFDRMFE 207
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N++I YA+ + S E+ L EML G +P+++T ++ + + G H
Sbjct: 346 LCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHC 405
Query: 124 LIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + D + N+L+ +YA +I AK + D M +
Sbjct: 406 YILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSK 445
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 52/100 (52%)
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
PL N LIR A+ + ++ ++ GL D+ TYPFV++A L G VH
Sbjct: 10 PLRDCNVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVEGRKVH 69
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G D Y ++LL MY +DFA+ +FDEMP+
Sbjct: 70 AAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQ 109
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA-- 66
I + K + ++ A +KT + Y S + + ++ + F R +F+ MP F
Sbjct: 56 IGVMKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDE-MPQRFLVL 114
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL-- 124
+N ++R Y + ++ L +EM ++G PD +T V A + + +G + +
Sbjct: 115 WNMMMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMD 174
Query: 125 -IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+F L + N LL MY ++ A +F +MPE
Sbjct: 175 GVFGFSLP----VANALLDMYTKNGYLEEAVKMFQQMPE 209
Score = 35.4 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
L + +I A + E++ LF +M + PD T VV C IG G
Sbjct: 243 LILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFT---VVTLLTCCANIGALDQGEW 299
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H + D +G L+ MY+ C +D + +F M
Sbjct: 300 IHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRM 339
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F V + A+N++I Y + + E+++LFD+M + PD +T V+ A
Sbjct: 392 ARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACAS 451
Query: 112 CLLIGVGGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMPE 162
VG S+H K GL S Y+G LL YA C + + A+ +FDEM E
Sbjct: 452 VGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGE 503
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS---LHFTRSLFNNVM-PP 63
+L+ + KT ++ AL + L + ++ L SL S + R +F+ + P
Sbjct: 44 SLLGICKTVSSLRKIHALLVVHGLSED--LLCETKLVSLYGSFGHVECARLMFDRIRNPD 101
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVH 122
L+++ +IR Y E ++ ++ L+ L DN+ + V+KA + G +H
Sbjct: 102 LYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH 161
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I KVG D ++ L+ MYA C+E++ ++ +FDE+
Sbjct: 162 CQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEI 198
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAY 74
H + +K+ D N+++++ + + S+F+ + L ++ +I Y
Sbjct: 255 HQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGY 314
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
A+ E++KLF + L P+ +T V+ A Q + +G SVH L K+G D
Sbjct: 315 AQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDA 373
Query: 135 YIGNTLLRMYAACKEIDFAKALFD 158
N L+ MYA C I A+ +F+
Sbjct: 374 TFENALVDMYAKCHMIGDARYVFE 397
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+R +F+ ++ + + ++I Y + C E + LF+ M + + + T +V A +
Sbjct: 191 SRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTK 250
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VH + K G + ++ LL +Y C +I A ++FDE+
Sbjct: 251 LGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDEL 299
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDE-MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++A+N +I Y + S E I+ F ML +GL PD T+P V+KA C + G +H
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKA---CRTVIDGNKIH 173
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L K G D Y+ +L+ +Y+ K + A+ LFDEMP
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMP 212
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
R++FN +P + ++NT+I YA+ + E+I++++ M + G + + T+ V+ A
Sbjct: 403 ARAVFN-WLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPAC 461
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + G +H + K GL+ D ++ +L MY C ++ A +LF ++P
Sbjct: 462 SQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 514
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I+AY + +I LF EM + ++PD LT + Q I SV
Sbjct: 313 LISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQG 372
Query: 124 LIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G D IGN ++ MYA +D A+A+F+ +P
Sbjct: 373 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP 62
R ++++ +T +++ L LK + Y+ + I L S ++ R LF+ MP
Sbjct: 154 RTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDE-MP 212
Query: 63 --PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGG 119
+ ++N +I Y ++ + E++ L GLR D++T ++ A + G
Sbjct: 213 VRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGV 267
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++HS K GL S+ ++ N L+ +YA + + +FD M
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N LI YA+T E+++LF EM+KT ++PD T V+ A Q
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQ 247
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I +G VHS I G S+ I N L+ +Y C E++ A LF+ +
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGL 296
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 7/158 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMP 62
+L+ KT + A +KT L + Y +S+ I S+ +S HF S+F+++
Sbjct: 7 SLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSV-LSPHFDGLTYAISVFDSIQE 65
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L +NT+ R +A +S + ++ L+ M+ GL P++ T+PF++KA + G +
Sbjct: 66 PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQI 125
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
H + K+G D Y+ +L+ MY + A+ +FD+
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQ 163
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+ +T ++ A I +G +H
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHV 360
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ A+ +FD M
Sbjct: 361 YIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 399
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N L+ AY +E+++LFD++ + +RPD TYP V+KA + G +H+ +
Sbjct: 73 WNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHL 132
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL D ++G++L+ MYA C + A LFDE P+
Sbjct: 133 LKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQ 169
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%)
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+ ++N +I + I+++ ++D M + ++PD LT+ + A Q + G +H
Sbjct: 373 EVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELH 432
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I L +++ + LL MYA C ++D A+ LF ++P+
Sbjct: 433 YCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPK 472
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +I Y K + ++K FD+M + G P+++T+ VV + + L + G VH +
Sbjct: 174 CWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHREL 233
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + D ++ + L+ MY C ++ AK +F+++P
Sbjct: 234 IERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIP 269
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + L ++ ++I AY + E+++LFDEM K +R D++T+ V+ A
Sbjct: 463 ARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSH 522
Query: 112 CLLIGVG 118
L+ G
Sbjct: 523 AGLVDEG 529
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
LH + LFN + PP A+ ++IR Y +S+ F ML +GL PD+ +P V+KA
Sbjct: 58 LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA-------ACKEIDFAKALFDEMP 161
+ + +G S+H I +VGL D Y GN L+ MY+ + ++ A + DEM
Sbjct: 118 CAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT 177
Query: 162 E 162
E
Sbjct: 178 E 178
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I + E +K F +ML ++P + ++ ++ A + +G +H I
Sbjct: 368 SWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 427
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G + +I ++L+ MYA C I A+ +FD M
Sbjct: 428 TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRM 462
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 48 ISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
+S+ R +F +MP L ++NT+I A+ E++ + EM L+PD+ T V
Sbjct: 248 MSVDSVRKIFE-MMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSV 306
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
+ + + I G +H + GL ++ Y+ ++L+ MYA C +
Sbjct: 307 LPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRV 351
>gi|218200986|gb|EEC83413.1| hypothetical protein OsI_28873 [Oryza sativa Indica Group]
Length = 481
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
Q+ +++ + +T +I+ I S L R LF+ + L ++ T+I Y +
Sbjct: 257 RQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQN 316
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S + E+I +F M + G +PD ++ + I G +H+ + K L +D+Y+
Sbjct: 317 SFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVK 376
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N L+ MYA C+ + A+A+FD + E
Sbjct: 377 NALIDMYAKCEHLTEARAVFDALAE 401
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP---PLFAYNT 69
SK Q+ + +K LD N Y+ + I + L + +P P+ +NT
Sbjct: 149 SKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPV-TWNT 207
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I YA+ C +++LFD M G+RPD V A + G +H ++
Sbjct: 208 VITEYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSA 267
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+D + N L+ +Y C + A+ LFD M
Sbjct: 268 TETDTSVINVLIDLYCKCSRLSAARKLFDCM 298
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVV 106
L R LF+ MP L ++ ++I Y + +I LF K P+ V+
Sbjct: 85 LRDARHLFDR-MPHRNLVSWGSVISMYTQHGRDDCAISLFAAFQKASCEVPNEFLLASVL 143
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+A Q + +G VH + K+ L ++ Y+G L+ +YA +D A +F +P
Sbjct: 144 RACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 198
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKT 77
Q+ A +K L+ + Y+ + I + + L R++F+ + +YN +I Y+K
Sbjct: 358 RQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKN 417
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E++ +F M LRP LT+ ++ S L I + +H LI K S +IG
Sbjct: 418 RDLAEAVNIFHRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIK----SRNFIG 473
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N++IR Y + + S+ +F M K + PD+ T+P V+KA+ Q GVG +H ++ +
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G D Y L+ +Y C I A LFDEMPE
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPE 152
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 48 ISLHFTRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
+S+ LF+ MP A +N LI Y +++I F ML G +P T V
Sbjct: 138 LSISDASQLFDE-MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVV 196
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ A G +H I+ L + ++G L+ MYA C + + +F+E+ E
Sbjct: 197 LSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIRE 253
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 24 ALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSI 81
A K + N ++ + I S+ + R +F+ ++ + ++ ++ +A+ C
Sbjct: 163 ACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFK 222
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E++KLF +M G +P+N T+ V KA VG SVH K D Y+G LL
Sbjct: 223 EALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALL 282
Query: 142 RMYAACKEIDFAKALFDEMPE 162
+Y +ID A+ F+E+P+
Sbjct: 283 DLYTKSGDIDDARXAFEEIPK 303
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I YA++ S E++++F +M + + P+ T+ V++A + +G +H +
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K+GLHSD ++ N L+ +YA C ++ + LF E P
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESP 403
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEML 91
N Y+ S F+ + LF+ MP ++ TLI+ YA++ +E+I+LF +
Sbjct: 81 NMYVKSDFLCDA--------SKLFDE-MPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131
Query: 92 KTGLRPDNLTYPFVVK--ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
+ G + + ++K S C +G G +H+ IFK+G S+ ++G L+ Y+ C
Sbjct: 132 REGHELNPFVFTTILKLLVSMDCGELGWG--IHACIFKLGHESNAFVGTALIDAYSVCGR 189
Query: 150 IDFAKALFD 158
+D A+ +FD
Sbjct: 190 VDVAREVFD 198
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
N+V P +NT+I + + ++++LF ML+ ++ +TY ++A +
Sbjct: 406 NDVTP----WNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEP 461
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +HSL K D + N L+ MYA C I A+ +FD M
Sbjct: 462 GLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM 504
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI---GVGGSVHSL 124
N LIR +++ S++S KL E + + P A C+ G +H
Sbjct: 6 NFLIR-FSRRGFSVQSAKLTQEFVGH-VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCE 63
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G D + N LL MY + A LFDEMPE
Sbjct: 64 ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPE 101
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 52 FTRSLFNNVMPPL-FAYNTLIR----AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ F+N++ P +++N +IR A+ K+S ++E + M GL+P+NLTYPF+
Sbjct: 78 YASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALE---FYSRMKFLGLKPNNLTYPFLF 134
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A L + G H + + GL D ++ ++L+ MYA C ++ A+ +FDE+ +
Sbjct: 135 IACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQ 190
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I YA+ S E+IKLF +M + PD +T ++ A + +G V
Sbjct: 297 WNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYAS 356
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G D Y+G L+ MYA C +D A +F MP+
Sbjct: 357 ERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPK 392
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + L ++N++I Y+K + E++ LF EM++ G +P+ ++ V+ A +
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G V + + + + ++G+ L+ MY C ++ A+ +FD M +
Sbjct: 241 LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKK 291
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N++IR Y + + S+ +F M K + PD+ T+P V+KA+ Q GVG +H ++ +
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G D Y L+ +Y C I A LFDEMPE
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPE 152
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 48 ISLHFTRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
+S+ LF+ MP A +N LI Y +++I F ML G +P T V
Sbjct: 138 LSISDASQLFDE-MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVV 196
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ A G +H I+ L + ++G L+ MYA C + + +F+E+ E
Sbjct: 197 LSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIRE 253
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 52 FTRSLFNNVMPPL-FAYNTLIR----AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ F+N++ P +++N +IR A+ K+S ++E + M GL+P+NLTYPF+
Sbjct: 78 YASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALE---FYSRMKFLGLKPNNLTYPFLF 134
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A L + G H + + GL D ++ ++L+ MYA C ++ A+ +FDE+ +
Sbjct: 135 IACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQ 190
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I YA+ S E+IKLF +M + PD +T ++ A + +G V
Sbjct: 297 WNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYAS 356
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G D Y+G L+ MYA C +D A +F MP
Sbjct: 357 ERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMP 391
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + L ++N++I Y+K + E++ LF EM++ G +P+ ++ V+ A +
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G V + + + + ++G+ L+ MY C ++ A+ +FD M +
Sbjct: 241 LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKK 291
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 6 IETLIQLSKTA---HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM 61
+ +L++ S T HH QL A LK D N ++ S + + + + + +FN++
Sbjct: 209 LSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA 268
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+ ++N LI +A+ ++LF +ML+ G P + TY V A + G
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKW 328
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH+ + K G YIGNTL+ MYA I AK +F +
Sbjct: 329 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 368
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL + LF+ MP + ++ LI Y+++ + E++ LF +ML G +P+ T ++
Sbjct: 155 SLEEAQDLFDK-MPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLL 213
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KAS G +H+ K G + ++G++LL MYA + AK +F+ +
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
V + ++N++I YA+ E+++LF++MLK ++P+ +T+ V+ A L+ G
Sbjct: 369 VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ 428
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ K + + T++ + ++ A +EMP
Sbjct: 429 YYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMP 470
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I + E+++LF M + GL PD T+ +KAS +IG+G +HS +
Sbjct: 409 SWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYL 468
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S + G+ LL MY C +D A FDEMPE
Sbjct: 469 IRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPE 505
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YN +I YA C+ ++LF EM L Y ++ + IG+G +H+ +
Sbjct: 308 SYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQL 367
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+GL S+ +GN L+ MY+ C +D AK F
Sbjct: 368 VLLGLSSEDLVGNALIDMYSKCGMLDAAKTNF 399
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVMPPL---FAYNTLIRAYAK 76
Q ALF + +N + ++R + S L LF + P L + +I A+A
Sbjct: 52 QARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFAS 111
Query: 77 T--SCSIESIKLFDEMLKTGLRPDNLTYPFVVK---ASDQCLLIGVGGSVHSLIFKVGL- 130
+ + +++ LF +ML+ G+ PD +T V+ AS + S+H K+GL
Sbjct: 112 APGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLL 171
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
HS+ + NTLL Y + A+ +F EMP
Sbjct: 172 HSNVVVCNTLLDAYCKHGLLAAARRVFQEMP 202
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 10/149 (6%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-----LTSLPISLH-FTRSLFNNVMPPLFAYNTLIRA 73
+Q+ + LK LD N ++ + + + S+ FT S N + A+NT+I
Sbjct: 327 NQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEV----AWNTIIVG 382
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
Y + +++ LF ML ++P +TY V++AS + + G +HSL K + D
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKD 442
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+L+ MYA C ID A+ FD+M +
Sbjct: 443 SVVANSLIDMYAKCGRIDDARLTFDKMDK 471
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + + ++ ++ YA+ C +S+ LF +M G RP+N T +K+ +
Sbjct: 158 ARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNG 217
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VG SVH KV D Y+G LL +Y EI A+ F+EMP+
Sbjct: 218 LEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPK 268
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 27 LKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIES 83
LK D + Y+ I+ L + + + F MP L ++ +I YA++ S E+
Sbjct: 232 LKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEE-MPKDDLIPWSLMISRYAQSDKSKEA 290
Query: 84 IKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
++LF M ++ + P+N T+ V++A +L+ +G +HS + KVGL S+ ++ N L+
Sbjct: 291 LELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMD 350
Query: 143 MYAACKEIDFAKALF 157
+YA C EI+ + LF
Sbjct: 351 VYAKCGEIENSVKLF 365
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+D CL SVH+ ++K+G +D ++G L+ Y+ C +D A+ +FD
Sbjct: 120 ADTCL------SVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFD 163
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
Q+ A ++T D N ++ S + + S S+ ++F + + ++ LI Y +
Sbjct: 293 QIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNG 352
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
CS E++++F EM + G+ PD+ T V+ + + G H L GL + N
Sbjct: 353 CSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSN 412
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ +Y C I+ A LFDEM
Sbjct: 413 ALVTLYGKCGSIEDAHRLFDEM 434
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ T++ + + E++++F M G+ D T+ ++ A + G +H+ I
Sbjct: 240 WTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYII 299
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++G+ L+ MY+ C+ I A+ +F M
Sbjct: 300 RTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM 333
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLK--TGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
+ +YN +I ++ ++++++ +L+ + +RP +T +V A+ +G
Sbjct: 103 IVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQF 162
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H I ++G ++ ++G+ L+ MYA + AK FDE+
Sbjct: 163 HCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEV 201
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS-VHSL 124
++ L+ YA+ + E+I LF++ML G++PD +T+ V+ A + + G S HS+
Sbjct: 441 SWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSM 500
Query: 125 IFKVGLH--SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G+ D Y ++ +Y+ ++ A+ +MP
Sbjct: 501 QKDHGIVPIDDHY--TCMIDLYSRSGKLKEAEEFIKQMP 537
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF + P + A+N +I +AK + E+I F E+ KTGL+ + V+ A
Sbjct: 263 RKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASL 322
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ G VH+ K GL + Y+G+ L+ MYA C ++D AK +F+ + E
Sbjct: 323 SMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE 372
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ +LF+ + P L + LI YA+ + ++++ + M + PD T+ V++A
Sbjct: 666 SETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACA 725
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G VHSLIF G + D+ ++L+ MYA C ++ + +F EMP
Sbjct: 726 GMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMP 776
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
+K LD N Y+ S + S + + +FN++ + +N ++ +A+ + E +
Sbjct: 336 IKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVM 395
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+ F M + G +PD T+ + A + GG +H+++ K S+ ++ N L+ MY
Sbjct: 396 EFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMY 455
Query: 145 AACKEIDFAKALFDEM 160
A + A+ F+ M
Sbjct: 456 AKSGALKEARKQFEFM 471
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + + E+ +F M+ G+ PD ++ +V A G H L+
Sbjct: 478 SWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLL 537
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
KVGL + G++L+ MY C + A+ +F MP
Sbjct: 538 VKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP 573
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+FA+N+++ Y ++ F M G+RP+ T+ V+ A I G VH
Sbjct: 107 VFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHC 166
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+FK+G + L+ MYA C+ + A+ +FD
Sbjct: 167 GVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFD 201
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFT-RSLFNNVMP--PLFAYNTLIRAYAK 76
Q L +K LD +T S I + + R +F + MP + + N LI Y
Sbjct: 531 QQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYS-MPYRNVVSINALIAGYTM 589
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKY 135
+ E+I LF E+ GL+P +T+ ++ D ++ +G +H + K G L S +
Sbjct: 590 SHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEM 648
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ +LL MY + ++ LF E+
Sbjct: 649 VCVSLLCMYMNSQRFADSETLFSEL 673
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F+++++I AYAK+ S E+++L+ EM + PD +T VV A + VG VH
Sbjct: 86 FSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRF 145
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + D +G L+ MYA C +I+ A+ +FD MPE
Sbjct: 146 VESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPE 183
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N+LI Y ++ ++ M++ G PD T+P ++KA G VH +
Sbjct: 71 FPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGV 130
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+GL +D Y+ N+L+R Y AC + A +FDEM
Sbjct: 131 VVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEM 166
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +I ++ +S++LF M G+ PD + V+ A + G VH
Sbjct: 268 IVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHE 327
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + G+ D +IG ++ MYA C I+ A +F M +
Sbjct: 328 YINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQ 366
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ +++ + +T +I+ I S L R LF+ + L ++ T+I Y + S
Sbjct: 242 QIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNS 301
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+ E+I +F M + G +PD ++ + I G +H+ + K L +D+Y+ N
Sbjct: 302 FNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKN 361
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA C+ + A+A+FD + E
Sbjct: 362 ALIDMYAKCEHLTEARAVFDALAE 385
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP---PLFAYNT 69
SK Q+ + +K LD N Y+ + I + L + +P P+ +NT
Sbjct: 133 SKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPV-TWNT 191
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I YA+ C +++LFD M G+RPD V A + G +H ++
Sbjct: 192 VITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSA 251
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+D + N L+ +Y C + A+ LFD M
Sbjct: 252 TETDTSVINVLIDLYCKCSRLSAARKLFDCM 282
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNV-MPPLFAY 67
I+LSK Q+ L +K+ + Y S I SL + +++FN + + +
Sbjct: 439 IELSK------QIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIW 492
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N++I +A+ E+IKLF+++L +G+ P+ T+ +V + + G H+ I K
Sbjct: 493 NSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIK 552
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G+ +D ++ N L+ MYA C I + LF+
Sbjct: 553 AGVDNDPHVSNALIDMYAKCGFIKEGRMLFE 583
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ A +K L+ + Y+ + I + + L R++F+ + +YN +I Y+K
Sbjct: 343 QIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNR 402
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ +F M LRP LT+ ++ S L I + +H LI K G D Y +
Sbjct: 403 DLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAAS 462
Query: 139 TLLRMYAACKEIDFAKALFD 158
L+ +Y+ C ++ AK +F+
Sbjct: 463 ALIDVYSKCSLVNDAKTVFN 482
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVV 106
L R LF+ MP L ++ ++I Y + +I LF K P+ V+
Sbjct: 69 LRDARHLFDR-MPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVL 127
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+A Q + +G VH + K+ L ++ Y+G L+ +YA +D A +F +P
Sbjct: 128 RACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 182
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH-FTRSLFNNV--MPPLFA 66
+ K+ +H QL A L+T ++H + S + +LF+++ +P
Sbjct: 22 LSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIV 81
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+L+R +++ +I + + G R D +++P ++KA + + G +H F
Sbjct: 82 FNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAF 141
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+ SD ++ L+ MYAAC I++A+ +FDEM +
Sbjct: 142 KIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQ 177
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ M L + T+I AYA++ E++++F+EM +G++PD +T V+ A
Sbjct: 301 RVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNL 360
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ VH GL S I N L+ MYA C +D A+ +F++MP
Sbjct: 361 GTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMP 409
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+++ R++F+ + + +NT+I Y + E+ KLF+EM + + PD + +V A
Sbjct: 165 INYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSA 224
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +++ + + + D ++ L+ MYA +D A F +M
Sbjct: 225 CGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKM 276
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
PL+ N LIR A+ + ++ ++ GL D+ TYPFV++A L G H
Sbjct: 13 PLWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAH 72
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K G D Y G++L+ MY +D A+ +FDEMP
Sbjct: 73 AAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMP 111
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LF 65
+++LS H A +KT + Y S + + ++ + R +F+ MP L
Sbjct: 61 VLKLSVEGRKAH---AAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDE-MPSRALV 116
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N ++R Y + ++ L ++M ++G+ PD +T V A + + +G +H +
Sbjct: 117 LWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYM 176
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V + + N LL MY ++ A LF++MP
Sbjct: 177 DNV-FGFNLPVANALLDMYTKNDCLEEAVKLFEQMP 211
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 37 IISRFILTS---LPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
IIS IL S L L R LFN L + +I A + C E++ LF +M
Sbjct: 215 IISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQM 274
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
+ PD T VV C +G G +H + + D +G L+ MY+ C
Sbjct: 275 QRVEPDRFT---VVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGH 331
Query: 150 IDFAKALFDEM 160
I+ + +F M
Sbjct: 332 IEKSLEVFWRM 342
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N +I Y K E+ +FD MLK G+ PDN T+ ++ G VHS
Sbjct: 241 VVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHS 300
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G D ++GN L+ MYA C + + +FDEM E
Sbjct: 301 KLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGE 339
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + R LF MP L A+NT+I AYA+ +E ++L+ M +G D T+P V+K
Sbjct: 125 LCYARKLFEE-MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183
Query: 108 ASDQCLLIGVGGSVHSL---IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A C+ + G V L + K GL+ + ++G L+ YA +D A DE+
Sbjct: 184 A---CIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI 236
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLF 65
TL + + Q+ A ++ ++ N + + + + S L++ + +FN + +
Sbjct: 487 TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 546
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + + E+++LF +M G++PD + ++ + G +H+ I
Sbjct: 547 SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI 606
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ + + + L+ MYA C +D+A ++D+
Sbjct: 607 VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ 640
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+YN L+ Y + + E+++L+ +M + G++PD T+ ++ G +H+
Sbjct: 445 SYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAH 504
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + + + L+ MY+ C +++AK +F+ M E
Sbjct: 505 LIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 542
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMPPLFA-YNTLIRAYAKTSCSIESIKLFDEMLK 92
N ++S F+ + + ++LF+ + A +N+++ YA ES F EML+
Sbjct: 649 NNVMVSAFVNSGRA---NDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLE 705
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEID 151
+ + D LT +V + G +HSLI K G ++ + L+ MY+ C I
Sbjct: 706 SDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAIT 765
Query: 152 FAKALFDEM 160
A+ +FD M
Sbjct: 766 KARTVFDNM 774
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 75/151 (49%), Gaps = 8/151 (5%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILT--SLPISLHFTRSLFNNVMPP-LFAYNTLIRA 73
H QL +L +K + + ++ ++ S ++ R++F+N+ + ++N +I
Sbjct: 729 EHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISG 788
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI---FKVGL 130
Y+K CS E++ L++EM K G+ P+ +T+ ++ A L+ G + + + + +
Sbjct: 789 YSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEA 848
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
++ Y ++ + ++ AK ++MP
Sbjct: 849 KAEHYT--CMVDLLGRAGRLEDAKEFVEKMP 877
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N++I A A+ +++ LF M ++G + + ++ AS IG G +H +
Sbjct: 345 WNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLV 404
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L+SD +G+ L+ MY+ C ++ A +F + E
Sbjct: 405 RNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLE 440
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 52 FTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
R++F+ V+P + YN +IR+Y +++ +F +M+ G PD+ TYP V+KA
Sbjct: 85 LARNVFD-VIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKAC 143
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H +FKVGL + ++GN L+ +Y C + A+ + DEM
Sbjct: 144 SCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEM 194
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ +F N+ L ++N +I Y K S +S+ L+ +M K + PD +T V++A
Sbjct: 254 YVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACG 313
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H + + L + + N+L+ MYA C ++ AK +FD M
Sbjct: 314 DLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRM 363
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 86 LFDEMLKTGLRPDN--LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
L + K+ + P N L + K DQ I +VHS +F + H + +G L+R
Sbjct: 17 LVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRA 76
Query: 144 YAACKEIDFAKALFDEMPE 162
YAA E A+ +FD +PE
Sbjct: 77 YAARGEPGLARNVFDVIPE 95
>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 454
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R+ FN +F++N+LI A++ SIES++ F M K L+P+ T+P +KA
Sbjct: 35 RTWFNKYFEKTNVFSWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFPCAIKACSS 94
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L + G H G SD ++ + L+ MY+ C + A+ LFDE+
Sbjct: 95 LLDLHWGKQTHQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEIT 144
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASD 110
+R +F+ ++ ++N++I YA+ S E+ ++F M+K G ++ + +T ++ A
Sbjct: 246 SRQVFDEIVEKDAISWNSMIAVYAQNGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACA 305
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H + ++GL + +G +L+ MY C + A+ FD M E
Sbjct: 306 HSGALQTGKCIHDQVIRMGLDDNVIVGTSLIDMYCKCGRVQMARKTFDGMKE 357
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEML---------KTGLRPDNLTY 102
R LF+ + + + ++I Y + + E++ LF + L K + D++
Sbjct: 136 ARILFDEITHRNIVIWTSMITGYIQNDHAHEALLLFKQFLIEESERNEEKDEVLMDSVAM 195
Query: 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
V+ A + G+ VH + K GL D I NTLL YA C E+ ++ +FDE+ E
Sbjct: 196 VSVLSACSRISGKGMTKGVHGFVVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVE 255
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93
Y+ R IL++ R +F+++ + ++N++I Y+K E+I LF EML+
Sbjct: 181 AYVACRLILSA--------RQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQL 232
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
G+ D T ++ AS + + +G VH I G+ D + N L+ MYA C + FA
Sbjct: 233 GVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFA 292
Query: 154 KALFDEM 160
K +FD+M
Sbjct: 293 KHVFDQM 299
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L + LF+ + P F YN LIR Y+ ++ ++S+ LF +M+ G P+ T+PFV+KA
Sbjct: 87 LRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKA 146
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH+ K+G+ + N +L Y AC+ I A+ +FD++ +
Sbjct: 147 CAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISD 200
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 59 NVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N MP + ++N++I + E+++LF M +G+ PD+ T ++ +
Sbjct: 328 NHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLA 387
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G H I + + N+L+ MYA C + A +F MPE
Sbjct: 388 LGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPE 433
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Query: 30 SLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLF 87
L +++ I+++F + + + + +F ++ P F +N +IR +A + S++L+
Sbjct: 747 GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELY 806
Query: 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+M++ GL+PD +PF +K+ + G +H + G +D ++ L+ MYA C
Sbjct: 807 SKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKC 866
Query: 148 KEIDFAKALFDEM 160
+I+ A+ +FD+M
Sbjct: 867 GDIEAARLVFDKM 879
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 1 MISRQI-ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRF-ILTSLPISLHFTRSLFN 58
M SRQ+ L Q QL + KT + H+T+ ++ L + SL R +F+
Sbjct: 1 MRSRQVLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFD 60
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIG 116
P + +N+ +R+Y + E+++LF M+ T G PDN T P +KA ++
Sbjct: 61 ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE 120
Query: 117 VGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+G +H K + SD ++G+ L+ +Y+ C ++ A +F+E
Sbjct: 121 LGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEE 164
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++ ++I YA + E++ FD M +G+ P+ ++ V+ A + G HS
Sbjct: 884 LVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHS 943
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ + G D + ++ MY+ C +D A+ LFDE
Sbjct: 944 YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDE 979
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 51/97 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ L+ YA+ + +S+ +F ML G++PD + ++ AS + + +H
Sbjct: 373 VVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHG 432
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + G +S+ ++G +L+ +Y+ C + A LF M
Sbjct: 433 YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGM 469
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL---I 115
MP + +++T+I YA + E++ LF EM++ P+++T VV A C + +
Sbjct: 267 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVT---VVSALQACAVSRNL 323
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H + G D + L+ MY C D A LF +P+
Sbjct: 324 EEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPK 370
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P + +++ Y + + E++ LF +M + + D +T VV A Q L + G
Sbjct: 168 PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSC 227
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYA--ACKEIDFAKALFDEMPE 162
VH L+ + D + N+LL +YA C++I A LF +MPE
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKI--AANLFSKMPE 269
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R LF+ L ++ +I +Y ++I LFD+M+K G+RP ++T+ V+
Sbjct: 969 SLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 1028
Query: 108 ASDQCLLIGVG 118
A L+ G
Sbjct: 1029 ACSHSGLLEEG 1039
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+HS +FK G+ D + L +YA C + A+ +FDE P
Sbjct: 23 LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETP 63
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 41/190 (21%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIIS---RFILTSLPISLHFTRSLFNNV-MPPLFAYNT 69
++ +H Q+ A L T L +++ I+ RF S L + + LF+ + P F YNT
Sbjct: 27 QSMNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNT 86
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS------VHS 123
+IR YAK+S + LF++M + + PD T+ F++KA + + S +H
Sbjct: 87 IIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHG 146
Query: 124 LIFKVGLHSDKYIGNTLLRMYAA-------------------------------CKEIDF 152
+FK G S ++ N L+ +YA E++
Sbjct: 147 AVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELEL 206
Query: 153 AKALFDEMPE 162
A+ +FD+MPE
Sbjct: 207 ARQVFDDMPE 216
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F++ MP + ++ ++ Y+K +CS E+++LF EM G+RPD +T V+
Sbjct: 204 LELARQVFDD-MPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVIS 262
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G +VHS I + G + N L+ MYA C +D A +F+ M
Sbjct: 263 ACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNM 315
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + + A+N++I Y + + E+I LFD M +TG+ PD+ T+ V+ A
Sbjct: 165 ARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAH 224
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G VH I GL + +G +L+ MY C + A+ +FD M E
Sbjct: 225 LGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKE 275
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
HQ+ A + + + ++++ + L S+ +TR +F V P F + +LI++ +K+
Sbjct: 29 HQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKS 88
Query: 78 -SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ SI S+ + M+ + + P N T+ V+K+ + G VH + G D Y+
Sbjct: 89 HNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYV 148
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
L+ +Y C ++ A+ +FD++ E
Sbjct: 149 QAALVALYGKCGDLINARKVFDKIRE 174
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R++F+ + + + ++N +I Y +T E+++LF EM+KT +RPD T V+ AS +
Sbjct: 148 ARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASAR 207
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I +G VHS I G S+ I N L+ Y+ C E++ A LF
Sbjct: 208 SGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLF 253
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + S+F + P L +NT+ R +A + + ++KL+ M+ GL P++ T+PF++K
Sbjct: 12 GLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLK 71
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + G +H + K+G D Y+ +L+ MY + ++ A +FD
Sbjct: 72 SCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFD 122
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N LI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 261 VISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHV 320
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MY+ C +I+ A +F+ M
Sbjct: 321 YIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM 359
>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 703
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 17 HHHH-------QLPALFLKTSLDHNTYIISRF--ILTSLPISLHFTRSLFNNVMPPLFAY 67
HHH QL AL L L + ++ R + TS P L S+ + PL Y
Sbjct: 83 HHHRSHLRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTLPL-PY 141
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N LI + + ++++ + EM K G+ PD TYP V++A + + +G +VH
Sbjct: 142 NVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAG 201
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+ + + N L+ MYA C ++ A+ +FD M
Sbjct: 202 AGMDGNLFFQNALMSMYAKCGDLASARKVFDGM 234
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 53/101 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +NT++ ++A + C+ E+ +F EM+ G++P+ +T + + + G +
Sbjct: 373 PGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQEL 432
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H I K G + + N+L+ MY+ + A+ +FD M +
Sbjct: 433 HGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDD 473
Score = 42.4 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT+ Y + ++ L EM++ G D +T + A + + +G +H L
Sbjct: 277 WNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAV 336
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
++ + + N L+ MYA CK+++ A+ LF
Sbjct: 337 RMCCDQVESVSNALITMYARCKDMECARMLF 367
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV-H 122
+ +Y ++I Y +++LF++M+ +G++PD++ V+ A L+ G + +
Sbjct: 476 MISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFN 535
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
++ G+ + ++ +YA ++ A+ + D P
Sbjct: 536 KMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTP 574
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS--LHFTRSLFNNVMPPLFAYNTLIRAYAKTS 78
Q+ AL LK+ + + Y+++ I T TR + + L + +L+ AYA+
Sbjct: 334 QIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDG 393
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E+++L+ EM G++PD+ ++ A G VH I K G SD + GN
Sbjct: 394 QGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGN 453
Query: 139 TLLRMYAACKEIDFAKALFDEMP 161
+L+ MYA C I+ A F +P
Sbjct: 454 SLVNMYAKCGSIEDASCAFSRIP 476
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L S+F+ + P + ++N +I +++L EM K+G+ P+ T +KA
Sbjct: 162 LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKA 221
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L +G +HS + K+ + SD ++G L+ MY+ C +D A+ +F MPE
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPE 275
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYII-SRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
Q+ + + T D + ++ S IL + RSLF+ + + ++N L Y +
Sbjct: 31 QVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSD 90
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ LF +M+ +G+RP+ + ++ G +H + K+G SD + N
Sbjct: 91 MHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSAN 150
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA ++ A ++FDE+ +
Sbjct: 151 ALVDMYAKVGILEDASSVFDEIAK 174
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
G++ + +P V+KA + +G VH ++ G SD+++ N+L+ +YA C A
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 154 KALFDEMPE 162
++LFD +P+
Sbjct: 65 RSLFDAIPD 73
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 57/97 (58%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I ++ S + + F +ML+ G+ PDN TY V+ I +G +H+ I
Sbjct: 509 SWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQI 568
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+ LHSD YI +TL+ MY+ C + ++ +F++ P+
Sbjct: 569 LKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPK 605
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
++ F +SLF++ MP + ++N+L+ Y + +SI++F M + D T+ ++
Sbjct: 87 NMGFAQSLFDS-MPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVIL 145
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KA G+G VH L ++G +D G+ L+ MY+ CK++D A +F EMPE
Sbjct: 146 KACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPE 201
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A+ + ++++ LF ML++ + PD+ TY VVKA + G +H I
Sbjct: 408 SWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRI 467
Query: 126 FKVGLHSDKYIGNTLLRMYAAC 147
K G+ D ++G+ L+ MY C
Sbjct: 468 IKSGMGLDWFVGSALVDMYGKC 489
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L ++ +I Y + IE +KLF +MLK G+ TY V ++ +G
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H K D IG L MYA C+ + A +F+ +P
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLP 301
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VG 118
PP +YN +I YA+ ++++ +F + + L D ++ + A C +I G
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTA---CSVIKRHLEG 359
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H L K GL + + NT+L MY C + A +F+EM
Sbjct: 360 IQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEM 401
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLI 71
++ +H +L A +K ++ N I S + H + MP A+ +I
Sbjct: 405 QSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMI 464
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
Y ++E++K DEML G+ P+ TY +KA + + G +H ++ K
Sbjct: 465 SGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVNKTQAF 524
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S+ ++G +L+ MY C ++D A+ +FD MPE
Sbjct: 525 SNVFVGCSLIDMYMRCGKVDEARRVFDAMPE 555
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I AY + S +++++F M+ G RP+ T +KA + + G +H
Sbjct: 255 VISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHG 314
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K D ++G+ L+ MYA C E+ A+ +FD+MP
Sbjct: 315 AIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMP 352
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + ++ ++ Y K C E +L +ML G++ ++LT+ ++K+ +
Sbjct: 144 RKVFDE-MPERSIVSWTAMMNGYQKLGCHGEVARLLMDMLIAGVQGNSLTFVCLLKSCGE 202
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G VH + K G S+ + + + YA C ++ A +FD M
Sbjct: 203 RCDARLGQQVHCCVVKGGW-SNVIVDSAITHFYAQCGDVAAASTVFDRM 250
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I YA++ C E++ LF +M + ++LT ++ A I G +H+ I
Sbjct: 359 WTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQII 418
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + IG+TL+ Y E +A + + MP+
Sbjct: 419 KNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPD 454
>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHF--TRSLFNNV-MPPLFAYNTLIRA 73
+H Q+ A +K+ L+ + ++ + + +S F TR +F+ + + ++ ++I
Sbjct: 68 NHGLQIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFDGLYFRDVISWTSMITG 127
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
Y K +++ LF EML G+ P+ T V+KA + +G H +I G HS+
Sbjct: 128 YVKGEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHSN 187
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
IG+ L+ +Y E+D A+ LFDE+ E
Sbjct: 188 HVIGSALIDLYGRNYELDDARRLFDELLE 216
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASD 110
R LF+ ++ P + ++I AY + +++ F M K GL PD T+ V+ A
Sbjct: 207 ARRLFDELLEPDAICWTSVISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACG 266
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G VH+ + G + + ++L+ MY C +D ++ +FD M
Sbjct: 267 NLRRLKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMS 317
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L +N++I +A+ + E++++FDEM+K G +PD +T+ V+ A
Sbjct: 419 LITWNSMICGFAQNGWAEEALRIFDEMVKEGTKPDYITFIGVLFA 463
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHF--TRSLFNNVMPPLFA-YNTLIRAYAKTSCSIES 83
+K LD +++++ + +S H R +F+ + + + T++ YA+ CS E+
Sbjct: 143 IKFGLDFDSHVVDALV-RCYSVSGHCVSARQVFDETPEKISSLWTTMVCGYAQNFCSNEA 201
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL--IFKVGLHSDKYIGNTLL 141
++LF++M+ G P T V+ A + + +G +H + VGL +G L+
Sbjct: 202 LRLFEDMVGEGFEPGGATLASVLSACARSGCLELGERIHEFMKVKGVGLGEGVILGTALV 261
Query: 142 RMYAACKEIDFAKALFDEMPE 162
MYA EI A+ LFDEMPE
Sbjct: 262 YMYAKNGEIAMARRLFDEMPE 282
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-----PISLHFTRS 55
+IS + TL QL + H Q+ + + + + SR + +SL F R
Sbjct: 23 LISDKCTTLDQLKQV---HAQM---IVSAVVATDPFAASRLFFSCALSPFGDLSLAF-RI 75
Query: 56 LFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+ P F +NTLIRA ++ L+ M ++ + P T+PF++KA +
Sbjct: 76 FHSTPRPNSFMWNTLIRAQTHAP---HALSLYVAMRRSNVLPGKHTFPFLLKACARVRSF 132
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + K GL D ++ + L+R Y+ A+ +FDE PE
Sbjct: 133 TASQQVHVHVIKFGLDFDSHVVDALVRCYSVSGHCVSARQVFDETPE 179
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I + S ++ F EMLK ++PDN TY V+ A +G+G +H
Sbjct: 545 MVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHG 604
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K+ LHSD YI +TL+ MY+ C + + +F++ P
Sbjct: 605 QIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAP 642
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A+ + E++ LF ML+ + PD TY V+KA + G +H+ I
Sbjct: 446 SWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRI 505
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL D ++G L+ MY C I+ AK + D + +
Sbjct: 506 IKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQ 542
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+ ++N+++ + + +SI +F +M ++ + D T+ V+KA G+G VH
Sbjct: 140 VVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVH 199
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
LI ++G + D G+ LL MYA CK +D + +F E+P
Sbjct: 200 GLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIP 238
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD--NLTYPFV 105
SL + +FN++ L YN +I + E+++ F +LK+GL + +L+ F
Sbjct: 327 SLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFS 386
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
AS + L G +HSL K L S+ + N++L MY C+ + A +FDEM
Sbjct: 387 ACASIKGDLDGR--QLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEME 440
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I + I ++LF EM K G+ Y V ++ + VG +H+
Sbjct: 245 WSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHAL 304
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD +G L MYA C + A+ +F+ +P+
Sbjct: 305 KCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPK 340
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
YN +R + T C+I +++ L T +R T+ +++ + G H+ +
Sbjct: 17 YNKTLRIF--TFCTISTLQQNQTKLPTKIR----TFSHIIQECSDYNSLKPGKQAHARMI 70
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D YI N L++MY C +++A +F++M +
Sbjct: 71 VSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQ 106
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ A K+ L + I + I L S + + R L + P L +++ LI YA+
Sbjct: 77 QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNG 136
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F EM G++ + T+ V+KA + +G VH ++ G D ++ N
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
TL+ MYA C E +K LFDE+PE
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPE 220
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N++P L A+N +I Y++ +E++ LF EM K G+ + T ++K++ ++
Sbjct: 418 NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVH 477
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
V VH L K G HSD Y+ N+L+ Y C ++ A+ +F+E
Sbjct: 478 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 520
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNN-VMPPLFAYNTLI 71
+ H Q+ L +K+ + Y+++ I + S + +F + L ++ ++I
Sbjct: 474 QVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 533
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
AYA+ E++KLF EM L+PD ++ A G +H I K G
Sbjct: 534 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 593
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D + GN+L+ MYA C ID A F E+ E
Sbjct: 594 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTE 624
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 55 SLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
S+F + P + ++N +I ++++L +M ++G+ P+ T +KA
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMG 373
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L +G +HS + K+ + SD ++ L+ MY+ C ++ A+ F+ +PE
Sbjct: 374 LKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE 422
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
++ LF+ + + ++N L Y + E++ LF EM+ +G++P+ + +V A
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H + K+G D + N L+ MYA ++ A ++F+++ +
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 321
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F + L + P LI+ + S ++ + + + K P +++Y ++
Sbjct: 9 FQKPLHQRLHLPFKPAPKLIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCT 68
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H+ I K GL D I N L+ +Y+ C+ +A+ L DE E
Sbjct: 69 TKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSE 119
>gi|50253500|gb|AAT71952.1| At3g21470 [Arabidopsis thaliana]
gi|53850541|gb|AAU95447.1| At3g21470 [Arabidopsis thaliana]
Length = 442
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 32 DHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDE 89
+ N ++ S + I +H R++F V L +NTLI YA+ S ++I F
Sbjct: 124 EKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFN 183
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M G PD +T ++ A Q + VG VHSLI G+ ++++ N L+ MYA C +
Sbjct: 184 MQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGD 243
Query: 150 IDFAKALFD 158
++ A ++F+
Sbjct: 244 LENATSVFE 252
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIIS---RFILTSLPISLHFTRSLFNN 59
S+ + ++ + T + AL + +L H+ +++ RF S LH+ LF+
Sbjct: 182 SQSLASMAEACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQ 241
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL----L 114
+ P F YNTLIR Y+K+S +S++LF++M + + PD T+ F++K + L
Sbjct: 242 IHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPL 301
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I +H + K+G ++ N L+ +YAA A +F+EM
Sbjct: 302 IVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEM 347
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F MP + ++ ++ YA+ S E+++LF EM G+RPD + V+
Sbjct: 368 LELARQVFYE-MPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVIS 426
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G VH I + G + N L+ MYA C +D A +F+ M
Sbjct: 427 ACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNM 479
>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
Length = 523
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 26 FLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIES 83
F + + N+++ S I I +H S+F V L +NTLI YA+ S ++
Sbjct: 199 FFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYRVFARDLVIWNTLITGYAQNGYSGDA 258
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
I F M G PD +T V+ A Q + VG VHSLI + G+ ++++ N L+ M
Sbjct: 259 IDAFYNMQGEGYEPDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIELNQFVSNALIDM 318
Query: 144 YAACKEIDFAKALFDEM 160
YA C +++ A ++F+ +
Sbjct: 319 YAKCGDLENATSVFESL 335
Score = 42.0 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL--IGVGGSVH 122
F + LI+ + I+++ L+ + + G+ P ++KA C++ + +G +H
Sbjct: 12 FHVSNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWV-PLILKAC-ACVVPRVVLGKLLH 69
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S K G+ SD +G++L+ MY + A+ +FDEMPE
Sbjct: 70 SESIKFGVCSDVMVGSSLISMYGKWGCVVSARKVFDEMPE 109
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
PL+ N LIR A+ + ++ ++ GL D+ TYPFV++A L G H
Sbjct: 13 PLWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAH 72
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K G D Y G++L+ MY +D A+ +FDEMP
Sbjct: 73 AAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMP 111
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP L +N ++R Y + ++ L ++M ++G+ PD +T V A +
Sbjct: 104 RKVFDE-MPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSR 162
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G +H + V + + N LL MY ++ A LF++MP
Sbjct: 163 ARDLSLGRRIHVYMDNV-FGFNLPVANALLDMYTKNDCLEEAVKLFEQMP 211
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 37 IISRFILTS---LPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
IIS IL S L L R LFN L + +I A + C E++ LF +M
Sbjct: 215 IISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQM 274
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
+ PD T VV C +G G +H + + D +G L+ MY+ C
Sbjct: 275 QRVEPDRFT---VVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGH 331
Query: 150 IDFAKALFDEM 160
I+ + +F M
Sbjct: 332 IEKSLEVFWRM 342
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H R++F+ + P + +NTL+ Y + ++I+LF M ++PD T ++ +
Sbjct: 367 VHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSS 426
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++ G VHS + LH+D ++ + L+ MY+ C +I A+++F++M E
Sbjct: 427 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTE 480
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
RS+FN + + +N++I S + E+ F +M + G+ P +Y ++ + +
Sbjct: 472 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 531
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G +H+ + K G + Y+G+ L+ MYA C +D A+ FD M
Sbjct: 532 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 579
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 54 RSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
R + P ++ ++ A+T ++++LF M ++G+ D ++ V+ A Q
Sbjct: 197 RLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQAC 256
Query: 114 LIG--------VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G ++H+L+ + G SD+++GN+L+ MY C E+D A +F+ +P
Sbjct: 257 ATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP 312
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 66 AYNTLIRAYAKTSCSI-ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++NT+I A A++ E+++++ M GL P + T V+ A +G G H +
Sbjct: 107 SWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGV 166
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KVGL +++++ N LL MY C + A LF M
Sbjct: 167 AVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGM 202
Score = 43.1 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYA 75
H Q+ A +K D N Y+ S I + + ++ R F+ +M + A+N +I YA
Sbjct: 536 HGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYA 595
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+ ++++LF+ ML T +PD +T+ V+ L+
Sbjct: 596 QNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLV 635
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H R++F+ + P + +NTL+ Y + ++I+LF M ++PD T ++ +
Sbjct: 90 VHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSS 149
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++ G VHS + LH+D ++ + L+ MY+ C +I A+++F++M E
Sbjct: 150 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTE 203
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
RS+FN + + +N++I S + E+ F +M + G+ P +Y ++ + +
Sbjct: 195 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 254
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G +H+ + K G + Y+G+ L+ MYA C +D A+ FD M
Sbjct: 255 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 302
Score = 43.1 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYA 75
H Q+ A +K D N Y+ S I + + ++ R F+ +M + A+N +I YA
Sbjct: 259 HGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYA 318
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+ ++++LF+ ML T +PD +T+ V+ L+
Sbjct: 319 QNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLV 358
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G SD+++GN+L+ MY C E+D A +F+ +P
Sbjct: 3 GFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP 35
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDH---NTYIISRFI-LTSLPISLHFTRSLFNNVMPP-L 64
I L + H++Q+P ++ K +H + +++ + + S S+ + +F++ P +
Sbjct: 36 ISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNV 95
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+ Y LI + + I L+ +M+ + L PD+ V+KA L + G VHS
Sbjct: 96 YLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQ 155
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+GL S++ I L+ +Y C + A+ +FDEMPE
Sbjct: 156 VLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPE 193
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 54/106 (50%)
Query: 57 FNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
F++ + + +I + S ++++F M + + P+ +T V+ A + +
Sbjct: 207 FDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQ 266
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G V S + K + + ++G L+ MY+ C +ID A+ +F++M E
Sbjct: 267 LGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKE 312
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV-H 122
+ YN++I +A S+E+++LF ++K G P ++T+ V+ A L +G + H
Sbjct: 315 VITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFH 374
Query: 123 SLIFKVGL 130
S+ G+
Sbjct: 375 SMAKDYGI 382
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 40/186 (21%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLF---NNVMPPLFAYNT 69
T Q+ A +KT L +T SR + + P +++ +F N+ P F +NT
Sbjct: 37 TMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNP--FVWNT 94
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+IR ++++S +I +F +ML + ++P LTYP V KA + G +H ++ K
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIK 154
Query: 128 VGLHSDKYIGNTLLRMY-------------------------------AACKEIDFAKAL 156
GL D +I NT+L MY A C ID A+ L
Sbjct: 155 EGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNL 214
Query: 157 FDEMPE 162
FDEMP+
Sbjct: 215 FDEMPQ 220
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NT+I Y+K S E++KLF EM K RPD +T ++ A + +G +H
Sbjct: 821 IVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHG 879
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + G S+ ++ N L+ MY C + A+ LFD +PE
Sbjct: 880 CILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPE 918
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F++++ +F +N ++ YAK ESI LF +M K G+ ++ T+ ++K
Sbjct: 506 RRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFAT 565
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G +H ++K+G S + N+L+ Y E+D A LFDE+
Sbjct: 566 LGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDEL 614
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +LI AY + ++I+LF EM G+ PD + V+ A + G VH+ I
Sbjct: 722 SWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYI 781
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K + + N L+ MYA C ++ A +F ++P
Sbjct: 782 RKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIP 817
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMP-- 62
L++ K + Q+ +L +KT L++ ++ S+ F S L + SLF
Sbjct: 33 NLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHH 92
Query: 63 --PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+F +N+LIR Y+ +S + S+ LF ML G++P++ T+PF+ K+ + G
Sbjct: 93 KHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQ 152
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+H+ K+ LH + ++ +++ MYA+ E+DFA+ +FD+
Sbjct: 153 LHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDK 191
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + + ++N +I Y ++ E+I F EM + + P+ T V+ A
Sbjct: 216 ARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGH 275
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G + S + G S+ + N L+ MY C E D A+ LFD + E
Sbjct: 276 TRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEE 326
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + ++NT+I Y+ S E++ LF+ ML++ ++P+++T+ ++ A
Sbjct: 317 ARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACAC 376
Query: 112 CLLIGVGGSVHSLIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G VH+ I K + S+ + +L+ MYA C I+ A+ +F M
Sbjct: 377 LGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM 426
>gi|302790315|ref|XP_002976925.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
gi|300155403|gb|EFJ22035.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
Length = 395
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ V P +F YN ++ AYAK ES+ LF M G+ PD +T+ ++ +
Sbjct: 131 ARQVFDKVRDPDVFVYNVMVAAYAKDGLYEESLGLFQRMQMEGITPDKITFLAMLDSCQD 190
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKY-IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G VH +I + GL S I L+ MY+ C +++ AKA+F+ M E
Sbjct: 191 ERALKTGQLVHRMIEETGLGSAMIDISTGLISMYSKCGDLEAAKAIFEAMEE 242
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIR 72
+K HH +L A K I + L + + +++L V P + + I
Sbjct: 3 AKAIHHRLELDAFLGKN--------IVKMYLKCGSV-MDASKALQEMVEPDVTLWTETIA 53
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
+ K + E++++F M G+ P+ +T+ + A + C + +H I + G S
Sbjct: 54 EHTKRGMAKEALRIFQTMQLNGVAPNKITF---LTALNSCSRLEDLRDIHDKIVQGGAES 110
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + T++ Y+ A+ +FD++
Sbjct: 111 NPMVATTIIHRYSKFSSSGKARQVFDKV 138
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 39 SRFILTSLPI------SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEML 91
SR +LT L S+ +TR LF +V P F +N+LI+A + S++++ + ML
Sbjct: 41 SRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRML 100
Query: 92 KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
+ + P T+ V+KA L+ +G VHS +F G S+ ++ L+ YA
Sbjct: 101 HSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPR 160
Query: 152 FAKALFDEMPE 162
A+ +FDEMP+
Sbjct: 161 VARKVFDEMPQ 171
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + A+N++I Y + + E++++F++M ++G PD+ T+ V+ A Q
Sbjct: 163 RKVFDE-MPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQ 221
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H I G+ + + +L+ M++ C ++ A+A+FD M E
Sbjct: 222 LGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNE 272
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 21 QLPALFLKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ + +K LD N+Y S + + L R +F + P L ++N+LI A++
Sbjct: 272 QIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKG 331
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ LF EM +GLRPD +T ++ A + G S+HS + K+GL D + N
Sbjct: 332 LLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSN 391
Query: 139 TLLRMYAACKEIDFAKAL 156
+LL MYA C +DF+ A+
Sbjct: 392 SLLSMYARC--LDFSSAM 407
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 18 HHHQLPALFLKTSLDHNT----YIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLI 71
H H L + L HNT ++I+ + P S R +F+ ++ P+ ++ +I
Sbjct: 65 HRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDS---ARVVFDGMLDRNPV-SWAAVI 120
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
A+A+ S +++ LF ML++G PD + A + +G+G VH+ K
Sbjct: 121 AAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESG 180
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEM 160
SD + N L+ MY+ + ALF+ +
Sbjct: 181 SDLIVQNALVTMYSKSGSVGDGFALFERI 209
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCL-LIGVGGSV 121
L ++ ++I A+ ++++++F EM+ G+ P+ + V +A + + G +
Sbjct: 214 LISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQI 273
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
H + K L + Y G +L MYA C E+D A+ +F
Sbjct: 274 HGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVF 309
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ A + + KLF + ++ D ++ V+ AS + + VH+ F
Sbjct: 421 WNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAF 480
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KVGL D + N L+ YA C +D A LF+ M
Sbjct: 481 KVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIM 514
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSI 81
AL +K +L + +++++ I + + + LF V+ P + YN +IRA S
Sbjct: 9 ALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYS 68
Query: 82 ESIKLFDEMLKTG---------LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
+I + +ML+ + PD T+PFVVKA + L +G VH+ FK G S
Sbjct: 69 LTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKS 128
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
N L+ MY C + A LFDEM E
Sbjct: 129 HLITENALIDMYTKCDNLLDAHNLFDEMHE 158
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R+LF+ MP + ++ +I Y + I+++ +F EM G+ PD + V+ A
Sbjct: 180 ARALFDE-MPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACA 238
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + G +H + GL I N L+ MY C ID A LFD+M
Sbjct: 239 KLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQM 288
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
YN LI Y+ S +++ LF +M K G+ + +T ++ + +G G S+H+
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSV 186
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL D +GN LL MY C +DFA+ LFD MPE
Sbjct: 187 RFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPE 222
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +R A+ E++ L+ +ML +G P+ T+PF K+ L G +H +
Sbjct: 23 SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
K G + ++ +L+ MY C I A+ +FDE
Sbjct: 83 IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDE 116
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ F R LF+ MP L +N +I YA+ + + L+ +M TG+ PD +T V+
Sbjct: 209 SVDFARKLFDG-MPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVL 267
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G V I G + ++ N L+ MYA C + A+A+FD M E
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTE 323
>gi|297740419|emb|CBI30601.3| unnamed protein product [Vitis vinifera]
Length = 501
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
Q+ A K+ L + I + I L S + + R L + + P L +++ LI YA+
Sbjct: 67 QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNG 126
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F EM G++ + T+ V+KA + +G VH ++ G D ++ N
Sbjct: 127 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 186
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
TL+ MYA C E +K LFDE+PE
Sbjct: 187 TLVVMYAKCDEFLDSKRLFDEIPE 210
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F NTL+ YAK ++S +LFDE+ + + N + + +S G +H
Sbjct: 182 VFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCLRDSSR-------GKIIHG 234
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G D + N L+ MYA ++ A ++F+++ +
Sbjct: 235 YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 273
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%)
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
LI+ + S ++ + + + K P +++Y ++ + G +H+ I K G
Sbjct: 17 LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 76
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L D I N L+ +Y+ C+ +A+ L DE E
Sbjct: 77 LSDDPSIRNHLINLYSKCRNFGYARKLVDESSE 109
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
YN LI Y+ S +++ LF +M K G+ + +T ++ + +G G S+H+
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSV 186
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL D +GN LL MY C +DFA+ LFD MPE
Sbjct: 187 RFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPE 222
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +R A+ E++ L+ +ML +G P+ T+PF K+ L G +H +
Sbjct: 23 SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
K G + ++ +L+ MY C I A+ +FDE
Sbjct: 83 IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDE 116
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ F R LF+ MP L +N +I YA+ + + L+ +M TG+ PD +T V+
Sbjct: 209 SVDFARKLFDG-MPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVL 267
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G V I G + ++ N L+ MYA C + A+A+FD M E
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTE 323
>gi|297845488|ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336467|gb|EFH66884.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 85/165 (51%), Gaps = 4/165 (2%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPAL---FLKTSLDHNTYIISRFILTSLPISLHFTRSLF 57
++S Q + L++ ++ ++ + +KT +D + + +S+ + S + + + S+F
Sbjct: 19 LLSPQCQKLVEDLRSCRDIFEVSRIHGYMVKTGIDKDDFSVSKLLAFSSVLDIRYASSIF 78
Query: 58 NNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+V L+ +NT+IR Y+ + + ++F+++ G+ D ++ +K+ + L
Sbjct: 79 EHVSNTNLYMFNTMIRGYSISDEPERAFRVFNQLRAKGITLDRFSFITTLKSCSRDLCSS 138
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G +H + + G + N LL+ Y C I+ A+ +FDEMP
Sbjct: 139 IGEGLHGIALRSGFMVFTDLRNALLQFYCVCGRINDARKVFDEMP 183
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 53 TRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + + +N +I YAK E + L +M ++P++ T+ ++ +
Sbjct: 277 ARRIFDCAIRKDVVTWNCMIDQYAKMGILEECVWLLRQMKYERMKPNSSTFVGLLSSCAN 336
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VG SV L+ + + D +G L+ MYA +D A +F+ M +
Sbjct: 337 SEAAFVGRSVADLVEEERIALDAKLGTALVDMYAKLGMLDKAVEIFNRMKD 387
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKT 77
QL A L+ L+ + Y+ + + L + + R++F+ + P L A++ +I Y++
Sbjct: 147 QLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMINGYSRV 206
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E++ LF EM G+ PD +T V+ A + + +G VH+ I + G+ D +
Sbjct: 207 GMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELS 266
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA C I+ A+ +FD M E
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVE 291
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIK-LFDEMLKTGL-RPDNLTYPFVVKASD 110
R+LF+ + P F YN+LIRA + ++ ML+ G RP+ T F +KA
Sbjct: 78 RTLFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACA 137
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G G +H+ + GL + Y+ LL +YA C+++ A+ +FD M
Sbjct: 138 AVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGM 187
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N +I YA+T E+++LF EM+KT +RPD T V+ A Q
Sbjct: 151 AQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQ 210
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ +G VHS I G S+ I N L+ +Y+ C +++ A LF+
Sbjct: 211 SRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 55 SLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
S+F + P +NT++R YA +S + ++KL+ M+ GL P++ T+PF++K+ +
Sbjct: 21 SVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSK 80
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G +H + K+G D Y+ +L+ MYA ++ A +FD
Sbjct: 81 AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFD 125
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 264 VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHV 323
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K + + + +L+ MYA C +I+ A +F+ M
Sbjct: 324 YIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM 362
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P ++ +N++IR + S+ L+ ++++ G PD+ T+PFV+KA G +
Sbjct: 56 PSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKCI 115
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H I K G +D Y LL MY +C ++ +FD +P
Sbjct: 116 HCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIP 155
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S R LFN MP + ++N++I AY + E++ LF +M +G+ PD T+ V+
Sbjct: 251 SFKIARDLFNK-MPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVL 309
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +VH+ + K G+ +D + LL MYA + A+ +F + +
Sbjct: 310 SVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQK 365
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+N+ + + A+ LI Y + E++K+F +M G+ P+ +T + +
Sbjct: 150 VFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRD 209
Query: 115 IGVGGSVHSLIFKVGL-------HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH I K G +S+ + +L MYA C A+ LF++MP+
Sbjct: 210 FDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQ 264
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R +F+ + P + +N +IR YA + +SI L+ ML+ G+ P N T+PF++KA
Sbjct: 57 IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H+ +GL D Y+ LL MYA C + A+ LF+ +
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSI 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 50 LHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVK 107
L + R +FN V ++ +I Y +++ L+D+ML GL P T +++
Sbjct: 261 LFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLR 320
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A Q + G +H + K G+ D +GN+L+ MYA C +D A DEM
Sbjct: 321 ACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM 373
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+R +F+ + + ++NT+I Y +E++ LF E+ GL+PD++T V+ A
Sbjct: 467 SREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSH 526
Query: 112 CLLIGVGG---SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ G S S F + YI ++ + A +D A MP
Sbjct: 527 SGLVTEGKYWFSSMSQNFNIKPRMAHYI--CMVDLLARAGNLDEAYTFIQRMP 577
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+Y+ +I + + +++ +F +M +G+ P T ++ A + G H
Sbjct: 380 SYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYT 439
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +D I N ++ MY+ C +I ++ +FD M
Sbjct: 440 VVRGFTNDTSICNAIIDMYSKCGKITISREIFDRM 474
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 50 LHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
L+ ++LFN++ + A+N +I A++ + ++I +M + G+ P++ T ++
Sbjct: 158 LYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSIL 217
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
Q + G ++H+ + + + LL MYA C + +A+ +F+
Sbjct: 218 PTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFN 269
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFV 105
+LH + LF + P LF +N +IRA++ + ++ L+ +ML + + PD T+PF+
Sbjct: 27 ALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPPIFPDTFTFPFL 86
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+K+ + L +G VH+ +FK G S+ ++ N LL++Y + A +FDE P
Sbjct: 87 LKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESP 142
Score = 40.0 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNT+I + + S+++F EM + PD T+ ++ A G+G VH L+
Sbjct: 148 SYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLV 207
Query: 126 F-KVG-LHSDKYIGNTLLRMYAACKEIDFAK 154
+ K+G ++ + N L+ MYA C ++ A+
Sbjct: 208 YRKLGCFGENELLVNALVDMYAKCGCLEVAE 238
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +IR+Y E +K+F M +RPD+ T+P V+KA I +G +H K
Sbjct: 109 NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK 168
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VGL S ++GN L+ MY C + A+ + DEM
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y K + +E+++L+ M G PD ++ V+ A + +G +H
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + L + + N L+ MYA C ++ A+ +F+ M
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM 370
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+VHS I L + +G L+R YA+ K++ A+ +FDE+PE
Sbjct: 60 TVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPE 102
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 56/97 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YNT++ AYAK+ S E+ +LF+E+ G + T+ ++ + IG G +HS
Sbjct: 316 LVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHS 375
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G S+ +I N L+ MY+ C I+ A +F+EM
Sbjct: 376 RILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM 412
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
F R +NVM ++ +I Y ++ C E+I+LF EM++ ++P++ T+ V+KA
Sbjct: 206 FDRMPVHNVM----SWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACA 261
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I +G V++L+ K+ L S +GN+L+ MY+ C ++ A+ FD + E
Sbjct: 262 NLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFE 313
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I + + S +++ LF +M+ +G PD T VV A + L+ +G H L+
Sbjct: 113 WTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVM 172
Query: 127 KVGLHSDKYIGNTLLRMYAAC---KEIDFAKALFDEMP 161
K GL D +G +L+ MYA C +D A+ +FD MP
Sbjct: 173 KSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP 210
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +++ LI YA + E+I F +ML+ G P+ + V +A I +G +
Sbjct: 7 LVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFG 66
Query: 124 LIFKVG-LHSDKYIGNTLLRMYAACK-EIDFAKALFDEMPE 162
+ K G SD +G L+ M+ +++ A +FD MP+
Sbjct: 67 FLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPD 107
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFN-----NVMPPL 64
I KT Q+ A + + L H+ +++S+ + + F F+ ++
Sbjct: 12 IHRCKTIRSLKQIHAHLIASGLLHDEFVLSK-VSEFFGKHIGFVDYAFDFLNQTDLHVGT 70
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
YNTLI AYA + + ++ ++ G PD T+P V+KA + L + G VH +
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G D Y+ N+LL Y+ C + A +FDEM
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEM 166
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ LI Y +T E+I LF LK + P+ T+ V+ A + + +G VH L+
Sbjct: 173 SWTGLISGYVRTGLFDEAINLF---LKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLV 229
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+K +GN L+ MY C+ + A+ LFDE+P+
Sbjct: 230 YKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPD 266
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ +P + ++ ++I + +S++LF +M +G+ PD + V+ A
Sbjct: 257 ARKLFDE-LPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACA 315
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G V I + G+ D +IG L+ MYA C I+ A +F+ +P
Sbjct: 316 SLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIP 366
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNN 59
+R I +L+Q + H++ A L HN I + F S+ SL + + +F+
Sbjct: 5 ARAILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHR 64
Query: 60 VMPPLF-AYNTLIRAYAKTSC--SIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLI 115
+ P A+N++IR ++++ +++I ++ ML RPD T+ F++KA ++
Sbjct: 65 IHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE 124
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G VH I + G D + L+R YA I+ A +F+EMP
Sbjct: 125 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMP 170
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L ++N++I Y +T E++K++D+M + + D T ++ + + +G
Sbjct: 169 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 228
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + L + ++GN L+ MYA C + A ++F+ MP+
Sbjct: 229 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPK 272
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I ++ S ++ K F ML+ G+ PDN TY V+ +G+G +H+
Sbjct: 550 MVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHA 609
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K L SD YI +TL+ MY+ C + ++ +F++ P
Sbjct: 610 QIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAP 647
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I + + +SI +F EM + G+ D + V+KA +G VH L+
Sbjct: 148 SWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLV 207
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G D G+ LL MYA CK +D + ++F E+PE
Sbjct: 208 VKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPE 244
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A + E++ F M+ + + PD+ TY V+KA + G +H+ I
Sbjct: 451 SWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRI 510
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
K G+ D ++G L+ MY C I+ A + D
Sbjct: 511 IKSGMGFDSFVGAALVDMYCKCGMIEKADKIHD 543
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 61 MP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L +YN +I YA++ +++K F +LKTGL D +T + A G
Sbjct: 343 MPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEG 402
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH L K S+ + N +L MY CK + A LFD M
Sbjct: 403 RQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMM 444
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ +I + ++E ++LF EM G+ Y + ++ + +G +HS
Sbjct: 249 SWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHA 308
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD +G L MYA C + A+ + MP+
Sbjct: 309 LKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPK 345
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFN-----NVMPPL 64
I KT Q+ A + + L H+ +++S+ + + F F+ ++
Sbjct: 12 IHRCKTIRSLKQIHAHLIASGLLHDEFVLSK-VSEFFGKHIGFVDYAFDFLNQTDLHVGT 70
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
YNTLI AYA + + ++ ++ G PD T+P V+KA + L + G VH +
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G D Y+ N+LL Y+ C + A +FDEM
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEM 166
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ LI Y +T E+I LF LK + P+ T+ V+ A + + +G VH L+
Sbjct: 173 SWTGLISGYVRTGLFDEAINLF---LKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLV 229
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+K +GN L+ MY C+ + A+ LFDE+P+
Sbjct: 230 YKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPD 266
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ +P + ++ ++I + +S++LF +M +G+ PD + V+ A
Sbjct: 257 ARKLFDE-LPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACA 315
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G V I + G+ D +IG L+ MYA C I+ A +F+ +P
Sbjct: 316 SLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIP 366
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ A K+ L + I + I L S + R L + P L +++ LI YA+
Sbjct: 77 QIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNG 136
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F EM G++ + T+ V+KA + +G VH ++ G D ++ N
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
TL+ MYA C E +K LFDE+PE
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPE 220
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N++P L A+N +I Y++ +E++ LF EM K G+ + T ++K++ ++
Sbjct: 391 NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVH 450
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
V VH L K G HSD Y+ N+L+ Y C ++ A+ +F+E
Sbjct: 451 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 493
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNN-VMPPLFAYNTLI 71
+ H Q+ L +K+ + Y+++ I + S + +F + L ++ ++I
Sbjct: 447 QVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 506
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
AYA+ E++KLF EM L+PD ++ A G +H I K G
Sbjct: 507 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 566
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D + GN+L+ MYA C ID A F E+ E
Sbjct: 567 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTE 597
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
++ LF+ + + ++N L Y + E++ LF EM+ +G++P+ + +V A
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H + K+G D + N L+ MYA ++ A ++F+++ +
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 321
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS------DQCL-LIG- 116
F+ N L+ YAK ++I +F+++ + PD +++ V+ +Q L L+G
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQ----PDIVSWNAVIAGCVLHEHHEQALELLGQ 349
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +HS + K+ + SD ++ L+ MY+ C ++ A+ F+ +PE
Sbjct: 350 MKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE 395
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L+ + LF +MP + ++ TLI +++T +I + EML+ GL+P+ T V+
Sbjct: 243 LNRAKQLFE-LMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLS 301
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G G +H I G+ D+ IG +LL MYA C E+D A +F M
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNM 354
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 44 TSLPISLHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+SL S ++ S+F N F +N LIR + + S++ F ML G++PD LT+
Sbjct: 70 SSLLKSPDYSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTF 129
Query: 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
PFV+K++ + +G ++H+ K + D ++ +L+ MYA +++ A +F+E P+
Sbjct: 130 PFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPD 189
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF + P + A+N +I +AK + E+I F E+ KTGL+ + V+ A
Sbjct: 263 RKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASL 322
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ G VH+ K GL + Y+G+ L+ MYA C ++D AK +F+ + E
Sbjct: 323 SMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE 372
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ +LF+ + P L + LI YA+ + ++++ + M + PD + V++A
Sbjct: 666 SETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACA 725
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +HSLIF G + D+ ++L+ MYA C ++ + +F EMP
Sbjct: 726 GMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMP 776
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + + E+ +F M+ G+ PD ++ +V A + G H L+
Sbjct: 478 SWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLL 537
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
KVGL + G++L+ MY C + A+ +F MP
Sbjct: 538 VKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP 573
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 28 KTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIK 85
K LD N Y+ S + S + + +FN++ + +N ++ +A+ + E ++
Sbjct: 337 KEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVME 396
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
F M + G +PD T+ + A + GG +H+++ K S+ ++ N L+ MYA
Sbjct: 397 FFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYA 456
Query: 146 ACKEIDFAKALFDEM 160
+ A+ F+ M
Sbjct: 457 KSGALKEARKQFELM 471
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+FA+N+++ Y ++ F M +RP+ T+ V+ A + G VH
Sbjct: 107 VFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHC 166
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+FK G + L+ MYA C+ + A+ +FD
Sbjct: 167 GVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFD 201
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFT-RSLFNNVMPP--LFAYNTLIRAYAK 76
Q L +K LD +T S I + + R +F + MP + + N LI Y
Sbjct: 531 QQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYS-MPSRNVVSVNALIAGYTM 589
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKY 135
E+I LF E+ GL+P +T+ ++ D ++ +G +H + K G L S +
Sbjct: 590 GHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEM 648
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ +LL +Y + ++ LF E+
Sbjct: 649 VCVSLLCLYMNSQRFVDSETLFSEL 673
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF + P + A+N +I +AK + E+I F E+ KTGL+ + V+ A
Sbjct: 263 RKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASL 322
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ G VH+ K GL + Y+G+ L+ MYA C ++D AK +F+ + E
Sbjct: 323 SMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE 372
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ +LF+ + P L + LI YA+ + ++++ + M + PD + V++A
Sbjct: 666 SETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACA 725
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +HSLIF G + D+ ++L+ MYA C ++ + +F EMP
Sbjct: 726 GMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMP 776
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + + E+ +F M+ G+ PD ++ +V A + G H L+
Sbjct: 478 SWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLL 537
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
KVGL + G++L+ MY C + A+ +F MP
Sbjct: 538 VKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP 573
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 28 KTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIK 85
K LD N Y+ S + S + + +FN++ + +N ++ +A+ + E ++
Sbjct: 337 KEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVME 396
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
F M + G +PD T+ + A + GG +H+++ K S+ ++ N L+ MYA
Sbjct: 397 FFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYA 456
Query: 146 ACKEIDFAKALFDEM 160
+ A+ F+ M
Sbjct: 457 KSGALKEARKQFELM 471
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+FA+N+++ Y ++ F M +RP+ T+ V+ A + G VH
Sbjct: 107 VFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHC 166
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+FK G + L+ MYA C+ + A+ +FD
Sbjct: 167 GVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFD 201
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFT-RSLFNNVMPP--LFAYNTLIRAYAK 76
Q L +K LD +T S I + + R +F + MP + + N LI Y
Sbjct: 531 QQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYS-MPSRNVVSVNALIAGYTM 589
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKY 135
E+I LF E+ GL+P +T+ ++ D ++ +G +H + K G L S +
Sbjct: 590 GHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEM 648
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ +LL +Y + ++ LF E+
Sbjct: 649 VCVSLLCLYMNSQRFVDSETLFSEL 673
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSL------DHNTYIISRFILTSLPISLHFTRSLFNN 59
++++IQ T H Q+ A L T T ++ L+ P L + + +
Sbjct: 4 MDSIIQKCTTLSHIKQVQAHLLTTGQFNLRISPSRTRLLEHCALSPSPAYLPYAAHIHRH 63
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P +N L+R A+ ++ L T L PD LT+ F + AS + L +
Sbjct: 64 IPHPSTNDFNALLRGLARGPHPTHALTF----LSTILHPDALTFSFSLIASARALALSET 119
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+HS + + G H+D +G TL+ YA C ++D A+ +FDE+P
Sbjct: 120 SQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIP 162
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N LI A+ S S E++ LF+ M G + + ++ + A Q + G VH+ +
Sbjct: 168 AWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACV 227
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+ L + + N ++ MYA C D +F M
Sbjct: 228 RKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTM 262
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 49 SLHFTRSLFNNVMP----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
L R +F+ MP + +N LIRAYA E+I L+ +ML G+ P+ T+PF
Sbjct: 66 ELKIARHVFDK-MPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPF 124
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+KA G +H I ++ L S+ Y+ L+ YA C +D AK +FD+M
Sbjct: 125 VLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM 180
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I Y + S E +++F EM +G+ P+ T V+ A + G H
Sbjct: 393 SFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYA 452
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +D I N L+ MYA C +ID A+ +FD M
Sbjct: 453 IICGFTADTMICNALIDMYAKCGKIDTARKVFDRM 487
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+N++I ++ S + + ++ + P++ T V+ A Q + G +H
Sbjct: 185 VVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHG 244
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G D +G +L +Y C+ ID+A+ +FD M
Sbjct: 245 FCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMM 281
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 50 LHFTRSLFN--NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-----NLTY 102
+ + R +F+ ++ ++ ++ AY E+++LF ++L L+ D +T
Sbjct: 271 IDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLM--LKDDVIVLSAVTL 328
Query: 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V++ + G +H K G D +GNTLL MYA C I+ A F+EM
Sbjct: 329 ATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEM 386
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + + ++NT+I AY +E++ LFD M GL+PD++T+ ++ A
Sbjct: 480 ARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSH 539
Query: 112 CLLIGVG 118
L+ G
Sbjct: 540 SGLVAEG 546
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+N++ PL +N LI +Y + E++ + +M G+RPD TYP V+KA + L I
Sbjct: 154 SNILHPL-PWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAF 212
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ I L + ++ N+L+ MYA E+ A+ LF+ M E
Sbjct: 213 GKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLE 257
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N+++ Y S E+ LF EML +G+ P+ +T ++ + + G H
Sbjct: 396 IITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHC 455
Query: 124 LIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + G + N+L+ MYA ++ AK LFD +
Sbjct: 456 YILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSI 493
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
Y +LI Y E++KLFDEM K ++PD++T V+ A L+ G
Sbjct: 501 YTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEG 552
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNN 59
+R I +L+Q + H++ A L HN I + F S+ SL + + +F+
Sbjct: 23 ARAILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHR 82
Query: 60 VMPPLF-AYNTLIRAYAKTSC--SIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLI 115
+ P A+N++IR ++++ +++I ++ ML RPD T+ F++KA ++
Sbjct: 83 IHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE 142
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G VH I + G D + L+R YA I+ A +F+EMP
Sbjct: 143 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMP 188
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L ++N++I Y +T E++K++D+M + + D T ++ + + +G
Sbjct: 187 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 246
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + L + ++GN L+ MYA C + A ++F+ MP+
Sbjct: 247 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPK 290
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +IR+Y E +K+F M +RPD+ T+P V+KA I +G +H K
Sbjct: 109 NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK 168
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VGL S ++GN L+ MY C + A+ + DEM
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y K + +E+++L+ M G PD ++ V+ A + +G +H
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + L + + N L+ MYA C ++ A+ +F+ M
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM 370
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+VHS I L + +G L+R YA+ K++ A+ +FDE+PE
Sbjct: 60 TVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPE 102
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAY 67
++L K H L+T D + ++ + I S L +R +F+ + + ++
Sbjct: 142 VKLGKEVH------GFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSW 195
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
N++I Y++ + L+ EM+ +G RP+ +T V++A Q + G VH I
Sbjct: 196 NSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIV 255
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ D + N L+ +YA C +D+A+ LFDEM E
Sbjct: 256 DNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSE 291
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 32 DHNTY--IISRFILTS-LPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFD 88
D TY IIS +L + SL R + ++ +N +I + + + L
Sbjct: 293 DEVTYGAIISGLMLHGYVDQSLELFRGMKTQILS---TWNAVITGLVQNNRHEGVLDLVR 349
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
EM G RP+ +T V+ + G +HS K+G H + Y+ ++ MYA
Sbjct: 350 EMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSG 409
Query: 149 EIDFAKALFDE 159
+ A+ +FD+
Sbjct: 410 YLRGAQRVFDQ 420
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L + +I AYA + ++ LF EMLK G++PD +T+ V+ A C ++ +
Sbjct: 426 LVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFE 485
Query: 124 LIFKVGLHSDKYIGNTLLRMYAA-------CKEIDFAKALFDEMP 161
+FK KY L+ YA + + AK +MP
Sbjct: 486 SMFK------KYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMP 524
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
QL A LK++L + +++ + I SL + + FN V P + YNT+IRA++ S
Sbjct: 64 QLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNS 123
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F M + G DN T+PF++K + + V SVH+ I K G SD ++ N
Sbjct: 124 QPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPN 183
Query: 139 TLLRMYAACKE--IDFAKALFDEM 160
+L+ Y+ C I AK LF M
Sbjct: 184 SLIDSYSKCGSCGISAAKKLFVSM 207
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ + + L ++ ++ +A+ + E+I LFD+M K L+ DN T ++ A
Sbjct: 291 MEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAA 350
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ L+G+G +H+ I I N L+ MYA C ID F M
Sbjct: 351 CAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGLIDDGIRYFSTM 402
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A KT L + + + +L ++ +LH+ LF++ P F +NTLIR+ +
Sbjct: 20 QIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLSL 79
Query: 77 TSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ + S+ F ++ + L PD+ T+ F +KA + G +HS F+ G + +
Sbjct: 80 SQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIF 139
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+G TL+ MYA C + A+ +FDEM E
Sbjct: 140 VGTTLISMYAECGDSGSARRVFDEMSE 166
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I +A C E+ F E+L+ +R + ++ V+ A Q G +H +
Sbjct: 233 SWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFV 292
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K G + N L+ Y+ C + A+ +F MP
Sbjct: 293 EKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMP 328
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 53 TRSLFNN--VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F N V + ++ ++I A C E+I+LF EM ++G+RPD +T+ ++ A
Sbjct: 320 ARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACS 379
Query: 111 QCLLIGVG 118
L+ G
Sbjct: 380 HSGLVEEG 387
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI--SLHFTRSLFN 58
++ +I +L+ KT +H HQ+ + + L N YI + I+TS + + LF+
Sbjct: 64 LLEEKIISLLYSCKTLNHLHQIQSHIINHGLQFNDYITPK-IITSFALFKRMRHAHKLFD 122
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ P + +N +++ Y+ E I LF +M+ + P+ ++P V+K+S +
Sbjct: 123 QIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFKE 182
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H + K G ++ ++G L+ +Y++ + I A +F EM E
Sbjct: 183 GEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIE 227
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++N LI YA C +E + F ML G+ P++ T V+ A + + +G VH
Sbjct: 323 VFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSACARLGALDLGKWVH 382
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G + YIGN L+ MYA C ++ A +F + +
Sbjct: 383 MYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDK 422
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIIS--RFILTSLPISLHFTRSLFNNV-MPPLFAYNTL 70
K H H L L DH+ + RF S L + + LF+ + P F YNTL
Sbjct: 12 KQIHAHSLLAGLH-----DHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTL 66
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL--------LIGVGGSVH 122
IR YAK+S S+ L ++M + G+ PD T+ F++KA + L+ +H
Sbjct: 67 IRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIH 126
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ K+G S ++ N L+ +YAA A +FDE
Sbjct: 127 GAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDE 163
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP + ++ T++ AY++ S E+++L+ ML G+RPD +T V+
Sbjct: 185 LERARWVFDQ-MPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVIS 243
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G SVHS I + G + N L+ MYA C +D A +F+ M
Sbjct: 244 ACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSM 296
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
QL A LK++L + +++ + I SL + + FN V P + YNT+IRA++ S
Sbjct: 38 QLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNS 97
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++ F M + G DN T+PF++K + + V SVH+ I K G SD ++ N
Sbjct: 98 QPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPN 157
Query: 139 TLLRMYAACKE--IDFAKALFDEM 160
+L+ Y+ C I AK LF M
Sbjct: 158 SLIDSYSKCGSCGISAAKKLFVSM 181
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ + + L ++ ++ +A+ + E+I LFD+M K L+ DN T ++ A
Sbjct: 265 MEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAA 324
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ L+G+G +H+ I I N L+ MYA C ++ A +F+++
Sbjct: 325 CAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDI 376
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 24 ALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSI 81
A+ +KT+ + + Y++++FI L++ + + +P +F YN +I+ + ++ +
Sbjct: 3 AVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPV 62
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
++++L+ +ML+ + P + T+P ++KA + +VH +++ G S ++ +L+
Sbjct: 63 QALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLV 122
Query: 142 RMYAACKEIDFAKALFDEMPE 162
Y++ I+ + +FDEMPE
Sbjct: 123 DFYSSMGRIEESVRVFDEMPE 143
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 56 LFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
LFN MP + ++ T+I Y++ E++ +F+EM K G+ PD +T V+ A
Sbjct: 199 LFNQ-MPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLG 257
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H I + G + D YIG+ L+ MYA C +D + +F ++ E
Sbjct: 258 ALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLRE 306
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 51 HFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
H R+ F++ +F +L+ Y+ ES+++FDEM P+ + + S
Sbjct: 105 HVWRNGFDS---HVFVQTSLVDFYSSMGRIEESVRVFDEM------PERDVFAWTTMVSG 155
Query: 111 QCLLIGVGG-SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ VG S +F + + NTL+ YA +E+D A+ LF++MP
Sbjct: 156 ---LVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMP 204
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPPLFA-YNTLIRAYAKTS 78
Q+ +K+ ++ N ++++ + + L R +F+ ++ A +N +I Y +
Sbjct: 49 QVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHK 108
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+ ++++LF EM G++P+ TY ++KA + G VH+ I GL SD +G
Sbjct: 109 HAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGT 168
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
LLRMY C I+ A+ +FD +
Sbjct: 169 ALLRMYGKCGSINEARRIFDNL 190
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S++ R +F+N+M + ++ +I AYA++ E+ +L +M + G +P+ +TY ++
Sbjct: 179 SINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILN 238
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + VH GL D +G L++MYA ID A+ +FD M
Sbjct: 239 ACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRM 291
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A+A+ E+ LF +M G +PD + + ++ A + +H
Sbjct: 298 SWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHA 357
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
GL D +G L+ MY+ ID A+ +FD M
Sbjct: 358 LDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRM 392
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F+R NV+ A+N +I +AK +E+I+ F M K G++ T V+ A
Sbjct: 284 FSRMPNRNVV----AWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIAS 339
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G VH+ K GLHS+ Y+G++L+ MYA C +++ AK +FD + E
Sbjct: 340 LAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNE 390
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRS--LFNNVMPPLFA--YNTLIRAYAK 76
Q+ +L LK L + + +L SL T + LF+ P A + +I ++
Sbjct: 650 QIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQ 709
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
CS+ +++L+ EM + PD T+ ++A I G HSLIF G SD+
Sbjct: 710 NDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELT 769
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
+ L+ MYA C ++ + +F EM
Sbjct: 770 SSALVDMYAKCGDVKSSMQVFKEM 793
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLF------NNVMPPLFAYNTLIR 72
HQL ++ +K N ++ + + + + +L R F +NV ++N +I
Sbjct: 448 HQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNV-----SWNVIIV 502
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
Y + +E+ LF M G+ PD ++ ++ A + G VH L K G +
Sbjct: 503 GYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQET 562
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Y G++L+ MYA C ID A + MPE
Sbjct: 563 KLYSGSSLIDMYAKCGAIDSAHKILACMPE 592
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESI 84
LK L N Y+ S + + + + + +F+ + + +N ++ Y + + E +
Sbjct: 354 LKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVM 413
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+LF M G PD+ TY ++ A + +G +HS+I K S+ ++GN L+ MY
Sbjct: 414 ELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMY 473
Query: 145 AACKEIDFAKALFD 158
A ++ A+ F+
Sbjct: 474 AKSGALEDARQQFE 487
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+ N LI YA+ + +++ LF +ML G+ +T+ ++ A + + +G +HSLI
Sbjct: 597 SMNALIAGYAQINLE-QAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLI 655
Query: 126 FKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDE 159
K+GL D+++G +LL MY A LF E
Sbjct: 656 LKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSE 690
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 49/95 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+N+++ ++K +K F + +G+ P+ T+ V+ + + ++ G VH
Sbjct: 125 ILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHC 184
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ K+G S Y L+ MYA C + A+++FD
Sbjct: 185 NVVKMGFESISYCEGALIGMYAKCNFLTDARSIFD 219
Score = 35.4 bits (80), Expect = 8.4, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ K+G S +GN ++ +YA C ++D+A+ F ++ +
Sbjct: 81 IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLED 122
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLP---ISLHFTRSLFNNVMPPLFAYNTLIRA 73
H QL A +K+ L + SR + + P +S + R + ++ P F +NT+IRA
Sbjct: 48 HLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVS-YAERLVRHHPRPNSFMWNTVIRA 106
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ + ++ LF +ML + P+ T P ++ A + G G ++H + K+GL D
Sbjct: 107 LSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKLGLAGD 166
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Y+ N + MYA+C D A ALF + PE
Sbjct: 167 AYVRNATIAMYASCARADEALALFGQCPE 195
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R++F+ MP + ++ ++ AYA+ + E++ LF M G+ P+ V+
Sbjct: 218 RAVFDG-MPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCAS 276
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G VH+ I + G+ + + L+ MY C +D A+ +FD
Sbjct: 277 LGALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFD 323
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 43 LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLF-DEMLKTGLRPDNL 100
L S P S+ SLF + P F NT++R Y + ++ + ++M++ + P++
Sbjct: 101 LCSFPDSVQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHY 160
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
T+P +VK + IG G +H+ I K G D ++ N+L+ MY+ C I A+A+F+
Sbjct: 161 TFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFE 218
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 59 NVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N MP + ++N ++ Y + E +++FD+M+ + P+ T V+ A +
Sbjct: 311 NWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLD 369
Query: 117 VGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +HS I + D + LL MYA C +D A+ +FD+M
Sbjct: 370 RGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKM 414
>gi|449523047|ref|XP_004168536.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 502
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFA-----YNTLIRAYA 75
Q+ AL L TS+ N +I S F+ + + SL + + P F +N +IR YA
Sbjct: 23 QIHALLLTTSIHQNIHISSSFLRRTTEFRIMDYASLVFSHLSPSFKTEIQFWNAMIRGYA 82
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ +S+ L+ ++L+ GL+P + TYPFV+K+ G VH I K G +
Sbjct: 83 FNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTGFSLNSS 142
Query: 136 IGNTLLRMY-----------AACKEIDFAKALFDEM 160
+ + L +Y AA A+ +FDEM
Sbjct: 143 VSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEM 178
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
T +F N MP + ++N++I +Y + E++ LF++ML G+ PD T+ V A
Sbjct: 263 TARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACS 322
Query: 111 QCLLIGVGGS---VHSLIFKVGLHSDKYIGNTLLRMYAACKE---IDFAKALFDEMPE 162
L G + SL+ K GL + + T L AC ++ + +FD M +
Sbjct: 323 SLALHGQAQDALKLFSLMQKQGLKPNDF---TFLGALFACSHGGMVEEGRTIFDMMEK 377
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 8/132 (6%)
Query: 34 NTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIE-SIKLFDE 89
N +++S+ I L + P ++ LF+++ P +A+N +IRA T + ++ LF
Sbjct: 57 NNHLLSKAIHLKNFP----YSSLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHR 112
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M+ L PDN T+PF + + + HSL+FK+ LHSD + ++L+ YA C
Sbjct: 113 MMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGL 172
Query: 150 IDFAKALFDEMP 161
+ A+ +FDE+P
Sbjct: 173 VASARKVFDEIP 184
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N++I YAK C+ E++++F EM + G PD ++ ++ A + + +G V
Sbjct: 190 SWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGF 249
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + G+ + YIG+ L+ MYA C E++ A+ +FD M
Sbjct: 250 VVERGMTLNSYIGSALISMYAKCGELESARRIFDGM 285
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 34 NTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEML 91
N+YI S I + + L R +F+ + + +N +I YA+ + E+I LF M
Sbjct: 258 NSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMK 317
Query: 92 KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
+ + + +T V+ A + +G + + G D ++ L+ MYA +D
Sbjct: 318 EDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLD 377
Query: 152 FAKALFDEMPE 162
A+ +F +MP+
Sbjct: 378 NAQRVFKDMPQ 388
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ ++ + ++N +I Y +T E+++L+ EM+KT ++PD T VV A Q
Sbjct: 158 ARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQ 217
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I +G VHSLI G S+ + N L+ MY+ C E++ A LF
Sbjct: 218 SSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLF 263
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 33 HNT-YIISRFILTSLPISLHFTR-----SLFNNVMPP-LFAYNTLIRAYAKTSCSIESIK 85
HNT Y +S+ +L +S HF S+F + P L +NT+ R +A S S+ ++K
Sbjct: 1 HNTNYALSQ-LLEFCVLSPHFDGLPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALK 59
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
L+ M+ GL P++ ++PF++K+ + G +H + K+G D Y+ +L+ MYA
Sbjct: 60 LYVCMISLGLLPNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYA 119
Query: 146 ACKEIDFAKALFDE 159
++ A +FD
Sbjct: 120 QNGRLEDAHKVFDR 133
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NTLI + + E++ LF EML++G P+++T V+ A I +G +H I
Sbjct: 273 SWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYI 332
Query: 126 FK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G+ + + +L+ MYA C +I+ A +FD M
Sbjct: 333 DKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSM 369
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVM-PPLFAY 67
+ + K H H L+ + N YII+ + + S++ R LF+ + ++
Sbjct: 60 LAVGKQVHEH------ILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSW 113
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +I YA E+ LF M + GL PD T+ ++ A + G VH + +
Sbjct: 114 NVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVME 173
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
GL ++ +GN L+ MYA C + A+ +FD M
Sbjct: 174 AGLANNATVGNALISMYAKCGSVRDARRVFDAM 206
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ TL AYA++ + ES+K + ML+ G+RP +TY V+ A + G +H+ I
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ HSD + L +MY C + A+ +F+ +P
Sbjct: 273 VESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+NT+I + E+ +F MLK + PD +TY ++ A + + G +H+
Sbjct: 312 VIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHA 371
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL SD GN L+ MY+ + A+ +FD MP+
Sbjct: 372 RAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPK 410
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ R +F+ MP + ++ L+ YA +ES F +ML+ G+ + +TY V+
Sbjct: 397 SMKDARQVFDR-MPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVL 455
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
KA + + G +H+ + K G+ +D + N L+ MY C ++ A
Sbjct: 456 KACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDA 502
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
VKA D + VG VH I + G+ + YI NTLL++Y C ++ A+ LFD+
Sbjct: 55 VKAKD----LAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDK 104
>gi|255558236|ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540637|gb|EEF42200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 327
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Query: 36 YIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKT- 93
Y + I+ P ++ ++ + + P +FA N++IRA++K S +S F+ ++ +
Sbjct: 18 YKLRASIVLKNPKNVDYSNQILDQCNDPTVFALNSMIRAHSKGSKPQKSFYFFNRIIHSH 77
Query: 94 -GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
G+ PDN T+ F+++A Q L +G +VH + K G D ++ + L+ MYA + F
Sbjct: 78 NGISPDNYTFNFLIRACAQLLAKEIGLAVHGCVIKYGFGLDPHVQSGLIFMYAELGCLGF 137
Query: 153 AKALFDEMPE 162
+ +FD +P+
Sbjct: 138 CRQVFDLIPQ 147
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L+ R +F + +YN LI Y++T+ ES++LF EM G++ D ++Y V+ A
Sbjct: 362 LNLARRVFKISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISAC 421
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G VH L + LH+ +I N LL Y C ID A +F ++P
Sbjct: 422 ANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIP 473
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
G+R D+ T+PFV+KA L + G +H ++FK+G SD ++GNTLL Y C +
Sbjct: 2 GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61
Query: 154 KALFDEMPE 162
K +FDEM E
Sbjct: 62 KRVFDEMLE 70
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQC--LLIGVGG-SV 121
++N++I ++ E+I LF EM L++G RP+ ++ +V C L GV G +
Sbjct: 75 SWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVS---IVSVLPVCAGLEDGVTGRQI 131
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H + K GL S +GN L+ +Y C + ++ +FDE+ E
Sbjct: 132 HCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISE 172
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 52/97 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I + A + +++++F M+ G++P+++T+ ++ + L G +H
Sbjct: 177 SWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFS 236
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL SD ++ N L+ MYA A +F+++ E
Sbjct: 237 LRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGE 273
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 48/94 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N ++ +A+ + ++ L +M G P+++T+ V+ A + + G +H+
Sbjct: 276 IVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHA 335
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ G D ++ N L MYA C ++ A+ +F
Sbjct: 336 RAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF 369
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L A+N++I +A+ E++ L+ EM G++PD T ++ A + + +G
Sbjct: 49 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 108
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH + KVGL + + N LL +YA C ++ AK LFDEM
Sbjct: 109 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 150
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G ++HS++ + G S Y+ N+LL +YA C ++ A +FD+MPE
Sbjct: 4 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE 51
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMP 62
+L+ KT + A +KT L + Y +S+ +L +S HF S+F+ +
Sbjct: 7 SLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSK-LLEXCVLSPHFDGLPYAISVFDTIQE 65
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L +NT+ R +A +S + ++KL+ M+ GL P++ T+PF++K+ + G +
Sbjct: 66 PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQL 125
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
H + K G D YI +L+ MY ++ A+ + D+
Sbjct: 126 HGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDK 163
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+ + + + ++N I YA+T E+++LF +M+KT +RPD T V+ A Q
Sbjct: 191 MFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGS 250
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I +G VHS I G + I N L+ +Y+ C E++ A LF
Sbjct: 251 IELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLF 293
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF +ML++G +P+++T ++ A I +G +H
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHV 360
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ A+ +FD M
Sbjct: 361 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM 399
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS---LHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
Q+ +K+ ++ + Y+ ++ L S+ I L TR +F+ ++ +F + +I YA+
Sbjct: 26 QVHECIIKSEMEQHPYVANK--LMSIYIRCGRLQNTREVFDTLVEKNVFNWTIMIGGYAE 83
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ ++I+++++M + G++P+ +T+ ++KA + + G +H I G SD +
Sbjct: 84 NNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLRL 143
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
GN L+ MYA C +D A+ +F+ M
Sbjct: 144 GNALIHMYARCGSMDDARLVFNGM 167
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG---S 120
+ +N++I A+ C +E+ LF +M + GL PD +TY ++ ++ C G
Sbjct: 273 IITWNSMIGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNIL--NNACASTGALQWVRK 330
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH KVGL D +GN L+ MYA C +D A+ +F M
Sbjct: 331 VHDDAAKVGLDFDVRVGNALVHMYAKCGSMDDARRVFYGM 370
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +FN ++ + +N +I + E+ LF +M + G PD TY ++
Sbjct: 156 SMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLN 215
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A+ +G VHS + GL SD +G L+ MYA I A+ +FD+M E
Sbjct: 216 ANACTGALGWVKEVHSHALRAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTE 270
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I A+ E+ F EM + G PD T ++ A + VHS
Sbjct: 476 IISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACASTRALDRVKEVHS 535
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL SD +G+ L+ YA C ID A+ +F+ M
Sbjct: 536 HALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGM 572
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 48/109 (44%)
Query: 54 RSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
R + V + ++ +I A+ E+ LF +M + G P+ TY ++
Sbjct: 365 RVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTG 424
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VH+ L S +GN L+ MYA C I+ A+ +FD M +
Sbjct: 425 ALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENARLVFDRMED 473
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N +I A+ E+ LF +M G PD +TY ++ + + VH
Sbjct: 577 IITWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSILGGNVSIEALEWVKEVHR 636
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ G +D + + L+ MY C +ID AK F
Sbjct: 637 HAVRAGFDTDPRVSSALVHMYTKCGDIDNAKLHF 670
>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 908
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 57 FNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
F + MP ++NT+I Y K I S+KLF +ML+ G PD T+ V+ A +
Sbjct: 359 FFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPM 418
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G+G +H L+ K D I N L+ MY+ C ++ A+A+F +M
Sbjct: 419 LGLGAQIHQLVEK-SFVPDTAISNALITMYSRCGALNDAEAIFKQM 463
>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
Length = 695
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 57 FNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
F + MP ++NT+I Y K I S+KLF +ML+ G PD T+ V+ A +
Sbjct: 323 FFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPM 382
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G+G +H L+ K D I N L+ MY+ C ++ A+A+F +M
Sbjct: 383 LGLGAQIHQLVEK-SFVPDTAISNALITMYSRCGALNDAEAIFKQM 427
>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
Length = 769
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 57 FNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
F + MP ++NT+I Y K I S+KLF +ML+ G PD T+ V+ A +
Sbjct: 171 FFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPM 230
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G+G +H L+ K D I N L+ MY+ C ++ A+A+F +M
Sbjct: 231 LGLGAQIHQLVEK-SFVPDTAISNALITMYSRCGALNDAEAIFKQM 275
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 40/180 (22%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLF---NNVMPPLFAYNTLIRAYA 75
Q+ A +KT L +T SR + + P ++ +F N+ P F +NT+IR ++
Sbjct: 43 QIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNP--FVWNTIIRGFS 100
Query: 76 KTSCSIESIKLFDEML--KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
++S +I +F +ML ++P LTYP V KA L G +H + K GL D
Sbjct: 101 RSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDD 160
Query: 134 KYIGNTLLRMY-------------------------------AACKEIDFAKALFDEMPE 162
+I NT+L MY A C ID A+ LFDEMP+
Sbjct: 161 SFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQ 220
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N++I A C ++ LF E+ +TGL PD++++ V+ A G VH
Sbjct: 324 LSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAH------SGEVHK 377
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEI-------DFAKALFDEMP 161
L +KY+ ++ Y + D A+AL +MP
Sbjct: 378 AGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMP 422
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H R++F+ + P + +NTL+ Y + ++I+LF M ++PD T ++ +
Sbjct: 74 VHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSS 133
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++ G VHS + LH+D ++ + L+ MY+ C +I A+++F++M E
Sbjct: 134 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTE 187
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ RS+FN + + +N++I S + E+ F +M + G+ P +Y ++ +
Sbjct: 175 IGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINS 234
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ I G +H+ + K G + Y+G+ L+ MYA C +D A+ FD M
Sbjct: 235 CSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 286
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYA 75
H Q+ A +K D N Y+ S I + + ++ R F+ +M + A+N +I YA
Sbjct: 243 HGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYA 302
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+ ++++LF+ ML T +PD +T+ V+ L+
Sbjct: 303 QNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLV 342
>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
Length = 667
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 35/131 (26%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFD-------------------------------EM 90
P + +YNT++ Y K E+IKLFD +M
Sbjct: 79 PSVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKM 138
Query: 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
+ +RPDN TY ++ D +G G VH+ I KV D +IG LLRMYA EI
Sbjct: 139 RCSSVRPDNFTYAIIIPCCD----LGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEI 194
Query: 151 DFAKALFDEMP 161
A+ +FD MP
Sbjct: 195 GDARKVFDGMP 205
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP L +N +I Y+K +SI LF ++ + G+ D TY V+
Sbjct: 198 RKVFDG-MPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAA 256
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VHSLI + G SD++ N L+ +Y+ C + A LF+E+P+
Sbjct: 257 RWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPD 307
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I + ++ E++ LF +M + P++ T+ ++ A G H L+
Sbjct: 312 SWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLV 371
Query: 126 FKVGL-HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL +D +G+ ++ MY+ C E+ A F EMPE
Sbjct: 372 LKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPE 409
>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1198
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 7 ETLIQLSKTAHHHHQLPAL---FLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVM 61
+T I L K H L AL L++ L N Y + + TSL H SLF+
Sbjct: 474 DTCISLIKNTSGLHSLKALHASMLRSYLHLNLYFFTNLVAQYTSLGFISH-AYSLFSTSN 532
Query: 62 P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F +N +IR + + ++I L+ +M++ ++P N T FV KA I G
Sbjct: 533 PTDAFLWNVMIRGFVDHAQYYDAILLYRQMVQLSIKPTNFTLTFVFKACGCLRDIEFGKQ 592
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH K G D ++ N+L+ MYA C + ++ +FD+M +
Sbjct: 593 VHDDAVKDGYKLDLFVLNSLITMYARCGSYELSRQVFDKMSD 634
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L RS+F+ ++ + + +I AY + ++S+ LF +M+ PD++T VV+A
Sbjct: 720 LDLARSIFDGILNKDIVTWANMIEAYTQVDLPLQSLVLFKQMMLQNACPDSVTLLSVVRA 779
Query: 109 SDQCLLIGVGGSVHSLIFKVG--LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +VH ++ G +S+ + + +YA C + +A+ +FD M
Sbjct: 780 CTILASLQHAHAVHGIVIVTGGFFNSELAVETAVTDLYAKCGSLTYARKVFDRM 833
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 34 NTYIISRFILTSLPI------SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKL 86
+ Y + F+L SL S +R +F+ + +N++I A T E +KL
Sbjct: 600 DGYKLDLFVLNSLITMYARCGSYELSRQVFDKMSDRNGICWNSMIGACLITERYDEGVKL 659
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLI-GVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
F +M G+R D V++ C+ G V + G + D+Y+ N + MYA
Sbjct: 660 FWQMSGEGIRLDRAALLNVMR----CVRTENDGNGVSRVARDAGFNLDQYVQNAAIGMYA 715
Query: 146 ACKEIDFAKALFD 158
C +D A+++FD
Sbjct: 716 KCGRLDLARSIFD 728
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 21 QLPALFLKTSLDHNTYIISRFI------LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAY 74
Q+ A ++T D N ++ S + + P F R N++ ++ LI Y
Sbjct: 293 QIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNII----SWTALIVGY 348
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ CS E++++F EM + G+ PD+ T V+ + + G H L GL
Sbjct: 349 GQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYI 408
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
+ N L+ +Y C I+ A LFDEM
Sbjct: 409 TVSNALVTLYGKCGSIEDAHRLFDEM 434
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+YN +I ++ +++L+ +L+ G +RP +T +V A+ +G H
Sbjct: 105 SYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHC 164
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I ++G + ++G+ L+ MYA I AK +FDEM
Sbjct: 165 QILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEM 201
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 43/94 (45%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ T++ + + +++ F M G+ D T+ ++ A + G +H+ I
Sbjct: 240 WTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYII 299
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++G+ L+ MY+ C+ I A+ F M
Sbjct: 300 RTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM 333
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPL 64
+++ +++ +H Q+ L L D +I +F S L++ +F+ + P
Sbjct: 27 LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVI-KFCAISKSGDLNYALEVFDKIPHPDA 85
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+ YNT+ R Y + + I ++ ML + P+ TYP +++A I G +H+
Sbjct: 86 YIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAH 145
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G +D + N L+ MY + ++ A+ +FD MP+
Sbjct: 146 VLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQ 183
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 53 TRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS- 109
R +F +MP ++N +I AY +++ E+ LFD M R +N+ V AS
Sbjct: 205 AREVFE-LMPERNSVSWNAMIAAYVQSNRLHEAFALFDRM-----RLENVVLDKFVAASM 258
Query: 110 -DQCLLIGV---GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
C +G G +H I K G+ D + T++ MY C ++ A +F+E+P+
Sbjct: 259 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ 315
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLI 71
++ ++ A LK+ + N Y+ + + + + SL R +F+ + + ++ +I
Sbjct: 110 RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMI 169
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
A+ + ++E+ K ++ M G +PD +T+ ++ A L+ VG VH I K GL
Sbjct: 170 EAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE 229
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +L+ MYA C +I A+ +FD++PE
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPE 260
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF + +P + + ++ YA+ E+I LF M + G++PD +T+ + +
Sbjct: 353 RKLFGD-LPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSS 411
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G S+H + G D Y+ + L+ MYA C +D A+ +F++M E
Sbjct: 412 PAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSE 462
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 48/95 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ LI YA+ +++L ++M + + P+ +TY +++ L + G VH I
Sbjct: 266 WTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYII 325
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G + ++ N L+ MY C + A+ LF ++P
Sbjct: 326 QSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E++ + + M+ G R + + +++ + + G VH+ I K G+ ++Y+ NTLL
Sbjct: 79 EALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 138
Query: 142 RMYAACKEIDFAKALFD 158
MYA C + A+ +FD
Sbjct: 139 SMYAKCGSLTDARRVFD 155
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ ++ + AYN +I YA + E++KLFD + + GL+PD +TY ++
Sbjct: 479 SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 538
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +H+L+ K G SD +GN L+ YA C A +F++M
Sbjct: 539 ACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM 591
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ V + ++ +I AK+ E++ ++ EM + G+ P+ +TY ++
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G +H + + GL +D ++GNTL+ MY+ C + A+ +FD M
Sbjct: 438 ACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+NT+I A+ E+ +++++M + G+ P+ +TY ++ A + G +HS
Sbjct: 293 LIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHS 352
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K G SD + N L+ MY+ C I A+ +FD+M
Sbjct: 353 RVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM 389
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ + + ++ I YA S + ++F +M + G+ P+ +TY V+
Sbjct: 176 SIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLN 235
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G +VHS I G SD +G L++MYA C + +F+++
Sbjct: 236 AFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ Y + +++KL +M + GL PD T + + + G +H
Sbjct: 93 SWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQA 152
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL D + N +L MYA C I+ A+ +FD+M
Sbjct: 153 MQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKM 187
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 52 FTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKAS 109
+R +F++V P + +N++IR Y + E++ F M + G+ PD ++ F +KA
Sbjct: 51 LSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKAC 110
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H LI ++GL SD YIG L+ MY +++ A+ +FD+M
Sbjct: 111 AGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKM 161
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 53/95 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ Y + E++ F +M +P+ +T+ +V+A+ + + VG SVHS +
Sbjct: 571 SWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSL 630
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G S +GN+L+ MYA C I+ ++ F E+
Sbjct: 631 IQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEI 665
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L LF N+ + +++ +I +Y + E+I LF +M++ ++P+ +T V++
Sbjct: 351 LEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQG 410
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G S+H K + S+ ++ MYA C A F+ +P
Sbjct: 411 CAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLP 463
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N L + Y + + ++ ++ M G+ PD+ T +++ C G V+ I
Sbjct: 469 AFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQI 528
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
K G S+ ++ + L+ M+ C + A LFD+
Sbjct: 529 IKHGFDSECHVAHALINMFTKCDALAAAIVLFDK 562
Score = 39.3 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T++ AYA E ++LFD M +R + + ++A+ + G ++H
Sbjct: 267 SWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYA 326
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ GL D + +L+ MY+ C E++ A+ LF
Sbjct: 327 VQQGLIGDVSVATSLMSMYSKCGELEIAEQLF 358
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + + + +NT++ A+ CS ++ LF +M + D+++ ++ A +
Sbjct: 155 RQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKL 214
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V +H L+ K G + L+ MY C ++ A+++F+E+
Sbjct: 215 EKSDVCRCLHGLVIKKGFIF--AFSSGLIDMYCNCADLYAAESVFEEV 260
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKAS 109
+R + ++V P + +N++IR Y + E++++F M + G+ PD T+ F +KA
Sbjct: 51 LSRKIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFALKAC 110
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G +H LI ++G SD YIG L+ MY ++ A+ +FD+MP
Sbjct: 111 AGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMP 162
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ Y + E+I F +M +P+ +T+ +V+A+ + + +G SVHS +
Sbjct: 571 SWNIMMNGYLLHGQAEEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSL 630
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G S +GN+L+ MYA C I+ +K F E+
Sbjct: 631 IQFGFCSHTPVGNSLVDMYAKCGMIESSKKCFIEI 665
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 27 LKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESI 84
+++ L+ T +IS + L P F R + + A+N L + Y + + ++
Sbjct: 432 VESELETATAVISMYAKCGLFSPTLKAFERLPIKDAI----AFNALAQGYTQIGDASKAF 487
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
++ M G+ PD+ T +++ C G V+ I K G S+ ++ + L+ M+
Sbjct: 488 DVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFDSECHVAHALIDMF 547
Query: 145 AACKEIDFAKALFDE 159
C + AK+LFD+
Sbjct: 548 TKCDALAAAKSLFDK 562
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP + +NT++ A+ CS E+++LF +M + + D+++ ++ A +
Sbjct: 155 RQVFDK-MPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSK 213
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V +H L+ K G S + L+ MY C ++ A+ +F+E+
Sbjct: 214 LEKNDVCRCLHGLVIKKGFTS--AFSSGLIDMYCKCADLYAAECVFEEV 260
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T++ AYA E ++LFD M +R + + ++A+ + G ++H
Sbjct: 267 SWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYT 326
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ G+ SD + +L+ MY+ C E++ A+ LF
Sbjct: 327 VQQGMMSDISVATSLINMYSKCGELELAEQLF 358
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 45/96 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++ +I ++ + E++ LF +M++T +P+ +T V++ +G S+H
Sbjct: 368 SWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYA 427
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K + S+ ++ MYA C F+ +P
Sbjct: 428 IKADVESELETATAVISMYAKCGLFSPTLKAFERLP 463
>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 682
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFN---NVMPPLFAYNTLIRAYAKT 77
Q+ A + + +++++ ++ + + +LH N +++ PL +N LI +YAK
Sbjct: 65 QIHAHCVSSGVEYHSALVPKLVTFYSAFNLHREAQSINENSDILHPL-PWNVLIASYAKN 123
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E + + M+ G+RPD TYP V+KA + L + G VH I Y+
Sbjct: 124 ELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVC 183
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N L+ MY + A+ LFD M E
Sbjct: 184 NALISMYKRFGNVGIARRLFDHMSE 208
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
Y +LI Y ++ LFDEM+++G++PD +T V+ A L+ G
Sbjct: 452 YTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVTMVAVLSACSHSKLVHEG 503
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N++I YA+ + S E+ L EML G +P+ +T ++ + + G H
Sbjct: 347 LCTWNSIISGYAQVNKSEEASYLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHC 406
Query: 124 LIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + D + N+L+ +YA +I AK + + M E
Sbjct: 407 YILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSNLMSE 446
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 27 LKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIES 83
LK D + +++ FI + S+++ + LF+ MP L ++N ++ YA+ +
Sbjct: 179 LKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDE-MPVKGLISWNAMVSGYAQNGLATNV 237
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV---GLHSDKYIGNTL 140
++L+ M G+ PD +T +V C +G H + FK+ G S+ ++ N L
Sbjct: 238 LELYRNMDMNGVHPDPVT---LVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNAL 294
Query: 141 LRMYAACKEIDFAKALFDEMPE 162
+ MYA C + A+A+FD MPE
Sbjct: 295 INMYARCGNLTKAQAVFDGMPE 316
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPPL----------FAYNTLIRAYAKTSCSIESIKL 86
+ F+ T L IS++ SL +N YN L+ Y S E++ L
Sbjct: 81 VFEPFVQTGL-ISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLL 139
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
F +M + G+ +++T ++ A + + +G S+H K G SD + N + MY
Sbjct: 140 FRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMK 199
Query: 147 CKEIDFAKALFDEMP 161
C +++A+ LFDEMP
Sbjct: 200 CGSVNYAQKLFDEMP 214
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT +R AK ++++ L+ +ML+ G RP+ T+PF +K+ L +G H I
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
KVG + ++ L+ MY +D A+ +F+E
Sbjct: 77 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEE 109
>gi|302801784|ref|XP_002982648.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
gi|300149747|gb|EFJ16401.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
Length = 481
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + + +NTL+ AY + S E+I+L+ M G+ PD +TY +V A
Sbjct: 218 LENAREVFDRMTTRTVVTWNTLLTAYGQHGHSEEAIRLYQRMEPDGVEPDEITYVTIVGA 277
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G VH I + GL + + L+ MY C +D A+ +FD
Sbjct: 278 CGDMQSLAEGRPVHDRIVRAGLENGALVSTALVSMYGKCGSLDEARKIFD 327
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +NTL+ AYA+ E ++L M G++ + +TY ++ A + + G ++H+
Sbjct: 100 IITWNTLMGAYAQYGHPDEVLRLQKRMELEGVKQNRVTYLSLLDACSELESLTDGQALHA 159
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G D + + ++ MY CK ++ A+ +FD M
Sbjct: 160 RITATGYVGDAVLDSAVVNMYTKCKSLERARRVFDRM 196
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 6 IETLIQLSKTA---HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM 61
+ +L++ S T HH QL A LK D N ++ S + + + + + +FN++
Sbjct: 209 LSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA 268
Query: 62 PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+ ++N LI +A+ ++LF +ML+ G P + TY V+ + L G
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSL-EQGKW 327
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH+ + K G YIGNTL+ MYA I AK +F +
Sbjct: 328 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 367
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL + LF+ MP + ++ LI Y+++ + E++ LF +ML G +P+ T ++
Sbjct: 155 SLEEAQDLFDK-MPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLL 213
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KAS G +H+ K G + ++G++LL MYA + AK +F+ +
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
V + ++N++I YA+ E+++LF++MLK ++P+ +T+ V+ A L+ G
Sbjct: 368 VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ 427
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ K + + T++ + ++ A +EMP
Sbjct: 428 YYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMP 469
>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
Length = 712
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHF-----TRSLFNNVMPPLFAYNTLIRAYA 75
QL + + L +++++S+ ++ SL F T +N+ P ++N LI +Y
Sbjct: 100 QLHGHIISSGLVEDSFLVSKLVM--FYSSLEFLPEAHTLVETSNLFRPC-SWNILITSYV 156
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
K +I + +M+ G+RPDN T+P ++KA + + G VH I +
Sbjct: 157 KHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLF 216
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N L+ MY C E+D A+ LFD M E
Sbjct: 217 VHNALISMYGRCGEVDTARNLFDNMLE 243
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 36/141 (25%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYP-------- 103
R+LF+N++ ++N++I Y+ E+ +LF+ M L + +T+
Sbjct: 234 ARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLR 293
Query: 104 ----------------FVVKASDQCLLIGVGGSVHSLIFKVGL-----------HSDKYI 136
F + D ++IG+G H ++G H +
Sbjct: 294 VGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTV 353
Query: 137 GNTLLRMYAACKEIDFAKALF 157
N L+ MYA CK+I A LF
Sbjct: 354 QNALVTMYARCKDIRHAYMLF 374
>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
Length = 613
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 47 PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIES-----IKLFDEMLKTGLRPDNL 100
P S+ + S+F + P F YNTL+R Y + ++LF +M+ G+ PD+
Sbjct: 80 PGSMAYAASIFAALDDPEAFDYNTLMRGYVAAAGGGGRDPAAALRLFVDMVDDGVEPDSY 139
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
T+PFV KA Q + G + + K+G D++ N+L+ Y C E D A+ F++M
Sbjct: 140 TFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQM 199
Query: 161 PE 162
+
Sbjct: 200 ED 201
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
+++ L+ AY + E ++ F M++ G RPD + +V A C +G VG S+H
Sbjct: 208 SWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESS---MVSALSACAHLGAHDVGRSIH 264
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + ++ +L+ MYA C I+ A A+FD M +
Sbjct: 265 CALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDD 304
>gi|115438849|ref|NP_001043704.1| Os01g0646000 [Oryza sativa Japonica Group]
gi|113533235|dbj|BAF05618.1| Os01g0646000 [Oryza sativa Japonica Group]
Length = 252
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLH---FTRSLFNNVMPP-LFAYNTLIR 72
H +L ++ L ++++ R I L + P + H + R +F+ + P F +N +IR
Sbjct: 32 HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIR 91
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-----GGSVHSLIFK 127
Y+ +++ +F EM + G+ PDN Y S G+ G ++H+L+ +
Sbjct: 92 GYSSCEAPRDALAVFREMRRRGVSPDN--YTMAAVVSASAAFAGLKWRSNGDAIHALVRR 149
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G SD ++ + L+ Y A + ++ A +F+EM E
Sbjct: 150 IGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYE 184
>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
Length = 977
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
ML G+RPD+ +P KA +G SVHS K G D ++G++++ MYA C E
Sbjct: 1 MLDNGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGE 60
Query: 150 IDFAKALFDEMPE 162
I A+ +FDEMP+
Sbjct: 61 IGDARKMFDEMPD 73
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIES 83
+KT D + ++ S + + + + R +F+ MP + +++ +I Y++ E+
Sbjct: 37 VKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDE-MPDRNVVSWSGMIYGYSQMGEDEEA 95
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
++LF + L L ++ T+ VV+ L+ +G +H L K S ++G++L+ +
Sbjct: 96 LRLFKQALIEDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISL 155
Query: 144 YAACKEIDFAKALFDEMP 161
Y+ C I+ A +F E+P
Sbjct: 156 YSKCGVIEDAYLVFHEIP 173
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +I AY + S++L+ EM +G+ D T+P ++KA G VH
Sbjct: 181 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHG 240
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L K G S ++ N+++ MY C +++ A+ LFD MPE
Sbjct: 241 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPE 279
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 50 LHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
L+ R LF+ MP + ++N++I AY+ SIE+++LF EM K L P+ T+ +
Sbjct: 267 LNGARQLFDR-MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAAL 325
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+A + I G +H+ + K + + ++ N L+ MYA ++ A +F M +
Sbjct: 326 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 381
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSL-PISLHFTR-----SLFNNVMP-PLFAYNTLIRAYAK 76
+F+ ++ ++Y I+ F+ +L + F + ++F N+ ++N+++ + +
Sbjct: 337 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 396
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
E+++ + EM G +PD + ++ AS + G +H+ K GL SD +
Sbjct: 397 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQV 456
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GN+L+ MYA + + +FD+MP+
Sbjct: 457 GNSLVDMYAKFCSMKYMDCIFDKMPD 482
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKT 77
Q+ A +K LD + + + + + + S+ + +F+ MP + ++ T+I +A+
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDK-MPDKDVVSWTTIIAGHAQN 498
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+++LF E+ G+ D + ++ A LI +HS I + GL SD +
Sbjct: 499 GSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQ 557
Query: 138 NTLLRMYAACKEIDFAKALFD 158
N ++ +Y C +D+A +F+
Sbjct: 558 NGIVDVYGECGNVDYAARMFE 578
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 52/95 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I Y + E+++LF M +TG+ PD+++ ++ A+ + G +H
Sbjct: 585 VVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHG 644
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + G + + +TL+ MYA C ++ ++ +F+
Sbjct: 645 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFN 679
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFN--NVMPPLFAYNTLIRAYA 75
HHH P++F +H + RF S+ SL + + LF+ + P A+N LIR ++
Sbjct: 34 HHH--PSIF-----NH----LLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAWNYLIRGFS 82
Query: 76 KTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+S + +I ++ ML + + RPD T+ F +KA ++ LI +H + + G +D
Sbjct: 83 ISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSGFLADA 142
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161
+ L+R Y+A ++ A +FDEMP
Sbjct: 143 IVSTNLVRCYSANGSVEIASKVFDEMP 169
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
Q+ A +K SLD N ++ + + + + L ++FN ++ LFA+ ++ YA+
Sbjct: 312 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 371
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+++K F +M + G++P+ T + + + G +HS+ K G D ++ +
Sbjct: 372 QGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVAS 431
Query: 139 TLLRMYAACKEIDFAKALFD 158
L+ MYA C ++ A+ +FD
Sbjct: 432 ALVDMYAKCGCVEDAEVVFD 451
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVM-PPLFAYNTLIRAY 74
H+ + A K + + I + F+ + S+ F +M L + N L+ +
Sbjct: 107 HYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGF 166
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
T + ++ ++L G P+ T+ ++K + G ++H + K G++ D
Sbjct: 167 CDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDS 226
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ N+L+ +YA C ++A +F E+PE
Sbjct: 227 HLWNSLVNVYAKCGSANYACKVFGEIPE 254
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 44/78 (56%)
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+++F++ML G P+ T+ ++++ + +G VH+ I K L + ++G L+
Sbjct: 275 GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVD 334
Query: 143 MYAACKEIDFAKALFDEM 160
MYA + ++ A+ +F+ +
Sbjct: 335 MYAKNRFLEDAETIFNRL 352
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--L 64
+ +++ K H H + L +TY+ + + S + R +F+ MP +
Sbjct: 121 SALRIGKGVHCHAVVSGFGL------DTYVQAALVTFYSKCGDMEGARQVFDR-MPEKSI 173
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
A+N+L+ + + + E+I++F +M ++G PD+ T+ ++ A Q + +G VH
Sbjct: 174 VAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQY 233
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I GL + +G L+ +Y+ C ++ A+ +FD+M E
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKE 271
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV- 60
S E +++ Q+ A + T + ++++ I L ++ +T LF +V
Sbjct: 9 SAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVP 68
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK--ASDQCLLIGVG 118
+P F +N++I++ +K + + + ML + + P N T+ V+K A L IG G
Sbjct: 69 LPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKG 128
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+++ GL D Y+ L+ Y+ C +++ A+ +FD MPE
Sbjct: 129 VHCHAVVSGFGL--DTYVQAALVTFYSKCGDMEGARQVFDRMPE 170
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL----TSLPISLHFTRSLFNNVMPPLFA---------Y 67
Q+ A +KT N+ + +R +L + P F R +F N FA +
Sbjct: 8 QIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLW 67
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +I++++ ++ F ML+ G+ D + V+KA + + G +H + K
Sbjct: 68 NAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRK 127
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G+ SD ++ N L+ +Y C + FA+ +FD MP+
Sbjct: 128 TGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQ 162
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+ YNTL+RA+++T L PDN T+PF++K + L +G +H+L
Sbjct: 61 YYYNTLLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHAL 120
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K+G D YI N LL MY+ ++ A++LFD MP
Sbjct: 121 LTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMP 157
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKT 77
QL AL K + YI + + + S L RSLF+ MP + ++ ++I
Sbjct: 116 QLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDR-MPHRDVVSWTSMIGGLVNH 174
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG--LHSDKY 135
+E+I LF+ ML+ G+ + T V++A + +G VH+ + + G +HS
Sbjct: 175 DLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSN 234
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ L+ MYA I A+ +FD++
Sbjct: 235 VSTALVDMYAKGGCIASARKVFDDV 259
>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 467
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 30 SLDHNTYIISRFILTSLPIS-----LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESI 84
SL+ +++ RF+ +S I L +++L + YNTLIR+Y T S+
Sbjct: 12 SLEDALHLLQRFLYSSNQIKQIHAVLFTSKALVASRWKTKCVYNTLIRSYLTTGQYKASL 71
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
LF ML + ++P+NLT+P ++KA+ + G ++H F+ G+ D ++ + +R Y
Sbjct: 72 ALFTHMLASQVQPNNLTFPSLIKAACSSFSVSSGVALHGQAFRRGVLWDPFVQTSFVRFY 131
Query: 145 AACKEIDFAKALFDEM 160
++ ++ +FD++
Sbjct: 132 GEVGDLKSSRKMFDDI 147
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH--FTRSLFNNVM-PPLFA 66
++L++ +H L L N+ + ++ I + I H +R +F+++ +F
Sbjct: 39 LKLTRQSHSR------ILSLGLSQNSLLATKLIF-AYAICQHPYHSRLVFDSLQHKNVFL 91
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+LI YAK E+ +LF++M + + PD+ T + K S + + G S+H
Sbjct: 92 WNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G SD + N+++ MY C + ++ +FDEM
Sbjct: 152 RIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEM 185
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++ +I Y + S E++ LF +M + G+ P+ ++ V+ A + G +H
Sbjct: 221 VFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIH 280
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ L+++ + N L+ MY+ C +D A+ +F++
Sbjct: 281 GFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFED 317
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLF--NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL R +F +++ +++++I Y E+I L+D+ML+ G+RPD +T ++
Sbjct: 307 SLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGIL 366
Query: 107 KASDQCLLIGVGGSVH-SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + L+ G +++ S+I G+ I ++ M ++D A MP
Sbjct: 367 SACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMP 422
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 23 PALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCS 80
PA+FL T L ++ ++ +L R++ + MP + ++ T+I Y++T
Sbjct: 43 PAVFLGTRL------VTMYVRCG---ALDDARNVLDR-MPERSVVSWTTMISGYSQTERH 92
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
+E++ LF +ML+ G P+ T V+ + I G VHSL+ K S ++G++L
Sbjct: 93 VEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSL 152
Query: 141 LRMYAACKEIDFAKALFDEMPE 162
L MYA + I A+ +FD +PE
Sbjct: 153 LDMYAKSENIQEARRVFDTLPE 174
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTL 70
++ + Q+ +L +KT+ + + ++ S + + + ++ R +F+ +P + + +
Sbjct: 125 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDT-LPERDVVSCTAI 183
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
I YA+ E++ LF ++ G++ +++T+ +V A + G VH+LI + L
Sbjct: 184 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 243
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+L+ MY+ C ++ +++ +FD M E
Sbjct: 244 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 275
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP----- 63
L+ S T Q A LK+ L N+ +++R S + L ++ P
Sbjct: 28 LLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDPLVTALLRPSVPLD 87
Query: 64 LFAYNTLIRAYAKT---SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI----G 116
F NTLIRA+A + S + + F ML+ + P+ T+PF++KA C +
Sbjct: 88 AFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKA---CAALPGSPD 144
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF---AKALFDEMPE 162
VG H+ K G +D+Y+ NTL+ MY +C F A+ +FD MP+
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPK 192
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R++F+ MP A ++ +I Y + S +++ LF EM G++ D +T V+ A+
Sbjct: 184 RNVFDR-MPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATD 242
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + V + + G+ + N L+ A C ++D A A+F+ M +
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQ 293
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH--FTRSLFNNVM-PPLFA 66
++L++ +H L L N+ + ++ I + I H +R +F+++ +F
Sbjct: 39 LKLTRQSHSR------ILSLGLSQNSLLATKLIF-AYAICQHPYHSRLVFDSLQHKNVFL 91
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+LI YAK E+ +LF++M + + PD+ T + K S + + G S+H
Sbjct: 92 WNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G SD + N+++ MY C + ++ +FDEM
Sbjct: 152 RIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEM 185
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++ +I Y + S E++ LF +M + G+ P+ ++ V+ A + G +H
Sbjct: 299 VFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIH 358
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ L+++ + N L+ MY+ C +D A+ +F++
Sbjct: 359 GFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFED 395
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLF--NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL R +F +++ +++++I Y E+I L+D+ML+ G+RPD +T ++
Sbjct: 385 SLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGIL 444
Query: 107 KASDQCLLIGVGGSVH-SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + L+ G +++ S+I G+ I ++ M ++D A MP
Sbjct: 445 SACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMP 500
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 40 RFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 98
RF S L + + LF+ + P F YNTLIR YAK+S S+ L ++M + G+ PD
Sbjct: 3 RFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPD 62
Query: 99 NLTYPFVVKASDQCL--------LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
T+ F++KA + L+ +H + K+G S ++ N L+ +YAA
Sbjct: 63 EFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNP 122
Query: 151 DFAKALFDE 159
A +FDE
Sbjct: 123 VVAWRVFDE 131
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP + ++ T++ AY++ S E+++L+ ML G+RPD +T V+
Sbjct: 153 LERARWVFDQ-MPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVIS 211
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G SVHS I + G + N L+ MYA C +D A +F+ M
Sbjct: 212 ACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSM 264
>gi|302793025|ref|XP_002978278.1| hypothetical protein SELMODRAFT_108052 [Selaginella moellendorffii]
gi|300154299|gb|EFJ20935.1| hypothetical protein SELMODRAFT_108052 [Selaginella moellendorffii]
Length = 337
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL RS+FN + L ++N LI YA+ S E++++F M G++ D +T+ V++
Sbjct: 60 SLTGARSVFNKMDRNDLLSWNALIAGYAEQGDSHEALQVFRWMACEGMKSDRVTFLSVLE 119
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G +VH+ I GL SD + N+L+ +Y C + A++LFD M
Sbjct: 120 ACSSLTALEQGRAVHASIVSRGLDSDTGLKNSLINLYGKCGSLKDAESLFDCM 172
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
M + G++PD + + ++ D C +G G VH + G D I + L+ MY
Sbjct: 1 MEQEGIKPDKIVFVSLI---DACSCLGDLRQGMRVHERLHAGGFDIDNSIASGLVNMYRK 57
Query: 147 CKEIDFAKALFDEMP 161
C + A+++F++M
Sbjct: 58 CGSLTGARSVFNKMD 72
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--L 64
+ +++ K H H + L +TY+ + + S + R +F+ MP +
Sbjct: 121 SALKIGKGVHCHAVVSGFGL------DTYVQAALVTFYSKCGDMEAARQVFDR-MPEKSV 173
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
A+N+L+ + + + ++I++F +M ++G PD+ T+ ++ A Q I +G VH
Sbjct: 174 VAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQY 233
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I GL + +G L+ +Y+ C ++ A+ +FD+M E
Sbjct: 234 IVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKE 271
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPL 64
E +++ Q+ A + TS + ++++ I L ++ +T LF +V +P
Sbjct: 13 EAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDD 72
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N++I++ +K + + + ML + + P N T+ V+K+ + +G VH
Sbjct: 73 FLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCH 132
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D Y+ L+ Y+ C +++ A+ +FD MPE
Sbjct: 133 AVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPE 170
>gi|125556054|gb|EAZ01660.1| hypothetical protein OsI_23695 [Oryza sativa Indica Group]
Length = 252
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 23 PALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCS 80
PA+FL T L ++ ++ +L R++ + MP + ++ T+I Y++T
Sbjct: 43 PAVFLGTRL------VTMYVRCG---ALDDARNVLDR-MPERSVVSWTTMISGYSQTERH 92
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
+E++ LF +ML+ G P+ T V+ + I G VHSL+ K S ++G++L
Sbjct: 93 VEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSL 152
Query: 141 LRMYAACKEIDFAKALFDEMPE 162
L MYA + I A+ +FD +PE
Sbjct: 153 LDMYAKSENIQEARRVFDTLPE 174
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM-PPLFAYNTL 70
+++ H ++ L L +++++ ++S + + S++N++ P +FA N +
Sbjct: 44 ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNM 103
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
IR + K SI L+ M ++ + P+ T FV++A I G V + + K+G
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLG 163
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
D ++ N L+ +Y C ++ AK +FDE+P
Sbjct: 164 FVKDVFVRNALIHLYCTCCRVESAKQVFDEVP 195
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++ T+I + +++ F E+ + LRP+ ++ A+ Q + G
Sbjct: 226 MPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYG 285
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+HS+ + +G L+ MYA C ID ++ LFD MPE
Sbjct: 286 KRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPE 329
>gi|297849370|ref|XP_002892566.1| hypothetical protein ARALYDRAFT_888304 [Arabidopsis lyrata subsp.
lyrata]
gi|297338408|gb|EFH68825.1| hypothetical protein ARALYDRAFT_888304 [Arabidopsis lyrata subsp.
lyrata]
Length = 317
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 13/93 (13%)
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
L R Y+ + +ESI + EM + G++P+ LT+PF++K + + K G
Sbjct: 2 LSRGYSSSDTLVESIWFYSEMGRRGIKPNKLTFPFLLK-------------IQVEVLKHG 48
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
SD Y+GN L+ +Y +CK+ A+ +FDEM +
Sbjct: 49 FDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTD 81
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYA 75
H H + F + ++S ++ SL R +F+ MP + ++ +I AYA
Sbjct: 87 HAHMIQTQFECQDISLGNKLVSIYVKLG---SLVEARRVFDE-MPVKNVVSWTAMIAAYA 142
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ E++ F EM G++P++ T+ ++ A C + V G H I K G S+ +
Sbjct: 143 RHEHGQEALGFFYEMQDVGIQPNHFTFASILPA---CTDLEVLGEFHDEIVKGGFESNVF 199
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+GN L+ MYA I+FA+ LFD+MP+
Sbjct: 200 VGNGLVDMYAKRGCIEFARELFDKMPQ 226
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y++ + ++KLF +M ++P+ T+ V+ A ++ G H ++
Sbjct: 355 SWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVV 414
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G SD +GNTL+ MYA C I+ A+ +FD M
Sbjct: 415 IRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRM 449
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ + +I YA CS ES++LF++M TGL+PD +T+ V+ A L+ G
Sbjct: 456 SLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEG 508
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAKTS 78
QL A F+K+ N + F S L++ R L N P L + YNT+IRAY+ TS
Sbjct: 6 QLHAQFIKSQNQRNFSKLFTFAAQSPSGDLNYARLLLN-TNPSLNSYYYNTIIRAYSHTS 64
Query: 79 CS---IESIKLFDEMLK--TGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
+++ LF ML+ T + +PD TY F +K+ + L +H I K+G
Sbjct: 65 NPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGF 124
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEM 160
D YI N L+ MY+ E+ A+ +FD M
Sbjct: 125 DLYIQNALIHMYSEIGELVIARQVFDRM 152
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLI 71
K QL K + YI + I + S L R +F+ + + ++ ++I
Sbjct: 105 KLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMI 164
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
+ ++E+I+LF ML+ G+ + T V++ + VG VH ++ + G+
Sbjct: 165 AGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGID 224
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ L+ MY+ C ++ A+ +FD++
Sbjct: 225 FKANVCTALIHMYSKCGCLESAREVFDDV 253
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L+ +N +IR +++ ++ M +G+ +NLTYP ++KA I G +H
Sbjct: 11 LYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHG 70
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G +D ++ L+ MY+ C + A+ +FDEMP+
Sbjct: 71 HVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQ 109
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ ++ + ++ ++I Y E++ LF M++T +RP+ T VV A
Sbjct: 307 RRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADL 366
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G + IF GL SD+ + +L+ MY+ C I A+ +F+ + +
Sbjct: 367 GSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTD 416
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I Y K ++E+ LF +M + D + + ++ Q + + SVHS
Sbjct: 217 IISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHS 276
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ K G + + N L+ MYA C + A+ +FD + E
Sbjct: 277 LVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIE 315
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS-- 109
R +F+ MP + ++N ++ AY++ S +++ L EM G P T+ ++
Sbjct: 101 RQVFDE-MPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSN 159
Query: 110 -DQCLLIGVGGSVHSLIFKVGL-HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D +G S+H + K+G+ + + + N+L+ MY +D A+ +FD M E
Sbjct: 160 LDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDE 214
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +NT+I+ YA +E++ +++ M +G+ + T+PFV+KA G ++H
Sbjct: 72 VFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHG 131
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL D ++GN L+ YA C EI ++ +FD + E
Sbjct: 132 HVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISE 170
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLK----TGLRPDNLTYPFVVKASDQCLLIGVGG 119
+ +N++I YA C+ +++ LF ML+ T PD+ T ++ A Q I G
Sbjct: 173 IVTWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGL 232
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+HS + K G+ D +G+ L+ MYA C ++ A+ +FD + +
Sbjct: 233 WIHSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDD 275
>gi|255546351|ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546691|gb|EEF48189.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 352
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 58/98 (59%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N +IR+Y + +++++++ M + G+ PD+ T P V+KA+ Q I +G + S+
Sbjct: 89 FHWNNIIRSYTRLDAPVKALQVYISMSRAGVLPDSYTLPIVLKAACQIFSIEIGKQLQSV 148
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++GL S++Y + + Y+ +I A +F+E PE
Sbjct: 149 AIRLGLESNEYCESGFISFYSKSGDIKNAYKMFEENPE 186
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
QL ++ ++ L+ N Y S FI S + +F N L ++N +I ++
Sbjct: 144 QLQSVAIRLGLESNEYCESGFISFYSKSGDIKNAYKMFEENPERKLGSWNAIIGGLSQGG 203
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--HSDKYI 136
+ E+I++F EM K G PD++T V+ A + + +H +F + ++ +
Sbjct: 204 HAKEAIEIFIEMRKCGFVPDDVTMVSVISACGSLGDLNLAIQLHKYVFHANVFGRTNILV 263
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY C +D A+ +F M E
Sbjct: 264 MNSLIDMYGKCGRMDLARRVFCTMGE 289
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 26 FLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIK 85
FL S D TY + LH RS+ ++ F+YNTL+ +YA +I
Sbjct: 47 FLGKSADFATYS---------SVILHSIRSVLSS-----FSYNTLLSSYAVCDKPRMTIF 92
Query: 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145
++ + G PD T+P V KA + I G +H + K+G + D Y+ N+L+ Y
Sbjct: 93 VYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYG 152
Query: 146 ACKEIDFAKALFDEMP 161
C E A +FD+MP
Sbjct: 153 VCGESRNACKVFDQMP 168
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N++I S E+I+LF M +G++PD V+ A + G VH
Sbjct: 272 SWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEY 331
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G+ D +IG ++ MYA C I+ A +F+
Sbjct: 332 VLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFN 365
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 61 MP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++ +I + +T E++ F +M + P+ TY + +S + + +G
Sbjct: 167 MPVRDVVSWTGIITGFTRTGLYKEALDTFSKM---DVEPNLATYVCALVSSGRVGCLSLG 223
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H LI K GN L+ MY C+++ A +F E+ +
Sbjct: 224 KGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQK 267
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 57/101 (56%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + A+N +I +A+ +SI+LF M K G++ T V+ A + G V
Sbjct: 148 PNVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLV 207
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ K GL S+ Y+G++L+ MYA CKE++ AK +FD + E
Sbjct: 208 HAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPIDE 248
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFT--RSLFNNVMPP--LFAYNTLIRAYAK 76
Q+ L LK L ++ + +L SL T R LF+ P + +I A+
Sbjct: 508 QIHCLILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQ 567
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+CS E+++ + EM PD T+ V++A IG G +HSLIF+ GL D+
Sbjct: 568 NNCSDEALQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDEST 627
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
+ L+ MYA C ++ + +F++M
Sbjct: 628 CSALIDMYAKCGDVRSSMQVFEDM 651
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + +E+ +F +M G+ PD ++ ++ A G +H L
Sbjct: 354 SWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLS 413
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL + Y G++L+ MYA C ++ A+ + MPE
Sbjct: 414 VKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPE 450
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESI 84
+K LD N Y+ S I + + L + +F+ + + +N ++ YA+ + E I
Sbjct: 212 IKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVI 271
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG-SVHSLIFKVGLHSDKYIGNTLLRM 143
+L M G PD TY ++ A CL GG +HS+I K S+ ++GN L+ M
Sbjct: 272 ELLSNMKSCGFHPDEFTYTSILSAC-ACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDM 330
Query: 144 YAACKEIDFAKALFDEM 160
YA ++ A+ F+ M
Sbjct: 331 YAKSGFLEDARKQFELM 347
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC-----LLIGVGGSVH 122
N LI YA + E+I LF++M GL P +T+ ++ D C L++G+ +H
Sbjct: 457 NALIAGYAPVNLE-EAIILFEKMQAEGLNPSEITFASLL---DGCGGPEQLILGI--QIH 510
Query: 123 SLIFKVGL-HSDKYIGNTLLRMYAACKEIDFAKALFDE 159
LI K GL + D ++G +LL MY A+ LF E
Sbjct: 511 CLILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSE 548
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I YA+ + ++I LF EM K +RP+ +T ++ A Q + +G VH
Sbjct: 374 LASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHD 433
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
LI + S+ ++ L+ MYA C I A+ LF MPE
Sbjct: 434 LINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPE 472
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT++ K SC E+I +F +M+K G+ D+ T V+ + + +G + L
Sbjct: 175 WNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAM 234
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KVG HS Y+ L +Y+ C EI+ A+ LF ++ +
Sbjct: 235 KVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQ 270
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P LF YN LIRA++ + ++ L+ + K T L PDN TY FV+ + L +
Sbjct: 71 PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLL-H 129
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HS++ G SD ++G+ ++ Y + A+ +FD M E
Sbjct: 130 AHSIV--AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLE 169
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 22 LPALFLKTSLDHNTYIISRF-ILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSC 79
+ L +K + Y+I+ L S + R LF + P L +YN +I Y +
Sbjct: 229 IQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNE 288
Query: 80 SIESIKLFDEMLKTGLRPDNLT--------YPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
+ S++LF E+L +G + ++ + +PF +C +H K G+
Sbjct: 289 TESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRC--------IHGFCTKSGVV 340
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S+ + L +Y+ EI+ A+ LFDE E
Sbjct: 341 SNSSVSTALTTVYSRLNEIESARLLFDESSE 371
>gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 767
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+N + ++N LI Y K+ +E+ LF EM G++P+ T V++ LL+
Sbjct: 85 SNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLLLLLR 144
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +H K G D + N LL MYA CK I A+ LFD M
Sbjct: 145 GEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFDTM 187
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
NNV + +++ Y++ + ++I+ F ++ + G + + T+P V+ A V
Sbjct: 192 NNV-----TWTSMLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLTACASVSACRV 246
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G VH I K G ++ Y+ + L+ MYA C++++ A+AL + M
Sbjct: 247 GVQVHGCIVKSGFKTNIYVQSALIDMYAKCRDLESARALLEGM 289
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%)
Query: 43 LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
LTSL I + + + ++ L+ E++KLF M G+ PD +
Sbjct: 363 LTSLGIMDSALKVFEGMIEKDVISWTALVTGNTHNGFYEEALKLFCNMRVGGIYPDQIVT 422
Query: 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+ AS + L+ G VH K G S + N+L+ MY C ++ A +F+ M
Sbjct: 423 ASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSM 480
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
Q+ A +K SLD N ++ + + + + L ++FN ++ LFA+ ++ YA+
Sbjct: 553 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 612
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+++K F +M + G++P+ T + + + G +HS+ K G D ++ +
Sbjct: 613 QGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVAS 672
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MYA C ++ A+ +FD +
Sbjct: 673 ALVDMYAKCGCVEDAEVVFDGL 694
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ LI + ++ LF EM + G+ + TY +KA CL + G VH+
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KVG SD ++G+ L+ +YA C E+ A+ +F MP+
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPK 292
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 51/97 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N L+ + +++F++ML G P+ T+ ++++ + +G VH+
Sbjct: 497 LISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHA 556
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K L + ++G L+ MYA + ++ A+ +F+ +
Sbjct: 557 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 593
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G ++H + K G++ D ++ N+L+ +YA C ++A +F E+PE
Sbjct: 147 GKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +++ +I + S E+ ++F M +G+ P+ T +V A+ + G S+
Sbjct: 394 PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453
Query: 122 HSLIFKVGLHSDKYIGNTLLRMY 144
H+ + K G D + N L+ MY
Sbjct: 454 HACVCKYGFEYDNTVCNALVTMY 476
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N L+ +A+ + + + LF M + + T V+K + G VHSL
Sbjct: 297 SWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLA 356
Query: 126 FKVGLHSDKYIGNTLLRMYAAC 147
++G D++I L+ MY+ C
Sbjct: 357 IRIGCELDEFISCCLVDMYSKC 378
>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Brachypodium distachyon]
Length = 757
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 21 QLPALFLKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ +L +K LDHN+Y S + + L + +F + P L ++N++I A +
Sbjct: 265 QIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEG 324
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ L EM +GLRPD +T ++ A C I G +HS + K+GL D + N
Sbjct: 325 LLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCN 384
Query: 139 TLLRMYAACKEIDFAKALFDE 159
+LL MYA C + A +F E
Sbjct: 385 SLLSMYARCMDFSSAMDVFHE 405
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++ ++I +A+ C +E++++F EM+ G+ P+ + V A + G +HSL
Sbjct: 210 SWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSL 269
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
K L + Y G +L MYA CK+++ AK +F
Sbjct: 270 SVKYRLDHNSYAGCSLSDMYARCKKLESAKRVF 302
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 18 HHHQL----PALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP---PLFAYNTL 70
H H L P L T L N ++I+ + + P S R +F+ MP P+ ++ ++
Sbjct: 61 HRHLLASPDPNLVRNTVL--NNHLITMYGRCAAPES---ARLVFDE-MPAKNPV-SWASV 113
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
I A+A+ S +++ LF ML++G PD V+A + IGVG VH+ K
Sbjct: 114 IAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSEN 173
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
SD + N L+ MY+ + LF M E
Sbjct: 174 GSDLIVQNALVTMYSKSGLVADGFLLFGRMRE 205
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
KLF+ + ++ D ++ V+ AS + + VH+ FKVGL +D + N L+ Y
Sbjct: 432 KLFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTY 491
Query: 145 AACKEIDFAKALFDEM 160
A C +D A LF+ M
Sbjct: 492 AKCGSLDDAVKLFEMM 507
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105
S+H T LFN P + + TLI ++++ +++ F+ M TG+ P++ T+ +
Sbjct: 147 SIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAI 206
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ A L+ G +H+LI K +D ++ LL MYA C + A+ +FDEMP
Sbjct: 207 LPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMP 262
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I + K +I +F E+L G PD ++ V+ A + + G VH
Sbjct: 266 LVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHG 323
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I K GL Y+ N+L+ MY C + A LF
Sbjct: 324 SIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLF 357
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I + ++ F M++ G+ PD +Y + AS + G +HS +
Sbjct: 368 WNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVL 427
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + I ++L+ MY C + A +F E E
Sbjct: 428 KTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKE 463
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ + +I + + C+ E+IKLF+EML G+ P+ +T+ V+ A
Sbjct: 466 VVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSA 510
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 23 PALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCS 80
PA+FL T L ++ ++ +L R++ + MP + ++ T+I Y++T
Sbjct: 43 PAVFLGTRL------VTMYVRCG---ALDDARNVLDR-MPERSVVSWTTMISGYSQTERH 92
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
+E++ LF +ML+ G P+ T V+ + I G VHSL+ K S ++G++L
Sbjct: 93 VEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSL 152
Query: 141 LRMYAACKEIDFAKALFDEMPE 162
L MYA + I A+ +FD +PE
Sbjct: 153 LDMYAKSENIQEARRVFDTLPE 174
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLI 71
++ + Q+ +L +KT+ + + ++ S + + + ++ R +F+ + + + +I
Sbjct: 125 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 184
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
YA+ E++ LF ++ G++ +++T+ +V A + G VH+LI + L
Sbjct: 185 SGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELP 244
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+L+ MY+ C ++ +++ +FD M E
Sbjct: 245 FFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 275
>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H R++F V L +NTLI YA+ S ++I F M G PD +T ++ A
Sbjct: 224 VHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSA 283
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q + VG VHSLI G+ ++++ N L+ MYA C +++ A ++F+ +
Sbjct: 284 CAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESI 335
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL--IGVGGSVH 122
F + LI+ + I+++ L+ + + G+ P +++A C++ + +G +H
Sbjct: 12 FHVSNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWV-PLILRAC-ACVVPRVVLGKLLH 69
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S K G+ SD +G++L+ MY C + A+ +FDEMPE
Sbjct: 70 SESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPE 109
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis
thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene
[Arabidopsis thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis
thaliana]
Length = 1322
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSI 81
A +KTSL+ + ++++FI L S + P +F YN L + + S I
Sbjct: 794 AAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPI 853
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
S++L+ ML+ + P + TY +VKAS G H F G H I TL+
Sbjct: 854 RSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVK--IQTTLI 911
Query: 142 RMYAACKEIDFAKALFDEMPE 162
Y+A I A+ +FDEMPE
Sbjct: 912 DFYSATGRIREARKVFDEMPE 932
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L SLFN + + + ++ T+I+ Y++ E+I +F +M++ G+ PD +T V+
Sbjct: 981 NLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVIS 1040
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A ++ +G VH + G D YIG+ L+ MY+ C ++ A +F +P+
Sbjct: 1041 ACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK 1095
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-------LRPDNLTYPFV 105
R +F+ + P F YNTLIR A + +++ ++ M + LRPD T+PFV
Sbjct: 62 RLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFV 121
Query: 106 VKASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
++A C +G G VH+ + K G SD ++ N L+ M+A ++ A ALFD
Sbjct: 122 LRA---CAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD 174
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + ++++LF++M G +PD +T ++ A + G +H +
Sbjct: 245 SWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFL 304
Query: 126 ----FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
++G +GN L+ MYA C + A +F
Sbjct: 305 SGRFSRIG--PTTALGNALIDMYAKCGSMTSALEVF 338
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-------LRPDNLTYPFV 105
R +F+ + P F YNTLIR A + +++ ++ M + LRPD T+PFV
Sbjct: 62 RLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFV 121
Query: 106 VKASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
++A C +G G VH+ + K G SD ++ N L+ M+A ++ A ALFD
Sbjct: 122 LRA---CAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD 174
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I Y + ++++LF++M G +PD +T ++ A + G +H +
Sbjct: 245 SWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFL 304
Query: 126 ----FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
++G +GN L+ MYA C + A +F
Sbjct: 305 SGRFSRIG--PTTALGNALIDMYAKCGSMTSALEVF 338
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 23 PALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCS 80
PA+FL T L ++ ++ +L R++ + MP + ++ T+I Y++T
Sbjct: 75 PAVFLGTRL------VTMYVRCG---ALDDARNVLDR-MPERSVVSWTTMISGYSQTERH 124
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
+E++ LF +ML+ G P+ T V+ + I G VHSL+ K S ++G++L
Sbjct: 125 VEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSL 184
Query: 141 LRMYAACKEIDFAKALFDEMPE 162
L MYA + I A+ +FD +PE
Sbjct: 185 LDMYAKSENIQEARRVFDTLPE 206
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTL 70
++ + Q+ +L +KT+ + + ++ S + + + ++ R +F+ +P + + +
Sbjct: 157 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDT-LPERDVVSCTAI 215
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
I YA+ E++ LF ++ G++ +++T+ +V A + G VH+LI + L
Sbjct: 216 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 275
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+L+ MY+ C ++ +++ +FD M E
Sbjct: 276 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 307
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L + +I +A+ C+ ++I LF +M +G PD TY V+ A + L+ +G
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 268
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACK---EIDFAKALFDEMPE 162
+HS + ++GL D +G +L+ MYA C +D ++ +F++MPE
Sbjct: 269 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 315
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YN ++ YAK S E+ LF+E+ TG+ T+ ++ + +G G +H
Sbjct: 420 LVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 479
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G S++ I N L+ MY+ C I+ A +F+EM +
Sbjct: 480 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 518
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFV 105
S+ +R +F MP + ++ +I AY ++ C E+I+LF +M+ +RP++ ++ V
Sbjct: 302 SVDDSRKVFEQ-MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 360
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+KA G V+S K+G+ S +GN+L+ MYA ++ A+ FD
Sbjct: 361 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 413
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +++ ++ +A S ++I F +ML+ G P+ + V++A VG ++
Sbjct: 111 LVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYG 170
Query: 124 LIFKVG-LHSDKYIGNTLLRMYA-ACKEIDFAKALFDEMPE 162
+ K G L +D +G L+ M+ ++ A +FD+MPE
Sbjct: 171 FVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 211
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
D M + PD TY ++K+ + +G VH + + GL D + NTL+ +Y+
Sbjct: 32 LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 91
Query: 147 CKEIDFAKALFDEM 160
C + + A+ +F+ M
Sbjct: 92 CGDTETARLIFEGM 105
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKT 77
Q+ LK N I + I + S ++ +FN + + ++ ++I +AK
Sbjct: 475 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 534
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ ++++F +ML+TG +P+ +TY V+ A +I G
Sbjct: 535 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 575
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L + +I +A+ C+ ++I LF +M +G PD TY V+ A + L+ +G
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACK---EIDFAKALFDEMPE 162
+HS + ++GL D +G +L+ MYA C +D ++ +F++MPE
Sbjct: 251 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 297
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YN ++ YAK S E+ LF+E+ TG+ T+ ++ + +G G +H
Sbjct: 402 LVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 461
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G S++ I N L+ MY+ C I+ A +F+EM +
Sbjct: 462 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 500
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFV 105
S+ +R +F MP + ++ +I AY ++ C E+I+LF +M+ +RP++ ++ V
Sbjct: 284 SVDDSRKVFEQ-MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 342
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+KA G V+S K+G+ S +GN+L+ MYA ++ A+ FD
Sbjct: 343 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 395
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +++ ++ +A S ++I F +ML+ G P+ + V++A VG ++
Sbjct: 93 LVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYG 152
Query: 124 LIFKVG-LHSDKYIGNTLLRMYA-ACKEIDFAKALFDEMPE 162
+ K G L +D +G L+ M+ ++ A +FD+MPE
Sbjct: 153 FVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 193
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
D M + PD TY ++K+ + +G VH + + GL D + NTL+ +Y+
Sbjct: 14 LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 73
Query: 147 CKEIDFAKALFDEM 160
C + + A+ +F+ M
Sbjct: 74 CGDTETARLIFEGM 87
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKT 77
Q+ LK N I + I + S ++ +FN + + ++ ++I +AK
Sbjct: 457 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 516
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ ++++F +ML+TG +P+ +TY V+ A +I G
Sbjct: 517 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 557
>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 602
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 55/96 (57%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N++I Y++ E++KLF EM GL P + T ++ A ++ G VHSL+
Sbjct: 272 FNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVA 331
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G S+ ++ + LL MY+ C ID A+ +FD+ E
Sbjct: 332 KMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVE 367
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS-------DQCLLIGVG 118
++ ++I ++K E+I F EML + ++P+ +TY V+ A DQC L+
Sbjct: 169 SWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALL--- 225
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
H+ + K+G ++ + L+ Y+ C ID A LF
Sbjct: 226 ---HAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLF 261
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
AK + E+++ F M +G +P + + + L G+G +H+ I + G +
Sbjct: 77 AKHANVREALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNL 136
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
++ + L+ +YA C I AK +FD M
Sbjct: 137 FLNSALVDLYAKCDAIVDAKRVFDGM 162
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 67 YNTLIRAYAKT-SCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+N LIRAY+++ + I++I +++ +KT RPDN TYP ++KA + G VH+
Sbjct: 42 WNCLIRAYSRSPTAPIKAILVYNFFIKTCSTRPDNYTYPCLLKACSRLFTDSNGKQVHTH 101
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL SD Y+ N L+ Y + A LFD MP+
Sbjct: 102 VIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPD 139
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV--------MPP--L 64
T + Q+ +KT LD + Y+ + + HF S+ N+ MP +
Sbjct: 91 TDSNGKQVHTHVIKTGLDSDIYVQNALV--------HFYGSVGNSTDACFLFDRMPDRDV 142
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV--GGSVH 122
++N+L+ Y + E + LF +++ ++ D ++ V+ A Q + G+ G SVH
Sbjct: 143 ASWNSLMGIYNTNNSFTEVMVLFKKLMCGCVKADKISLVIVLSACAQAQMEGLEYGRSVH 202
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ KVG + N LL Y CKEID A +FDE
Sbjct: 203 GYVIKVGFGCFLNVDNALLNFYIKCKEIDDASKMFDE 239
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 33 HNTYIISRFILTSLPISL---HFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFD 88
H ++S IL + + + R +F+ ++ +N ++ AY K C E++ LF+
Sbjct: 242 HEGDVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFE 301
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK-VGLHSDKYIGNTLLRMYAAC 147
+M G+ PD T V+ A + +H I + + D ++ L+ MY+ C
Sbjct: 302 KMDSAGVIPDENTMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKC 361
Query: 148 KEIDFAKALFDEMP 161
++ A F +M
Sbjct: 362 GSVEEALVTFYKME 375
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ LF+ + + + ++N +I YA+T E+++LF +M+KT +RPD T VV A Q
Sbjct: 173 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 232
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I +G VH I G S+ I N L+ +Y+ C E++ A LF+ +
Sbjct: 233 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGL 281
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMPP-LFAYNTLIRAYAKT 77
A +KT L + Y +S+ I + +S HF S+F + P L +NT+ R +A +
Sbjct: 8 AQMIKTGLHNTNYALSKLIEFCV-LSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALS 66
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S + ++ L+ M+ GL P+ T+PF++K+ + G +H + K+G D Y+
Sbjct: 67 SDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVH 126
Query: 138 NTLLRMYAACKEIDFAKALFDE 159
+L+ MY ++ A+ +FD+
Sbjct: 127 TSLISMYVQNGRLEDARKVFDQ 148
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 286 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHV 345
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ AK +FD M
Sbjct: 346 YINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM 384
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +I AY + S++L+ EM +G+ D T+P ++KA G VH
Sbjct: 145 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHG 204
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L K G S ++ N+++ MY C +++ A+ LFD MPE
Sbjct: 205 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPE 243
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 50 LHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
L+ R LF+ MP + ++N++I AY+ SIE+++LF EM K L P+ T+ +
Sbjct: 231 LNGARQLFDR-MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAAL 289
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+A + I G +H+ + K + + ++ N L+ MYA ++ A +F M +
Sbjct: 290 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 345
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSL-PISLHFTR-----SLFNNVMP-PLFAYNTLIRAYAK 76
+F+ ++ ++Y I+ F+ +L + F + ++F N+ ++N+++ + +
Sbjct: 301 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 360
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
E+++ + EM G +PD + ++ AS + G +H+ K GL SD +
Sbjct: 361 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQV 420
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GN+L+ MYA + + +FD+MP+
Sbjct: 421 GNSLVDMYAKFCSMKYMDCIFDKMPD 446
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAY 74
H Q+ A +K LD + + + + + + S+ + +F+ MP + ++ T+I +
Sbjct: 401 HGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDK-MPDKDVVSWTTIIAGH 459
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
A+ +++LF E+ G+ D + ++ A LI +HS I + GL SD
Sbjct: 460 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDL 518
Query: 135 YIGNTLLRMYAACKEIDFAKALFD 158
+ N ++ +Y C +D+A +F+
Sbjct: 519 VLQNGIVDVYGECGNVDYAARMFE 542
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 52/95 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I Y + E+++LF M +TG+ PD+++ ++ A+ + G +H
Sbjct: 549 VVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHG 608
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + G + + +TL+ MYA C ++ ++ +F+
Sbjct: 609 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFN 643
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT--SLPIS-LHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
Q+ LK + +SR + T S+ S L + R +F+ + P +NT+IRAY+
Sbjct: 29 QIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSN 88
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
++ E++ L+ +ML + + T+PF++KA + +H I K G S+ Y
Sbjct: 89 SNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYA 148
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
N+LLR+YA I A LFD +P
Sbjct: 149 TNSLLRVYAISGSIKSAHVLFDLLP 173
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
MP + ++ ++I + +T E++ L +ML G++PD +T + A +
Sbjct: 201 QAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALE 260
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ I K + D +G L+ MY C E+ A +F ++ +
Sbjct: 261 QGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEK 306
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 27 LKTSLDHNTYIISRF-ILTSLPISLHFTRSLFNNV--MPPLFAYNTLIRAYAKTSCSIES 83
L+ +++ N I ++F ++++ + + + R LF+ F N++I+AY +T +S
Sbjct: 2 LRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPHREDSFLCNSMIKAYLETRHYNDS 61
Query: 84 IKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+ ++ K T L PDN T+ + K+ + + G +HS I++ G +D Y+ ++
Sbjct: 62 FAFYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVD 121
Query: 143 MYAACKEIDFAKALFDEMPE 162
MYA ++ A+ +FDEMP+
Sbjct: 122 MYAKFGKMGCARNVFDEMPQ 141
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
R LF+ MP L ++NT+I Y + E+I+LF EM T L PD++T V+ A
Sbjct: 226 ARKLFD-AMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAI 284
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G H + + L + +L MY+ C EI+ AK +FDEMPE
Sbjct: 285 SDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPE 337
>gi|302798817|ref|XP_002981168.1| hypothetical protein SELMODRAFT_114142 [Selaginella moellendorffii]
gi|300151222|gb|EFJ17869.1| hypothetical protein SELMODRAFT_114142 [Selaginella moellendorffii]
Length = 463
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R++F+ + + +NTL+ AY + S E+I+L+ M G+ PD +TY +V A
Sbjct: 175 LENARAVFDRMTTRTVVTWNTLLTAYGQHGHSEEAIRLYQRMEPDGVEPDEITYVTIVGA 234
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G VH I + GL + + L+ MY C +D A+ +FD
Sbjct: 235 CGDMQSLAEGRPVHDRIVRAGLENGALLSTALVSMYGKCGSLDEARKIFD 284
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F + LFA+ +I A A+ + E+++ F + G++PD +++ ++
Sbjct: 10 GLEEAREIFERLESKGLFAWTAIIGACAQRGHNREALEFFHRLDCEGVKPDIVSFINTLR 69
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
A + G +H + GL SD +GN L+ MY+ C ++ A+ +FD
Sbjct: 70 ACTNLEDLSEGRGIHRRLSAEGLDSDVIVGNALVNMYSRCGYLEEARDVFD 120
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 27 LKTSLDHNTYIISRFIL--TSLP-ISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIE 82
L T TY SR I T P I + +TR +FN + F +N +IRAY +T+
Sbjct: 2 LLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHF 61
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+ L+ ML L DN TYP +++A VH+ + K+G SD Y+ NTL+
Sbjct: 62 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 121
Query: 143 MYAACKEIDFAKALFDE 159
++ C + A +F+E
Sbjct: 122 CFSVCSNMTDACRVFNE 138
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNT 69
+ + H +HQ+P + S+ + +I F + L + LF+ ++ + ++
Sbjct: 159 NVEEAKHIYHQMP----ERSIIASNSMIVLFGMRGLVVE---ACKLFDEMLEKDMVTWSA 211
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
LI + + E+I+ F M K G+ D + + A L++ +G +HSL K+G
Sbjct: 212 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 271
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
S + N L+ MY+ C +I A+ LFDE
Sbjct: 272 TESYINLQNALIYMYSKCGDIMVARKLFDE 301
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+++F++ MP + +++++I YA+ E++ LF EM +G +PD T V+ A
Sbjct: 326 AKAIFDS-MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACA 384
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G VH+ I + GL + +G TL+ MY C ++ A +F M E
Sbjct: 385 RLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 436
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L + +I +A+ C+ ++I LF +M +G PD TY V+ A + L+ +G
Sbjct: 11 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 70
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACK---EIDFAKALFDEMPE 162
+HS + ++GL D +G +L+ MYA C +D ++ +F++MPE
Sbjct: 71 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 117
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YN ++ YAK S E+ LF+E+ TG+ T+ ++ + +G G +H
Sbjct: 222 LVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 281
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G S++ I N L+ MY+ C I+ A +F+EM +
Sbjct: 282 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 320
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFV 105
S+ +R +F MP + ++ +I AYA++ C E+I+LF +M+ +RP++ ++ V
Sbjct: 104 SVDDSRKVFEQ-MPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 162
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+KA G V+S K+G+ S +GN+L+ MYA ++ A+ FD
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 215
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKT 77
Q+ LK N I + I + S ++ +FN + + ++ ++I +AK
Sbjct: 277 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 336
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ ++++F +ML+TG +P+ +TY V+ A +I G
Sbjct: 337 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 377
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI +YAK ++K+F EM +G+ P LT V+ A + + +G VH +
Sbjct: 255 SWNSLIGSYAKLGQCARALKVFREMQDSGVEPTELTLVSVLGACTEIGELELGKGVHGYL 314
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+ +D Y+GN L+ MYA C ++ A+ +F+ M
Sbjct: 315 SSKGVLADGYVGNALVDMYAKCGSLELARQVFESM 349
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLF-----NNVMPPLFAYNTLIRAY 74
HQL A+ +K L H+ + R +L+ LP S T +L ++ PPL Y+ I A
Sbjct: 32 HQLHAVLIKHGLLHHPASL-RALLSRLPPSSASTLALLLSAAPCSLSPPL--YSPAIAAL 88
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL------------LIGVGGSVH 122
A + S+ +F+ + + L +P ++K+ + + G +H
Sbjct: 89 ASSPYPAASLAVFNRVSRLSLPIPLPAFPALLKSCARAFNLCAAADGGGEGFVSKGMELH 148
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K+G +D+Y+ N L+ MY + A+ +FD MP
Sbjct: 149 GCVLKLGCGADRYVQNALVSMYGKLGRLGDARKVFDGMP 187
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
Q+ A +T + N ++ S + + S S+ ++F +M + ++ +I Y +
Sbjct: 298 QIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNG 357
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
C E++++F EM + G++PD+ T V+ + + G H L GL + N
Sbjct: 358 CGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSN 417
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ +Y C I+ A LFDEM
Sbjct: 418 ALVTLYGKCGSIEDAHRLFDEM 439
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 45/94 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ T++ + E++ +F M G+ D T+ ++ A + G +H+ I
Sbjct: 245 WTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 304
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++G+ L+ MY+ C+ + A+A+F M
Sbjct: 305 RTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRM 338
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLK--TGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+YN L+ +++ + + +L+ G+RP +T VV + +G VH
Sbjct: 110 SYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHC 169
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I ++G + + G+ L+ MYA I A+ +FDEM
Sbjct: 170 QILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM 206
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS-VHSL 124
++ L+ YA+ + E+I LF++ML G++PD +T+ V+ A + L+ G S HS+
Sbjct: 446 SWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSM 505
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L + +I +A+ C+ ++I LF +M +G PD TY V+ A + L+ +G
Sbjct: 16 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 75
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACK---EIDFAKALFDEMPE 162
+HS + ++GL D +G +L+ MYA C +D ++ +F++MPE
Sbjct: 76 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 122
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YN ++ YAK S E+ LF+E+ TG+ T+ ++ + +G G +H
Sbjct: 227 LVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 286
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G S++ I N L+ MY+ C I+ A +F+EM +
Sbjct: 287 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 325
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFV 105
S+ +R +F MP + ++ +I AYA++ C E+I+LF +M+ +RP++ ++ V
Sbjct: 109 SVDDSRKVFEQ-MPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 167
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+KA G V+S K+G+ S +GN+L+ MYA ++ A+ FD
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 220
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKT 77
Q+ LK N I + I + S ++ +FN + + ++ ++I +AK
Sbjct: 282 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 341
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ ++++F +ML+TG +P+ +TY V+ A +I G
Sbjct: 342 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 382
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS--LHFTRSLFNNVMPP--LFAY 67
+S +H AL L T + H ++T + L R LF+ MP + +
Sbjct: 234 ISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDE-MPERNVVTW 292
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
T++ Y K S S+ LF ML +G+RP+ +T+ + A + G VH +I K
Sbjct: 293 TTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICK 352
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
D ++G+ L+ +YA C E+ A+ LFD
Sbjct: 353 TAFQVDTFVGSALMNVYAKCGEVGLARKLFD 383
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
Q+ + KT+ +T++ S + + + + R LF+ + L ++N +I AYA
Sbjct: 345 QVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHG 404
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
IE+I L+++M G RP+++TY ++ A L+ G
Sbjct: 405 VGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEG 444
>gi|255542868|ref|XP_002512497.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548458|gb|EEF49949.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 459
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-----LTSLPISLHFTRSL 56
I R+I L+ T Q+ A FL+ LD +I++ FI +P + R
Sbjct: 166 IERKILKLLHGHNTRTQLRQIHAHFLRHGLDQLNHILAHFISVCGSENKMPYA---NRVF 222
Query: 57 FNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+V P + +N +++ Y+ ES+ F M + G+ PD T+ ++KA +
Sbjct: 223 LQSVNPNILPFNAMVKGYSLCGPFEESLSFFSSMKRRGIWPDEYTFAPLLKACSSLYDLK 282
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +H + +G I ++ +YA C ++ +K +FDEM E
Sbjct: 283 LGQCIHKDVIMIGFECFCSIQIGVVELYANCGLLEDSKKVFDEMRE 328
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A++ E+++LF EM G +PD T V+ + + VG + S
Sbjct: 364 SWNIMISCLAQSGRDSEALRLFHEMQDEGFKPDEATVVTVLPICARLEAVSVGQWIQSYA 423
Query: 126 FKVGLHSD-KYIGNTLLRMYAACKEIDFAK 154
GL+ D +GN L+ Y+ C ++ A+
Sbjct: 424 ESTGLYGDFVSVGNALVDFYSKCGMLETAR 453
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI--SLHFTRSLFNNVMP-PLFAYNTLIRAYAKT 77
++ A +K+ L+ N IS + + SL R +FN + L ++ +L+ AY++
Sbjct: 396 KVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQC 455
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S ++I++F M G+ P+ T+ V+ + L+ G VH +I KVGL DK I
Sbjct: 456 SEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIE 515
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
+ L+ MYA C + AK +F+ +
Sbjct: 516 SALVDMYAKCGCLGDAKKVFNRIS 539
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN--VMP 62
+ I + + + ++ L+ +D NT + + I + S SL RS+FN+ +
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337
Query: 63 PLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
A +N +I Y ++ + ++++LF +M + + D+ TY V A + +G V
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV 397
Query: 122 HSLIFKVGLHSDKY-IGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ K GL + I N + YA C ++ + +F+ M +
Sbjct: 398 HARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMED 439
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F++ LI A+ ++ + F EM G+ PD Y +++ I +G VH+
Sbjct: 137 FSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQ 196
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G S ++ LL MYA +EI+ + +F+ M E
Sbjct: 197 IVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSI 81
A +KTSL+ + ++++FI L S + P +F YN L + + S I
Sbjct: 49 AAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPI 108
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
S++L+ ML+ + P + TY +VKAS G H F G H I TL+
Sbjct: 109 RSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVK--IQTTLI 166
Query: 142 RMYAACKEIDFAKALFDEMPE 162
Y+A I A+ +FDEMPE
Sbjct: 167 DFYSATGRIREARKVFDEMPE 187
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L SLFN + + + ++ T+I+ Y++ E+I +F +M++ G+ PD +T V+
Sbjct: 236 NLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVIS 295
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A ++ +G VH + G D YIG+ L+ MY+ C ++ A +F +P+
Sbjct: 296 ACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK 350
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI--SLHFTRSLFNNVMP-PLFAYNTLIRAYAKT 77
++ A +K+ L+ N IS + + SL R +FN + L ++ +L+ AY++
Sbjct: 396 KVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQC 455
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S ++I++F M G+ P+ T+ V+ + L+ G VH +I KVGL DK I
Sbjct: 456 SEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIE 515
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
+ L+ MYA C + AK +F+ +
Sbjct: 516 SALVDMYAKCGCLGDAKKVFNRIS 539
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F++ LI A+ ++ + F EM G+ PD Y +++ I +G VH+
Sbjct: 137 FSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQ 196
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G S ++ LL MYA +EI+ + +F+ M E
Sbjct: 197 IVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN--VMP 62
+ I + + + ++ L+ +D NT + + I + S SL RS+FN+ +
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337
Query: 63 PLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
A +N +I Y ++ + ++++LF +M + + D+ TY V A + +G V
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV 397
Query: 122 HSLIFKVGLHSDKY-IGNTLLRMYAACKEIDFAKALFDEMPE 162
H+ K GL + I N + YA C ++ + +F+ M +
Sbjct: 398 HARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMED 439
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQ 111
R LFN V P LF +N LIR ++ SI L+ + K T LRPDN TY F + A+ +
Sbjct: 66 RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASR 125
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VG +H+ G+ S+ ++G+ ++ +Y + A+ +FD MPE
Sbjct: 126 LEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPE 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ F R LF+ L ++N +I Y + + +I LF EM+ L P+ +T ++ A
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSA 424
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q + +G VH LI L S+ Y+ L+ MYA C I A+ LFD M
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 37 IISRFILTSLPISLHF-------TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLF 87
+ S + S + L+F R +F+ VMP +NT+I +++ S +SI++F
Sbjct: 144 VASNLFVGSAIVDLYFKFTRAELARKVFD-VMPERDTVLWNTMISGFSRNSYFEDSIRVF 202
Query: 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+ML GL D+ T V+ A + +G + L K GLHSD Y+ L+ +Y+ C
Sbjct: 203 VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKC 262
Query: 148 KEIDFAKALFDEMPE 162
+ + LFD++ +
Sbjct: 263 GKSCKGRILFDQIDQ 277
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ + P L +YN +I Y + ++ LF E+L +G R ++ T ++
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +L K+G+ + L +Y E+ FA+ LFDE PE
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 31 LDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFD 88
L+ N Y+ + + + + S+ R LF+ V + +N +I Y E++KLF
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFY 505
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV-HSLIFKVGLH 131
EML++G+ P +T+ ++ A L+ G + HS+ G
Sbjct: 506 EMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549
>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g52630
gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
Length = 588
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+A+ S++ +M+ LRPD+ P K+ +G SVH L K G +D
Sbjct: 91 FAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDAD 150
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++G++L+ MYA C EI +A+ +FDEMP+
Sbjct: 151 VFVGSSLVDMYAKCGEIVYARKMFDEMPQ 179
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSI 81
L +KT D + ++ S + + + + + R +F+ MP + ++ ++ YA+ +
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDE-MPQRNVVTWSGMMYGYAQMGENE 199
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E++ LF E L L ++ ++ V+ L+ +G +H L K S ++G++L+
Sbjct: 200 EALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLV 259
Query: 142 RMYAACKEIDFAKALFDEMP 161
+Y+ C + A +F+E+P
Sbjct: 260 SLYSKCGVPEGAYQVFNEVP 279
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+FN V + L +N +++AYA+ S + + I+LF M +G++P+ +T+ V+ A L
Sbjct: 274 VFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGL 333
Query: 115 IGVG 118
+ G
Sbjct: 334 VDEG 337
>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 31 LDHNTYIISRFILTSL------PISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIES 83
++++ ++ S F+L +L S+ R +F+N+ +F + ++ YA+ E+
Sbjct: 1 MENSGFVPSTFVLNALLNMYMKCGSITDARQVFDNMRERDMFTWTMMLTGYARLGHLEEA 60
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+++++ML+ L D +T+ ++ + G VH + K G+HSD+ +GNTL+ M
Sbjct: 61 YRVYEQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDM 120
Query: 144 YAACKEIDFAKALFDEMPE 162
YA C I +F EM +
Sbjct: 121 YAKCGNIRQGHTMFTEMKD 139
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I A+ E+ +LF+ M + GL+PD +TY V+ C + G +HS I
Sbjct: 145 WNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNV---CSSLEQGRILHSYII 201
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL D ++G LL MY+ C+ ++ A +F+++PE
Sbjct: 202 EAGLELDLWVGTALLNMYSNCRSLEDALQIFEKLPE 237
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGS 120
L + ++I AYA+ ++ +++MLK G+ D Y V+ C +G G
Sbjct: 240 LVTWTSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHV---CATMGDLEKGKQ 296
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH + K G+ +D+ + +TL+ MYA C D A L + M E
Sbjct: 297 VHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMDE 338
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +Y LI + + E+++ F M + G+ P+ +T+ V+KA + G +H+
Sbjct: 341 VVSYTALIVGHVRQGRFQEALQTFSSMQRDGVLPNTVTFVGVLKACTGLGSLVEGRRIHA 400
Query: 124 LIFKVGLHSDKYIGNTLLRMYAAC 147
I K GL D + L MYA C
Sbjct: 401 SIIKAGLAQDSSLKYALADMYAKC 424
>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
Length = 744
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ ++ + ++ ++ +A+ C E++KLF +M G +P+N T+ V KA
Sbjct: 194 REVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGL 253
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VG SVH K D Y+G LL +Y +ID A+ F+E+P+
Sbjct: 254 EAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPK 303
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 56/95 (58%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I YA++ S E++++F +M + + P+ T+ V++A + +G +H +
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K+GLHSD ++ N L+ +YA C ++ + LF E P
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMELFAESP 403
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
++ TLI+ YA++ +E+I+LF + + G L P T + S C +G G +H+
Sbjct: 106 SFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG--IHA 163
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
IFK+G S+ ++G L+ Y+ C +D A+ +FD
Sbjct: 164 CIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFD 198
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQ 111
R LFN V P LF +N LIR ++ SI L+ + K T LRPDN TY F + A+ +
Sbjct: 66 RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASR 125
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VG +H+ G+ S+ ++G+ ++ +Y + A+ +FD MPE
Sbjct: 126 LEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPE 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ F R LF+ L ++N +I Y + + +I LF EM+ L P+ +T ++ A
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSA 424
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q + +G VH LI L S+ Y+ L+ MYA C I A+ LFD M
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 37 IISRFILTSLPISLHF-------TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLF 87
+ S + S + L+F R +F+ VMP +NT+I +++ S +SI++F
Sbjct: 144 VASNLFVGSAIVDLYFKFTRAELARKVFD-VMPERDTVLWNTMISGFSRNSYFEDSIRVF 202
Query: 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+ML GL D+ T V+ A + +G + L K GLHSD Y+ L+ +Y+ C
Sbjct: 203 VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKC 262
Query: 148 KEIDFAKALFDEMPE 162
+ + LFD++ +
Sbjct: 263 GKSCKGRILFDQIDQ 277
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ + P L +YN +I Y + ++ LF E+L +G R ++ T ++
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +L K+G+ + L +Y E+ FA+ LFDE PE
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 31 LDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFD 88
L+ N Y+ + + + + S+ R LF+ V + +N +I Y E++KLF
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFY 505
Query: 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV-HSLIFKVGLH 131
EML++G+ P +T+ ++ A L+ G + HS+ G
Sbjct: 506 EMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISL-HFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A ++ L +Y++++ I LT + + + + +F V P F + +IR YA
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS-LIFKVGLHSDKY 135
ES + M + G+ P + T+ + KA L + +G VH+ I G SD Y
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+GN+++ +Y C + A+ +FDEM E
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSE 206
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F+Y+++I YA + +++LF +MLKT +RP+ +T+ ++ A L+ G + +
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402
Query: 124 LI---FKVGLHSDKYIGNTLLRMYAACKE--IDFAKAL 156
+ F V D Y L A C E +D K +
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTM 440
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI Y K ++++++F EM +G+ P LT V+ A + + +G VH I
Sbjct: 255 SWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYI 314
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+ +D Y+GN L+ MYA C ++ A+ LF+ M
Sbjct: 315 GSKGVVADGYVGNALVDMYAKCGSLELARQLFESM 349
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLF-----NNVMPPLFAYNTLIRAY 74
HQL A+ K L H+ + R +L+ LP S T +L + + PPL Y+ I A
Sbjct: 32 HQLHAVLFKHGLLHHPAFL-RALLSRLPPSSASTLALLLSAAPSALSPPL--YSPAISAL 88
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL------------LIGVGGSVH 122
A + C S+ +F+ + + L +P ++K+ + + G +H
Sbjct: 89 ASSPCPAASLAVFNRVSRLSLPTPLPAFPALLKSCARAFGLCAAADGGGEGFVSKGMELH 148
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ K+G D+Y+ N L+ MY + A+ +FD MP
Sbjct: 149 GRVLKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGMP 187
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLF-NNVM 61
+ L L+ T+H H Q A + + L + + ++R + L+ L +++F +
Sbjct: 18 QALTALTATSHLH-QAHAHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTIFLHTHN 76
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +NT+I A ++T ++S+ + ML G PDN T+PF++K+S +G +
Sbjct: 77 PSPFMFNTIIMASSRT---LDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQL 133
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
H+ + K GL D ++ N ++ +Y++ +E+ A+ +FDE
Sbjct: 134 HAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDE 171
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 53 TRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLR--PDNLTYPFVVKA 108
R LF+ MP A ++ ++ Y++ E++ LF EM+ TG + P+ V A
Sbjct: 228 ARKLFDE-MPDRDAASWSAMVSGYSQLGMCNEALDLFMEMV-TGDKMIPNEAALVSAVSA 285
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + G +HS I + L + +G LL MY C I A +F+ M E
Sbjct: 286 CAQLXALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSE 339
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 38 ISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
+SR + T +LFN + +F++N++I A++ S E++ F M K L
Sbjct: 13 VSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSL 72
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
P ++P +KA I G H F G SD ++ + L+ MY+ C +++ A+
Sbjct: 73 YPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK 132
Query: 156 LFDEMPE 162
+FDE+P+
Sbjct: 133 VFDEIPK 139
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQ 111
R +F+ ++ +YN+++ YA++ S E+ ++F ++K + N +T V+ A
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H + ++GL D +G +++ MY C ++ A+ FD M
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM 348
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML------KTGLRPDNLTYPFVVKASDQCLLIGV 117
+ ++ ++IR Y +++++ LF ++L + D++ V+ A + G+
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE--IDFAKALFDEM 160
S+HS + K G +GNTLL YA E + A+ +FD++
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI 246
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 38 ISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
+SR + T +LFN + +F++N++I A++ S E++ F M K L
Sbjct: 13 VSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSL 72
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
P ++P +KA I G H F G SD ++ + L+ MY+ C +++ A+
Sbjct: 73 YPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK 132
Query: 156 LFDEMPE 162
+FDE+P+
Sbjct: 133 VFDEIPK 139
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQ 111
R +F+ ++ +YN+++ YA++ S E+ ++F ++K + N +T V+ A
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H + ++GL D +G +++ MY C ++ A+ FD M
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM 348
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML------KTGLRPDNLTYPFVVKASDQCLLIGV 117
+ ++ ++IR Y +++++ LF ++L + D++ V+ A + G+
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE--IDFAKALFDEM 160
S+HS + K G +GNTLL YA E + A+ +FD++
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI 246
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP----- 63
L+ S T Q A LK+ L N+ +++R S + L ++ P
Sbjct: 28 LLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDPLVAALLRPSVPLD 87
Query: 64 LFAYNTLIRAYAKT---SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI----G 116
F NTLIRA+A + S + + F ML+ + P+ T+PF++KA C +
Sbjct: 88 AFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKA---CAALPGSPD 144
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF---AKALFDEMPE 162
VG H+ K G +D+Y+ NTL+ MY +C F A+ +FD MP+
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPK 192
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R++F+ MP A ++ +I Y + S ++++LF EM G++ D +T V+ A+
Sbjct: 184 RNVFDR-MPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATD 242
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + V + + G+ + N L+ A C ++D A A+F+ M +
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQ 293
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 27 LKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIES 83
LK D + +++ FI + S+++ + LF+ MP L ++N ++ YA+ +
Sbjct: 170 LKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDE-MPVKGLISWNAMVSGYAQNGLATNV 228
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV---GLHSDKYIGNTL 140
++L+ M G+ PD +T +V C +G H + FK+ G S+ ++ N L
Sbjct: 229 LELYRNMDMNGVHPDPVT---LVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNAL 285
Query: 141 LRMYAACKEIDFAKALFDEMPE 162
+ MYA C + A+A+FD MPE
Sbjct: 286 INMYARCGNLTKAQAVFDGMPE 307
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPPL----------FAYNTLIRAYAKTSCSIESIKL 86
+ F+ T L IS++ SL +N YN L+ Y S +++ L
Sbjct: 72 VFEPFVQTGL-ISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLL 130
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
F +M + G+ +++T ++ A + + +G S+H K G SD + N + MY
Sbjct: 131 FRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMK 190
Query: 147 CKEIDFAKALFDEMP 161
C +++A+ LFDEMP
Sbjct: 191 CGSVNYAQKLFDEMP 205
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NT +R AK ++++ L+ +ML+ G RP+ T+PF +K+ L +G H I
Sbjct: 8 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
KVG + ++ L+ MY +D A+ +F+E
Sbjct: 68 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEE 100
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 62 PPLFAYNTLIRAYAKTSC-SIESIKLFDEML---KTGLRPDNLTYPFVVKASDQCLLIGV 117
P F +N LI++Y+K++ ++I L+ ++ + L PD TYPFV+KA +
Sbjct: 44 PNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFE 103
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH+ + K+G D YI N+L+ YA+C ++ A+ +FD M E
Sbjct: 104 GKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCE 148
>gi|242042081|ref|XP_002468435.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
gi|241922289|gb|EER95433.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
Length = 506
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG-VGGSVHS 123
F YNTLIR +A +S I+LF M + G PD T+ FV+K+ +C G + +H+
Sbjct: 83 FFYNTLIRGFAVSSSPSAGIELFTAMRRAGAAPDAFTFTFVLKSCSRCHSPGRLPSDLHA 142
Query: 124 LIFKVGLHSDK----YIGNTLLRMYAACKEIDFAKALFDEMP 161
FK G S + ++ N LL YA+ +D A +FDEMP
Sbjct: 143 QAFKHGCLSARSEHVHVHNALLHAYASRSAVDDAHRVFDEMP 184
Score = 39.7 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP + ++ +I AYA+ S +++ LFD M ++PD +T VV
Sbjct: 204 LDSARMVFDQ-MPHRDVVSWTAMISAYARASRPQDALALFDAM---PVQPDEVTMVSVVS 259
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G + + G + N L+ MYA C + A+ LFD M
Sbjct: 260 ACTALGDLATGERLRLYVDSNGFGWMVSLRNALMDMYAKCGCLPEARELFDGM 312
>gi|255547321|ref|XP_002514718.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546322|gb|EEF47824.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 399
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLH-FTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A L L Y+I++ + LT+L I + + RS+FN V P F Y+ +IR Y+
Sbjct: 58 QVHAHILSNGLAQCCYVITKLVRTLTNLNIPMDPYPRSIFNQVKFPNPFLYSAVIRGYSI 117
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL-IFKVGLHSDKY 135
ES+K++ M + P + T+ + KA + +G +H+ I G SD +
Sbjct: 118 EGILSESVKVYSFMRMEHVGPVSFTFSAIFKACGAVGDLHLGRQMHAQSILIGGFCSDLF 177
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ NTL+ MY C ++ + +F+ MPE
Sbjct: 178 VSNTLIDMYIKCGVLECGRKVFNAMPE 204
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISL-HFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A ++ L +Y++++ I LT + + + + +F V P F + +IR YA
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS-LIFKVGLHSDKY 135
ES + M + G+ P + T+ + KA L + +G VH+ I G SD Y
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+GN+++ +Y C + A+ +FDEM E
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSE 206
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F+Y+++I YA + +++LF +MLKT +RP+ +T+ ++ A L+ G + +
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402
Query: 124 LI---FKVGLHSDKYIGNTLLRMYAACKE--IDFAKAL 156
+ F V D Y L A C E +D K +
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTM 440
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 21 QLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV--MPPLFAYNTLIRAYA 75
Q+ A KT T IS F + +L + + +F+++ P + +N ++R YA
Sbjct: 28 QIHAQMFKTGSVLETITISELQAFAASPNSGNLTYAKIVFDSLSSRPNTYIWNAMLRGYA 87
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
++ E++ L+ +ML + + T+PF++KA I VH+ I K+G SD Y
Sbjct: 88 DSNKPEEALILYHQMLCHSVPHNGYTFPFLLKACSSLSAIEKAQQVHAQIIKLGFGSDVY 147
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
N+LL YAA I+ A+ +FD +P
Sbjct: 148 TTNSLLHAYAASGFIESARIIFDRIP 173
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I + + E++ LF EM G++PD + V+ A + G +H+ I
Sbjct: 210 SFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYI 269
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
K + D +G L MYA C + A +F +
Sbjct: 270 KKNDVQIDPMLGCALTDMYAKCGSMQDALEVFKK 303
>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
Length = 781
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +N +IR +A ++ + ML+ G RPD T+P VVK + + G +
Sbjct: 70 PDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAA 129
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H ++ K+GL D Y N+L+ YA ++ A+ +FD MP
Sbjct: 130 HGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMP 169
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSI 81
+ +K L+H+ Y + + + L + MP + +NT++ Y
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGS 190
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV--GGSVHSLIFKVGLHSDKYIGNT 139
++ F EM L + + + + CL + G +H + + GL D +G +
Sbjct: 191 LALACFQEM-HDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTS 249
Query: 140 LLRMYAACKEIDFAKALFDEMP 161
LL MY C E+ +A+++F MP
Sbjct: 250 LLDMYCKCGEVAYARSVFATMP 271
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
L ++N +I AY E+I LF E+L L PD T VV A +L+G
Sbjct: 376 LVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAF---VLLGSLRHCRQ 432
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+HS I +G + I N +L MYA ++ ++ +FD+M
Sbjct: 433 IHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM 472
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAY 67
+ + K H H L+ + N YI + + L + S++ R LF+ + ++
Sbjct: 44 LAVGKQVHEH------ILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSW 97
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +I YA + E+ LF M + L PD T+ ++ A ++ G +H + +
Sbjct: 98 NVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVME 157
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
GL +D +GN L+ MYA C + A+ +FD M
Sbjct: 158 AGLANDTTVGNALISMYAKCGSVRDARRVFDAM 190
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+NT+IR + + E+ F ML+ G+ PD TY V+ A + + G +H+
Sbjct: 296 VIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHA 355
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL SD GN L+ MY+ + A+ +FD MP+
Sbjct: 356 RAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPK 394
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ R +F+ MP + ++ TL+ YA +ES F +ML+ G++ + +TY V+
Sbjct: 381 SMKDARQVFDR-MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVL 439
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KA + + G +H+ + K GL +D + N L+ MY C ++ A +F+ M
Sbjct: 440 KACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM 493
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ TL AYA++ ES+K + ML+ +RP +TY V+ A + G +H+ I
Sbjct: 197 SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHI 256
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ HSD + L +MY C A+ +F+
Sbjct: 257 VESEYHSDVRVSTALTKMYMKCGAFKDAREVFE 289
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
VKA D + VG VH I + G+ + YI NTLL++YA C ++ A+ LFD+
Sbjct: 39 VKAKD----LAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDK 88
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-------------PISL 50
RQ ++L QL + H H + L L H++ +++ ILT+ P +L
Sbjct: 23 RQCKSLKQLHQV--HAHTITTGLL-WGLHHSSLLLTN-ILTAFTALLPTTNASPTTPAAL 78
Query: 51 -HFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ S+FN + P F YNT+IRA+ S + ++ +F M + + PD T+PF +KA
Sbjct: 79 TGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKA 138
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ + ++HS FK G +D ++ NTL+ +Y+ K + A +F+E
Sbjct: 139 CSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNE 189
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSL-DHNTY--IISRFILTSLPISLHFTRSLFNNVMP- 62
TLI + H H +F +TSL D +Y +I FI R LF+ MP
Sbjct: 168 NTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGFIKVG---DTDRARRLFDK-MPI 223
Query: 63 -PLFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
++ TL+ YA++ +++I+LF+ ML + +RPDN+ + A Q + G S
Sbjct: 224 RDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKS 283
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H I + + + ++ L+ +YA C I+ A+ +F+ P+
Sbjct: 284 IHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPD 325
>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
Length = 781
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +N +IR +A ++ + ML+ G RPD T+P VVK + + G +
Sbjct: 70 PDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAA 129
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H ++ K+GL D Y N+L+ YA ++ A+ +FD MP
Sbjct: 130 HGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMP 169
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
L ++N +I AY E+I LF E+L L PD T VV A +L+G
Sbjct: 376 LVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAF---VLLGSLRHCRQ 432
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+HS I +G + I N +L MYA ++ ++ +FD+M
Sbjct: 433 IHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM 472
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSI 81
+ +K L+H+ Y + + + L + MP + +N ++ Y
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGS 190
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV--GGSVHSLIFKVGLHSDKYIGNT 139
++ F EM L + + + + CL G +H + + GL D +G +
Sbjct: 191 LALACFQEM-HDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTS 249
Query: 140 LLRMYAACKEIDFAKALFDEMP 161
LL MY C E+ +A+++F MP
Sbjct: 250 LLDMYCKCGEVAYARSVFATMP 271
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 4 RQIET----LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN 58
R++E +Q K+ + ++ A + L +++++++ + L + + LFN
Sbjct: 7 REVENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFN 66
Query: 59 NVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIG 116
V P +F YN++IRAY S + I+++ ++L+ + PD T+PF+ K+ C +G
Sbjct: 67 QVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKS---CASLG 123
Query: 117 ---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G VH ++K G N L+ MY ++ A +FDEM E
Sbjct: 124 SCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSE 172
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +I Y C +E++ F EM G+ PD ++ V+ + + +G +H
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHM 265
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ GL + N L+ MY+ C + A LF++
Sbjct: 266 YAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQ 301
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + P AYN LIRAY+ +I L+ ML + P+ T+PFV+KA
Sbjct: 49 LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G ++H+ VGLH+D ++ L+ +Y C A +F +MP
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMP 161
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+Y L+ Y + + E+ +F +M ++PD T ++ A + G H +
Sbjct: 374 SYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSV 433
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
GL + I N+L+ MYA C ID ++ +FD+MP
Sbjct: 434 IIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMP 469
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTG---LRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
++ LI + E+ LF +ML G L ++ V AS L +G +H+
Sbjct: 273 WSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGT--QLHA 330
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L+ K G+H+D GN+LL MYA I+ A LFDE+
Sbjct: 331 LLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEI 367
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVMPPLFAYNTL 70
+T H H A+ L T L +T +I +I + P + F + +V+ A+N +
Sbjct: 118 GRTIHAH--AAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV----AWNAM 171
Query: 71 IRAYAKTSCSIESIK-LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+ YA +I L D + GLRP+ T ++ Q + G SVH+ +
Sbjct: 172 LAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAY 231
Query: 130 LHSDK---YIGNTLLRMYAACKEIDFAKALFDEM 160
L ++ IG LL MYA CK + +A +F M
Sbjct: 232 LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGM 265
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 55 SLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+LFN + +F++N++I A++ S+E+++ F M K L+P+ T+P +K+
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L + G H G D ++ + L+ MY+ C E+ A+ LFDE+
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 213
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVK 107
L +R +F+ + + ++N++I YA+ S ES+++F M+K G + + +T V+
Sbjct: 312 LGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLL 371
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A +G +H + K+GL S+ ++G +++ MY C +++ A+ FD M E
Sbjct: 372 ACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE 426
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEML--KTGLRPDN------L 100
L R+LF+ + + ++ ++I Y + + ++ LF E L ++G D +
Sbjct: 203 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPI 262
Query: 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+ A + + VH + K G D + NTL+ YA C E+ ++ +FD M
Sbjct: 263 AMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGM 322
Query: 161 PE 162
E
Sbjct: 323 AE 324
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDE-MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++A+N +I Y + S E I+ F ML +GL+PD T+P V+KA C + G +H
Sbjct: 117 VYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKA---CRNVTDGNKIH 173
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L K G D Y+ +L+ +Y + A+ LFDEMP
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMP 212
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKA 108
R++FN +P + ++NT+I YA+ + E+I++++ M + G + + T+ V+ A
Sbjct: 403 ARAVFN-WLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPA 461
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
Q + G +H + K GL+ D ++G +L MY C +D A +LF ++P
Sbjct: 462 CSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP 514
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL + +F+ + + L ++N++I+AY + +I LF EM + ++PD LT +
Sbjct: 297 SLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLAS 356
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
Q I SV + G D IGN ++ MYA +D A+A+F+ +P
Sbjct: 357 ILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 10/161 (6%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP 62
R ++++ + +++ L LK + Y+ + I L ++ R LF+ MP
Sbjct: 154 RTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDE-MP 212
Query: 63 --PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGG 119
+ ++N +I Y ++ + E++ L D GLR D++T ++ A + G
Sbjct: 213 TRDMGSWNAMISGYCQSGNAKEALTLSD-----GLRAMDSVTVVSLLSACTEAGDFNRGV 267
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++HS K GL S+ ++ N L+ +YA + + +FD M
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308
>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 878
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP +FA+ +I A+ K+ ++ LF+EM+ +G+ P+ T+ V+++
Sbjct: 76 ARKLFDE-MPQRTVFAWTVMISAFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRSCA 134
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GG VH + K G + +G++L +Y+ C ++ A+ LF +
Sbjct: 135 GLGDLSYGGRVHGSVLKTGFEGNSVVGSSLTDLYSKCGKLKEARELFSSL 184
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESI 84
+ LKTSL Y S F + + R L + +F + +++ + + + E++
Sbjct: 258 VVLKTSL---VYFYSHFSIMEDAV-----RVLNSTGEQDVFLWTSVVSGFVRNLRAKEAV 309
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
F EM GL P+N TY ++ + +G +HS KVG +GN L+ MY
Sbjct: 310 GTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGFEDSTDVGNALVSMY 369
Query: 145 AAC 147
C
Sbjct: 370 MKC 372
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 49 SLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ + TRS+ M Y +L+ + + ++ + + M G+R D L+ P + A
Sbjct: 480 AWNVTRSM---DMRDNITYTSLVTRFNELGKHEMALSVINHMYGDGIRMDQLSLPGFISA 536
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE--MPE 162
S G +H K G + N+L+ MY+ C ++ AK +F+E MP+
Sbjct: 537 SANLGAHETGKHLHCYSVKSGFSGAVSVLNSLVDMYSKCGSLEDAKKVFEEIAMPD 592
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 19 HHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTS 78
H Q + + S D ++S ++ S + +R + P + ++ TLI
Sbjct: 347 HSQTIKVGFEDSTDVGNALVSMYMKCSAS-EVEASRVFGAMISPNVVSWTTLILGLVDHG 405
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+ L EM+K + P+ +T V++A + + + +H + + + + +GN
Sbjct: 406 FEQDCFGLLMEMVKREVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLLRRHVDGEMIVGN 465
Query: 139 TLLRMYAACKEIDFA 153
+L+ YA+ ++D+A
Sbjct: 466 SLVDAYASSGKVDYA 480
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 55 SLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+LFN + +F++N++I A++ S+E+++ F M K L+P+ T+P +K+
Sbjct: 30 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L + G H G D ++ + L+ MY+ C E+ A+ LFDE+
Sbjct: 90 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 137
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+ ++N++I YA+ S ES+++F M+K G + + +T V+ A +G +H
Sbjct: 173 VISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIH 232
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+GL S+ ++G +++ MY C +++ A+ FD M E
Sbjct: 233 DQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE 272
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H +F + L +N++I +++ S+E+I LFD+M ++ D LT+ V++A
Sbjct: 454 VHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQA 513
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G VH + GL D Y+ L MY+ C E+ A +FD M E
Sbjct: 514 CSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSE 567
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F + LI+ Y E++ L+ EM+ + + N +P V+KA + VGG
Sbjct: 62 PDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGK 121
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
VH + K G SD + +LL MY +D A FD MP
Sbjct: 122 VHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMP 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 59 NVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ MP + A+++++ + + + E + +F +M+ + PD++T V +A + +
Sbjct: 159 DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 218
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G SVH + + + S+ + N+L+ MY ++ A+ LF+ +P
Sbjct: 219 LGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVP 263
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI + + E++ LF +M GL PD+ + + A +G +H
Sbjct: 369 ILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHG 428
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G +D ++ N L+ MYA C + A +F+++ E
Sbjct: 429 YIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKE 466
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 4 RQIETLIQLSKTAHHHHQLP--ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV 60
+QI +L+Q SK H + LP A ++ + +++ + + ++ + +F
Sbjct: 50 KQIISLLQRSK--HINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYT 107
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P ++ Y LI + + ++I+L+ ML + PDN ++KA L + G
Sbjct: 108 HNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGR 167
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS K+GL S++ + ++ +Y C E+ A+ +F+EMPE
Sbjct: 168 EVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE 210
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I + + +++ F M +RP+ T V+ A Q + +G VHS +
Sbjct: 246 WTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + ++GN L+ MY+ C ID A+ +FDEM +
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 341
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNT-L 70
L++ H H +L L +S + + +IS + T L R LF+ + P F T L
Sbjct: 45 LNQGKHLHARLIVSGLASSNNFASKLISFYTETR---QLSIVRKLFDRIPKPNFYQRTVL 101
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
I AY++ + + +F EM LRP+ P V++A + G +HS+I +
Sbjct: 102 IGAYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLF 161
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
SD + L+ MY+ C+ ++ A+ +FD M E
Sbjct: 162 ESDVVVNTALIDMYSRCRHVEKARKVFDGMQE 193
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + ++ ++I + + S + + F +ML+ G P++ T ++ A + G +
Sbjct: 264 PDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPACASLANVRHGREL 323
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H F +G+ D Y+ + ++ MY+ C I A+ LF +MPE
Sbjct: 324 HGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMPE 364
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 33 HNTYIISRFILTSLPISLHFTRSLFNNVMPPL-----FAYNTLIRAYAKTSCSIESIKLF 87
HN + S+ +++ I+L T S+ + + + +NT+IR Y + + E+I ++
Sbjct: 8 HNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILIY 67
Query: 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+ + K GL+ D T FV+KA +I G +H IFK+G + I LL MY
Sbjct: 68 NHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGLF 127
Query: 148 KEIDFAKALFDEMPE 162
E + +FDEMP+
Sbjct: 128 DEDCGLQQIFDEMPQ 142
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
M + ++ +LI Y+ +C E++ F +M +RPD +T VV + +G
Sbjct: 243 MRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEW 302
Query: 121 VHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + K GL + I N L+ M+A C I A +FD M E
Sbjct: 303 ISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEE 345
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ ++ + ++NTL+ A+ E++ +M + G RPD+ T V+ +C
Sbjct: 124 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G VH F+ G SD ++G++L+ MYA C D++ +FD +P
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLP 232
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+L+ A+ E++ +F ML+ G+RP +T+ ++ + G +H+ +
Sbjct: 239 WNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 298
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G + +I ++L+ MY C EI A +FD+M
Sbjct: 299 CGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKM 332
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 56 LFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+F+ + PP L ++N+++ +A E + +F EML+ PD T V+ A +
Sbjct: 179 VFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEI 238
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ +G VH + KVGL + + GN L+ +YA C +D A+ +F EM
Sbjct: 239 GVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEM 286
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F+ NT++R +A ++ ++ L L PD TYP +++A + L + G +
Sbjct: 88 PDPFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYGEGL 144
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+ K GL S ++ N+L+ +Y AC + A +FDE+P
Sbjct: 145 HAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIP 184
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 17/164 (10%)
Query: 8 TLIQLSKTAHHH------HQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
T ++ +K H H H P F K L+ I + SL + HF
Sbjct: 21 TTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFPN------- 73
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVK--ASDQCLLIGVG 118
P F YNTLIR+ + +S + S++ F ++L+ L PD+ ++ F +K A+D C G
Sbjct: 74 PDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSK-RQG 132
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+HS F+ G ++G TL+ MYA C ++A+ +FDEM +
Sbjct: 133 IQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQ 176
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I +AK+ ++ F E+L+ RP ++ V+ A Q G +H +
Sbjct: 219 SWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFM 278
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
K G + N L+ Y+ C +D AK +F+
Sbjct: 279 EKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN 311
>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 630
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLI 71
K A H A L N ++ +R + L +R +F +V ++ +N+LI
Sbjct: 45 KLAQQSH---AQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLI 101
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
Y K +++ LF EM + G+ PD+ T V K + + G +H ++G
Sbjct: 102 NGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFV 161
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
SD +GN+L+ MY C E A +FDE P
Sbjct: 162 SDVVVGNSLMSMYCRCGEFGDAVKVFDETP 191
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQC-LLIGV--GG 119
++ + +I Y + +++ L M +K G+RP+ ++ ++ A C LL G+ G
Sbjct: 306 VYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVS---LISALPACGLLAGLIGGK 362
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+H K+ L+ D + N L+ MY+ C +D+A+ F+
Sbjct: 363 QIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFE 401
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLF--NNVMPPLFAYNTLIRAYAKT 77
Q+ +K L+ + + + I + S SL + R F ++ ++++I AY
Sbjct: 363 QIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLH 422
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH-SLIFKVGLHSDKYI 136
E+I + +ML+ G +PD +T V+ A + L+ G S++ SL+ K + I
Sbjct: 423 GRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDEGISIYKSLMTKYEIKPTVEI 482
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
++ M ++D A EMP
Sbjct: 483 CACVVDMLGRSGQLDQALEFIKEMP 507
>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
Length = 778
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI---GVGGSV 121
F +N+L RA A + E++++++ M+++G+RPD+ T+PF + A+ G +
Sbjct: 81 FLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAEL 140
Query: 122 HSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+ + G L +D + GNTL+ YA C A+ +FDEMP
Sbjct: 141 HAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMP 181
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L+ R +F+ +YNTLI Y+++ C ES+ LF +M G+ D +++ + A
Sbjct: 473 LNLARYIFDRSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSAC 532
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H ++ K L S ++ N+LL +Y +D A +F+ + +
Sbjct: 533 SNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQ 585
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 55 SLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
++F N+ + + ++N +I + E+ +L EM K G P++ T ++ A +
Sbjct: 377 AIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVA 436
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ +G +H+ + L SD ++ N L+ +YA C +++ A+ +FD
Sbjct: 437 SVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFD 481
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 31/134 (23%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEM----------------------------- 90
++ +FA NTL+ YA + ++ ++FDEM
Sbjct: 150 LLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVV 209
Query: 91 --LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
+++G+ + + ++ A G G VH L+ K GL+S +GN L+ MY
Sbjct: 210 GMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFG 269
Query: 149 EIDFAKALFDEMPE 162
+++ + +F+ M E
Sbjct: 270 DLESSMHVFNGMQE 283
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI----LTSLPISLHFTRSLF-NNVM 61
+ L L+ T+H H Q A + + L + + ++R + L+ L +++F +
Sbjct: 16 QALTALTATSHLH-QAHAHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTIFLHTHN 74
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +NT+I A ++T ++S+ + ML G PDN T+PF++K+S +G +
Sbjct: 75 PSPFMFNTIIMASSRT---LDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQL 131
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
H+ + K GL D ++ N ++ +Y++ +E+ A+ +FDE
Sbjct: 132 HAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDE 169
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESI 84
LK ++ N +IS + +S ++ R LF+ MP A ++ ++ Y++ E++
Sbjct: 204 LKNTVSWNA-MISGYAGSS---RINEARKLFDE-MPDRDAASWSAMVSGYSQLGMCNEAL 258
Query: 85 KLFDEMLKTGLR--PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
LF EM+ TG + P+ V A Q + G +HS I + L + +G LL
Sbjct: 259 DLFMEMV-TGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLD 317
Query: 143 MYAACKEIDFAKALFDEMPE 162
MY C I A +F+ M E
Sbjct: 318 MYGKCGSILDAAGVFNLMSE 337
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESI 84
LK NT+I + I S+ + R +F+ + + ++ +I +YA+ C E++
Sbjct: 73 LKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEAL 132
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+ F +M G +P+N T+ V+KA G +VH + K D Y+G LL +Y
Sbjct: 133 EFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELY 192
Query: 145 AACKEIDFAKALFDEMPE 162
C + D A F +MP+
Sbjct: 193 TRCGDNDDAWRAFGDMPK 210
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT-----SLPISLHFTRSLF 57
S IE+L LSKT H H LK L + ++ + + + S+ +L
Sbjct: 258 SADIESL-DLSKTIHGHA------LKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALS 310
Query: 58 --NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
N+V ++NT+I +Y + ++ LF ML+ ++ +TY +++A +
Sbjct: 311 DRNDV-----SWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAAL 365
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+G VH L K D +GN L+ MYA C I A+ +FD
Sbjct: 366 ELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFD 408
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
N+V+P ++ +I +A++ S +++++F +M + + P+ T+ V++AS + +
Sbjct: 211 NDVIP----WSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDL 266
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++H K GL +D ++ N L+ YA C I+ + LF+ + +
Sbjct: 267 SKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSD 311
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ TLI YA+++ IE+ +LF + G + + V+K +G VH +
Sbjct: 13 SFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCV 72
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KVG S+ +IG L+ Y+ + A+ +FDE+
Sbjct: 73 LKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEI 107
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI Y + ++E++K+F ML++ + PD +T V+ A I VG VH+ +
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279
Query: 126 FKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K+ L +D + N + MYA C I A+ +FD MP
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ +A+ E++ F M K G + T+ + A + G +HSLI
Sbjct: 120 WNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIA 179
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K SD YIG+ L+ MY+ C ++ A+ +FDEM
Sbjct: 180 KSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEM 213
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 32/152 (21%)
Query: 39 SRFILTSLPIS----------------------LHFTRSLFNNVMPPLFAYNTLIRAYAK 76
+RFI S+PI L FT+ NV+ ++N LI Y +
Sbjct: 308 ARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVV----SWNALIAGYTQ 363
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC--LLIGVGGSVHSLI----FKVGL 130
+ E++ LF + + + P + T+ ++KA L +G+ VH L F+ G
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGE 423
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D ++GN+L+ MY C ++ +F +M E
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKMME 455
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 100 LTYPFVVKASDQCLLIGVGG----SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
++ PF K D C+ + + VH+ + K G ++ +I N L+ YA C ++ +
Sbjct: 18 VSSPFA-KLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQ 76
Query: 156 LFDEMPE 162
LFD+MP+
Sbjct: 77 LFDKMPQ 83
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I +A+ E+++LF EML +G +PD++T V+ A + G S +
Sbjct: 460 SWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSM 519
Query: 126 ---FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
F V D Y ++ + ++ AK++ +EMP
Sbjct: 520 TRDFGVAPLRDHY--TCMVDLLGRAGFLEEAKSIIEEMP 556
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV 60
+ R+ L+Q +T Q+ AL L+ ++D N I+++FI T +S R LF+N
Sbjct: 1 MERECLFLLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNR 60
Query: 61 --MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGV 117
F N++I+++ ++ L+ ++ + T PDN T+ + K + +
Sbjct: 61 SHRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWE 120
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G H + K+G D Y+ L+ MYA + A+ +F++MP+
Sbjct: 121 GLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPD 165
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASD 110
R LF+ MP L ++N +I Y + E++KLF E+ T P+ +T ++ A
Sbjct: 250 RFLFD-AMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIA 308
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G VH + + L + + +L+ MY C EI A+ +F E+P+
Sbjct: 309 TLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPK 360
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N LI +A + E+++ F EM + G++P+++T V+ A L+ G +
Sbjct: 366 WNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMI 425
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ GL L+ + +D A+ L MP
Sbjct: 426 ESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMP 460
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 4 RQIETLIQLSKTAHHHHQLP--ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV 60
+QI +L+Q S+ H + LP A ++ + +++ + + ++ + +F
Sbjct: 50 KQIISLLQRSR--HINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYT 107
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P ++ Y LI + + +E+I+L+ ML + PDN ++KA L + G
Sbjct: 108 HNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGR 167
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS K+G S++ + ++ +Y C E+ A+ +F+EMPE
Sbjct: 168 EVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE 210
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I + + + +++ F M +RP+ T V+ A Q + +G VHS +
Sbjct: 246 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + ++GN L+ MY+ C ID A+ +FDEM +
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 341
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H +F + L +N++I +++ S+E+I LFD+M ++ D LT+ V++A
Sbjct: 651 VHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQA 710
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G VH + GL D Y+ L MY+ C E+ A +FD M E
Sbjct: 711 CSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSE 764
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI + + E++ LF +M GL PD+ + + A +G +H
Sbjct: 566 ILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHG 625
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G +D ++ N L+ MYA C + A +F+++ E
Sbjct: 626 YIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKE 663
>gi|357146631|ref|XP_003574060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 735
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 46 LPISLH-FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
L +LH F V P + ++N +I + S E++ +F EM +T + PD +T
Sbjct: 26 LGAALHLFDEMRLRGVKPRVSSWNCIISGCVQNSRYDEALGIFQEMCETEM-PDAVTVAS 84
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ A + +G+G +HS + + G+ + YIG++L+ MY+ C++ +A+++F + E
Sbjct: 85 ILPACTGLMALGIGKQLHSYVVRCGIKLNVYIGSSLIGMYSECRQFAYARSVFSAIDE 142
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N+L+ AY ++KLF EMLK+ L P+ +T V+ +S + + G +H
Sbjct: 330 VVTWNSLLAAYKHNRKPEVALKLFYEMLKSDLLPNLVTMHIVLLSSGMTMALRYGRELHG 389
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I K G + D + L+ MY C +ID A+ +F+
Sbjct: 390 YINKNWFGGYPDT-LATALIDMYGKCGKIDDARLVFE 425
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI Y K +++ +F EM + G++P LT V+ A + + +G ++H +
Sbjct: 111 SWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNL 170
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+ +D +GN L+ MYA C +D AK +FD M
Sbjct: 171 QNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRM 205
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K+G D+Y+ N L+ MY + A+ FDEMP+
Sbjct: 2 ELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPD 44
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSL--PISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A L+T L + + S+ + SL SL + R +F+ + P + N++IR
Sbjct: 6 QIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTD 65
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+ E++ + EM+ GL PD T+P + K+ C G +H K+G SD Y
Sbjct: 66 KNLHQEALLFYQEMMVQGLIPDRYTFPSLFKS---CRNSSEGKQIHCHSTKLGFASDTYA 122
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
NTL+ MY+ C + A+ +FD+M +
Sbjct: 123 QNTLMNMYSNCGCLVSARKVFDKMED 148
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ LF++N +I + + S E++ LF EM G++ D +T ++ A
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H+ I K + D +G L+ MYA C I+ A +F EMPE
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPE 351
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASD 110
R +F+ + + ++ T+I +A+ E+++LFD M+K+ ++P+ +T V+ A
Sbjct: 139 ARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACA 198
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + + +H I + G + L+ +Y C + A+ LFD+ E
Sbjct: 199 RARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQE 250
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLI 71
++ ++ A LK+ + N Y+ + + + + SL R +F+++ + ++ +I
Sbjct: 61 RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMI 120
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
A+ + ++E+ K ++ M G +PD +T+ ++ A L+ +G VH I + GL
Sbjct: 121 EAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLE 180
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +L+ MYA C +I A+ +FD +PE
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKARVIFDRLPE 211
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF++ +P + + ++ YA+ E+I LF M + G++PD +T+ V+
Sbjct: 300 LEEARKLFSD-LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLT 358
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G +H + G + D Y+ + L+ MYA C +D A +F++M E
Sbjct: 359 SCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSE 413
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 48/95 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ LI YA+ +++L + M + + P+ +T+ +++ + G VH I
Sbjct: 217 WTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYII 276
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G + ++ N+L+ MY C ++ A+ LF ++P
Sbjct: 277 QSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
+ KT E++ + + M+ G R + + +++ + + G VH+ I K G+
Sbjct: 19 VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++Y+ NTLL MYA C + A+ +FD +
Sbjct: 79 QPNRYLENTLLSMYAKCGSLTDARRVFDSI 108
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 20 HQLPALFLKTSL--DHNTYIISRF-ILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
Q+ A LK N YI ++ I + +L + LF+ + + +F++ +I
Sbjct: 68 QQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKC 127
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ ++ F EML+ G+ PDN P V KA G VH + K GLH +
Sbjct: 128 RIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVF 187
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ ++L MY C +D A+ +FDE+PE
Sbjct: 188 VASSLADMYGKCGVLDDARMVFDEIPE 214
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ + P L ++ T++ + + CS E+I +M ++GLRP+ T + A + +
Sbjct: 483 SGIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNF 542
Query: 118 GGSVHSLIFKVGLHSDKY-IGNTLLRMYAACKEID-----FAKALFDEMP 161
G S+H I + HS +L+ +YA C +I+ F L+DE+P
Sbjct: 543 GRSIHGYIIRNFQHSSSVSFETSLVDLYAKCGDINQAEKVFGNKLYDELP 592
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+N L+ Y + + E+I+L +M K G+ P +T + AS I G H+
Sbjct: 217 VVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHA 276
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL D +G ++L Y I++A+ +FD +
Sbjct: 277 IAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRI 313
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFN 58
IS ++Q + Q+ A T L + + SR F S +H+ +F+
Sbjct: 51 ISNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFD 110
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+P F +NT+I+ Y K + F +M++ D+ ++ F +KA Q V
Sbjct: 111 QTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIV 170
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
G +VHS+I+K G SD ++ N L++ Y + FA+ +FDE
Sbjct: 171 GMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDE 212
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKAS 109
R LF+ MP + ++N +I Y++ S +E+++LF M+ GL P T V+ AS
Sbjct: 338 ARKLFDE-MPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSAS 396
Query: 110 DQCLLIGVGGSVH-SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + +G +H + + K+G+ + N ++ MYA C ID A LF MPE
Sbjct: 397 GQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPE 450
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSI 81
++ K D + ++ + I + L F R +F+ + + + + T+I YA+ +
Sbjct: 176 SVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLD 235
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+I LF+ ML + ++P+ +T ++ A Q +G ++H I + + + N +L
Sbjct: 236 EAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAML 295
Query: 142 RMYAACKEIDFAKALFDEM 160
MY C + A+ +F+ M
Sbjct: 296 DMYVKCGCLTTAREIFNNM 314
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 33/45 (73%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L ++N++I AYA + +++ LFD+M+ +GL+PD++T+ V+ A
Sbjct: 453 LVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSA 497
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLP--ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNN 59
+QI +L+Q SK H + LP A ++ + +++ + + ++ + +F
Sbjct: 32 QKQIISLLQRSK--HINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQY 89
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
P ++ Y LI + + ++I+L+ ML + PDN ++KA L + G
Sbjct: 90 THNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREG 149
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS K+GL S++ + ++ +Y C E+ A+ +F+EMPE
Sbjct: 150 REVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE 193
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
V + +I + + +++ F M +RP+ T V+ A Q + +G
Sbjct: 196 VAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 255
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS + K + + ++GN L+ MY+ C ID A+ +FDEM +
Sbjct: 256 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 298
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + P AYN LIRAY+ +I L+ ML + P+ T+PFV+KA
Sbjct: 49 LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G ++H+ VGLH+D ++ L+ +Y C A +F +MP
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMP 161
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+ + + +Y L+ Y + + E+ +F +M ++PD T ++ A
Sbjct: 363 LFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAA 422
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G H + GL + I N+L+ MYA C ID ++ +FD+MP
Sbjct: 423 LQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMP 469
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTG---LRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
++ LI + E+ LF +ML G L ++ V AS L +G +H+
Sbjct: 273 WSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGT--QLHA 330
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L+ K G+H+D GN+LL MYA I+ A LFDE+
Sbjct: 331 LLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEI 367
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVMPPLFAYNTL 70
+T H H A+ L T L +T +I +I + P + F + +V+ A+N +
Sbjct: 118 GRTIHAH--AAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV----AWNAM 171
Query: 71 IRAYAKTSCSIESIK-LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+ YA +I L D + GLRP+ T ++ Q + G SVH+ +
Sbjct: 172 LAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAY 231
Query: 130 LHSDK---YIGNTLLRMYAACKEIDFAKALFDEM 160
L ++ IG LL MYA CK + +A +F M
Sbjct: 232 LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGM 265
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSI 81
A +KTSL+ + ++++FI L S + P +F YN L + + S I
Sbjct: 49 AAMIKTSLNQDCRLMNQFITACTSFKCLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPI 108
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
S++L+ ML+ + P + TY +VKAS G H F G H I TL+
Sbjct: 109 RSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVK--IQTTLI 166
Query: 142 RMYAACKEIDFAKALFDEMPE 162
Y+A I A+ +FDEMPE
Sbjct: 167 DFYSATGGIREARKVFDEMPE 187
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L SLFN + + + ++ T+I+ Y++ E+I +F +M++ G+ PD +T V+
Sbjct: 236 NLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVIS 295
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A ++ +G VH + G D YIG+ L+ MY+ C ++ A +F +P+
Sbjct: 296 ACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK 350
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R LF+ + L ++ T+I Y + SC E++ +F ++ + G +PD ++ +
Sbjct: 266 LSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNS 325
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G VH+ K L SD+Y+ N+L+ MYA C+ + A+A+F+ + E
Sbjct: 326 CGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAE 379
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMP-PL 64
++ I+LSK H L +K+ + Y S I SL +++FN + +
Sbjct: 430 QSAIELSKQIH------GLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDM 483
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+N +I A+ E++KLF+++ +GL P+ T+ +V + + + G H+
Sbjct: 484 VIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQ 543
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I K G SD ++ N L+ MYA C I + LF+
Sbjct: 544 IIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFE 577
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 33/147 (22%)
Query: 48 ISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEM----------------- 90
+ L R++ +P LF N L+RAY+K ++ +LFD M
Sbjct: 30 LPLAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQ 89
Query: 91 ----------------LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
G P+ ++A Q + G VH + ++GL +
Sbjct: 90 HGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNV 149
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161
Y+G L+ +YA ID A +FD +P
Sbjct: 150 YVGTALINLYAKVGCIDAAMLVFDALP 176
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ A +K +L+ + Y+ + I + + L R++F + +YN +I Y++
Sbjct: 337 QVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLG 396
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
+I +F +M L+P LT+ ++ S I + +H LI K G D Y G+
Sbjct: 397 DLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGS 456
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
+L+ +Y+ ++ AKA+F+ M
Sbjct: 457 SLIDVYSKFSLVEDAKAVFNLM 478
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP---PLFAYNT 69
S+ Q+ + ++ LD N Y+ + I + L + +P P+ +
Sbjct: 127 SRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPV-TWTA 185
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I Y++ +++LF +M G+RPD V A + G H +++
Sbjct: 186 VITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIA 245
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +D + N L+ +Y C + A+ LFD M
Sbjct: 246 VETDASVINALIDLYCKCSRLSLARKLFDCM 276
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLP--ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNN 59
+QI +L+Q S+ H + LP A ++ + +++ + + ++ + +F
Sbjct: 39 QKQIISLLQRSR--HINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQY 96
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
P ++ Y LI + + +E+I+L+ ML + PDN ++KA L + G
Sbjct: 97 THNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREG 156
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS K+G S++ + ++ +Y C E+ A+ +F+EMPE
Sbjct: 157 REVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE 200
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+ +I + + + +++ F M +RP+ T V+ A Q + +G VHS +
Sbjct: 209 CWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM 268
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + ++GN L+ MY+ C ID A+ +FDEM +
Sbjct: 269 RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 305
>gi|356495350|ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Glycine max]
Length = 579
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 7 ETLIQLS-KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLP--ISLHFTRSLFNNVMP- 62
E L+Q S + A H Q+ AL + +SL N Y+ +R IL+ + +TR +F ++
Sbjct: 44 EALLQNSCQNARHLLQIQALLVTSSLFRNPYL-ARTILSRASHLCDVAYTRVIFRSINSL 102
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
F N +I+AY+ + E+I + L G P++ T+ +V + + IG G H
Sbjct: 103 DTFCVNIVIQAYSNSHAPREAIVFYFRSLMRGFFPNSYTFVPLVASCAKMGCIGSGKECH 162
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K G+ S + N+L+ MY C + A+ LFD M
Sbjct: 163 AQATKNGVDSVLPVQNSLIHMYVCCGGVQLARVLFDGM 200
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L +N +I Y K ++KLF EM + GLR + T V A + +
Sbjct: 231 MPERNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGNARTMVCVATACGRSGRLKEA 290
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
SVH I ++ L S + L+ MY C++++ A+ +F+ M E
Sbjct: 291 KSVHGSIVRMSLRSSLILDTALIGMYCKCRKVEVAQIVFERMRE 334
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
++LF+ + P +FA+ ++ Y++ S E ++ + EM G+ PD +P V +A Q
Sbjct: 416 AQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQ 475
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L + VG VH + G D + N+L+ MY+ ++ + +FDEM E
Sbjct: 476 LLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVE 526
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I + +++ F +M ++G+ + +T V+ A D + G VH+ I
Sbjct: 561 WNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPACD----LKSGKQVHAYIT 616
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K S + N L+ MY+ C I A ++F M
Sbjct: 617 KNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNM 650
>gi|357461849|ref|XP_003601206.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
gi|355490254|gb|AES71457.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
Length = 553
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H R +F+ ++ P L +N+LI AY + I++F M G +PD T ++
Sbjct: 155 VHEARRVFDGIVEPDLVLWNSLISAYGGSGMWEIGIQMFSSMRLAGKKPDGFTLAGLLGG 214
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
L+ +G +H L K GL SD ++G+ L+ MY+ CK ID A +F
Sbjct: 215 IADSSLLSIGQELHGLSQKSGLDSDCHVGSLLVSMYSRCKCIDSAYRVF 263
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFA 66
L + K+ QL A LKT L + + ++ I L + +++ +F+ +F
Sbjct: 12 LTNVCKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFNNHINYAHHVFDKTSTRSVFL 71
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N++IRA+AK +I LF ML +RPDN TY ++A G+ VH
Sbjct: 72 WNSMIRAFAKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVVHGSAV 131
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VGL D + L+ Y+ + A+ +FD + E
Sbjct: 132 SVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVE 167
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
LH +F ++ + +YN++I AY C+ ++ +FDEML+ GL PD T+ ++ A
Sbjct: 357 LHLGTCVFRIMLERNIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSA 416
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKT 77
+L L K+ LD + ++ S + + S + +F + P L ++ LI Y++
Sbjct: 225 QELHGLSQKSGLDSDCHVGSLLVSMYSRCKCIDSAYRVFCGIFNPDLVTWSALISGYSQC 284
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+++ F ++ + D++ V+ + Q + G +H + + GL SD +
Sbjct: 285 GEYQKALLFFRKLNMKSKKLDSVLIATVLASITQMANVLPGCEIHGYVLRHGLESDVKVS 344
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
+ L+ MY+ C + +F M E
Sbjct: 345 SALIDMYSKCGFLHLGTCVFRIMLE 369
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%)
Query: 54 RSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
R+ + P L ++N +I A++ + E+I F +M+ TGL PD +T+ ++ A +
Sbjct: 416 RAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPV 475
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G +HS I K+GL + + N+LL MY C + A +F ++ E
Sbjct: 476 TINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSE 524
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVM--PPLFAYNTLI 71
T + Q+ + +K LD + + + S LH ++F +V L ++N ++
Sbjct: 476 TINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAIL 535
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
A + + E +LF ML + +PDN+T ++ + + VG VH K GL
Sbjct: 536 SACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLV 595
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALF 157
D + N L+ MYA C + A+ +F
Sbjct: 596 VDVSVSNRLIDMYAKCGSLKHARDVF 621
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R F+ + + + ++ +I Y++ ++I ++ +ML++G PD LT+ ++K
Sbjct: 207 SLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIK 266
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
A I +G +H + K G N L+ MY +I A +F
Sbjct: 267 ACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVF 316
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVH 122
L ++ ++I + + IE++ LF +M + G +P+ + V A L G +H
Sbjct: 324 LISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIH 383
Query: 123 SLIFKVGLHSDKYIGNTLLRMYA 145
+ K GL + + G +L MYA
Sbjct: 384 GMCAKFGLGRNVFAGCSLCDMYA 406
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R +F + P + ++++LI YA+ E++ LF M G++P+ +TY V+
Sbjct: 613 SLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLS 672
Query: 108 ASDQCLLIGVG 118
A L+ G
Sbjct: 673 ACSHIGLVEEG 683
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 55 SLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+LFN ++++N+LI A+ S ES++ F M K ++P+ T+P +K+
Sbjct: 36 TLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSAL 95
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G H G SD ++ + L+ MY+ C ++ A+ LFDE+P
Sbjct: 96 FDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP 144
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEML---------KTGLRPDNLTYP 103
R LF+ + + + +LI Y + + E++ +F E L + G D++
Sbjct: 137 RVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMI 196
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG--NTLLRMYAACKEIDFAKALFDEMP 161
V+ A + V VH + KVGL DK +G NTLL YA C E+ ++ +FD+M
Sbjct: 197 SVLSACSRVSNKAVSEGVHGVAIKVGL--DKVMGVENTLLDAYAKCGEVSLSRKVFDDMA 254
Query: 162 E 162
E
Sbjct: 255 E 255
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 52 FTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKAS 109
+R +F+++ + ++N++I YA+ S ++ ++F MLK G + + +T ++ A
Sbjct: 245 LSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLAC 304
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VG +H + K+G ++ + +++ MY C + + A+ FD M E
Sbjct: 305 AHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKE 357
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSC-----SIESIKLFDEMLKTGL-RPDNLTYPF 104
+ R+LF+ + P F YN+LIRA + + + ++ L+ ML G P++ T F
Sbjct: 76 YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
V+KA C +G G +H+ F GL Y+ LL +YA C+E+ A+ +FD M E
Sbjct: 136 VLKA---CTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVE 190
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYN 68
QL A H P+ +++T L N Y + R++F+ ++ L A++
Sbjct: 148 QLHAQAFGHGLEPSPYVQTGL-LNLYARCE--------EVALARNVFDGMVEDKNLVAWS 198
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
++I Y++ E++ LF +M G+ PD +T V+ A + + +G VH+ I +
Sbjct: 199 SMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRK 258
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G+ D + L+ MYA C I+ AK++FD M E
Sbjct: 259 GITVDLELSTALIDMYAKCGLIERAKSVFDSMVE 292
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L+ + LF +MP + ++ TLI +++T +I + EML+ GL+P+ T V+
Sbjct: 243 LNRAKQLFE-LMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLS 301
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G G +H I G+ D+ IG L+ MYA C E+D A +F M
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM 354
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 44 TSLPISLHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+SL S ++ S+F N F N LIR + + S++ F ML+ G++PD LT+
Sbjct: 70 SSLLKSPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTF 129
Query: 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
PFV+K++ + +G ++H+ K + D ++ +L+ MYA ++ A +F+E P+
Sbjct: 130 PFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPD 189
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F +NT+IR +T ++ + + M G DN TY F+VK Q +G +
Sbjct: 14 PDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQI 73
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H + K GL ++ NTL+ MY K+I+ A LF+EMP+
Sbjct: 74 HCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPK 114
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L A+NT+I E+I+LF ML++GL+PD+ T+ + A + +G
Sbjct: 112 MPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIG 171
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VHS I GL + + N+L+ MYA C ++ A +F++M
Sbjct: 172 RRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKM 213
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 9 LIQLSKTAHHHHQLPALFLKT---SLDHNTYIISRFILT--------SLPISLHFTRSLF 57
LI+ KT HQL A + S + ++++F+ T S LH+ +S+F
Sbjct: 22 LIKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAKSIF 81
Query: 58 NNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N++ P F YNT+IR + S I ++ F +M + + D+ ++PF +KA Q +
Sbjct: 82 NSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLGGVF 141
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K G SD Y+ N+L+ Y + A +FDE P+
Sbjct: 142 SARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQ 187
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ +MP ++NT+I AK E+I+LFD M+ +RPDN+ + A
Sbjct: 209 ARELFD-LMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACA 267
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
Q + G +H I + + D ++ L+ YA C +D A +FD
Sbjct: 268 QLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFD 315
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 21 QLPALFLKTSLDHNTYIIS----RFILTSLPISLHFTRSLFNNV--MPP-LFAYNTLIRA 73
Q+ +L +K+ L HNT F S L + SLF+++ PP +F +NTLIRA
Sbjct: 43 QIHSLIIKSGL-HNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
++ T S+ LF +ML +GL P++ T+P + K+ + +H+ K+ LH
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDE 159
++ +L+ MY+ E+ A+ +FD+
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDK 187
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + ++N +I Y ++ E++ F M + + P+ T V+ A
Sbjct: 212 ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGH 271
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G + S + G + + N L+ MY+ C EI A+ LFD M +
Sbjct: 272 LRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMED 322
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + +NT+I Y S E++ LF+ ML+ + P+++T+ V+ A
Sbjct: 313 ARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACAS 372
Query: 112 CLLIGVGGSVHSLIFK----VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G VH+ I K G ++ + +++ MYA C ++ A+ +F M
Sbjct: 373 LGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSM 425
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I A + ++ LF+EM+ G +PD++T+ V+ A Q + +G S
Sbjct: 430 LASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFS 489
Query: 124 LIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K G+ ++ + A + D AK L M
Sbjct: 490 SMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNM 527
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTL 70
S+T H ++ + LKT NT I I IL SL + R +F+++ L AYN +
Sbjct: 50 SQTPSHGQKIHSHILKTGFVPNTNISIKLLILYIKSHSLRYARQVFDDLHDRTLSAYNYM 109
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS----VHSLIF 126
I Y K ES+ LF ++ +G +PD T+ ++KAS + G+ G VH+ I
Sbjct: 110 IGGYLKNGQVDESLDLFHQLSVSGEKPDGFTFSMILKASTNRVSNGMVGDLGRMVHAQIL 169
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + D + L+ Y + + + +FD M E
Sbjct: 170 KFDVEKDDVLCTALIDSYVKNGRVGYGRTVFDVMSE 205
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 67 YNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N +I Y+K S ++ S++++ +M + RP+ T+ ++ A +G V + +
Sbjct: 242 FNAMIEGYSKVSEYAMRSLEVYIDMQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQL 301
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + +G+ L+ MY+ C + A+ +FD M E
Sbjct: 302 MKTPFFAVIKLGSALIDMYSKCGRVIDAQRVFDHMLE 338
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 27 LKTSLDHNTYIISRF-ILTSLPISLHFTRSLFNN--VMPPLFAYNTLIRAYAKTSCSIES 83
L+ +++ N I ++F ++++ + + + R LF+ F N++I+AY +T +S
Sbjct: 2 LRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDS 61
Query: 84 IKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
L+ ++ K T PDN T+ + K+ + + G +HS I++ G +D Y+ ++
Sbjct: 62 FALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVD 121
Query: 143 MYAACKEIDFAKALFDEMP 161
MYA ++ A+ FDEMP
Sbjct: 122 MYAKFGKMGCARNAFDEMP 140
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
R LF+ MP L ++NT+I Y + E I LF EM T L PD++T V+ A
Sbjct: 226 ARKLFD-AMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAI 284
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G H + + L + +L MY+ C EI+ AK +FDEMPE
Sbjct: 285 SDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPE 337
>gi|359490688|ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L + +I +A+ C+ ++I LF +M +G PD TY V+ A + L+ +G
Sbjct: 240 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 299
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACK---EIDFAKALFDEMPE 162
+HS + ++GL D +G +L+ MYA C +D ++ +F+ MPE
Sbjct: 300 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFERMPE 346
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFV 105
S+ +R +F MP + ++ +I AY ++ C E+I+LF +M+ + P++ ++ V
Sbjct: 333 SVDDSRKVFER-MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIWPNHFSFSSV 391
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+KA G V+S K+G+ S +GN+L+ MYA ++ A+ FD
Sbjct: 392 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 444
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +++ ++ +A S +++I F +ML+ G P+ + V++A VG ++
Sbjct: 142 LVSWSAMVSCFANNSMELQAIWTFLDMLELGFYPNEYCFAAVIRACSNANHAWVGEIIYG 201
Query: 124 LIFKVG-LHSDKYIGNTLLRMYA-ACKEIDFAKALFDEMPE 162
+ K G L +D +G L+ M+ ++ A +FD+MPE
Sbjct: 202 FVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 242
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
D M + PD TY ++K+ + +G VH + + GL D + NTL+ +Y+
Sbjct: 63 LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 122
Query: 147 CKEIDFAKALFDEM 160
C + + A+ +F+ M
Sbjct: 123 CGDTETARLIFEGM 136
>gi|357453201|ref|XP_003596877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240912|gb|ABD32770.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485925|gb|AES67128.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 27 LKTSLDHNTYIISRFILTSLPIS-LHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESI 84
++ + H+ +I ++ + S LH LF+ P F YN+LIRAY + E++
Sbjct: 35 IRLGISHDDFIRTKLVSCYASCSKLHQANILFSFTNRKPTFLYNSLIRAYLSLNLFKETL 94
Query: 85 KLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
LF EM + +P D T P V+K+ + +G VH + G D N L+ M
Sbjct: 95 SLFREM-RLSYKPFDCHTLPLVLKSCAGLSALRLGKQVHGAVLVNGFALDLKNSNALINM 153
Query: 144 YAACKEIDFAKALFDEMPE 162
YA C E++FA+ +FD M E
Sbjct: 154 YAKCGELEFARKVFDGMCE 172
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +IR+ ++ S ++ ++ +EML GL PD T P V+KA I G +H+ K
Sbjct: 79 NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138
Query: 128 VGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G+ + Y+ NTL+R+Y+ C I + +FDE P
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECP 173
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
Query: 20 HQLPALFLKTSL-DHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ A +KT + N Y+ + + L S+ S+H + +F+ L ++ TLI+A+ K
Sbjct: 130 QQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTK 189
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK-VGLHSDKY 135
+++ F EM LR D T V+ A + +G VHS I + + +D +
Sbjct: 190 AGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVF 249
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+GN LL MY C +++ A +FDEMP
Sbjct: 250 VGNALLDMYLKCDDLNSAYKVFDEMP 275
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I A E++ F M G++PD +T V+ + ++ +G VH+ +
Sbjct: 282 WNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMR 341
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +DK++GN LL MYA C ID A +F+ M
Sbjct: 342 RNHILADKFVGNALLDMYAKCGSIDEAFRVFESM 375
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R++F+ + P + +NTL+ Y + ++I+LF M ++PD T ++ +
Sbjct: 372 RAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRL 431
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ +G VHS K+ LH+D ++ + L+ MY+ C ++ A+ +F+ M E
Sbjct: 432 GILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTE 481
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT+I A A++ E+++++ ML+ GL P N T V+ A + G H L
Sbjct: 109 SWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLA 168
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KVGL ++++ N LL MY C + A LFD M
Sbjct: 169 VKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWM 203
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N++I A S + E+ F +M + G+ P +Y ++ + + I G +H+ +
Sbjct: 487 WNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVL 546
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + Y+G++L+ MYA C +D A+ F+ M
Sbjct: 547 KDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCM 580
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL------- 114
P ++ ++ A++ ++++LF M ++ +R D + V+ A Q
Sbjct: 206 PNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVAR 265
Query: 115 -IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + S+H+L+ + G SD+++GN+L+ MYA ++D A +F+ M
Sbjct: 266 AIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESM 312
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
Q+ A LK D N Y+ S I + + ++ R FN ++ + A+N +I YA+
Sbjct: 540 QIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNG 599
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
++++LF+ ML T +PD++T+ V+ L+
Sbjct: 600 FGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLV 636
>gi|242065278|ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
gi|241933759|gb|EES06904.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
Length = 798
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL +F ++ P L ++ +++ AY + C E++ LF EM + G+ D T ++
Sbjct: 167 SLRCAEKVFGSITSPDLVSWTSMLSAYTENGCDAEALMLFMEMARDGIACDAFTLSVALR 226
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A+ +G+G +H + K+GL +++ N L+ Y E+ + +FDEM
Sbjct: 227 AASSLGHVGLGHQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEM 279
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 53 TRSLFNNVMP----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
R +F+ MP L A+ TL+ YA + E+++L ML +RPD + ++A
Sbjct: 67 AREVFD-AMPDRGRSLVAWTTLMSGYATHGPASEALELLLCMLGLLVRPDAFVFSVALRA 125
Query: 109 SDQCLLIGVGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G+G +H + K+G + +D ++ N L+ MY++C+ + A+ +F +
Sbjct: 126 CAAVGSLGLGRQLHGAVAKLGYVGADLFVANGLVTMYSSCQSLRCAEKVFGSI 178
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKT 77
HQL +K L ++ + I L R++F+ + L ++NT+I+ YA+
Sbjct: 238 HQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEMNGKDLVSWNTIIQCYAEN 297
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
C E+ F M+ D T ++ G G +H + + GL SDK++
Sbjct: 298 LCHEEASAHFRAMMFEFAECDEFTLGSILHVVTATGAFGHGMEIHGYLIRAGLDSDKHVM 357
Query: 138 NTLLRMY 144
+ L+ MY
Sbjct: 358 SALIDMY 364
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++TL+ ++++ + + LF + + G D T ++ + + L+ G H+ +
Sbjct: 562 SWDTLVESFSQVDHHVGIVNLFHVIQRCGANLDYHTARLILSSCGKLGLLEEGLQAHAYM 621
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K GL S + L+ MY++C + A F+ MP+
Sbjct: 622 TKRGLASTACTNSYLIDMYSSCGSLRHAFDAFNYMPD 658
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 27 LKTSLDHNTYIISRF----ILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSI 81
+K L + Y +S+ ILT L + S+F ++ P ++NT+IR +A +S I
Sbjct: 1 IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
++ L+ M+ GL P++ T+PF+ K+ + G +H+ I K GL D ++ +L+
Sbjct: 61 SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120
Query: 142 RMYAACKEIDFAKALFD 158
MYA ++ A +FD
Sbjct: 121 SMYAQNGIVEDAHKVFD 137
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N +I YA+ E+++LF+EM+K ++PD T V+
Sbjct: 163 AQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTH 222
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ +G +HS I G S+ + N L+ +Y+ C E++ A LF+
Sbjct: 223 SGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI YA + E++ +F EMLK G P+++T ++ A I +G +H
Sbjct: 276 VISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHV 335
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I K G+ ++ + +L+ MYA C I+ A +FD
Sbjct: 336 YIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFD 372
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 27 LKTSLDHNTYIISRF-ILTSLPISLHFTRSLFNN--VMPPLFAYNTLIRAYAKTSCSIES 83
L+ +++ N I ++F ++++ + + + R LF+ F N++I+AY +T +S
Sbjct: 2 LRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDS 61
Query: 84 IKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
L+ ++ K T PDN T+ + K+ + + G +HS I++ G +D Y+ ++
Sbjct: 62 FALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVD 121
Query: 143 MYAACKEIDFAKALFDEMP 161
MYA ++ A+ FDEMP
Sbjct: 122 MYAKFGKMGCARNAFDEMP 140
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
R LF+ MP L ++NT+I Y + E I+LF EM T L PD++T V+ A
Sbjct: 226 ARKLFD-AMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAI 284
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G H + + L + +L MY+ C EI+ AK +FDEMPE
Sbjct: 285 SDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPE 337
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNN 59
+R+ L Q K Q+ A + L N ++ I + S+P +L + LF
Sbjct: 12 NRRRSKLWQNCKNFRTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEE 71
Query: 60 VMPPLFAY-NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P + N ++R A++ +++ L+ EM K G+ PD T+ FV+KA + G
Sbjct: 72 IPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNG 131
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
++H + + G ++Y+ N L+ +A C ++ A LFD+
Sbjct: 132 FAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDD 172
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI--SLHFTRSLFNNV 60
++ + +L + +KT +HQL A L +L H + + I + SLH FN++
Sbjct: 15 TKTLLSLFRFTKTLASNHQLNAQILVNAL-HRSLLFGPMIFGAYIQLGSLHVASKAFNHI 73
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
L ++NT++ +++K C + ++LF MLK G D+ F VKA L
Sbjct: 74 TFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAK 133
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
HSL K+ L D Y+ L+ +Y ++ A +F+E+P
Sbjct: 134 LFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVP 175
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L F LF + + ++ +I +A+ ++ESI +F +ML + P+++T+ +V A
Sbjct: 266 LDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLA 325
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G SVH + + G+ D + + MYA C I A +F ++PE
Sbjct: 326 CSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPE 379
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I+ + S +LF M ++G D +++A G + H L
Sbjct: 182 WGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCI 241
Query: 127 KVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + S+ ++ +L+ MY C +DFA LF+E+
Sbjct: 242 KKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEI 276
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL----TSLPISLHFTRSLFNNVM 61
+++L+Q K H QL + + T L + Y SR I ++ + H++ +FN++
Sbjct: 6 LDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLR 65
Query: 62 PP-LFAYNTLIRA--YAKTS--CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
P F +NT++RA Y + S ++ KLF L + +PD+ TYP ++ QC
Sbjct: 66 NPNTFTWNTIMRAHLYLQNSPHQALLHYKLF---LASHAKPDSYTYPILL----QCCAAR 118
Query: 117 V----GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V G +H+ G D Y+ NTL+ +YA C + A+ +F+E P
Sbjct: 119 VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESP 167
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 53 TRSLFNNVMP---PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
R +FN V + +++ ++ Y + E++ LF EM +G+ D + + A
Sbjct: 221 ARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSAC 280
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L + +G VH L KVG+ + N L+ +Y++C EI A+ +FD+ E
Sbjct: 281 SRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGE 333
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + +++ +I YA+ C E++ LF EM G+RPD + A + +G
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ I + L + + TL+ MY C ++ A +F M E
Sbjct: 423 KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEE 466
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
ML+ G++PDN T+PF++KA G +H + K G S +I N+L+ MY C +
Sbjct: 1 MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60
Query: 150 IDFAKALFDEMPE 162
+ ++ +FDEMP+
Sbjct: 61 YELSRQVFDEMPD 73
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF+ +M L + T I AY K +E++ L +M+ G+ PD +T V++A
Sbjct: 159 VEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRA 218
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIG--NTLLRMYAACKEIDFAKALFDEMPE 162
+ VH +I G ++ + L+ +Y C + +A+ +FD M E
Sbjct: 219 CSTLASFQLAHIVHGII-TTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQE 273
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 22 LPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSC 79
LPA +L+T L I L R + + MP + ++ +I Y++T
Sbjct: 84 LPATYLRTRL---------LIFYGKCDCLEDARKVLDE-MPEKNVVSWTAMISRYSQTGH 133
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S E++ +F EM+++ +P+ T+ V+ + + +G+G +H LI K S ++G++
Sbjct: 134 SSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSS 193
Query: 140 LLRMYAACKEIDFAKALFDEMPE 162
LL MYA +I A+ +F+ +PE
Sbjct: 194 LLDMYAKAGQIKEAREIFECLPE 216
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKT 77
Q+ L +K + D + ++ S + + + + R +F +P + + +I YA+
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFE-CLPERDVVSCTAIIAGYAQL 232
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E++++F + G+ P+ +TY ++ A L+ G H + + L +
Sbjct: 233 GLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ 292
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY+ C + +A+ LFD MPE
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPE 317
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 1 MISRQI-ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRF-ILTSLPISLHFTRSLFN 58
M SRQ+ L Q QL + KT + H+T+ ++ L + SL R +F+
Sbjct: 1 MRSRQVLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFD 60
Query: 59 NV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIG 116
P + +N+ +R+Y + E+++LF M+ T G PDN T P +KA ++
Sbjct: 61 ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE 120
Query: 117 VGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+G +H K + SD ++G+ L+ +Y+ C ++ A +F+E
Sbjct: 121 LGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEE 164
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 30 SLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLF 87
L +++ I+++F + + + + +F ++ P F +N +IR +A + S++L+
Sbjct: 506 GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELY 565
Query: 88 DEMLKTGLRPDN-------LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
+M++ GL+PDN ++ V+ A + G HS + + G D + +
Sbjct: 566 SKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAI 625
Query: 141 LRMYAACKEIDFAKALFDE 159
+ MY+ C +D A+ LFDE
Sbjct: 626 MDMYSKCGSLDLARCLFDE 644
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
V + ++ L+ YA+ + +S+ +F ML G++PD + ++ AS + +
Sbjct: 299 VWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQAL 358
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H + + G +S+ ++G +L+ +Y+ C + A LF M
Sbjct: 359 CLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGM 399
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R LF+ L ++ +I +Y ++I LFD+M+K G+RP ++T+ V+
Sbjct: 634 SLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 693
Query: 108 ASDQCLLIGVG 118
A L+ G
Sbjct: 694 ACSHSGLLEEG 704
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+HS +FK G+ D + L +YA C + A+ +FDE P
Sbjct: 23 LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETP 63
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N +I YA+ S E+I LF M + GLRPD +T V+ + + +G +
Sbjct: 254 AWNAMITGYAQNGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVELDGYA 313
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
GL+S+ Y+G L+ MYA C +++ A +F +MP
Sbjct: 314 LHRGLYSNVYVGTALVDMYAKCGDLEKATYVFGKMP 349
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F+YN +R +A +S S++LF ML+ LRPD T PF++ A+ +C V S
Sbjct: 79 PTAFSYNVALRFFA-SSRPDTSLRLFLSMLRAELRPDAYTLPFLLLAAARCPSPAVARSA 137
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H+ + K+GL + ++L+ MY+ + A+ +FD +P
Sbjct: 138 HAFLEKLGLRDHDHTVHSLITMYSCLGDHLTARRVFDGIP 177
>gi|302757017|ref|XP_002961932.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
gi|300170591|gb|EFJ37192.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
Length = 282
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L +S+F++V L ++N LI +YA E++ + +M GL+PD T+ V+
Sbjct: 13 NLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLH 72
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + G ++H+LI G S ++ TL++MY C+ ++ AKA+FD +
Sbjct: 73 ACSASEALAEGKAIHALIAASGFDSSCFVATTLIKMYGCCRCMEEAKAVFDRVA 126
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSI 81
AL + D + ++ + I + + +++F+ V + + L+ AY++ +
Sbjct: 88 ALIAASGFDSSCFVATTLIKMYGCCRCMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAK 147
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
++ ++ M G+ + T+ +V + G VH VG D +G TL+
Sbjct: 148 GALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLV 207
Query: 142 RMYAACKEIDFAKALFD 158
Y+ C ++D A+++FD
Sbjct: 208 DFYSKCHDVDTARSVFD 224
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP-L 64
L+Q Q+ LKT L + S+ F + SL + R++F+ + P
Sbjct: 24 LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +NT+IR Y+ + E++ L+ ML + + T+PF++KA + +H+
Sbjct: 84 FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K+G S+ Y N+LL +Y+ +I A+ LFD++ +
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 64 LFAYNTLIRAYAKTS--------------CSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
++ N+L+ Y+K+ E++ LF M G++ DN+ ++A
Sbjct: 153 IYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALNLFHRMQTAGIKLDNVALVSTLQAC 212
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ G +H+ I K + D +G L+ MYA C +++ A +F +M E
Sbjct: 213 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEE 265
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT++ A+A+ E++ LF EM +RPD+ T+ + A Q + G +H+ +
Sbjct: 222 SWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYM 281
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G +D +GN LL MYA C +D A +FD M
Sbjct: 282 GRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGM 316
>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
Length = 495
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT++ A+A+ E++ LF EM +RPD+ T+ + A Q + G +H+ +
Sbjct: 208 SWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYM 267
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++G +D +GN LL MYA C +D A +FD M
Sbjct: 268 GRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGM 302
>gi|357149296|ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 789
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL +FN + P L ++ +++ Y + C E++ LF EM+ G+R D T ++
Sbjct: 157 SLGCAEKVFNGIATPDLVSWTSMLSGYTENGCHAEAVMLFVEMVHAGIRCDAFTLSVALR 216
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A+ + +G +H I K+G + ++ N L+ Y E+ + +FD+M +
Sbjct: 217 AASSLANLSLGHQLHCCIIKLGFSNSGFLENCLIEFYGKSSELHLMQKVFDDMDD 271
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 53 TRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
R +F+ + PP L A+ ++ YA + E++ L M+ LRPD + ++A
Sbjct: 57 ARQVFDAMPPPARSLVAWTAIMSGYATHGPASEALVLLLRMMAWSLRPDGFVFSVALRA- 115
Query: 110 DQCLLIG---VGGSVHSLIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFD 158
C IG G +H K+G + +D ++ N LL MYA+C+ + A+ +F+
Sbjct: 116 --CAAIGSQRFGRQLHCAAAKMGYVGADLFVANGLLTMYASCRSLGCAEKVFN 166
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKT 77
HQL +K ++ ++ + I LH + +F+++ L + NT+I+ YA
Sbjct: 228 HQLHCCIIKLGFSNSGFLENCLIEFYGKSSELHLMQKVFDDMDDKDLVSSNTVIQCYADN 287
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
C +++ F M+ G D T ++ + G +H + + GL SDK++
Sbjct: 288 MCDEQALSHFRAMMFEGSECDEFTLGSILHVVTRRGAFDYGMEIHGYLIRAGLDSDKHVM 347
Query: 138 NTLLRMY 144
+ L+ MY
Sbjct: 348 SALMDMY 354
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I ++ ++ F ML+ G+ PDN TY V+ + +G +H I
Sbjct: 541 SWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQI 600
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+ LHSD YI +T++ MY+ C + ++ +F++ P+
Sbjct: 601 LKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPK 637
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
++ F + LF++ MP + ++N+++ Y + +SI++F +M ++ D T+ V+
Sbjct: 119 NMEFAQFLFDS-MPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVL 177
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KA G+G VH L ++G SD G L+ MY+ CK++D A +F EMPE
Sbjct: 178 KACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPE 233
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
QL L +K LD N + + + + + +L +F+++ + ++N +I A+ +
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNE 452
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ LF ML++ + PD+ T+ VVKA + G VH + K G+ D ++G+
Sbjct: 453 HVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGS 512
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
++ MY C + A+ + + + E
Sbjct: 513 AIIDMYCKCGMLVEAEKIHERLEE 536
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +FN P ++N LI YA+ +E++++F + K+ L D ++ + A
Sbjct: 325 ARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSA 384
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +H L K GL + + NT+L MYA C + A +FD+M
Sbjct: 385 IKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDM 433
>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P + +Y+ LI +++K + E+I+LF M +G+ P+ ++ ++ A + L + +G V
Sbjct: 166 PDVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQV 225
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+L K+G ++ N L+ +Y C +D A LFDEMP+
Sbjct: 226 HALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQ 266
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 32/130 (24%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLK------------------------------- 92
+F N LI Y K C +I LFDEM +
Sbjct: 238 VFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQ 297
Query: 93 -TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151
G + D T ++ A +C G +H+ ++GL ++ + N ++ Y C ++
Sbjct: 298 NKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLN 357
Query: 152 FAKALFDEMP 161
ALF+ MP
Sbjct: 358 HVAALFERMP 367
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
++I YA+ E+I LF G + D + + ++ VG +H K
Sbjct: 510 SMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALK 569
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G H++ +GN+++ MY+ C ID A F+ MP
Sbjct: 570 TGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMP 603
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNT I ++ SC ES++LF M + G P T ++ AS Q L + G +H I
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ +I N L MYA C EI+ A+ LFD
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFD 214
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ + ++ YAK +++ LF+EML + PD+ T VV + + + G +VH
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
GL+++ + + L+ MY+ C ID A+++F+ MP
Sbjct: 347 KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMP 384
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRA 73
HH + + L++N + S I + S + RS+FN +MP + ++N +I
Sbjct: 339 HHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFN-LMPTRNVVSWNAMIVG 397
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
A+ ++++LF+ ML+ +PDN+T+ ++ A C I G
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQG 442
>gi|224107421|ref|XP_002314475.1| predicted protein [Populus trichocarpa]
gi|222863515|gb|EEF00646.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L F R NV+ ++ ++I YA+ E++ F M++ L PD+ T+ V+ A
Sbjct: 159 LSFQRMPDKNVV----SWTSMITGYARNGYGEEALDFFVGMIRNCLLPDDFTFGAVLHAC 214
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++G G VH + + G H+ YIGN L+ MYA C +++ + F+++ E
Sbjct: 215 SSLAILGHGRMVHGCVIRHGFHAHVYIGNGLVNMYAKCGDLEGSNVAFNDIYE 267
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N +I + +++F EM ++ PD TY ++ A + L + G +H+++
Sbjct: 39 AWNIMISGLGQYGEIELCLEMFKEMRESLCEPDQWTYSALISAFTESLELVYGCMMHAVV 98
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G S N++L YA ++ A +F+ M
Sbjct: 99 IKTGWSSAMEANNSILSFYAKLGSLNDAVKVFESM 133
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 7/164 (4%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH---FTRSLFN 58
I +I L+ +KT H Q+ A FL+ L H+ I+S F+ S+ SLH + ++FN
Sbjct: 8 IESKILHLLHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFV--SVCTSLHQIPYATTIFN 65
Query: 59 NVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIG 116
+ P + +N++I+A++ +S F+ M T + PDN T+P ++KA+
Sbjct: 66 HTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYD 125
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G +H+ + +G + + LL +Y+ C +++ A +FDEM
Sbjct: 126 LGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEM 169
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I A+ E+ +F EML+ G PD+ T V+ + + G +HS
Sbjct: 205 VVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHS 264
Query: 124 LIFKVG-LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G L +GN+L+ Y C ++ A +F+EM
Sbjct: 265 YADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEM 302
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R++F+ + P + +NTL+ Y + ++++LF M ++PD T ++ + +
Sbjct: 370 RAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRL 429
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ +G VHS + LH+D ++ + L+ MY+ C +I A+ +F+ M E
Sbjct: 430 GILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTE 479
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R+L + MP + ++NT+I A A++ + E+++L++ ML+ GL P + T V+
Sbjct: 90 LDAARALLDE-MPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLS 148
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G H L KVGL + ++ N LL MY C ++ A LFD M
Sbjct: 149 ACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGM 201
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 54 RSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +FN + + +N++I A S + E+ F +M G+ P +Y ++ + +
Sbjct: 471 RIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARL 530
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H+ I K G + Y+G+ L+ MYA C +D A+ FD M
Sbjct: 531 SSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCM 578
Score = 55.5 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+ + P ++ ++ + ++++LF M ++G+R D + V+ + Q
Sbjct: 197 LFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACA 256
Query: 115 --------IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G +H+LI + G SD+++GN+L+ MY C ++D A +FD +P
Sbjct: 257 SEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLP 311
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
Q+ A +K D N Y+ S I + + ++ R F+ V + A+N +I YA+
Sbjct: 538 QIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNG 597
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
+++ LF+ ML T RPD +T+ V+ L+
Sbjct: 598 FGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLV 634
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI---SLHFTRSLFNN 59
+ Q + L++ Q+ LK N +S +++ I +L +TR +F++
Sbjct: 10 TEQTQALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDS 69
Query: 60 VMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P +NT++RAY+ ++ ++ L+ +ML + ++ T+PF++KA
Sbjct: 70 ISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEET 129
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H+ I K G + Y N+LLR+YA I A LF+++P
Sbjct: 130 QQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLP 172
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I + + E++ L +ML G++PD++T + A + G +H+
Sbjct: 207 VISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHT 266
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K + D +G L MY C E++ A +F ++ +
Sbjct: 267 YIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEK 305
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP-L 64
L+Q Q+ LKT L + S+ F + SL + R++F+ + P
Sbjct: 24 LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +NT+IR Y+ + E++ L+ ML + + T+PF++KA + +H+
Sbjct: 84 FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K+G S+ Y N+LL +Y+ +I A+ LFD++ +
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N MP + ++ ++I E++ LF M G++ DN+ ++A ++
Sbjct: 208 NHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 267
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ I K + D +G L+ MYA C +++ A +F +M E
Sbjct: 268 QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEE 313
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP 62
R+ L+ K QL +K + N Y++ I + + + +R +F+ +
Sbjct: 116 RRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDE 175
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VG 118
P + AYN +I + A+ + + E++ LF E+ + GL+P ++T V+ + C L+G +G
Sbjct: 176 PCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSS---CALLGSLDLG 232
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K G + TL+ MYA C +D A +F +MP+
Sbjct: 233 RWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPK 276
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPI--SLHFTRSLFNNVMPP 63
+LI T Q+ A +KT+ +NT +I++FI TS P S+ LF+ + P
Sbjct: 31 SLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQP 90
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+ +NT+ R YA+ + + I F L+ + VKA + G +H
Sbjct: 91 NIVLFNTMARGYARLNDPLRMITHFRRCLRLVSK---------VKA------LAEGKQLH 135
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G+ + Y+ TL+ MY AC +ID ++ +FD++ E
Sbjct: 136 CFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDE 175
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVM 61
+ ++ LI SKT H Q+ A+ + LDH+ + + + + L ++ +LF
Sbjct: 30 TNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQ 89
Query: 62 -PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +F + +I +A +++ + +ML G+ P+ T+ ++K I G +
Sbjct: 90 NPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKA 145
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+HS K+G SD Y+ LL +YA ++ A+ LFD MPE
Sbjct: 146 LHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I Y + E++ LF MLK +P+ +T V+ A Q + G VHS I
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 283
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G+ + ++G L+ MY+ C ++ A+ +FD++ +
Sbjct: 284 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 319
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R +F+ + + A+N++I YA S E+++LF M + GL P N+T+ ++
Sbjct: 306 SLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILS 365
Query: 108 A 108
A
Sbjct: 366 A 366
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLH---FTRSLFNNVMPP-LFAYNTLIR 72
H +L ++ L ++++ R I L + P + H + R +F+ + P F +N +IR
Sbjct: 32 HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIR 91
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-----GGSVHSLIFK 127
Y+ +++ +F EM + G+ PDN Y S G+ G ++H+L+ +
Sbjct: 92 GYSSCEAPRDALAVFREMRRRGVSPDN--YTMAAVVSASAAFAGLKWRSNGDAIHALVRR 149
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G SD ++ + L+ Y A + ++ A +F+EM E
Sbjct: 150 IGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYE 184
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 61 MPPLF--AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++NTLI + + E++++F+EML G+ PD +T V+ A Q + G
Sbjct: 283 MPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKG 342
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VHS I G+ D + N+L+ MYA C ++ A+ +F M
Sbjct: 343 MHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTM 384
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I A A+ + +K+ EM G+ P+ +T ++ A Q + G V++ +
Sbjct: 189 SWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV 248
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K G+ +D I N L+ MY C + A F MP
Sbjct: 249 GKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMP 284
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++ Y K + LF+EM + + ++ A Q + G +HS I
Sbjct: 391 SWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYI 450
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ + D + + L+ MYA C ID A +F +M
Sbjct: 451 EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKM 485
>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Brachypodium distachyon]
Length = 596
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 9 LIQLSKTAHH---HHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPP 63
LIQL + H QL A + S+ + ++ S+ I L S LH R +F+ + P
Sbjct: 20 LIQLCADSGHLAAGQQLHARLVALSVIPSNFLASKLISLYSRTARLHDARRVFDAIPQPN 79
Query: 64 LFAYNTLIRAYAKTSCSIES-IKLFDEMLKTGLRPDNLTYPFVVK---ASDQCLLIGVGG 119
LFA+N ++ A + S + ++LF +G+ PD +T ++K AS L V G
Sbjct: 80 LFAWNAILIALSLHSPEPSAALRLF---AGSGVSPDEVTVSALLKSLAASGTGLSPLVTG 136
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H+L F G +D ++ N L+ YA +I A+A+FDEMP
Sbjct: 137 EIHALAFLRGFGTDLFVSNGLVTAYANTGDIRSARAVFDEMP 178
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT----GLRPDNLTYPFVVK 107
R++F+ MP + ++N+LI A + C E ++LF +++ G++P+N+T V+
Sbjct: 171 RAVFDE-MPRRDVVSWNSLISACTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVLH 229
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ Q + G +V + + GL D N+++ YA C + A+ L + MP+
Sbjct: 230 SCAQLKAVDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHARELLERMPK 284
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 12/154 (7%)
Query: 18 HHHQLPALFLKTSLDHNT----YIISRFILTSLPISLHFTRSLFNNVMPPLFAY-NTLIR 72
H Q+ A+ L+TSL N+ + SR L+ +P ++++ +F+ + P ++ NT+IR
Sbjct: 26 HLRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIR 85
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIG--VGG-SVHSLIFKV 128
A++ + E +LF + + P N L+ F +K C+ G +GG +H IF
Sbjct: 86 AFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKC---CIKSGDLLGGLQIHGKIFSD 142
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G SD + TL+ +Y+ C+ A +FDE+P+
Sbjct: 143 GFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQ 176
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM---LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++N LI Y + + + + LFD+M + ++PDN+T ++A + G VH
Sbjct: 181 SWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVH 240
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + GL + NTL+ MY+ C +D A +F+ M E
Sbjct: 241 DFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRE 280
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPL 64
E L++ + Q+ A + + L + ++++ I L S+ + R LF V P
Sbjct: 31 EALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDS 90
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +++L++ +K SI+++ + ML +G N T+ V+KA + +G +HS
Sbjct: 91 FLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSH 150
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G SD Y+ L+ +YA ++ AK +FD MP+
Sbjct: 151 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQ 188
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ MP + A+N+LI Y + ESI LF M+++G +PD+ T ++ + Q +
Sbjct: 184 DAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD 243
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H G + +G +L+ MY C + A+ +FD M E
Sbjct: 244 FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKE 289
>gi|356546597|ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Glycine max]
Length = 525
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTL 70
S+T H ++ + LK+ NT I + ++ L + L + R +F+++ L AYN +
Sbjct: 49 SETPSHGQKIHSSILKSGFVPNTNISIKLLILYLKCNCLRYARQVFDDLRDRTLSAYNYM 108
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS----DQCLLIGVGGSVHSLIF 126
I Y K ES+ L +L +G +PD T+ ++KAS + LL +G VH+ I
Sbjct: 109 ISGYLKQDQVEESLGLVHRLLVSGEKPDGFTFSMILKASTSGCNVALLGDLGRMVHTQIL 168
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + D+ + L+ Y + +A+ +FD M E
Sbjct: 169 KSDIERDEVLCTALIDSYVKNGRVAYARTVFDVMSE 204
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+ A+N +I Y+KTS ++ S++++ +M + RP+ T+ V+ A +G V
Sbjct: 238 VVAFNAMIEGYSKTSEYAMRSLEVYIDMQRLNFRPNVSTFASVIGACSMLAAFEIGQQVQ 297
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
S + K ++D +G+ L+ MYA C + A+ +FD M
Sbjct: 298 SQLMKTPFYADIKLGSALIDMYAKCGRVVDARRVFDCM 335
>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 833
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHN----TYIISRFILTSLPISLHFTRSLFNN 59
+Q +TL Q +K H + + L + + TYI S I ++ + L N
Sbjct: 32 QQCKTLTQ-AKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILL-------LEKN 83
Query: 60 VMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
V P ++ +N LIR + +++LF M PD+ T+PFV KA +
Sbjct: 84 VTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFE 143
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G S+H + ++G S+ ++ N ++ MY CK + A+ +FDE+
Sbjct: 144 LGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDEL 187
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 49 SLHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLK--TGLRPDNLTYP 103
SL R++F+ + P + + +I YA+ + +++LF EM K + P++ T
Sbjct: 424 SLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTIS 483
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVG-LHSDK-YIGNTLLRMYAACKEIDFAKALFDEMP 161
V+ A + + G +H+ + + + SD ++ N L+ MY+ ++D A+ +FD M
Sbjct: 484 CVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS 543
Query: 162 E 162
+
Sbjct: 544 K 544
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 37/133 (27%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL--------- 114
+F N +I Y K + + K+FDE+ G+ D++T+ +V C +
Sbjct: 161 VFVCNAVISMYGKCKAVVHARKVFDELCYRGI-CDSVTWNSIVSVYSHCFVPNVAVSLFR 219
Query: 115 ------------IGV---------------GGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+GV G VH + GL D ++GN L+ MYA C
Sbjct: 220 EMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKC 279
Query: 148 KEIDFAKALFDEM 160
+++ A +F+ M
Sbjct: 280 GKMEDANKVFERM 292
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHS 123
++++I YA+ E++ +F +M RP+ +T ++ A C +G G H
Sbjct: 335 WSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSA---CASVGALLHGKETHC 391
Query: 124 LIFKV---GLHSDK----YIGNTLLRMYAACKEIDFAKALFDEM 160
K G H+D + N L+ MYA CK ++ A+A+FDE+
Sbjct: 392 YSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 435
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPL 64
E L++ + Q+ A + + L + ++++ I L S+ + R LF V P
Sbjct: 95 EALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDS 154
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +++L++ +K SI+++ + ML +G N T+ V+KA + +G +HS
Sbjct: 155 FLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSH 214
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G SD Y+ L+ +YA ++ AK +FD MP+
Sbjct: 215 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQ 252
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ MP + A+N+LI Y + ESI LF M+++G +PD+ T ++ + Q +
Sbjct: 248 DAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD 307
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H G + +G +L+ MY C + A+ +FD M E
Sbjct: 308 FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKE 353
>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
Length = 625
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 43 LTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCS----IESIKLFDEMLKTGLRP 97
++ P + S+F + V P F YNTL+R + +++L+ + L+ G+ P
Sbjct: 89 VSGWPGGMELAASIFESLVEPEAFDYNTLMRGHVSGGGGDRDPAAALRLYIDGLEAGVSP 148
Query: 98 DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
D+ T+PFV+KA Q + G + + I K+G D+++ N+L+ Y C A+ F
Sbjct: 149 DSYTFPFVLKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGKCGAPAMARLAF 208
Query: 158 DEM 160
D +
Sbjct: 209 DRV 211
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
+++ L+ AY K E + F M+ G RPD + +V A C +G G SVH
Sbjct: 220 SWSALLAAYTKAGLWGECLASFGSMMLDGWRPDESS---MVSALSACAHLGSFDAGRSVH 276
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEID 151
+ + + + +LL MYA C I+
Sbjct: 277 CALLRNTARLNTIMLTSLLDMYAKCGSIE 305
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP + ++ T+I YA+ C +++ +F EM G+ PD ++ V+ A
Sbjct: 191 AREVFDE-MPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACA 249
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + VG +H K G + + N L+ MYA C ID A LF++M E
Sbjct: 250 QLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIE 301
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
++ A +K SL + +++++ + +S + + +F + P +F+YN +IR Y
Sbjct: 25 KIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNH 84
Query: 79 CSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+I +F++ML T PD T+PFV+K+ L +G VH+ + K G +
Sbjct: 85 KHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITE 144
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N L+ MY C ++ A +++EM E
Sbjct: 145 NALIDMYTKCGDMSGAYQVYEEMTE 169
>gi|302780944|ref|XP_002972246.1| hypothetical protein SELMODRAFT_97289 [Selaginella moellendorffii]
gi|300159713|gb|EFJ26332.1| hypothetical protein SELMODRAFT_97289 [Selaginella moellendorffii]
Length = 279
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
L ++NTLI Y ++ ++ +F M GL PD LT+ V+ A C L+ G S
Sbjct: 6 LVSWNTLIAGYGQSGDGAVALAMFSRMRDEGLEPDALTFIAVINA---CALLAAREEGVS 62
Query: 121 VHSLIFKVGLH--SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+HS + G H + ++ N+L+ MYA C +D A+ +FD MP
Sbjct: 63 IHS---QAGRHELENTFVANSLVDMYAKCGSLDNARRVFDRMP 102
>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 56/99 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+FAYN LI + + + ++EM + G+ PD T+P ++K + + + +H
Sbjct: 25 VFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPCLIKGLCEVMEVFQVKKIHG 84
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ K+GL D Y+G++L+ Y + + A+ LFDE+P+
Sbjct: 85 LVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPD 123
Score = 39.3 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
++ L K LD + Y+ S + + L L R LF+ + + +N+++ YA+
Sbjct: 81 KIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIG 140
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ + EM + G+ T V+ G VH + K+G S + N
Sbjct: 141 RFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCN 200
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
L+ MY C+ + A +F+ M E
Sbjct: 201 ALIDMYGKCRCVVDALEIFETMNE 224
Score = 35.4 bits (80), Expect = 8.4, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F++N+++ A S +++LFD ML G++ D +T ++ A + G +H
Sbjct: 227 IFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHG 286
Query: 124 LIFKVGLHSDK--------YIGNTLLRMYAACKEIDFAKALFDEM 160
+ G D N L+ MYA C + A +F M
Sbjct: 287 YMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNM 331
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 42 ILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDN 99
+L+ + + + S+F + + +N+++RA+ ++ +++ + EML+ PD
Sbjct: 20 VLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDR 79
Query: 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
T+P ++K L VG +H + K LHSD YI TLL MYAAC ++ A+ LF+
Sbjct: 80 FTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFER 139
Query: 160 M 160
M
Sbjct: 140 M 140
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I Y K C E++ L+ +M + G PD +T +V A + +GVG +HS I
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ + +G+ L+ MYA C ++ A+ +FD++ +
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSD 243
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVK 107
L R +F+ + ++A++ LI Y K + S E+++LF E+ + +RP+ +T V+
Sbjct: 231 LKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A Q + G VH I + + N+L+ M++ C +ID AK +FD M
Sbjct: 291 ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSM 343
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 62/109 (56%)
Query: 54 RSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
RS + P F +N ++R+Y + ++S++++ M+++ + PD T P V+KA+ Q
Sbjct: 71 RSCILDQYPIAFLWNNIMRSYIRHDSPLDSVQVYLGMVRSNVLPDRYTLPIVIKAAVQIH 130
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G +HS+ ++G D++ + + +Y E++ A+ +FDE PE
Sbjct: 131 DFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGELENARNVFDENPE 179
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
QL ++ ++ + + S FI L L R++F+ N L ++N +I
Sbjct: 137 QLHSVAVRLGFVGDEFCESGFITLYCKAGELENARNVFDENPERKLGSWNAIIGGLNHAG 196
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF--KVGLHSDKYI 136
+ E++++F EM ++G PD+ T V A + + +H + K SD +
Sbjct: 197 RANEAVEMFMEMRRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMM 256
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY C +DFA +F+EMP+
Sbjct: 257 MNSLIDMYGKCGRMDFAIQVFEEMPQ 282
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSC-SIESIKLFDEMLKTGL-RPDNLTYPFVV 106
+ + R LF+ + P +F++N++IR +++ S E + LF +M++ G P+ T FV+
Sbjct: 109 IDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVL 168
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KA + G VH+ + K G S ++ L+ YA C++I A +FDE+ +
Sbjct: 169 KACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITD 224
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A++T+I YA+ E++ LF +M K G+ PD +T V+ A + G VH+
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K + +D + L+ MYA C I+ AK +FD MP
Sbjct: 287 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMP 324
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSC-SIESIKLFDEMLKTGL-RPDNLTYPFVV 106
+ + R LF+ + P +F++N++IR +++ S E + LF +M++ G P+ T FV+
Sbjct: 40 IDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVL 99
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
KA + G VH+ + K G S ++ L+ YA C++I A +FDE+ +
Sbjct: 100 KACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITD 155
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A++T+I YA+ E++ LF +M K G+ PD +T V+ A + G VH+
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K + +D + L+ MYA C I+ AK +FD MP
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMP 255
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 51 HFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+F R+ F NV+ ++ I + + + E++KLF +L++G+RP+++T+ VV+A
Sbjct: 140 YFERNPFQNVV----SWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACG 195
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G+G S+ L+ K G + N+L+ + EID A+ +FD M
Sbjct: 196 ELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM 245
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T+I Y + + +++F+ +L +G P+ T+ V+ A + G +VH I
Sbjct: 415 SWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKI 474
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G+ D ++G L MYA C +I +K +F+ MPE
Sbjct: 475 IKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPE 511
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLK 92
T I+ ++ T L R +F+ MP +++ +I Y+++ + E++KLF +M++
Sbjct: 254 TAILDAYVETG---DLREARRIFDE-MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
G +P+ + + A + G ++H + K+G+ D +IG++L+ +Y C + D
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDD 369
Query: 153 AKALFDEMPE 162
+ +FD + E
Sbjct: 370 GRLVFDLILE 379
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 51 HFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+F R+ F NV+ ++ I + + + E++KLF +L++G+RP+++T+ VV+A
Sbjct: 140 YFERNPFQNVV----SWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACG 195
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G+G S+ L+ K G + N+L+ + EID A+ +FD M
Sbjct: 196 ELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM 245
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T+J Y + + +++F+ +L +G P+ T+ V+ A + G +VH I
Sbjct: 415 SWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKI 474
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G+ D ++G L MYA C +I +K +F+ MPE
Sbjct: 475 IKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPE 511
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLK 92
T I+ ++ T L R +F+ MP +++ +I Y+++ + E++KLF +M++
Sbjct: 254 TAILDAYVETG---DLREARRIFDE-MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
G +P+ + + A + G ++H + K+G+ D +IG++L+ +Y C + D
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDD 369
Query: 153 AKALFDEMPE 162
+ +FD + E
Sbjct: 370 GRLVFDLILE 379
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLF 57
++S + +L++ K+ Q+ A + T L + + SR F S +L + +
Sbjct: 51 VLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKIL 110
Query: 58 NNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLI 115
NN+ P +F++N +IR ++ + + L+ ML + G RPDN TY F+ K +L
Sbjct: 111 NNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLS 170
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+G + + K+G D Y+ N ++ M + E A +FDE
Sbjct: 171 YMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDE 214
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESI 84
LK D + Y+ + I L S+ S + + L ++N+LI Y + E++
Sbjct: 181 LKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAM 240
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
++ +M+ ++PD +T VV A Q + +G +H I + GL+ + N L+ MY
Sbjct: 241 GIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMY 300
Query: 145 AACKEIDFAKALFDEM 160
C +++ K LFD M
Sbjct: 301 VKCGDLEAGKVLFDNM 316
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L LF++ MP + A+N +I + + + S E+++LF EM + ++PD +T +
Sbjct: 337 LDMAGKLFHD-MPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLS 395
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A Q + G H+ I K L D +G L+ MYA C + A +F+EMP
Sbjct: 396 ACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP 449
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSI 81
A K D + ++ + I S+ R +F+ + + ++ ++ Y + C
Sbjct: 169 ACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFE 228
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
ES+KLF M G +P+N T+ V+KA + VG +VH FK + ++G L+
Sbjct: 229 ESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELI 288
Query: 142 RMYAACKEIDFAKALFDEMPE 162
+Y ++D A +F+EMP+
Sbjct: 289 DLYIKSGDVDDALQVFEEMPK 309
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT+I Y + +++ LF +ML+ ++ +TY V++A + G +HSL
Sbjct: 415 SWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLS 474
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + +GN L+ MYA C I A+ +FD + E
Sbjct: 475 VKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLRE 511
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
++V+P F +I YA++ S E+I++F M + + P+ T +++A + + +
Sbjct: 310 DDVIPWSF----MIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQL 365
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G +H + KVGL + ++ N L+ MYA C ++ + LF E P
Sbjct: 366 GNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 43/132 (32%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV--VKASDQCL----LIGV 117
LFA N L+ Y K ++ KLFDEM PD T FV ++ QCL IG+
Sbjct: 79 LFANNILLNFYVKYDSLPDAAKLFDEM------PDRNTVSFVTLIQGYSQCLRFSEAIGL 132
Query: 118 -------------------------------GGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146
G SVH+ ++K+G SD ++G L+ Y+
Sbjct: 133 FSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSV 192
Query: 147 CKEIDFAKALFD 158
C + A+ +FD
Sbjct: 193 CGYAECARQVFD 204
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYA 75
H H + + FL L I++ + L R +F+ MP + + LI ++
Sbjct: 110 HAHLVDSHFLDNHLVLQNIIVNMYAKCGC---LDDARRMFDE-MPTKDMVTWTALIAGFS 165
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ + +++ LF +ML+ GL+P++ T ++KAS + G +H+ K G S Y
Sbjct: 166 QNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVY 225
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+G+ L+ MYA C +D A+ FD MP
Sbjct: 226 VGSALVDMYARCGHMDAAQLAFDGMP 251
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 8 TLIQLSKTAHHHH------QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
TL L K + H QL A LK + Y+ S + L + M
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250
Query: 62 P--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-- 117
P ++N LI +A+ ++ L +M + +P + TY V A C IG
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSA---CASIGALE 307
Query: 118 -GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G VH+ + K GL +IGNTLL MYA ID AK +FD +
Sbjct: 308 QGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ + +F+ V P + ++NT++ A+ E++ F++ML+ G+ P+ +++ V+
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A L+ G L+ K + D T + + +D A+ EMP
Sbjct: 400 ACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMP 453
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 39 SRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAK-----TSCSIESIKLFDEMLKT 93
+R I ++ P +LHF+ + F +NTLIRA+ + T + I +F M
Sbjct: 5 TRLISSTHP-TLHFSHPTLES-----FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFH 58
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
G++PD T+PF++++ L+ +G SVH+ I + GL D ++ +L+ MY++ +D A
Sbjct: 59 GVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMA 118
Query: 154 KALFDEMPE 162
+ LF MPE
Sbjct: 119 RNLFAVMPE 127
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 27 LKTSLDHNTYIISRFILTSLPISL-----------HFTRSLFNNV--MPPLFAYNTLIRA 73
L+++++ N I+++FI S ++L R +F+N F N++I+A
Sbjct: 2 LRSAVESNVNILAKFITISGCLALIPSVYESLAIIQHARQVFDNRPHKDDTFLCNSMIKA 61
Query: 74 YAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132
+ ES L+ ++ K TG PDN T+ + K+ + + G +H+ + K+G
Sbjct: 62 HVGMRQFYESFTLYQDLRKGTGFLPDNFTFTALAKSCGLNMAVWEGFEIHNHVLKMGFGL 121
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D Y+ L+ MYA E+ A+ +FDEM E
Sbjct: 122 DLYVSTALVDMYAKFGELCMARKMFDEMAE 151
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKAS 109
RSLF+ MP LF++N +I Y++ + S E++KLF EM +T PD +T V+ A
Sbjct: 235 ARSLFD-AMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPAI 293
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H + + L+ MYA C E+ A+ +FD MP+
Sbjct: 294 ADLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAKCGEMLKARRVFDSMPK 346
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL------TSLPISLHFTRSLFNNVMPP--LFAYNTLIR 72
QL A +K+ L + ++R + + P L + R +F+ + P + YNTL+R
Sbjct: 49 QLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLR 108
Query: 73 AYAKTSCS-------IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
YA+ S + E+ ++F ML+ G+ PD T+ ++KA G H +
Sbjct: 109 GYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVA 168
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
KVG +Y+ TL+ MYA C + A+ +F
Sbjct: 169 VKVGAAEHEYVLPTLINMYAECGDARAARTMF 200
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R++F V + +YN +I A ++S E++ LF EM GL+ ++T V+ A C
Sbjct: 197 RTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSA---C 253
Query: 113 LLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L+G +G +H + KV L S + L+ MY C ++ A ++F M
Sbjct: 254 ALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGM 304
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A++ +I AYA S E+I LF+EM K G++PD++T+ V+ A L+ G +
Sbjct: 311 AWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSM 370
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ GL + + A ++D A DE+P
Sbjct: 371 REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELP 406
>gi|255543567|ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547857|gb|EEF49349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ LI A + E +KLF+EM +T + D T+ V+KAS I +G +HS +
Sbjct: 414 WTALISANVQKGLLEEGLKLFNEMRRTNVSADQATFASVLKASANLASISLGKQLHSYLI 473
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G S+ Y G+ L+ MYA C + A F EMP
Sbjct: 474 RSGFWSNVYSGSALVDMYAKCGSVKEAIRTFKEMP 508
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-----GGSV 121
YN LI Y K + ++I+LF +M G P + T+ V+ C IG+ G +
Sbjct: 212 YNALITGYGKEGLNEDAIRLFTQMQNLGFEPSDFTFQAVL-----CACIGLDDIIFGQQI 266
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H K+GL + ++GN+LL Y+ ++ A LF +MPE
Sbjct: 267 HGYAVKMGLVWNVFVGNSLLDFYSKHDCVNDAWKLFSKMPE 307
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP-P 63
Q+++L+Q + + + K ++ N I+ +L I+ R LF++++
Sbjct: 52 QVKSLLQRGQLSEARDLFDQMPHKNTVSVNMMILGYVKERNLSIA----RELFDSMVDRT 107
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ LI Y + E+ KLF M++ G +PD +T+ ++ + + VH+
Sbjct: 108 AVTWTILIGGYCQFDQFSEAFKLFSNMIRDGKKPDYVTFATLLSGCNDPEMTKELFQVHT 167
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G S I N+L+ Y +D A +F EM E
Sbjct: 168 HVVKLGHGSAVIICNSLVDSYCKMHRLDLAHRIFKEMVE 206
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 61 MPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP L +YN +I AY+ ESI LF E+ T N + ++ + L + +G
Sbjct: 305 MPELDGVSYNVMITAYSWIGQYRESIDLFRELQFTKFERRNFPFATMLSIAGNTLDLQMG 364
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+HS G + + N+L+ MYA C ++A+ +F
Sbjct: 365 QQLHSHAIVTGADLEVLVANSLVDMYAKCGRSEYAERIF 403
>gi|41469497|gb|AAS07282.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 476
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAY 74
H QL A +K+ L + SR F + + R + ++ P F +NT IRA
Sbjct: 3 HLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIRAL 62
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
A ++ LF +ML + P+ T+P + A + G G +H ++ K+GL D
Sbjct: 63 ADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLGGDA 122
Query: 135 YIGNTLLRMYAACKEIDFAKALF 157
Y+ N+++ MYA+ D A AL
Sbjct: 123 YVRNSVIAMYASRGAADEAIALL 145
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R++F+ MP + ++ ++ AY++ S ++++LF M G+ P+ V+
Sbjct: 172 ARAVFDG-MPARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCA 230
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G VH+ I K + + + L+ MY C +I A+ +FD
Sbjct: 231 SLGALEQGAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFD 278
>gi|297845310|ref|XP_002890536.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336378|gb|EFH66795.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 687
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
++++ PL +N LI +Y + ES+ ++ M+ G++PD TYP V+KA L
Sbjct: 143 SDILHPL-PWNVLIDSYVRNKRFEESVSVYKRMMSKGIQPDEFTYPSVLKACGALLDFAY 201
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH + Y+ N L+ MY ++D A+ LFD M E
Sbjct: 202 GRVVHGSVEVSSHRCSLYVCNALISMYKRFGKVDVARKLFDRMSE 246
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N++I YA S E+ L EML +G P+ +T ++ + + G H
Sbjct: 373 LSTWNSIISGYAHNERSEETSFLLKEMLLSGFHPNYITLASILPLCARVANLQHGKEFHC 432
Query: 124 LIFKVGLHSDKYI-GNTLLRMYAACKEIDFAKALFDEM 160
I + + D I N+L+ MYA EI AK +FD M
Sbjct: 433 YILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSM 470
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
+ R +F+ + P LF +N ++R YA ++ ++ M + LRPD T+ ++++A
Sbjct: 51 YARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRAC 110
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH + K+G D Y+ N L+ M+A C ++ A L DE E
Sbjct: 111 AGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGE 163
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ + ++NT+I YA ++++FDEM G PD T ++
Sbjct: 217 RELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANT 276
Query: 113 LLIGVGGSVHSLIFKVGLHSDK------YIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ G +H LH ++ +GN L+ MYA C ++ A F+ M +
Sbjct: 277 GLLDAGRMIHH-----QLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKD 327
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
+F R+ F NV+ ++ I + + + E++KLF +L++G+RP+++T+ VV+A
Sbjct: 139 WYFERNPFQNVV----SWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRAC 194
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G+G S+ L+ K G + N+L+ + EID A+ +FD M
Sbjct: 195 GELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM 245
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T+I Y + + +++F+ +L +G P+ T+ V+ A + G +VH I
Sbjct: 415 SWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKI 474
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G+ D ++G L MYA C +I +K +F+ MPE
Sbjct: 475 IKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPE 511
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLK 92
T I+ ++ T L R +F+ MP +++ +I Y+++ + E++KLF +M++
Sbjct: 254 TAILDAYVETG---DLREARRIFDE-MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
G +P+ + + A + G ++H + K+G+ D +IG++L+ +Y C + D
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDD 369
Query: 153 AKALFD 158
+ +FD
Sbjct: 370 GRLVFD 375
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ +K +L ++ ++ + I S + +FN + P F +N +IR+ +
Sbjct: 38 QIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSLNH 97
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E++ LF ML + D T+PFV+KA + +G VH L K G +D + N
Sbjct: 98 KPREALLLFILMLSHQPQFDKFTFPFVIKACLASSSLRLGTQVHGLAIKAGFFNDVFFQN 157
Query: 139 TLLRMYAACKEIDFAKALFDEMP 161
TL+ +Y C + D + +FD+MP
Sbjct: 158 TLMDLYFKCGKPDCGRKVFDKMP 180
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N MP + ++ +I AY K E+ +LF M ++P+ T +++AS Q +
Sbjct: 208 NQMPTRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLS 267
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G VH K G D Y+G L+ MY+ C + A+ +FD M
Sbjct: 268 MGRWVHDYAHKNGFVLDCYLGTALIDMYSKCGSLQDARKVFDVM 311
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
+F R+ F NV+ ++ I Y + S+E++KLF ++L++ ++P+ +T+ VV+A
Sbjct: 139 WYFERNPFQNVV----SWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRAC 194
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G+G SV LI K G D + N+L+ + EI A+ +FD M E
Sbjct: 195 ANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEE 247
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 59 NVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N+MP +++ +I + E ++F+EM+ G P+ T+ ++ A +
Sbjct: 406 NIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLD 465
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G ++H I K+G+ D Y+G L MYA +I+ +K +F+ MP+
Sbjct: 466 KGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPK 511
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ MP +++ +I Y ++ ES++LF M++ G +P+ + ++ A
Sbjct: 270 RRIFDE-MPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALAS 328
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G ++H + K+G D ++ ++L+ MY C E + LFD + E
Sbjct: 329 VEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILE 379
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
LH RS+ ++ F+YNTL+ +YA +I + + G PD T+P V KA
Sbjct: 62 LHSIRSVLSS-----FSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKAC 116
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ I G +H ++ K+G + D Y+ N+L+ Y C E A +F EMP
Sbjct: 117 GKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMP 168
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N++I S E+I LF M +G++PD V+ A + G VH
Sbjct: 272 SWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEY 331
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I G+ D +IG ++ MYA C I+ A +F+
Sbjct: 332 ILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFN 365
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 61 MP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++ +I + +T E++ F +M + P+ TY V+ +S + + +G
Sbjct: 167 MPVRDVVSWTGIITGFTRTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLG 223
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H LI K GN L+ MY C+++ A +F E+ +
Sbjct: 224 KGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEK 267
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNV 60
+ I L+Q + ++ A + + L H+ I ++ F S+ SL + + LF+ +
Sbjct: 5 KAILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQM 64
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVG 118
P A+N++IR +A++S I++I +++M+ PD T+ FV+KA ++
Sbjct: 65 ECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKC 124
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
VH + + G +D + L++ Y+A + A+ +FD+MP
Sbjct: 125 KEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMP 167
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
S+ R +F+ MP L A+N +I +++ E+++ +++M + D T ++
Sbjct: 155 SVCIARQVFDK-MPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLI 213
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +G +H + GL Y+GN L+ MYA C +D A +FD M
Sbjct: 214 SSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRM 267
>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 1000
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
H + +L L++SLD + +I+ + + S L LF N+ L ++NT+I +Y
Sbjct: 264 HGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYV 323
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S +++K ++ T P++LT+ + A + G VH+++ ++ L +
Sbjct: 324 QNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLL 383
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+GN+L+ MY C ++ A+ +F MP
Sbjct: 384 VGNSLITMYGKCNSMEDAEKVFQSMP 409
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCS 80
A+ L+ SL N + + I + S+ +F + MP + +YN LI YA
Sbjct: 371 AIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQS-MPTHDIVSYNVLIGGYAVLEDG 429
Query: 81 IESIKLFDEMLKTGLRPDNLT----YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+++++F M G++P+ +T + ++D L G +H+ I + G SD+Y+
Sbjct: 430 TKAMQVFSWMRSAGIKPNYITMINIHGSFASSND---LHNYGRPLHAYIIRTGFLSDEYV 486
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
N+L+ MYA C ++ + +F+ +
Sbjct: 487 ANSLITMYAKCGNLESSTNIFNSI 510
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 18 HHHQLP--ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRA 73
H++ P A ++T + Y+ + I + + +L + ++FN++ + ++N +I A
Sbjct: 465 HNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAA 524
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ E++KLF +M G + D + + + + G +H L K GL SD
Sbjct: 525 NVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSD 584
Query: 134 KYIGNTLLRMYAACKEID 151
Y+ N + MY C ++D
Sbjct: 585 SYVVNAAMDMYGKCGKMD 602
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTS 78
QL L +K+ LD ++Y+++ + + + + + P +NTLI YAK
Sbjct: 571 QLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYG 630
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
E+ + F +M+ TG +PD +T+ ++ A L+ G
Sbjct: 631 YFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKG 670
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G ++H+L + GL + YIG LL +Y + + A+ LF EMPE
Sbjct: 60 IACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPE 107
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H LF+ + ++N +I Y+ + +F +M GLRPD T ++
Sbjct: 196 VHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSV 255
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +HSL + L S + N L+ MY+A ++ A+ LF M
Sbjct: 256 CASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI--SLHFTRSLFNNV-MPPLF 65
L + S T QL A + T+L HN + S ++ S L + S+F P F
Sbjct: 7 LFKASTTLRQLAQLHAHIIVTAL-HNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSF 65
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+ L++++ C E+I L+ +ML ++ ++ T+P V++A +GVG VH I
Sbjct: 66 MWGVLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRI 125
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K G D + LL +Y +D A+ +F EMP
Sbjct: 126 IKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMP 161
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NTLI YA+ E++ LF M K G PD+ + + AS + +G +H +
Sbjct: 371 WNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVI 430
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K D+Y+ N+L+ MY+ C +D A +FD+M
Sbjct: 431 KRPFM-DEYVFNSLINMYSKCGYVDLAYMIFDQM 463
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVM-PPLFA 66
+++L+K+AH + LK ++++ ++ S I SL +F NV
Sbjct: 215 VLRLAKSAHGY------ILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTST 268
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I +Y E++ LF M KT + P+++T ++++ L+ G SVH ++
Sbjct: 269 WTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVI 328
Query: 127 KVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDEM 160
K L ++ +G TLL +YAA + D + + E+
Sbjct: 329 KNDLDANLDCLGPTLLELYAATAKHDLCEKILHEI 363
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+ + P + +N++I ++ S ++I LFD M T + + V++A
Sbjct: 459 IFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGF 518
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H + G+ +I L+ MYA C ++ A+ +FD M E
Sbjct: 519 LEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSE 566
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E + F M+ G PD++ VV+A + ++ + S H I K G+ +D+++ ++L+
Sbjct: 183 EGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLI 242
Query: 142 RMYAACKEIDFAKALFDEM 160
MYA C + A+ +F+ +
Sbjct: 243 FMYAKCGSLRSAEIVFENV 261
>gi|302763173|ref|XP_002965008.1| hypothetical protein SELMODRAFT_34767 [Selaginella moellendorffii]
gi|300167241|gb|EFJ33846.1| hypothetical protein SELMODRAFT_34767 [Selaginella moellendorffii]
Length = 295
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92
Y++ F+ + R +F+ V + + +I AY + ES++L+ M
Sbjct: 17 GNYLVKMFVRCG---DIDRAREVFDRVSARDVILWTEMIAAYGERGYFQESLELWKIMRL 73
Query: 93 TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152
G PD + + +K+ +G G +HS+I + GL S+ I N LL MYA C ++
Sbjct: 74 EGAMPDLIAFVTALKSCCCPASLGTGALIHSMILESGLGSNVIIQNALLAMYARCGRLEL 133
Query: 153 AKALFDEMPE 162
A+ LFD MPE
Sbjct: 134 AQLLFDGMPE 143
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+HSL+ + GL D+ IGN L++M+ C +ID A+ +FD +
Sbjct: 1 IHSLVHRHGLAGDRLIGNYLVKMFVRCGDIDRAREVFDRV 40
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + P L ++NT++ Y++ E++KLF EM + PD T ++ +
Sbjct: 344 RQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGM 403
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+L+ G VH++ K +D Y+ + L+ MY+ C +++ AK +FD + E
Sbjct: 404 MLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAE 453
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 51/97 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N+++ + S E+ F +M + G+ P +Y V+ + + G VHS
Sbjct: 456 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 515
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + G +D ++G+ L+ MY+ C ++D A+ +FD M
Sbjct: 516 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMM 552
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 6 IETLIQ--LSKTAHHHHQL-PALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM 61
+ +L+Q + K AH +L A L++ L +T++ +R I + ++ +R LF+ M
Sbjct: 8 LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQ-M 66
Query: 62 PP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-- 117
P ++ +N ++ AY K S ++ LF EM + + N + + L+ V
Sbjct: 67 PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVEC 126
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G H + K+GL ++ Y+GN LL MYA C+ I A F ++PE
Sbjct: 127 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPE 171
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ--CLLIGV-- 117
P ++ ++ A + E+ +LF ML+ + D+++ V+ + C G+
Sbjct: 172 PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHD 231
Query: 118 ----------GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH L K G SD ++ N+LL MYA +D A+ +F MPE
Sbjct: 232 SNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPE 286
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+N +I YA+ C E++ L+++M+ +G +PD +T+ V+ A L+ G
Sbjct: 560 WNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTG 611
>gi|302804817|ref|XP_002984160.1| hypothetical protein SELMODRAFT_16979 [Selaginella moellendorffii]
gi|300148009|gb|EFJ14670.1| hypothetical protein SELMODRAFT_16979 [Selaginella moellendorffii]
Length = 195
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
L ++NTLI Y ++ ++ +F M GL PD LT+ V+ A C L+ G S
Sbjct: 6 LVSWNTLIAGYGQSGDGAVALAMFSRMRDEGLEPDALTFIAVINA---CALLAAREEGVS 62
Query: 121 VHSLIFKVGLH--SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+HS + G H + ++ N+L+ MYA C +D A+ +FD MP
Sbjct: 63 IHS---QAGRHELENTFVANSLVDMYAKCGSLDNARRVFDRMP 102
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI Y K +++ +F EM + G++P LT V+ A + + +G ++H +
Sbjct: 228 SWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNL 287
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+ +D +GN L+ MYA C +D AK +FD M
Sbjct: 288 QNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRM 322
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTL--- 70
++A HQL AL K L H + +S +L+ LP S L PP +L
Sbjct: 1 RSAAGGHQLHALLAKLGLLHRSEFLSA-LLSRLPPSPSALSLLLE--APPAVLSPSLVCP 57
Query: 71 -IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK-----------ASDQCLLIGVG 118
I A++ + ++ LF+ L T+P ++K AS + + G
Sbjct: 58 VIVAFSSSQAPSSALLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKG 117
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H + K+G D+Y+ N L+ MY + A+ FDEMP+
Sbjct: 118 MELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPD 161
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YNT+I AYAK S E+++LF+E+ G+ T+ ++ + IG G +H+
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL ++ + N L+ MY+ C I+ A +F++M +
Sbjct: 502 RVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMED 540
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYA-KTSCSIESIKLFDEMLKTG 94
+I+ + S+ S+ R +F+ ++ +F++ +I Y K E++ LF M+ T
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371
Query: 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154
+ P++ T+ +KA + +G V + K+G S + N+L+ MYA ID A+
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431
Query: 155 ALFD 158
FD
Sbjct: 432 KAFD 435
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+I LF EM+ +G PD T V+ A L+ +G +HS + GL D+ +G L+
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313
Query: 142 RMYAACK---EIDFAKALFDEM 160
MYA C + A+ +FD++
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQI 335
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ ++ ++I +AK + ++++LF +ML+ G+RP+ +TY V+ A L+ G
Sbjct: 543 VISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL------PISLHFTRSLFNNV 60
+ L+ KT H Q+ A L++ +D++ ++ + +L P +L + SLF+++
Sbjct: 16 KGLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHI 75
Query: 61 -MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
PP N L+R +++ ++ L+ + + G D ++P ++KA + + +G
Sbjct: 76 PNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGL 135
Query: 120 SVHSLIFKVGL-HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H L K G H+D +I + L+ MYAAC I A+ LFD+M
Sbjct: 136 EIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKM 177
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I Y++ + +KL++EM +G PD + V+ A + G ++H I
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIK 244
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
G +I +L+ MYA C + A+ ++D++P
Sbjct: 245 DNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLP 279
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 53 TRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ V L ++ +I YA++ +E+++LF+EM + + PD +T V+ A
Sbjct: 302 ARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACAN 361
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +H+ K G I N L+ MYA C + A+ +F+ MP
Sbjct: 362 VGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPR 412
>gi|296089169|emb|CBI38872.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT--------------SLPISLHFTR 54
L+ SKT H +Q+ + + T +N + +R IL L +S HF R
Sbjct: 20 LLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGR 79
Query: 55 SLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
P F +N +I++++ E+ +F+ ML+ G+ D ++ V+KA + L
Sbjct: 80 KHRKQDNP--FLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGL 137
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G +H L+ ++ + SD ++ N L+ +Y C + A+ LFD M
Sbjct: 138 IKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRM 183
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 53 TRSLFNNVMP----PLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVK 107
R LF+ VMP L ++N++I YA++ + + +LF+EM K L +++ ++
Sbjct: 207 ARELFD-VMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL----ISWNSMI- 260
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D C+ G + H L F D ++ YA EID A+ LFDEMPE
Sbjct: 261 --DGCVKCGKMENAHHL-FNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPE 312
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 52 FTRSLFNNV-MPPLFAYNTLIRAYAKTSCSI---ESIKLFDEMLKTGLR-PDNLTYPFVV 106
+ R+LF+ + P F YN+LIRA + + + +++ ++ ML+ G P++ T F +
Sbjct: 79 YARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 138
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
KA +G G +HS F+ GL Y+ LL +YA C+E+ A+ +FD M
Sbjct: 139 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGM 192
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 52 FTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
R++F+ ++ L A++ +I Y++ E++ LF EM + PD +T V+ A
Sbjct: 184 LARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISAC 243
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + +G VH+ I + G+ D + L+ MYA C I+ AK +FD M E
Sbjct: 244 AKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAE 296
>gi|359497810|ref|XP_003635652.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like, partial [Vitis vinifera]
Length = 262
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYA 75
H H + + FL L I++ + L R +F+ MP + + LI ++
Sbjct: 110 HAHLVDSHFLDNHLVLQNIIVNMYAKCGC---LDDARRMFDE-MPTKDMVTWTALIAGFS 165
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ + +++ LF +ML+ GL+P++ T ++KAS + G +H+ K G S Y
Sbjct: 166 QNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVY 225
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+G+ L+ MYA C +D A+ FD MP
Sbjct: 226 VGSALVDMYARCGHMDAAQLAFDGMP 251
>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Glycine max]
Length = 628
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM---------- 61
L AH+ + L T L N + S +TSL I+++ SL ++ +
Sbjct: 36 LQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSL-INMYSKCSLIDHSLRVFNFPTHHN 94
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
+FAYN LI + + ++ L+++M G+ PD T+P V++A V +
Sbjct: 95 KNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKI 154
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H L+FKVGL D ++G+ L+ Y + + A +F+E+P
Sbjct: 155 HGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELP 194
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++N+++ + + +++LFD M+ + ++PD +T V+ A + G +H
Sbjct: 299 IFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIH 358
Query: 123 SLIFKVGL--------HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL D + N L+ MYA C + A+ +F M E
Sbjct: 359 GYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMRE 406
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 44/96 (45%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N ++ +A+ E++ +F M G+ P T V+ G +VH +
Sbjct: 201 WNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVT 260
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G S + N L+ MY CK + A ++F+ M E
Sbjct: 261 KMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDE 296
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 54 RSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R LF+ V+ + ++ T+I Y + S E++KLF EM + G +PD V+ +
Sbjct: 285 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSR 344
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G VH+ K L SD+++ N L+ MYA + AK +FD M E
Sbjct: 345 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 394
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 4 RQIETLIQLSKTAH---HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN 59
R+ L+QLS + + H+ + + + L +T++ + I + S + R +F+
Sbjct: 28 REFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDK 87
Query: 60 VMP--PLFAYNTLIRAYAKTSCSIESIKLF-DEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
MP L +++++ Y++ S E++ +F D K+G P+ V++A Q ++
Sbjct: 88 -MPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVE 146
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H + + G D Y+G +L+ Y+ I+ A+ +FD++ E
Sbjct: 147 KGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSE 192
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
QL +++ D + Y+ + I S ++ R +F+ + + T+I Y K
Sbjct: 150 QLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCG 209
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
S S++LF +M +T + PD V+ A + G +H+ + + G D + N
Sbjct: 210 RSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVN 269
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ Y C + + LFD+M
Sbjct: 270 VLIDFYTKCNRVKAGRKLFDQM 291
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAY 74
Q+ A +K +L+ + ++ + I +L +VM + +YN +I Y
Sbjct: 348 EQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGY 407
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ E+++LF EM P LT+ ++ S + + +H LI K G+ D
Sbjct: 408 SSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDL 467
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ L+ +Y+ C + A+ +F+EM E
Sbjct: 468 FAGSALIDVYSKCSYVKDARHVFEEMNE 495
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 49/95 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N + Y + + E++KL+ + + +P+ T+ ++ A+ + G H+
Sbjct: 498 IVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHN 557
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ K+GL ++ N L+ MYA C I+ A+ +F+
Sbjct: 558 QLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFN 592
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT--------------SLPISLHFTR 54
L+ SKT H +Q+ + + T +N + +R IL L +S HF R
Sbjct: 76 LLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGR 135
Query: 55 SLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
P F +N +I++++ E+ +F+ ML+ G+ D ++ V+KA + L
Sbjct: 136 KHRKQDNP--FLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGL 193
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G +H L+ + + SD ++ N L+ +Y C + A+ LFD M
Sbjct: 194 IKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRM 239
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 53 TRSLFNNVMP----PLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVK 107
R LF+ VMP L ++N++I YA++ + + +LF+EM K L +++ ++
Sbjct: 263 ARELFD-VMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL----ISWNSMI- 316
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D C+ G + H L F D ++ YA EID A+ LFDEMPE
Sbjct: 317 --DGCVKCGKMENAHHL-FNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPE 368
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
+ +N+++RA+ ++ +++ + EML+ PD T+P ++K L VG +H
Sbjct: 43 VLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLH 102
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K LHSD YI TLL MYAAC ++ A+ LF+ M
Sbjct: 103 GQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I Y K C E++ L+ +M + G PD +T +V A + +GVG +HS I
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ + +G+ L+ MYA C ++ A+ +FD++ +
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSD 243
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVK 107
L R +F+ + ++A++ LI Y K + S E+++LF E+ + +RP+ +T V+
Sbjct: 231 LKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A Q + G VH I + + N+L+ M++ C +ID AK +FD M
Sbjct: 291 ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSM 343
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
PL N LIR A+ S + + ++ ++ + GL D+ TYPFV++A + G H
Sbjct: 10 PLRECNLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAH 69
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K G D Y ++L+ MY ++ A+ +FDEMP+
Sbjct: 70 AATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQ 109
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGS 120
L + +I AY + C IE++ LF +M + PD T VV C +G G
Sbjct: 243 LIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFT---VVTLLTCCANLGALDQGQL 299
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H + D +G L+ MYA C ++ + +F+ M
Sbjct: 300 IHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERM 339
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFA 66
+Q+S H A LKT + Y S + + ++ L R +F+ MP +
Sbjct: 59 LQISVEGRKAH---AATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDE-MPQRAVVV 114
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N ++R Y + + E++ L +EM + L PD +T + A + + +G +H+ +
Sbjct: 115 WNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMD 174
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V S + N LL MY ++ A LF++MP
Sbjct: 175 GVTGFSLP-VANALLDMYVKNGCLEEAVNLFEKMP 208
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +YNT+I AYAK S E+++LF+E+ G+ T+ ++ + IG G +H+
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K GL ++ + N L+ MY+ C I+ A +F++M +
Sbjct: 502 RVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMED 540
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYA-KTSCSIESIKLFDEMLKTG 94
+I+ + S+ S+ R +F+ ++ +F++ +I Y K E++ LF M+ T
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371
Query: 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154
+ P++ T+ +KA + +G V + K+G S + N+L+ MYA ID A+
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431
Query: 155 ALFD 158
FD
Sbjct: 432 KAFD 435
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+I LF +M+ +G PD T V+ A L+ +G +HS + GL D+ +G L+
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313
Query: 142 RMYAACK---EIDFAKALFDEM 160
MYA C + A+ +FD++
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQI 335
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ ++ ++I +AK + ++++LF +ML+ G+RP+ +TY V+ A L+ G
Sbjct: 543 VISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597
>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP--PLFAYNTLIRAYAKT 77
Q+ +K +D Y+ + + + + + + + F+ MP + ++N LI Y++
Sbjct: 463 QIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFD-YMPIRDVVSWNALICGYSRN 521
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+++LF +MLK G P T ++ + Q L+ G S+H K GLH D +
Sbjct: 522 GYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVK 581
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
N L MYA C +++ A+ LF+EM
Sbjct: 582 NALTSMYAKCGDLEAAEYLFEEM 604
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
PL ++N++I + + +I+LF +M G PD +T ++ Q + G +H
Sbjct: 804 PLISWNSVISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLH 863
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
S I + L + ++G L+ MY C I A+ +F
Sbjct: 864 SYILRNKLEMEDFVGTALIHMYTKCGSIVHAERVF 898
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 50 LHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L LF +M + ++NT+I AY + E++ +F M+ G+ +T + A
Sbjct: 594 LEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSA 653
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ S+H KVGL D + +L+ MYA D A+ L+ +P+
Sbjct: 654 NANPE------SIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQ 701
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 52 FTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
F R LF+ + L ++N +I + + +I LF M K + P+ +T ++ A
Sbjct: 185 FARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACA 244
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + +G VHSLI S+ Y+ L+ MYA C I A+ LFD MPE
Sbjct: 245 QIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPE 296
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF + L + N +I + + +S++LF E+L +G R + T ++
Sbjct: 82 VEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPV 141
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +H K+G+ S + L +Y E+ FA+ LFDE E
Sbjct: 142 YSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAE 195
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCS 80
+L + N Y+ + I + + S+ R LF+ +MP +N +I Y
Sbjct: 257 SLIKSNRFESNVYVSTALIDMYAKCGSITVARELFD-LMPEKNEVTWNAMISGYGLHGHG 315
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG-GSVHSLIFKVGLH--SDKY-- 135
E++KLF +ML + ++P LT+ V+ A L+ G G H+++ G ++ Y
Sbjct: 316 QEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYAC 375
Query: 136 IGNTLLRMYAACKEIDFAKAL 156
+ + L R K ++F KA+
Sbjct: 376 MVDILGRAGQLKKALEFIKAM 396
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
++++ +F + P +F +NT++R +++ + + L+ +M G++PD T+ F++K
Sbjct: 62 AINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLK 121
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G VH + K G + ++ NTL+ ++ C ++ A+++F ++PE
Sbjct: 122 GCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPE 176
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R+LF+ + +NT+I Y +++++F+EM G PD +T ++ A
Sbjct: 230 RTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADL 289
Query: 113 LLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VG +H I ++ +GN L+ MYA C I+ A +F +M E
Sbjct: 290 GDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMRE 340
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 53 TRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASD 110
+RS+F+ + LF +N +I +Y++ +++F +M+ ++GL PDN T+P VVKA
Sbjct: 136 SRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACA 195
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VG +VH L+ K L D ++ N L+ Y + A +F MPE
Sbjct: 196 GVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPE 247
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 27 LKTSLDHNTYIISRFILTSLPI--SLHFTRSLFNNVMPPLF-AYNTLIRAYAKTSCSIES 83
LK HN +++ + S SL + +F ++ ++N LI Y+++S S
Sbjct: 419 LKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLS 478
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+ + +M +GL PD T ++ A Q + +G VH LI + L D ++ +LL +
Sbjct: 479 LDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSL 538
Query: 144 YAACKEIDFAKALFDEMPE 162
Y C E+ A LFD M +
Sbjct: 539 YIHCGELSTAHVLFDAMED 557
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 60 VMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT----GLRPDNLTYPFVVKASDQCL 113
+MP L ++N++IR ++ S E L +M++ PD T V+ +
Sbjct: 244 IMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDR 303
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
IGVG VH L K+ L + + N L+ MY+ C I+ A+ +F
Sbjct: 304 EIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIF 347
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAY 67
++L + AH + LK L+ N +I I + + S+ + +FN + + ++
Sbjct: 611 LRLGREAHGYA------LKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASW 664
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
N ++ Y + E+IKLF+EM +TG PD LT+ V+ A + L+ G
Sbjct: 665 NAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEG 715
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 44 TSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
T +L R +F+ ++ + ++NTL+ A+ E++ L +M + G RPD+ T
Sbjct: 115 TGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTL 174
Query: 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V+ +C + G VH + G +D ++G++L+ MYA C D++ +FD +P
Sbjct: 175 SSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLP 233
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN--VMPPLFAYNTLIRAYAKTSCSIES 83
++ D++ ++ S I + + ++ +F+N V P+ +N+++ A+ E+
Sbjct: 198 VRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPIL-WNSVLAGCAQNGSVEEA 256
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+ +F ML+TG+RP +T+ ++ + G +H+ + + G + +I ++L+ M
Sbjct: 257 LGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDM 316
Query: 144 YAACKEIDFAKALFDEM 160
Y C EI A +FD M
Sbjct: 317 YCKCGEISIAHHIFDRM 333
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 54/95 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N+LI Y K +++ +F EM + G++P LT V+ A + + +G ++H +
Sbjct: 242 SWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNL 301
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G+ +D +GN L+ MYA C +D AK +FD M
Sbjct: 302 QNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRM 336
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTL----IRAYA 75
HQL AL K L H + +S +L+ LP S L PP +L I A++
Sbjct: 21 HQLHALLAKLGLLHRSEFLSA-LLSRLPPSPSALSLLLE--APPAVLSPSLVCPVIVAFS 77
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK-----------ASDQCLLIGVGGSVHSL 124
+ ++ LF+ L T+P ++K AS + + G +H
Sbjct: 78 SSQAPSSALLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHCR 137
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G D+Y+ N L+ MY + A+ FDEMP+
Sbjct: 138 VLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPD 175
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ +F+ + + + ++N +I YA+T ++++LF EM+KT ++PD T VV A Q
Sbjct: 160 AQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQ 219
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I +G VHS I G S+ I N L+ +Y+ C E++ A L +
Sbjct: 220 SGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLE 266
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + S+F + P +N + R +A +S + ++KL+ M+ GL P+ T+PF++K
Sbjct: 24 GLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLK 83
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + G +H + K+G D Y+ +L+ MYA ++ A+ +FD
Sbjct: 84 SCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFD 134
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 273 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 332
Query: 124 LIFK----VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I K V + + + +L+ MYA C +ID A + D
Sbjct: 333 YIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSD 371
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R LF + + +Y T++ A+ +C +E+I +F +M G+ P+ +T V+
Sbjct: 133 SLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVIS 192
Query: 108 ASDQCLLIGVGG-----SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A VGG +H+L FK+GL + + L+ MY C + A+ LFDE+PE
Sbjct: 193 AYSH-----VGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPE 247
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R LF + + ++ T+I Y + E+++++ ML+TG+ P+ + ++ A
Sbjct: 266 VDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISA 325
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF---------------- 152
+ + + G H +I + G +I T++ YAAC EI+
Sbjct: 326 CGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSW 385
Query: 153 ---------------AKALFDEMPE 162
A+ LFDEMPE
Sbjct: 386 NALISGFVRNGMIEQARQLFDEMPE 410
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94
+IS F+ + + R LF+ MP +F+++++I Y++ +++LF EM+ G
Sbjct: 388 LISGFVRNGM---IEQARQLFDE-MPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGG 443
Query: 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154
++P+ +T V A + G H I + + + L+ MYA C I A
Sbjct: 444 VQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIAL 503
Query: 155 ALFDEMPE 162
LF E+ +
Sbjct: 504 QLFYEIQD 511
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
LT +K+ L + G +HSL+FK GL S+ ++ N+L+ Y C+ I A++LFD
Sbjct: 53 LTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111
>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 745
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 52 FTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ R+LFN V + ++ LI AYA SC + LF EML ++P+N+T ++
Sbjct: 345 YARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCA 404
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ + +G H+ I + GL D + L+ MYA C ++ A++LF+E
Sbjct: 405 EAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNE 453
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 51 HFTRSLFNNVMP--------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLT 101
HF ++ F+N P P YN LI +Y S + M DN
Sbjct: 31 HFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFI 90
Query: 102 YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
P ++KA Q +G +H K G SD ++ N L+ MY C + A+ +FD+MP
Sbjct: 91 LPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMP 150
Query: 162 E 162
E
Sbjct: 151 E 151
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RSLFN M + +NT++ ++ C E+++LF EM G+ P+++T+ + A
Sbjct: 447 ARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSH 506
Query: 112 --------CL--LIGVGG---SVHSLIFKVGLHSDKYIGNTLLRMYAACK 148
CL L+G G H++I + + + I LL AACK
Sbjct: 507 SGLMEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALL---AACK 553
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 53 TRSLFNNVMPPLFAYNTLIRAYAKTSCSI-ESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ LF+ + T++ A SC + E K F+ ML+ L P+ +T ++ +
Sbjct: 245 AQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLIT---E 301
Query: 112 CLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
C +G +G H+ + + G + L+ MY C ++ +A+ALF+
Sbjct: 302 CGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFN 351
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 59/98 (60%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +LI AY+ + E++++F M G+ P+++T+ V+ A + + G ++HS
Sbjct: 465 VISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHS 524
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G SD+++GN L+ MY+ +DFA+ +FD +P
Sbjct: 525 RVVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIP 562
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 22 LPALFLKTSLDHNTYIISRFILTSLPISLH-------FTRSLFNNVMPPLF-AYNTLIRA 73
LP L + + +I F+ +L +S++ F R +F+++ + ++ ++ A
Sbjct: 517 LPGRALHSRVVATGHISDEFVGNAL-VSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVA 575
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ S E+++++ + G RP + + + + + ++H +I + D
Sbjct: 576 LTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPD 635
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N L+ +YA C E++ A+ +FD+M E
Sbjct: 636 LVLSNVLMNVYAKCGELEEARLVFDQMTE 664
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+++LF +M GL+ +N+T+ ++ A G ++ I+ +GL D + + +L
Sbjct: 285 ALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRIYTLGLEYDDVLQDGILS 344
Query: 143 MYAACKEIDFAKALFDEMP 161
++A C + + +FD MP
Sbjct: 345 LHARCGSLVGTREMFDRMP 363
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY-PFVVKASDQCLLIGVGGSVHSL 124
++ T+I YA+ E+++L+ M ++P+ + + P + +D L+ G VH+
Sbjct: 669 SWTTMIGGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVE-GQRVHAR 724
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ GL +++ I L+ MYA C ++ A+ FD
Sbjct: 725 LSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFD 758
Score = 42.7 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL TR +F+ MP + + T+I AY + S+E+++L+ M + PD++ V+
Sbjct: 351 SLVGTREMFDR-MPHRTVVTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVL 406
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+A + + G +VHS I + L+ MY C ++ A+ FD
Sbjct: 407 QACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFD 458
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F++ +I AYA+ +I++F +M+ G + PD +TY V+ A + G +H+
Sbjct: 166 FSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHA 225
Query: 124 LIFKVGLHSDKYIGNTLLRMYA 145
LI G+ S + L+ +Y
Sbjct: 226 LIRSKGVES-AMVSTGLIDLYG 246
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q+ LK+ +D N Y+ ++ + + + R +F+ ++ +F + T+I YA+
Sbjct: 20 QVHDCILKSGMDQNPYVANKLMRVYIRCGKVQDARHVFDKLVKKNVFNWTTMIGGYAEHG 79
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
++I+++++M + G RP+ +TY ++KA + + G +H+ I G SD +
Sbjct: 80 RPADAIEVYNQMRQEGGRPNEVTYLSILKACACPVGLKWGKEIHAHISHGGFRSDVPVQT 139
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA I A+ +FDEM E
Sbjct: 140 ALVNMYAKSGSIKDARLVFDEMAE 163
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 50/99 (50%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F +N +I A+ C E+ LF M + G+ PD +TY ++ AS +G VH
Sbjct: 370 VFTWNAMIGGLAQHGCGQEAFSLFLRMRREGVVPDAITYMSILNASASTGALGWVKEVHR 429
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL SD +GN L+ MY I A+ +FD M E
Sbjct: 430 QAVQAGLDSDVRVGNALVHMYCKTGSISDARLMFDGMVE 468
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +++ +I A+ C E+ LF +M + G+ P+ TY ++ AS + VH+
Sbjct: 269 VISWSAMIGGLAQNGCGHEAFSLFLKMQREGVIPNVTTYVSILTASASAGALEWVKQVHN 328
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL SD + N L+ MYA ID A+ +FD+M
Sbjct: 329 HARKAGLGSDFRVCNALVHMYAKSGSIDDARLVFDQM 365
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG---S 120
+ +N +I A+ E+ LF +M + G PD+ TY ++ A+ C G G
Sbjct: 166 VITWNVMIGGLAQHGFGQEAFSLFLQMQEEGFVPDSTTYLSILTAT-ACSSAGALGWVKE 224
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH K G SD + N L+ +Y+ +D A+ +F+ M
Sbjct: 225 VHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGM 264
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQ 111
R+LF+ + P F YN+LIRA S ++ ++ ML+ G RP++ T F +KA
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G G +H+ + GL + Y+ LL +YA C+++ A+ +FD M
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 236
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM--PPLFAYNTLIRAYAKT 77
QL A L+ L + Y+ + + L + + R++F+ + L A++ ++ Y++
Sbjct: 196 QLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRV 255
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E++ LF EM G+ PD +T V+ A + + +G VH+ I + G+ D +
Sbjct: 256 GMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELS 315
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA C I+ A+ +FD M E
Sbjct: 316 TALIDMYAKCGLIERARGVFDAMVE 340
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQ 111
R+LF+ + P F YN+LIRA S ++ ++ ML+ G RP++ T F +KA
Sbjct: 80 RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G G +H+ + GL + Y+ LL +YA C+++ A+ +FD M
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 187
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM--PPLFAYNTLIRAYAKT 77
QL A L+ L + Y+ + + L + + R++F+ + L A++ ++ Y++
Sbjct: 147 QLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRV 206
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E++ LF EM G+ PD +T V+ A + + +G VH+ I + G+ D +
Sbjct: 207 GMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELS 266
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
L+ MYA C I+ A+ +FD M E
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVE 291
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ + P AYN LIRAY+ +I L+ ML+ + P+ T+PFV+K
Sbjct: 49 QLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLK 108
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + + G ++H+ GLH+D ++ L+ +Y C A+ +F +MP
Sbjct: 109 ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMP 162
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+Y L+ + + E+ +F +M + PD T ++ A + G H +
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV 434
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
GL + I N+L+ MYA C +ID ++ +FD+MP
Sbjct: 435 IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMP 470
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHS 123
++ LI + E+ LF +ML GL L+ V A C + +G +H+
Sbjct: 274 WSALIGGFVLCDRMTEAFNLFKDMLVEGL--CFLSATSVASALRVCASLADLHMGTQLHA 331
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
LI K G+H+D N+LL MYA I+ A FDE+
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEI 368
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIK-LFDEMLKTGLRPDNLTYPFVVKASD 110
R++F + M + A+N ++ YA +I L D GLRP+ T ++
Sbjct: 154 ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLA 213
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDK---YIGNTLLRMYAACKEIDFAKALFDEMP 161
Q + G S+H+ + L ++ IG LL MYA CK++ +A +F MP
Sbjct: 214 QHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMP 267
>gi|302787579|ref|XP_002975559.1| hypothetical protein SELMODRAFT_103498 [Selaginella moellendorffii]
gi|300156560|gb|EFJ23188.1| hypothetical protein SELMODRAFT_103498 [Selaginella moellendorffii]
Length = 547
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 49 SLHFTRSLFNNVMPP---LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPF 104
SL R+ F+ + P +F + ++ AYA+T C ++ LF M G+RP+ +T+
Sbjct: 74 SLAEARAFFDKLSPERRNVFTWTAVMSAYAQTGHCKETALHLFHRMQLEGVRPNLITFAV 133
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
V++A D + +H L + G D +G L+R Y CK +D A+ FD
Sbjct: 134 VLEACDSSRFLDDARLLHKLAMENGFDGDSVVGTILVRTYVLCKSLDDARKTFD 187
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93
T ++ ++L SL R F+ + + L ++ +I+AYA+ E+ L+ M +
Sbjct: 167 TILVRTYVLCK---SLDDARKTFDGLKLKSLVSWTAMIQAYAEKGLDKEAFHLYRGMGQE 223
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
GL+PD ++Y ++ D+ + VG +HS + G D + L+ MY C +++ +
Sbjct: 224 GLQPDRVSYLLLLGTCDRPEKLEVGKRIHSQLAAGGFERDTAVQIALVTMYGRCGDLEAS 283
Query: 154 KALF 157
++F
Sbjct: 284 TSVF 287
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
++ D + K L + Y + A + + +G VH I + G + +GN ++ M
Sbjct: 9 LEFLDSLHKGKLSRNEANYAQALHACTKLKALELGRQVHFEIHRSGFEENLQLGNHVINM 68
Query: 144 YAACKEIDFAKALFDEM-PE 162
YA C + A+A FD++ PE
Sbjct: 69 YAKCGSLAEARAFFDKLSPE 88
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N ++ AY + E+ LF + + GL+P + P + C + ++H +
Sbjct: 300 WNAMLGAYGQNGHPDEAFALFRKFMLLGLKP---SRPSFLTILGLCESLHTARTLHENVV 356
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL + I L+ Y C +D A +FD M +
Sbjct: 357 ESGLEQEFTIQTALISCYGKCGGLDDASKIFDGMED 392
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Query: 33 HNTYIISRFILTSLPI-SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEM 90
N ++ S I I ++ R++F+ V + L +N+LI Y++ E++ F +M
Sbjct: 116 RNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKM 175
Query: 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
G PD +T V+ A Q L+ VG VH +I G+ ++++ N L+ MYA C ++
Sbjct: 176 QNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDL 235
Query: 151 DFAKALFDEM 160
A+ +F+ M
Sbjct: 236 TGARLIFERM 245
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 62 PPLFAYNTLIRAYAKT---SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
P +F +NT IR +++ + S+ LF M L P+N T+ F+ + C+ +G
Sbjct: 52 PTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLG 111
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H ++ K D ++ N+++R Y+ C ++ A+ +FDE E
Sbjct: 112 RQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSE 155
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I YA+ E++ LF EM P++ V+ A Q + G VH I
Sbjct: 191 SWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYI 250
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
K + D + L+ MYA C ID A F
Sbjct: 251 GKKCVRVDSILSAALIDMYAKCGSIDLAMQAF 282
>gi|115484979|ref|NP_001067633.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|62734753|gb|AAX96862.1| Similar to selenium-binding protein [Oryza sativa Japonica Group]
gi|77549625|gb|ABA92422.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644855|dbj|BAF27996.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|125597201|gb|EAZ36981.1| hypothetical protein OsJ_21321 [Oryza sativa Japonica Group]
Length = 582
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 27 LKTSLDHNTYIISRFILT-----SLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCS 80
+K D N +++ I S P++ R LFN + L ++NT++ Y +
Sbjct: 252 VKLGFDANVPMVNALITMYGRCGSAPVA----RVLFNGMSSRTLVSWNTMVAMYEQHGDG 307
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
+++IK F ML + D +T V+ A + +G G VH L GL +D IGN L
Sbjct: 308 VQAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALGTGKWVHELARSHGLDTDARIGNVL 367
Query: 141 LRMYAACKEIDFAKALF 157
+ MYA C EI +AK +F
Sbjct: 368 VDMYAKCGEIAYAKEVF 384
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNVMPPLFAY--NTLIRAYAKTSC-SIESIKLFDEM 90
N + I P L + R +F+ P AY NTL+RA+A + + +++ L+ M
Sbjct: 56 NPAFATSLITAVAPACLAYARRVFD-AAPSRDAYMWNTLLRAHAHSRAHARDALALYARM 114
Query: 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
G+ PD+ TYP V+ A +G + H + L D ++ + L+ MY+ E+
Sbjct: 115 RAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALARDGFVSSALISMYSQEGEV 174
Query: 151 DFAKALFDE 159
A+ +F E
Sbjct: 175 RDAERVFAE 183
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++ YA+ E++ LF +M+ G+ P+ +T + + VG VH +
Sbjct: 192 SWTAMVAGYAQNCFFGEAVTLFSDMVAAGVLPNEITLISFLPCLRGQEWLPVGEMVHGFV 251
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+G ++ + N L+ MY C A+ LF+ M
Sbjct: 252 VKLGFDANVPMVNALITMYGRCGSAPVARVLFNGM 286
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 62 PPLFAYNTLIRAYAK---TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
P YN++IRAY + ++ + M GL DN T PFV+K+ + +G
Sbjct: 141 PSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMG 200
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH +VGL D Y+G +L+ MY C I A+ LFD+M
Sbjct: 201 RCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 242
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG----- 118
L A+NT+I AYA C +E++ +F+ ML+ G++PD +T+ ++ LI G
Sbjct: 383 LIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFN 442
Query: 119 --GSVHSLIFKV 128
G++HS+ +V
Sbjct: 443 DMGTIHSVEPRV 454
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSV 121
+ ++ +I Y + + +++ LFDEML+ G ++P+ +T V+ A Q + G +
Sbjct: 278 IVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRI 337
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
H +GLH + + L MYA C + A+ FD
Sbjct: 338 HDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 374
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+NT+IR Y+++ E+I L+ M+ G+ P +N T+PF++ + + + G VHS I
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
K G SD ++ N L+ +Y+ ++ A+ LFDE
Sbjct: 62 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDE 95
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKT 77
H++ + +K + + ++ + I L S+ +L+ R+LF+ +++ L +YNT+I+ YA+
Sbjct: 55 HEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEV 114
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI- 136
+ ++ LF EM + D +T V+ A + +G ++ + G+ + I
Sbjct: 115 NQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTIL 170
Query: 137 GNTLLRMYAACKEIDFAKALF 157
++ MYA C ID A +F
Sbjct: 171 TAAVMDMYAKCGSIDSALEIF 191
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 45 SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104
S+ +L R + N M F +N++I A+ +I +F E++ TGL+PD +T+
Sbjct: 183 SIDSALEIFRRVGKN-MKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 241
Query: 105 VVKASDQCLLIGVGGSVHSLIFKV 128
V+ A LI G + +F
Sbjct: 242 VLCACGHSGLIEEGKKLFESMFNA 265
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ LFN MP + ++ +I A+ + +++KLF EM+ ++PD +T V+ A
Sbjct: 343 AKKLFNE-MPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACS 401
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ G +VH + + + SD Y+GN L+ MY C +D A +F +M +
Sbjct: 402 HLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKK 453
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLF-DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P L +N LIR +++ E+I ++ D M G+ DNLT+ ++ KA + + G
Sbjct: 119 PTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQV 178
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H + K+G S +I N+L+RMY E+ +A+ +FD+M +
Sbjct: 179 FHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDD 220
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N+LI Y++ + E + LF+ M + + D++T V+ A GV S+
Sbjct: 223 LVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVK 282
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + D Y+GN+L+ MY +D A+ +FD M E
Sbjct: 283 YIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQE 321
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I ++ S E+ K F +ML+ G+ PDN TY ++ + + +G +H+
Sbjct: 496 VVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHA 555
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K L SD YI +TL+ MY+ C + + +F++ P
Sbjct: 556 QIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 593
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ MP + ++N+LI Y + I +F +M + G D T+ V+K+ G
Sbjct: 132 DAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHG 191
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H L K+G D G+ LL MYA CK++D + F MPE
Sbjct: 192 GGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPE 237
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
++LF EM K G+ T+ V ++ + +G +H K +D IG L
Sbjct: 259 GLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLD 318
Query: 143 MYAACKEIDFAKALFDEMP 161
MY C + A+ LF+ +P
Sbjct: 319 MYMKCNNLSDAQKLFNSLP 337
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS------- 120
N ++ Y K +E+ +F+EM+ D +++ ++ A +Q G+
Sbjct: 401 NAILDMYGKCGALVEACLVFEEMVSR----DAVSWNAIIAAHEQ------NGNEEKTLSL 450
Query: 121 -VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H+ I K L D ++G L+ MY+ C ++ A+ L D + E
Sbjct: 451 FIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAE 493
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 53 TRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
TR+L N +N LI YA+ CS ++++ FD ML+ ++PD T ++ A Q
Sbjct: 245 TRNLVN--------WNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQL 296
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G VH I + + + ++ N L+ MYA C ++ +A+ +FD M
Sbjct: 297 GSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGM 344
Score = 40.8 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 70 LIRAYAKTSCSIESIKLFDEML--KTGLRPDNLTYPFVVKASDQCLLI--GVGGSVHSLI 125
L+R YA S E+ ++ + +T +P P ++KA+ G+G S+H+
Sbjct: 26 LVREYASQSLLREAALVYARNVPRRTHHQP---LLPILLKAAATASPAEPGLGKSLHAEA 82
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K D +G T++ MY C + A+ FDEMP+
Sbjct: 83 LKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPD 119
>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
Length = 1215
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYA 75
H + +L L++SLD + +I+ + + S L LF N+ L ++NT+I +Y
Sbjct: 566 HGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYV 625
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S +++K ++ T P++LT+ + A + G VH+++ ++ L +
Sbjct: 626 QNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLL 685
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
+GN+L+ MY C ++ A+ +F MP
Sbjct: 686 VGNSLITMYGKCNSMEDAEKVFQSMP 711
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCS 80
A+ L+ SL N + + I + S+ +F + MP + +YN LI YA
Sbjct: 673 AIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQS-MPTHDIVSYNVLIGGYAVLEDG 731
Query: 81 IESIKLFDEMLKTGLRPDNLT----YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+++++F M G++P+ +T + ++D L G +H+ I + G SD+Y+
Sbjct: 732 TKAMQVFSWMRSAGIKPNYITMINIHGSFASSND---LHNYGRPLHAYIIRTGFLSDEYV 788
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
N+L+ MYA C ++ + +F+ +
Sbjct: 789 ANSLITMYAKCGNLESSTNIFNSI 812
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 18 HHHQLP--ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRA 73
H++ P A ++T + Y+ + I + + +L + ++FN++ + ++N +I A
Sbjct: 767 HNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAA 826
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ E++KLF +M G + D + + + + G +H L K GL SD
Sbjct: 827 NVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSD 886
Query: 134 KYIGNTLLRMYAACKEID 151
Y+ N + MY C ++D
Sbjct: 887 SYVVNAAMDMYGKCGKMD 904
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTS 78
QL L +K+ LD ++Y+++ + + + + + P +NTLI YAK
Sbjct: 873 QLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYG 932
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
E+ + F +M+ TG +PD +T+ ++ A L+ G
Sbjct: 933 YFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKG 972
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G ++H+L + GL + YIG LL +Y + + A+ LF EMPE
Sbjct: 362 IACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPE 409
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H LF+ + ++N +I Y+ + +F +M GLRPD T ++
Sbjct: 498 VHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSV 557
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +HSL + L S + N L+ MY+A ++ A+ LF M
Sbjct: 558 CASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 609
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-----LFAYNTLIRAYAKT- 77
A LK+ L N +++R +S + L ++ P F NTLIRA+A +
Sbjct: 63 AFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLVPSVPIDAFLANTLIRAHAASP 122
Query: 78 --SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
S + + F ML++ P+ T+PF++KA GVG H+ K G +D+Y
Sbjct: 123 LPSARLRAASFFPLMLRSATLPNKFTFPFLLKAC--AAFPGVGVQAHAAALKFGFTTDQY 180
Query: 136 IGNTLLRMYAACKEIDF---AKALFDEM 160
+ NTL+ MY +C +F A+ +FD M
Sbjct: 181 VSNTLIHMY-SCFGGEFLGDARNVFDRM 207
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
++ +I Y ++ S +++ LF EM +G+RPD +T V+ A+ + + V +
Sbjct: 215 WSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVE 274
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G+ + N L+ A C ++D A A+F M E
Sbjct: 275 KEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKE 310
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 52 FTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ + +F++++ + + +I A+ C E+ LF +ML+ G+ PD TY ++ A
Sbjct: 488 YAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACA 547
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ VHS GL SD +GN L+ MYA C +D A+ +FD+M E
Sbjct: 548 STGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLE 599
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 53/93 (56%)
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I YA+ + +++K++ +M + G +P+ +TY ++KA + + G +H+ I + G
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
SD + L+ MY C ID A+ +FD+M E
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVE 93
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +I A+ C E++ LF +M + G PD T+ ++ A+ + VHS
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI 463
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
GL D +GN L+ MYA C +AK +FD+M E
Sbjct: 464 DAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVE 498
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ ++ +F++ +I A+ E+ LF +M + G P+ TY ++
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240
Query: 108 ASDQCLLIGVGG-----SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
AS + G VH K G SD +GN L+ MYA C ID A+ +FD M
Sbjct: 241 AS---AITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM 295
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG---- 119
+ ++N +I A+ C E+ +F +M + G PD+ TY ++ + G
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTH-----VSTGAWEWV 354
Query: 120 -SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VH +VGL SD +G+ + MY C ID A+ +FD++
Sbjct: 355 KEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKL 396
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +I A E+ F +M + G P++ TY ++ A+ + VHS
Sbjct: 96 VISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHS 155
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
GL D +GN L+ MYA ID A+ +FD M E
Sbjct: 156 HAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVE 194
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F+ + P AYN LIRAY+ +I L+ ML+ + P+ T+PFV+KA
Sbjct: 50 LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + G ++H+ GLH+D ++ L+ +Y C A+ +F +MP
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMP 162
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+Y L+ + + E+ +F +M + PD T ++ A + G H +
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV 434
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
GL + I N+L+ MYA C +ID ++ +FD+MP
Sbjct: 435 IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMP 470
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHS 123
++ LI + E+ LF +ML GL L+ V A C + +G +H+
Sbjct: 274 WSALIGGFVLCDRMTEAFNLFKDMLVEGL--CFLSATSVASALRVCASLADLHMGTQLHA 331
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
LI K G+H+D N+LL MYA I+ A FDE+
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEI 368
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIK-LFDEMLKTGLRPDNLTYPFVVKASD 110
R++F + M + A+N ++ YA +I L D GLRP+ T ++
Sbjct: 154 ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLA 213
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDK---YIGNTLLRMYAACKEIDFAKALFDEMP 161
Q + G S+H+ + L ++ IG LL MYA CK++ +A +F MP
Sbjct: 214 QHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMP 267
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFIL----TSLPISLHFTRSLF------- 57
L+ KT+ ++ A + T L N+ + +R +L + P F R +F
Sbjct: 21 LLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREYHVCS 80
Query: 58 ----NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
V P F +N +I++++ +++ LF ML+ G+ D + V+KA +
Sbjct: 81 SSPGGEVEDP-FLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLG 139
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H ++ K GL SD ++ N L+ +Y C + FA+ +FD MP+
Sbjct: 140 FVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQ 188
>gi|449462493|ref|XP_004148975.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 613
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKT 77
HQ A + L NT++I++ I S+ L +F+ + ++ +N+LI Y K
Sbjct: 50 HQSHARVITHGLGQNTFLITKLISAYSICGDLKELNLIFDLASIKTVYIWNSLISGYVKK 109
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+ F+EM K + PD+ T + KAS++ + V S+H ++G SD +
Sbjct: 110 GMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELGNVVVAKSIHGKSLRLGFISDIIVA 169
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY E + LF+EMPE
Sbjct: 170 NSLMSMYFKYGECKESLKLFNEMPE 194
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASD 110
+R +F+ + ++ + ++ YA+ +++ LF EM +K G+ P+ ++ ++ A
Sbjct: 294 SRYVFDQIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACS 353
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G +H + H+D + N L+ Y+ C +++AK +F+
Sbjct: 354 LHAGLMNGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFE 401
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 49 SLHFTRSLF--NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL + + +F ++ ++ TLI AY + +SI+L+++M++ ++PD +T V+
Sbjct: 392 SLEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQITVLAVL 451
Query: 107 KASDQCLLIGVG 118
A + L+ G
Sbjct: 452 SACGRSGLVNEG 463
>gi|449460654|ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 471
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
LH+ +F+++ P F +N LIR Y+ + I +I L+ +M+++G P+ T PFV+K+
Sbjct: 94 LHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKS 153
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L VH ++G+ S Y+ N L+ YA + A +FDEM
Sbjct: 154 CASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEM 205
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I Y + + LF EM +TG +PD T ++ + + +G SVH
Sbjct: 210 LVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHH 269
Query: 124 LIFKVGLHSDKYIGNTLLRM-YAACKEIDFAKALFDEMPE 162
+ G+ D + N LL + Y+ I A+ +FD++PE
Sbjct: 270 YVEITGIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPE 309
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + + ++N++I Y + E++ LF +M +T + PD T V+ A Q
Sbjct: 300 AREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACSQ 359
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G H I + + + N+L+ MY C ++ F E +
Sbjct: 360 IGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGALETVLDFFFEFKD 410
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 24/161 (14%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-------LTSLPISLHFTRSLFNNVMPPLFAYNTLIRA 73
Q A +K ++ II++ I L SLP H M F NT+IRA
Sbjct: 17 QAQAFIVKAGFYNHIPIITKLIAFSSLSPLGSLP---HACALFQETSMDDSFICNTMIRA 73
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA----------SDQC----LLIGVGG 119
Y+ T ++++ +++ M + + D+ TY FV++A DQC ++ G
Sbjct: 74 YSNTVFPLKALLIYNRMQRMDVDSDHFTYNFVLRACARAIKCTEMDDQCFGHHIISRKGS 133
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+H+ I K+G D ++ N+LL +Y+ + FA+ +F+EM
Sbjct: 134 EIHARILKLGFDQDHHVQNSLLLVYSGSGLVGFARLIFNEM 174
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F MP + ++N++I Y ++ LF M + +R +T+ ++ A
Sbjct: 229 ARKVFEE-MPERDVVSWNSIISGYVNVKDYKGALDLFHSMKQWNIRATEVTFISILGACA 287
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +G +H + + + Y+GN ++ MYA C E+ A +F+EM
Sbjct: 288 ELGALEIGKKIHDSLKEKHYRIEGYLGNAIVDMYAKCGELGLALEVFNEM 337
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L + S+F + P L +NT+ R +A S S+ ++KL+ M+ GL P++ ++PF++K
Sbjct: 14 GLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLK 73
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ + + G +H + K+G D Y+ +L+ MYA ++ A +FD
Sbjct: 74 SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFD 124
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+ + + + ++N +I Y +T E+++L+ +M+KT ++PD T VV A Q
Sbjct: 150 ARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQ 209
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I +G +HS I G S+ I N L+ +Y+ C E++ A LF + +
Sbjct: 210 SGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAK 260
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI + + E++ LF EML++G P+++T V+ A I +G +H
Sbjct: 263 VISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHV 322
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ AK +FD M
Sbjct: 323 YINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM 361
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT--------------SLPISLHFTR 54
L+ SKT H +Q+ + + T +N + +R IL L +S HF R
Sbjct: 20 LLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGR 79
Query: 55 SLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
P F +N +I++++ E+ +F+ ML+ G+ D ++ V+KA + L
Sbjct: 80 KHRKQDNP--FLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGL 137
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I G +H L+ ++ + SD ++ N L+ +Y C + A+ LFD M
Sbjct: 138 IKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRM 183
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 53 TRSLFNNVMP----PLFAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNLTYPFVVK 107
R LF+ VMP L ++N++I YA++ + + +LF+EM K L +++ ++
Sbjct: 207 ARELFD-VMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL----ISWNSMI- 260
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D C+ G + H L F D ++ YA EID A+ LFDEMPE
Sbjct: 261 --DGCVKCGKMENAHHL-FNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPE 312
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCS 80
+L AL K+S+ + ++ SL + + N +P AY LIR+Y ++
Sbjct: 108 KLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVP---AYAALIRSYCRSEQW 164
Query: 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
E F M+ G+ PD P ++KA LL +G VH + + + SD ++GN L
Sbjct: 165 DELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNAL 224
Query: 141 LRMYAACKEIDFAKALFDEMPE 162
+ Y+ C ++ ++++F M E
Sbjct: 225 IHFYSNCGDLGSSRSVFHSMQE 246
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N L+ Y E++KLF EML GL+P ++T+ + A I G +H
Sbjct: 605 SWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYA 664
Query: 126 FKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMPE 162
K L K I + L+ MYA C I AK++FD E
Sbjct: 665 AKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVE 702
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLF------------DEMLKTGLRPDNLTYPFVVKAS 109
P + ++N LI + ++ S E++K+F +E+L +RP+ +T + A
Sbjct: 488 PNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPAC 547
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
L G +H + G + ++ + L+ MYA C ++D A +F
Sbjct: 548 ADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVF 595
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 49/99 (49%)
Query: 59 NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P + ++N +I + +++ +F ML P+ +T ++ A + +G
Sbjct: 314 GLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLG 373
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
++H + K G+ + Y+ +++ MY+ C D+A+ +F
Sbjct: 374 KAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVF 412
>gi|356551964|ref|XP_003544342.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 551
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F R V ++N++I Y S E+ LF ++LK G+ PD+ T V+
Sbjct: 222 FDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCAD 281
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G HSL GL S+ +G L+ MY+ C++I A+ FD + E
Sbjct: 282 MASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSE 332
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P ++ +N +I Y + +++LF EM LRPD T ++ A + I G V
Sbjct: 368 PNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQV 427
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
H+ + G SD +IG L+ MYA C ++
Sbjct: 428 HAYSIRAGHDSDVHIGAALVDMYAKCGDV 456
>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKT-SCSIESIKLFDEMLK-TGLRPDNLTYPFV 105
SL + LF+ + P +F YNT+I+A+A + S S+++F M++ +G P+ T+ FV
Sbjct: 37 SLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFV 96
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
KA L + G + K+GL S+ ++ N ++RMYA +D A+ +FD
Sbjct: 97 FKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFD 149
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 19/94 (20%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I Y + C E++ LF EML+T A DQ G +H
Sbjct: 187 VVSWTTIIAGYVQVGCFKEALDLFHEMLQT-------------VALDQ------GRWIHV 227
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I K + ++ + +LL MYA C EIDFA +F
Sbjct: 228 YIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVF 261
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
++ +N +I YA S E+I LF++M + P+ +T+ ++ A L+ G
Sbjct: 271 VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGREAEE 330
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACK 148
+F + + D I LL AC+
Sbjct: 331 TVFNMPMAPDATIWGALL---GACR 352
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
Q+ A +T + N ++ S + + S S+ ++F + + ++ +I Y + +
Sbjct: 299 QIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNA 358
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
CS E+++ F EM G++PD+ T V+ + + G H L GL + N
Sbjct: 359 CSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSN 418
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ +Y C I+ A LFDEM
Sbjct: 419 ALVTLYGKCGSIEDAHRLFDEM 440
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ T++ + +E++ +F M G+ D T+ ++ A G +H+ I
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYIT 305
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++G+ L+ MY+ C+ I A+A+F M
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+YN LI ++ T S++L+ +L+ +RP +T ++ + +G SVH
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++G + ++G+ L+ MYA I A+ +F EM
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
++ L+ YA+ + E+I LF++ML GL+PD +T+ V+ A + L+ G
Sbjct: 447 SWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKG 499
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMPP-LFAYNTLIRAYAKT 77
A +KT L + Y +S+ +L +S HF S+F P L +NT++R A +
Sbjct: 3 AQMVKTGLHNTNYALSK-LLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
S + ++++ M+ G P+ T+PF++K+ + G +H+ + K+G D+Y
Sbjct: 62 SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121
Query: 138 NTLLRMYAACKEIDFAKALFD 158
+L+ MYA ++ A+ +FD
Sbjct: 122 TSLISMYARNGRLEDARKVFD 142
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+ + + ++N +I Y + E+++LF EM++T +RPD T V+ A Q
Sbjct: 168 ARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQ 227
Query: 112 CLLIGVGGSVHSLIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I +G +H+L+ G S I N + +Y+ C +++ A LF+
Sbjct: 228 SGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFE 275
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 37 IISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94
I++ FI L S + LF + + ++NTLI Y + E++ LF EML++G
Sbjct: 253 IVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 312
Query: 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK--VGLHSDKYIGNTLLRMYAACKEIDF 152
P+++T V+ A I +G +H I K G+ + + +L+ MYA C +I+
Sbjct: 313 ESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEA 372
Query: 153 AKALFDEM 160
A +F+ M
Sbjct: 373 AHQVFNSM 380
>gi|357453189|ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359886|gb|ABD32760.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485919|gb|AES67122.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 27 LKTSLDHNTYIISRFILTSLPIS-LHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESI 84
++ + H+ +I ++ + S LH LF+ P F YN+LIRAY + E++
Sbjct: 35 IRLGISHDDFIRTKLVSCYASCSKLHQANILFSFTNRKPTFLYNSLIRAYLSLNLFKETL 94
Query: 85 KLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+F EM + +P D T P V+K+ + +G VH + G D N L+ M
Sbjct: 95 SIFREM-RLSYKPFDCHTLPLVLKSCAGLSALRLGKQVHGAVLVNGFALDLKNSNALINM 153
Query: 144 YAACKEIDFAKALFDEMPE 162
YA C E++FA+ +FD M E
Sbjct: 154 YAKCGELEFARKVFDGMCE 172
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
++LF+ + + + ++ T+I Y + S E+++L EM + G +PD V+ +
Sbjct: 298 KALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSV 357
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G +HS + KV L D ++ N L+ MY+ C +D AK +FD
Sbjct: 358 DALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFD 403
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N+L Y S E+ KL+ ++ + RP+ T+ + A+ + G H+
Sbjct: 511 IVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHN 570
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ K+GL SD +I N L+ MYA C ++ A+ +F
Sbjct: 571 QVMKMGLESDPFITNALVDMYAKCGSVEEAEKIF 604
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAY 74
H Q+ + +K L+H+ ++ + I + S +L + +F+ V + YN +I Y
Sbjct: 361 QHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGY 420
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
++ ++++F EM + P LT+ ++ S L + + +H LI K G DK
Sbjct: 421 SRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDK 480
Query: 135 YIGNTLLRMYAACKEIDFAKALFD 158
+ + L+ +Y+ C I A+ +F+
Sbjct: 481 FTSSALIDVYSKCSCIRDARYVFE 504
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTS 78
Q+ + +K+ + Y+ S +L + + R +F+ V+ + +I Y K+
Sbjct: 163 QVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSG 222
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
S S++LF+ M+++ + PD ++ A + G +H+ + + D N
Sbjct: 223 RSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYN 282
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ Y C + KALFD +
Sbjct: 283 VLIDFYTKCGRVKAGKALFDRL 304
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G VHS + K G D Y+G +L+ +YA EID A+ +FD +
Sbjct: 161 GSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGL 203
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
Q+ A +T + N ++ S + + S S+ ++F + + ++ +I Y + +
Sbjct: 299 QIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNA 358
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
CS E+++ F EM G++PD+ T V+ + + G H L GL + N
Sbjct: 359 CSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSN 418
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ +Y C I+ A LFDEM
Sbjct: 419 ALVTLYGKCGSIEDAHRLFDEM 440
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ T++ + +E++ +F M G+ D T+ ++ A + G +H+ I
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++G+ L+ MY+ C+ I A+A+F M
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+YN LI ++ T S++L+ +L+ +RP +T ++ + +G SVH
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++G + ++G+ L+ MYA I A+ +F EM
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
++ L+ YA+ + E+I LF++ML GL+PD +T+ V+ A + L+ G
Sbjct: 447 SWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKG 499
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q A +K LD + ++ + I L F LF+ + + +I + +
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKYIG 137
+ E++ F EM KTG+ + +T V+KA+ + + G SVH L + G + D +IG
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
++L+ MY C D A+ +FDEMP
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMP 267
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ LI Y ++ C + + +F+EMLK+ + P+ T V+ A + G VH +
Sbjct: 274 WTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + G TL+ +Y C ++ A +F+ + E
Sbjct: 334 KNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHE 369
>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 803
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 65 FAYNTLIRAYAKTSCSI--ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
F +N +I+ + TSC + E+++L+ M+ +G++ D+ TYPFV+K+ + G +H
Sbjct: 92 FVWNVMIKGF--TSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSVTGISSLEEGKKIH 149
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+++ K+ SD Y+ N+L+ +Y A+ +F+EMPE
Sbjct: 150 AMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPE 189
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I AY + + +++LF ++ + L PD+ T ++ A + L + G +H+
Sbjct: 392 LISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHA 451
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I K S+ I N+L+ MYA C +++ A+ F+
Sbjct: 452 YIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFN 486
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
++ A+ +K + Y+ + I + + + MP + ++N++I Y
Sbjct: 147 KIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALE 206
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS-DKYIG 137
S+ LF EMLK G +PD + + A +G +H + + + D +
Sbjct: 207 DGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVM 266
Query: 138 NTLLRMYAACKEIDFAKALF 157
++L MY+ E+ +A+ +F
Sbjct: 267 TSILDMYSKYGEVSYAERIF 286
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ + A+N LI YA+ S ++ F +M + GL+PD +T ++ A C ++ G
Sbjct: 290 IQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPA---CAILE-G 345
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++H + G + L+ MY ++ A+ +FD + E
Sbjct: 346 RTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAE 389
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKT 77
Q+ A +K+ NT I++ + + ++ L R FN+V+ + ++N++I AYA
Sbjct: 447 RQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVH 506
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
S+ LF EM+ + + P+ T+ ++ A
Sbjct: 507 GFGRISVCLFSEMIASKVDPNKSTFASLLAA 537
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+H R LF+ MP +N ++ Y K + +F EM +T P+++T+ V+
Sbjct: 198 IHDARYLFDR-MPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLS 256
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++I G +H L+ GL D + NTLL MYA C + A+ LFD MP+
Sbjct: 257 VCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPK 311
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IR + ++ + +ML G PD T+P+V+KA + +G VH I
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G D ++G++L++ Y+ I A+ LFD MP
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP 209
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHF-TRSLFNNVMPP--LFAYNTLIRAYAKT 77
QL L + + L+ ++ + + + F R LF+ +MP L +N +I Y +
Sbjct: 269 QLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFD-MMPKTDLVTWNGMISGYVQN 327
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E+ LF EM+ ++PD++T+ + + + G +H I + G+ D ++
Sbjct: 328 GFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLK 387
Query: 138 NTLLRMYAACKEIDFAKALFDE 159
+ L+ +Y C++++ A+ +FD+
Sbjct: 388 SALIDIYFKCRDVEMARKIFDQ 409
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N++I + ++ E+I LF +M G + D ++ + A + G +H+ +
Sbjct: 518 CWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFM 577
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ SD + + L+ MY+ C +D A +FD M E
Sbjct: 578 MRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE 614
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ R +F+ P + +I Y + ++++F +L+ +R +++T V+ A
Sbjct: 400 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 459
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ +G +H I K G Y+G+ ++ MYA C +D A F
Sbjct: 460 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTF 508
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
Q+ A +T + N ++ S + + S S+ ++F + + ++ +I Y + +
Sbjct: 299 QIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNA 358
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
CS E+++ F EM G++PD+ T V+ + + G H L GL + N
Sbjct: 359 CSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSN 418
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ +Y C I+ A LFDEM
Sbjct: 419 ALVTLYGKCGSIEDAHRLFDEM 440
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ T++ + +E++ +F M G+ D T+ ++ A + G +H+ I
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++G+ L+ MY+ C+ I A+A+F M
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
+YN LI ++ T S++L+ +L+ +RP +T ++ + +G SVH
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ ++G + ++G+ L+ MYA I A+ +F EM
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
++ L+ YA+ + E+I LF++ML GL+PD +T+ V+ A + L+ G
Sbjct: 447 SWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKG 499
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
ML+ G PDN ++PFV+KA + L+ G +HS K+G+H D ++ N L+ +++C
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 150 IDFAKALFDEMP 161
++ A+A+FD +P
Sbjct: 61 VEAARAVFDMLP 72
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ ++I YA++ E+I+LF EM G D T V+ A + G +H
Sbjct: 112 WTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCE 171
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ + D N L+ MY+ C +I A +F
Sbjct: 172 RNSIEMDLNARNALIGMYSKCGDIQKALEIF 202
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F+ + + L +N+LI YA+ S E+++ F +M G PD +T V+ A Q
Sbjct: 145 ARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQ 204
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L+ G +H ++ G+ ++++ N L+ MYA C ++ A+ +F+ M
Sbjct: 205 LGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMA 254
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISL-HFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
Q A +K LD + ++ + I L F LF+ + + +I + +
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKYIG 137
+ E++ F EM KTG+ + +T V+KA+ + + G SVH L + G + D +IG
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
++L+ MY C D A+ +FDEMP
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMP 267
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ LI Y ++ C + + +F+EMLK+ + P+ T V+ A + G VH +
Sbjct: 274 WTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K + + G TL+ +Y C ++ A +F+ + E
Sbjct: 334 KNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHE 369
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ ++I A+ IE+++LF EM G++P+ +T P ++ A +G G S H
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHG 412
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+V L D ++G+ L+ MYA C I ++ +F+ MP
Sbjct: 413 FAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMP 450
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLI 71
L A + + A + + ++N + + IL S+P P ++++++LI
Sbjct: 42 LKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPD-------------PTVYSFSSLI 88
Query: 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131
A K +SI +F M GL PD P + K + G +H + GL
Sbjct: 89 YALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLD 148
Query: 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D ++ +L MY C + A+ +FD M E
Sbjct: 149 MDAFVQGSLFHMYMRCGRMGDARKVFDRMSE 179
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%)
Query: 58 NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ + P + ++N ++ + ++ E++ +F +M G PD +T V+ + + +
Sbjct: 211 SGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNM 270
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
G +H + K GL DK + + +L MY + LFDE
Sbjct: 271 GRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDE 312
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + P L ++NT++ Y++ E++KLF EM + PD T ++ +
Sbjct: 373 RQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGM 432
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+L+ G VH++ K +D Y+ + L+ MY+ C +++ AK +FD + E
Sbjct: 433 MLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAE 482
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++NTLI A + +++ ++ M + G P + T V+ A + + G
Sbjct: 97 MPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECG 156
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H + K+GL ++ Y+GN LL MYA C+ I A F ++PE
Sbjct: 157 RRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPE 200
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
Q+ A+ K + Y+ S I + S + + +F+ + + +N+++ + S
Sbjct: 440 QVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNS 499
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E+ F +M + G+ P +Y V+ + + G VHS I + G +D ++G+
Sbjct: 500 LDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGS 559
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY+ C ++D A+ +FD M
Sbjct: 560 ALIDMYSKCGDVDAARWVFDMM 581
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 24 ALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSI 81
+ +K LD+N Y+ + + + + + F +V P ++ ++ A +
Sbjct: 161 GISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVN 220
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFV--VKASDQCLLIGV------------GGSVHSLIFK 127
E+ +LF ML+ + D+++ V V + C G+ G VH L K
Sbjct: 221 EAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIK 280
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G SD ++ N+LL MYA +D A+ +F MPE
Sbjct: 281 HGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPE 315
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+N +I YA+ C E++ L+++M+ +G +PD +T+ V+ A L+ G
Sbjct: 589 WNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTG 640
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H+ + + L D ++ N L+ YA C ID ++ LFD+MP+
Sbjct: 23 AGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPK 68
>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 688
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F R V ++N++I Y S E+ LF ++LK G+ PD+ T V+
Sbjct: 222 FDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCAD 281
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G HSL GL S+ +G L+ MY+ C++I A+ FD + E
Sbjct: 282 MASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSE 332
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P ++ +N +I Y + +++LF EM LRPD T ++ A + I G V
Sbjct: 368 PNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQV 427
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
H+ + G SD +IG L+ MYA C ++
Sbjct: 428 HAYSIRAGHDSDVHIGAALVDMYAKCGDV 456
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 45 SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYP 103
SLP + H R + N P A+N++IR +A++ +++I ++ ML + PD T+
Sbjct: 58 SLPYAQHLFRHILN---PQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFS 114
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
F +KA ++ + VH I + G D + L+R Y ++ A+ +FD MPE
Sbjct: 115 FTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPE 173
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+ R +F+N MP L A+N +I Y++ E+++++D M + D T ++
Sbjct: 161 VEIARMVFDN-MPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLS 219
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ + +G +H + + GL + ++GN L+ MYA C +D A +F+ MP
Sbjct: 220 SCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP 273
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 50 LHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ + R LF+ + P F +NT+++ Y K +++ ++ +M G+RPD T+PFV+KA
Sbjct: 85 MSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKA 144
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G +H + K GL + L+ MY E+ A+ LF M E
Sbjct: 145 CAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVE 198
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+N LI +T S ++++ F EM G++PD++T + A + G ++
Sbjct: 201 LVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYE 260
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G+ S+ + N L M A C ++D A LFDEMP+
Sbjct: 261 FAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQ 299
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 59/98 (60%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +LI AY+ + E++++F M G+ P+++T+ V+ A + + G ++HS
Sbjct: 399 VISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHS 458
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G SD+++GN L+ MY+ +DFA+ +FD +P
Sbjct: 459 RVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIP 496
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
F++ +I AYA+ +I++F +M+ G + PD +TY V+ A + G +H+
Sbjct: 197 FSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHA 256
Query: 124 LIFKV---GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
LI ++ GL D + + +L ++A C + + +FD MP
Sbjct: 257 LIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRMP 297
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 50/91 (54%)
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129
+I AYA+ E+++L++EM + G+ P++ T+ V+ A + G VH I +
Sbjct: 1 MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESV 60
Query: 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
D + N LL +YA C +++ ++ +F+ M
Sbjct: 61 ARVDTVLQNALLNLYAKCGDLEESRRIFEAM 91
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 22 LPALFLKTSLDHNTYIISRFILTSLPISLH-------FTRSLFNNVMPPLF-AYNTLIRA 73
LP L + + +I F+ +L +S++ F R +F+++ + ++ ++ A
Sbjct: 451 LPGRALHSRVVATGHISDEFVGNAL-VSMYSKFGRVDFARMVFDSIPVKRYPSWRVMLVA 509
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ S E+++++ + G RP + + + + + ++H +I + D
Sbjct: 510 LTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPD 569
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N L+ +YA C E++ A+ +FD+M E
Sbjct: 570 LVLSNVLMNVYAKCGELEKARLVFDQMTE 598
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY-PFVVKASDQCLLIGVGGSVHSL 124
++ T+I YA+ E+++L+ M ++P+ + + P + +D L+ G VH+
Sbjct: 603 SWTTMIGGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVE-GQRVHAR 658
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ GL +++ I L+ MYA C ++ A+ FD
Sbjct: 659 LSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFD 692
Score = 42.7 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL TR +F+ MP + + T+I AY + S+E+++L+ M + PD++ V+
Sbjct: 285 SLVGTREMFDR-MPHRTVVTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVL 340
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+A + + G +VHS I + L+ MY C ++ A+ FD
Sbjct: 341 QACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFD 392
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 24 ALFLKTSLDHNTYIIS---RFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSC 79
AL + +L H+ +++ RF S LH+ LF+ + P F YNTLIR Y+K+S
Sbjct: 16 ALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSS 75
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL----LIGVGGSVHSLIFKVGLHSDKY 135
+S++LF++M + + PD T+ F++K + LI +H + K+G +
Sbjct: 76 PSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLF 135
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+ N L+ +YAA A +F+EM
Sbjct: 136 VMNALIHLYAARGVPAAAHQVFNEM 160
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
L R +F MP + ++ ++ YA+ S E+++LF EM G+RPD + V+
Sbjct: 180 ELELARQVFYE-MPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVI 238
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + G VH I + G + N L+ MYA C +D A +F+ M
Sbjct: 239 SACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNM 292
>gi|224114537|ref|XP_002332354.1| predicted protein [Populus trichocarpa]
gi|222832075|gb|EEE70552.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%)
Query: 51 HFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
H R+ +V F +N LIR Y + ++++++ M G+ PDN T P V+KA+
Sbjct: 28 HVIRTHVLDVYTAPFHWNNLIRCYTRLGAPNKALQIYVSMSHAGISPDNYTLPIVLKAAC 87
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
QC + +G +HS+ ++GL ++Y + + +Y+ + A +F+E E
Sbjct: 88 QCFSMELGRQLHSIAIRLGLELNEYCESGFISLYSKSGDFGDAYKVFEENLE 139
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKT 77
QL ++ ++ L+ N Y S FI L S +F N+ L ++N +I +
Sbjct: 96 RQLHSIAIRLGLELNEYCESGFISLYSKSGDFGDAYKVFEENLERKLGSWNAIIGGLCQG 155
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVG--LHS 132
+ E I++F EM G +PD++T +V + C ++G + +H +F+ +
Sbjct: 156 GRAKEVIEMFIEMRSCGFKPDDVT---MVSVTSACGILGDLHLALQLHKYVFQAKSFVKP 212
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
D + N+L+ MY C +D A +F M +
Sbjct: 213 DMLMLNSLIDMYGKCGRMDLAYMVFSRMDQ 242
>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 21 QLPALFLKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ L +K LD + Y+ S + + +L R F + P L ++N+++ AY+
Sbjct: 258 QIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEG 317
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-----GGSVHSLIFKVGLHSD 133
E++ LF EM +GLRPD +T ++ C +G G +HS + K+GL D
Sbjct: 318 LLSEALVLFSEMRDSGLRPDGITVRGLL-----CACVGRDALYHGRLIHSYLVKLGLDGD 372
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+LL MYA C ++ A +F E+ +
Sbjct: 373 VSVCNSLLSMYARCSDLSSAMDVFHEIKD 401
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ A A+ + E +KLF + K+ D ++ V+ AS + + VH+ F
Sbjct: 407 WNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAF 466
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL D+ + NTL+ YA C +D A LF+ M
Sbjct: 467 KAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 500
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIG---VGG 119
L ++ ++I +A+ +E++++F EM+ G P+ + +A C +G G
Sbjct: 201 LISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRA---CGAVGSWEYGE 257
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+H L K L D Y+G +L MYA CK +D A+ F
Sbjct: 258 QIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAF 295
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 47/97 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I A+ + + +++ LF ML++G D V+A + +G G VH+
Sbjct: 102 SWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHA 161
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD + N L+ MY+ +D LF+ + +
Sbjct: 162 LKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKD 198
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKT 77
H + A + + NT I + SL ++ + NN +F++++LI YA+
Sbjct: 462 HAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNN--RDVFSWSSLIVGYAQF 519
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF-KVGLHSDKYI 136
+ E+ LF M G+RP+++T+ V+ A + + G +S++ + G+ +
Sbjct: 520 GYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREH 579
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
+ ++ + A ++ A D+MP
Sbjct: 580 CSCIVDLLARAGKLTEAANFIDQMP 604
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 21 QLPALFLKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ L +K LD + Y+ S + + +L R F + P L ++N+++ AY+
Sbjct: 275 QIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEG 334
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-----GGSVHSLIFKVGLHSD 133
E++ LF EM +GLRPD +T ++ C +G G +HS + K+GL D
Sbjct: 335 LLSEALVLFSEMRDSGLRPDGITVRGLL-----CACVGRDALYHGRLIHSYLVKLGLDGD 389
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+LL MYA C ++ A +F E+ +
Sbjct: 390 VSVCNSLLSMYARCSDLSSAMDVFHEIKD 418
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ A A+ + E +KLF + K+ D ++ V+ AS + + VH+ F
Sbjct: 424 WNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAF 483
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL D+ + NTL+ YA C +D A LF+ M
Sbjct: 484 KAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 517
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIG---VGG 119
L ++ ++I +A+ +E++++F EM+ G P+ + +A C +G G
Sbjct: 218 LISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRA---CGAVGSWEYGE 274
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+H L K L D Y+G +L MYA CK +D A+ F
Sbjct: 275 QIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAF 312
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 47/97 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I A+ + + +++ LF ML++G D V+A + +G G VH+
Sbjct: 119 SWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHA 178
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD + N L+ MY+ +D LF+ + +
Sbjct: 179 LKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKD 215
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKT 77
H + A + + NT I + SL ++ + NN +F++++LI YA+
Sbjct: 479 HAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNN--RDVFSWSSLIVGYAQF 536
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF-KVGLHSDKYI 136
+ E+ LF M G+RP+++T+ V+ A + + G +S++ + G+ +
Sbjct: 537 GYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREH 596
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
+ ++ + A ++ A D+MP
Sbjct: 597 CSCIVDLLARAGKLTEAANFIDQMP 621
>gi|334184142|ref|NP_178563.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334302883|sp|Q9SJ73.3|PP148_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g04860
gi|330250783|gb|AEC05877.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 692
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKT 77
Q+ K+ LD Y+ + + L + + + MP +N LI Y++
Sbjct: 70 EQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRN 129
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
++ KLF ML+ G P T ++ QC + G SVH + K GL D +
Sbjct: 130 GYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVK 189
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N L+ Y+ C E+ A+ LF EM +
Sbjct: 190 NALISFYSKCAELGSAEVLFREMKD 214
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIE 82
+ L+ D + ++ S I L + + R F+ ++ +N +I Y + S
Sbjct: 35 MILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDS 94
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+IKLF +M+ + +PD++T+ V+ S ++ G +H L+ + GL +GNTL+
Sbjct: 95 AIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVT 154
Query: 143 MYAACKEIDFAKALFDEMPE 162
+Y+ +++ A+ LFD MP+
Sbjct: 155 VYSKGRQLGDARKLFDMMPQ 174
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRA 73
+ QL L +++ LD + + + + S L R LF+ +MP L +N +I
Sbjct: 128 EYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFD-MMPQIDLVVWNRMIGG 186
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
Y + ++ LF+EM+ G++PD++T+ + + + + +H I + G+ D
Sbjct: 187 YVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILD 246
Query: 134 KYIGNTLLRMYAACKEIDFAKALFD 158
Y+ + L+ +Y C++ A +F+
Sbjct: 247 VYLNSALIDLYFKCRDAVMACKMFN 271
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N++I ++++ E+I LF +M G++ D +T + A + G +H +
Sbjct: 381 CWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFM 440
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD + + L+ MYA C +++ A+ +F+ M E
Sbjct: 441 IKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQE 477
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
Y +I Y + +++++F +L+ + P+ LT+ ++ A I +G +H I
Sbjct: 281 YTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYII 340
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K L +G+ ++ MYA C +D A +F +
Sbjct: 341 KNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRI 374
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
ML G+ PD T+P V+K + +G + +I ++G D ++ ++L+++YA
Sbjct: 1 MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60
Query: 150 IDFAKALFDEM 160
I+ A+ FD+M
Sbjct: 61 IEDARRFFDKM 71
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAY 74
H+ ++ +K + + + + +S I + + L+ R +FN + A+N++I AY
Sbjct: 431 HYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAY 490
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+S+ LF ML+ G++PD++T+
Sbjct: 491 GYHGYLADSLALFHNMLEEGIQPDHITF 518
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 3 SRQIETLIQLSKTAHHHHQ----LPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSL 56
+RQ+E + S A + + A ++ SL ++Y+ ++ + + H TR
Sbjct: 9 TRQVEDAVMASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVF 68
Query: 57 FNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-------DNLTYPFVVKAS 109
P L +N +I+AYA+ +++I ++ ML+ P D TYPF++KA
Sbjct: 69 SQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKAC 128
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + +G VH + + G S+ + N+L+ MY ++ A+ +FD M E
Sbjct: 129 GGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQE 181
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 54 RSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R++FN+ MP + ++ L+ Y +++ F M G PD+++ V+ A Q
Sbjct: 204 RAVFNS-MPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQ 262
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +++ + + + Y+ N L+ MYA C ID A LF+ M E
Sbjct: 263 LGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAE 313
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+H R LF+ MP +N ++ Y K + +F EM +T P+++T+ V+
Sbjct: 198 IHDARYLFDR-MPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLS 256
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++I G +H L+ GL D + NTLL MYA C + A+ LFD MP+
Sbjct: 257 VCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPK 311
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHF-TRSLFNNVMPP--LFAYNTLIRAYAKT 77
QL L + + L+ ++ + + + F R LF+ +MP L +N +I Y +
Sbjct: 269 QLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFD-MMPKTDLVTWNGMISGYVQN 327
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E+ LF EM+ G++PD++T+ + + + G +H I + G+ D ++
Sbjct: 328 GFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLK 387
Query: 138 NTLLRMYAACKEIDFAKALFDE 159
+ L+ +Y C++++ A +FD+
Sbjct: 388 SALIDIYFKCRDVEMAHKIFDQ 409
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IR + ++ + +ML G PD T+P+V+KA + +G VH I
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G D ++G++L++ Y+ I A+ LFD MP
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP 209
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+N++I + ++ E+I LF +M G + D ++ + A + G +H+ +
Sbjct: 518 CWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFM 577
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ SD + + L+ MY+ C +D A +FD M E
Sbjct: 578 MRGAFRSDLFAESALIDMYSKCGNLDLACRVFDMMEE 614
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
+I Y + ++++F +L+ +R +++T V+ A + +G +H I K
Sbjct: 420 AMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN 479
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALF 157
G Y+G+ ++ MYA C ++D A F
Sbjct: 480 GHGGSCYVGSAIMDMYAKCGKLDLAHQTF 508
>gi|449528126|ref|XP_004171057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 415
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
LH+ +F+++ P F +N LIR Y+ + I +I L+ +M+++G P+ T PFV+K+
Sbjct: 38 LHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKS 97
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L VH ++G+ S Y+ N L+ YA + A +FDEM
Sbjct: 98 CASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEM 149
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I Y + + LF EM +TG +PD T ++ + + +G SVH
Sbjct: 154 LVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHH 213
Query: 124 LIFKVGLHSDKYIGNTLLRM-YAACKEIDFAKALFDEMPE 162
+ G+ D + N LL + Y+ I A+ +FD++PE
Sbjct: 214 YVEITGIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPE 253
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH----FTRSLFNNV-MPPL 64
+ + K+ HH+ ++ + +I R L + S H R +F+ + +
Sbjct: 205 LDIGKSVHHYVEITGIEFD--------LILRNALLDIAYSKHGLIRHAREIFDQIPEKNV 256
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N++I Y + E++ LF +M +T + PD T V+ A Q + +G H
Sbjct: 257 ISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACSQIGDLAMGEKTHGC 316
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + + + N+L+ MY C ++ F E +
Sbjct: 317 ICRHSIVITVTLLNSLVDMYVKCGALETVLDFFFEFKD 354
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P F + L++++ C E+I L+ +ML ++ ++ T+P V++A +GVG V
Sbjct: 62 PDSFMWGVLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRV 121
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H I K G D + LL +Y +D A+ +F EMP
Sbjct: 122 HGRIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMP 161
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+NTLI YA+ E++ LF M K G PD+ + + AS + +G +H +
Sbjct: 371 WNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVI 430
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K D+Y+ N+L+ MY+ C +D A +FD+M
Sbjct: 431 KRPFM-DEYVFNSLINMYSKCGYVDLAYMIFDQM 463
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVM-PPLFA 66
+++L+K+AH + LK ++++ ++ S I SL +F NV
Sbjct: 215 VLRLAKSAHGY------ILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTST 268
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+ +I +Y E++ LF M KT + P+++T ++++ L+ G SVH ++
Sbjct: 269 WTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVI 328
Query: 127 KVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDEM 160
K L ++ +G TLL +YAA + D + + E+
Sbjct: 329 KNDLDANLDCLGPTLLELYAATAKHDLCEKILHEI 363
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+F+ + P + +N++I ++ S ++I LFD M T + + V++A
Sbjct: 459 IFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGF 518
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H + G+ +I L+ MYA C ++ A+ +FD M E
Sbjct: 519 LEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSE 566
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E + F M+ G PD++ VV+A + ++ + S H I K G+ +D+++ ++L+
Sbjct: 183 EGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLI 242
Query: 142 RMYAACKEIDFAKALFDEM 160
MYA C + A+ +F+ +
Sbjct: 243 FMYAKCGSLRSAEIVFENV 261
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSI-ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N+ I A AK S+ +++K F EM++ G RP+ +T+ ++ A ++G+G +H+L
Sbjct: 625 SWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHAL 684
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K + D I N LL Y C++++ + +F M E
Sbjct: 685 ILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSE 722
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I Y + +++ L M++ G + D T+ V+ A + G VH+
Sbjct: 728 SWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACA 787
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ L SD +G+ L+ MYA C +ID+A F+ MP
Sbjct: 788 VRACLESDVVVGSALVDMYAKCGKIDYASRFFELMP 823
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R LF+ MP L +++ LI Y + E+ LF ++ +GL P++ ++A
Sbjct: 194 ARKLFDE-MPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQ 252
Query: 111 QCLLIGV--GGSVHSLIFKVGLHSDKYIGNTLLRMYAACK-EIDFAKALFDEM 160
QC G+ G +H+ I K+ SD + N L+ MY+ C ID A +FDE+
Sbjct: 253 QCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEI 305
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N++I E++ F M + G+ P N + + + + +G +H
Sbjct: 524 SWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEG 583
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
FK GL D + N LL +YA I+ + +F +MPE
Sbjct: 584 FKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPE 620
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 118 GGSVHSLIFKVGLHSDKY-IGNTLLRMYAACKEIDFAKALFDEMP 161
G VH+ +F+ GL + IGN L+ MY C ID A ++F MP
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMP 518
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 55 SLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
S F +MP ++++N++I YA+ +++K+F M + G PD++T+ V+ A
Sbjct: 816 SRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHV 875
Query: 113 LLIGVG 118
L+ G
Sbjct: 876 GLVDEG 881
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+ + R LF+ V P YN+LI Y+K S +++K F M + R T P V+KA
Sbjct: 46 IDYARQLFDQVPQPGQILYNSLISTYSKLSLHKDALKTFFSMHHSDTRLSCFTGPPVIKA 105
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
L I VG VHSLI G+ + Y+ +L+ YA E+ A+ +FD
Sbjct: 106 CSSLLAIDVGKQVHSLIVICGIDCNVYVQTSLMDFYAKIGELGSARKIFD 155
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 56/99 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A++ +I YA+ S E+++LF+ M + ++P+++T V+ A Q + +G + S
Sbjct: 294 IVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSACVQLGSVEMGNYIGS 353
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ L S+ Y+ + L+ MY+ C I A+ +F + P+
Sbjct: 354 YVESQDLASNVYVASALVGMYSKCGNISKAREVFGKTPQ 392
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF+++ + ++N +I YA E +K F+ M + P+ +T ++ +
Sbjct: 181 ARRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAK 240
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G + I L + + +L MY C +D A+ FD M +
Sbjct: 241 LGDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQ 291
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT+I A A++ E+++++ ML+ GL P N T V+ A + G H L
Sbjct: 109 SWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLA 168
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
KVGL +++ N LL MY C + A LFD MP
Sbjct: 169 VKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMP 204
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R++F+ + P + +NTL+ Y + E+I LF M ++PD T ++ + +
Sbjct: 372 RAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRL 431
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G VHS ++ LH+D ++ + L+ +Y+ C ++ A +F+ M E
Sbjct: 432 GNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTE 481
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL------- 114
P ++ ++ A+ ++++LF M +TG+R D + V+ A Q
Sbjct: 206 PNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVAR 265
Query: 115 -IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + S+H+L+ + G SD+++GN+L+ +YA ++D A +F+ +
Sbjct: 266 AIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESL 312
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N++I A S S E+ +M + G+ P +Y ++ + I G +H+ +
Sbjct: 487 WNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVL 546
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + Y+G +L+ MYA +D A+ F+ M
Sbjct: 547 KDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM 580
Score = 42.4 bits (98), Expect = 0.071, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
Q+ A LK D N Y+ I + + ++ R FN ++ L A+N +I YA+
Sbjct: 540 QMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNG 599
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
++++LF+ ML T +PD++T+ V+ L+
Sbjct: 600 FGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLV 636
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 33 HNTYIISRFILTSLPISLHFTRSLFNNVMPPL-----FAYNTLIRAYAKTSCSIESIKLF 87
HN + S+ +++ I+L T S+ + + + +NT+IR Y + + E+I ++
Sbjct: 8 HNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVY 67
Query: 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
+ + K GL+ D T FV+KA +I G +H IFK+G + I LL +Y
Sbjct: 68 NHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLF 127
Query: 148 KEIDFAKALFDEMPE 162
E + +FDEMP+
Sbjct: 128 DEDCGLQQIFDEMPQ 142
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
M + ++ +LI Y+ +C E++ F +M +RPD +T VV + +G
Sbjct: 243 MRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEW 302
Query: 121 VHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + K+GL + I N L+ M+A C I+ A +FD M E
Sbjct: 303 ISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEE 345
>gi|224135057|ref|XP_002327556.1| predicted protein [Populus trichocarpa]
gi|222836110|gb|EEE74531.1| predicted protein [Populus trichocarpa]
Length = 362
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+L+ ++ GL+ +N TYPF+ A + G H L+FK GL D+Y+ +L+ MY
Sbjct: 59 ELYYKLKSLGLKANNFTYPFLFIACGNVWGLLHGKIDHRLVFKAGLDGDEYVNRSLITMY 118
Query: 145 AACKEIDFAKALFDEMPE 162
C E+ FA+ +FDEM E
Sbjct: 119 KRCGEMGFARMVFDEMDE 136
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIE 82
L K LD + Y+ I + + F R +F+ + L ++N++I Y+KTS + E
Sbjct: 98 LVFKAGLDGDEYVNRSLITMYKRCGEMGFARMVFDEMDERELVSWNSMISGYSKTSFAKE 157
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+ LF EM + G D +T V+ A C +G+G V + + + + Y+G+ L+
Sbjct: 158 AFGLFMEMREKGFELDEMTLVSVLGA---CGDLGLGRWVEGFVLEKKVEVNSYVGSALID 214
Query: 143 MYAACKEIDFAKALFDEMPE 162
M + + LF+ M E
Sbjct: 215 MCSQNGASNEVIVLFNGMRE 234
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++NT+I A A++ E+++++ ML+ GL P N T V+ A + G H L
Sbjct: 8 SWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLA 67
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
KVGL +++ N LL MY C + A LFD MP
Sbjct: 68 VKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMP 103
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R++F+ + P + +NTL+ Y + E+I LF M ++PD T ++ + +
Sbjct: 271 RAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRL 330
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G VHS ++ LH+D ++ + L+ +Y+ C ++ A +F+ M E
Sbjct: 331 GNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTE 380
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL------- 114
P ++ ++ A+ ++++LF M +TG+R D + V+ A Q
Sbjct: 105 PNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVAR 164
Query: 115 -IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + S+H+L+ + G SD+++GN+L+ +YA ++D A +F+ +
Sbjct: 165 AIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESL 211
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N++I A S S E+ +M + G+ P +Y ++ + I G +H+ +
Sbjct: 386 WNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVL 445
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + Y+G +L+ MYA +D A+ F+ M
Sbjct: 446 KDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM 479
Score = 42.4 bits (98), Expect = 0.071, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTS 78
Q+ A LK D N Y+ I + + ++ R FN ++ L A+N +I YA+
Sbjct: 439 QMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNG 498
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
++++LF+ ML T +PD++T+ V+ L+
Sbjct: 499 FGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLV 535
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R++F ++ P L A+N +I +A S + ES F +M TGL P+++T ++ A
Sbjct: 352 LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCA 411
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +++ G VHS I K+G + D + N+LL MY+ C ++ A +F+++
Sbjct: 412 CSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDI 463
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTL+ A + + + E ++L M + ++PD++T V+ +S Q VG +H
Sbjct: 469 IVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHC 528
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K GL+ D + N L+ MY C ++ A+ +FD +
Sbjct: 529 FIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI 565
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVG 118
++ L ++ ++I +++ +E++ F EML + +P+ + A + L G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+H L K GL SD + G +L MYA C ++ A+ +F
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R +F+++ P + ++++LI YA+ C E+ +LF M G++P+ +T+ ++
Sbjct: 554 SLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILT 613
Query: 108 ASDQCLLIGVG 118
A ++ G
Sbjct: 614 ACSHIGMVEEG 624
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R++F+++ + + ++ ++I Y++ +I L+ +ML++G PD+ T+ +VK
Sbjct: 148 SLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVK 207
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +H+ + K +D N L+ MY ++ A +F +
Sbjct: 208 SCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 82 ESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
E++K FD K P ++TY ++ A + G +H + D + N +
Sbjct: 80 EALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHI 139
Query: 141 LRMYAACKEIDFAKALFDEMP 161
L MY C + A+ +FD MP
Sbjct: 140 LSMYGKCGSLKEARNMFDSMP 160
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N +I ++ S E+ K F +ML+ G+ PDN TY ++ + + +G +H+
Sbjct: 543 VVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHA 602
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I K L SD YI +TL+ MY+ C + + +F++ P
Sbjct: 603 QIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 640
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A+ + +++ LF ML++G+ PD TY V+KA + G +H+ I
Sbjct: 444 SWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI 503
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K L D ++G L+ MY+ C ++ A+ L D + E
Sbjct: 504 IKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAE 540
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
+ MP + ++N+LI Y + I +F +M + G D T+ V+K+ G
Sbjct: 132 DAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHG 191
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +H L K+G D G+ LL MYA CK++D + F MPE
Sbjct: 192 GGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPE 237
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 49 SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L + LFN+ +P L +YN +I YA++ IE++ +F + K+GL D ++
Sbjct: 325 NLSDAQKLFNS-LPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAF 383
Query: 107 KASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+A C +I G VH L K S+ + N +L MY C + A +F+EM
Sbjct: 384 RA---CAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM 437
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
++LF EM K G+ T+ V ++ + +G +H K +D IG L
Sbjct: 259 GLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLD 318
Query: 143 MYAACKEIDFAKALFDEMP 161
MY C + A+ LF+ +P
Sbjct: 319 MYMKCNNLSDAQKLFNSLP 337
>gi|449519723|ref|XP_004166884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 636
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 20 HQLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLFN-NVMPPLFAYNTLIRAYAKT 77
HQ A + L NT++I++ I S+ L +F+ + ++ +N+LI Y K
Sbjct: 50 HQSHARVITHGLGQNTFLITKLISAYSICGDLKELNLIFDLASIKTVYIWNSLISGYVKK 109
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+ F+EM K + PD+ T + KAS++ + V S+H ++G SD +
Sbjct: 110 GMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELGNVVVAKSIHGKSLRLGFISDIIVA 169
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY E + LF+EMPE
Sbjct: 170 NSLISMYFKYGECKESLKLFNEMPE 194
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASD 110
+R +F+ + ++ + ++ YA+ +++ LF EM +K G+ P+ ++ ++ A
Sbjct: 294 SRYVFDQIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACS 353
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ G +H + H+D + N L+ Y+ C +++AK +F+
Sbjct: 354 LHAGLMNGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFE 401
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 49 SLHFTRSLF--NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL + + +F ++ ++ TLI AY + +SI+L+++M++ ++PD +T V+
Sbjct: 392 SLEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQITVLAVL 451
Query: 107 KASDQCLLIGVG 118
A + L+ G
Sbjct: 452 SACGRSGLVNEG 463
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 19/152 (12%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-----LFAYNTLIRAYAKT- 77
A LK+ L N +++R +S + L ++ P F NTLIRA+A +
Sbjct: 48 AFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLRPSVPIDAFLVNTLIRAHAASP 107
Query: 78 --SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI----GVGGSVHSLIFKVGLH 131
S + + F ML++ + P+ T+PF++KA C + GVG H+ K G
Sbjct: 108 LPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKA---CAALPGFPGVGLQAHAAALKFGFA 164
Query: 132 SDKYIGNTLLRMYAACKEIDF---AKALFDEM 160
+D+Y+ NTL+ MY +C +F A+ +FD M
Sbjct: 165 TDQYVSNTLIHMY-SCFGGEFLGDARNVFDRM 195
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R++F+ + + ++ +I Y + S +++ LF EM +G+RPD +T V+ A+
Sbjct: 189 RNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADL 248
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + V + + G+ + N L+ A C ++D A A+F M E
Sbjct: 249 GALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEE 298
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R++F ++ P L A+N +I +A S + ES F +M TGL P+++T ++ A
Sbjct: 352 LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCA 411
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +++ G VHS I K+G + D + N+LL MY+ C ++ A +F+++
Sbjct: 412 CSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDI 463
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTL+ A + + + E ++L M + ++PD++T V+ +S Q VG +H
Sbjct: 469 IVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHC 528
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K GL+ D + N L+ MY C ++ A+ +FD +
Sbjct: 529 FIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI 565
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 60 VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVG 118
++ L ++ ++I +++ +E++ F EML + +P+ + A + L G
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+H L K GL SD + G +L MYA C ++ A+ +F
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R +F+++ P + ++++LI YA+ C E+ +LF M G++P+ +T+ ++
Sbjct: 554 SLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILT 613
Query: 108 ASDQCLLIGVG 118
A ++ G
Sbjct: 614 ACSHIGMVEEG 624
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R++F+++ + + ++ ++I Y++ +I L+ +ML++G PD+ T+ +VK
Sbjct: 148 SLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVK 207
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + +H+ + K +D N L+ MY ++ A +F +
Sbjct: 208 SCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRI 260
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 82 ESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140
E++K FD K P ++TY ++ A + G +H + D + N +
Sbjct: 80 EALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHI 139
Query: 141 LRMYAACKEIDFAKALFDEMP 161
L MY C + A+ +FD MP
Sbjct: 140 LSMYGKCGSLKEARNMFDSMP 160
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRS-LFNNVM--PPLFAYNTLIRAYAKT 77
QL L L+ D N Y+ S IL H + L +VM ++N LI YA+
Sbjct: 139 QLHGLCLRYGYDSNVYV-SCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARK 197
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
++ LF ML+ ++P + TY V+ A + G VH+L+ K G ++G
Sbjct: 198 GQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVG 257
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
NTLL MYA I+ AK +FD + +
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLAK 282
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 52 FTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
+ R LF+ + + + LI Y++ +++ L EML+ GL+P+ T ++KA+
Sbjct: 68 YARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAAS 127
Query: 111 QCLLIGV--GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V G +H L + G S+ Y+ +L MYA C ++ A+ +FD M
Sbjct: 128 GVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVM 179
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G +H+L+ D + NTLL +YA C ++ +A+ LFDEM
Sbjct: 34 GKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEM 76
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-----LTSLPISLHFTRS 55
++ + + +L + A H +L A LK L N +R + L LP S R
Sbjct: 350 LVEQHLASLPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSS----RR 405
Query: 56 LFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+F+ + P F NT++RAYA +++ F M R D+ TY F++KA
Sbjct: 406 VFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMP----RRDSFTYSFLIKALSAA 461
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ V +VHS + K+G D ++GN L+ Y+ A+ +FDEMPE
Sbjct: 462 GVAPVR-AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPE 510
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
SL R++F + + A+N +I AY + ++ F +LK G++PD+ T+ ++
Sbjct: 457 SLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILN 516
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G V SLI + G SD +I N L+ M+ C ++ A LF++MPE
Sbjct: 517 VCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPE 571
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
++++N L+ Y + E+ +L ++M++ G++PD T+ +++ A + GG + S
Sbjct: 170 VYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFS 229
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
LI G +D ++G L+ M+ C +D A +F+ +P
Sbjct: 230 LILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLP 267
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 55 SLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
+LFN+ MP L ++NT+I + + + + F M ++G++PD +T+ ++ A
Sbjct: 564 NLFND-MPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASP 622
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H+LI + L D +G L+ MY C ID A +F +P+
Sbjct: 623 EALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPK 672
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTL 70
+K +L +L L D + ++ + I + + +FNN+ L + ++
Sbjct: 218 AKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSM 277
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
I A+ ++ LF M + G++PD + + ++KA + + G VH+ + +VGL
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGL 337
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFD 158
++ Y+G LL MY C ++ A +F+
Sbjct: 338 DTEIYVGTALLSMYTKCGSMEDALEVFN 365
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMP-PLFAYNTL 70
L + H ++ + L T + T ++S + S+ +FN V + ++ +
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCG---SMEDALEVFNLVKGRNVVSWTAM 378
Query: 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130
I +A+ E+ F++M+++G+ P+ +T+ ++ A + + G +H I K G
Sbjct: 379 IAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGY 438
Query: 131 HSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+D + LL MYA C + A+ +F+ + +
Sbjct: 439 ITDDRVRTALLSMYAKCGSLMDARNVFERISK 470
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G G +H+ I + D ++ N L+ MYA C + AK +FDEMP+
Sbjct: 120 LGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPD 167
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAK 76
HH + L ++ L+++++ + PI L F ++ N+ F YNT+IR
Sbjct: 33 HHDNDLLSIILRSTINFSNN-------AQYPI-LVFHKTPTNS---NTFLYNTMIRGMVS 81
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
++ L+ M K + PD+ T+ FV+KA + L +G +HSL+FK G D ++
Sbjct: 82 KDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFV 141
Query: 137 GNTLLRMYAACKEIDFAKALFDEM 160
++ Y+ C + A +FD+M
Sbjct: 142 KTNVVCFYSKCGFLRDAWKVFDDM 165
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E++ LF +L++GLRPD V++A + + G + + + GL + ++ +L+
Sbjct: 188 EAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLV 247
Query: 142 RMYAACKEIDFAKALFDEMPE 162
MY C ++ A+ +FD M E
Sbjct: 248 DMYTKCGSMEEARFVFDGMVE 268
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 49 SLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ R +F+ V + ++ +I+ YA E+I+LF EM K +RPD +V
Sbjct: 255 SMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYA---MVG 311
Query: 108 ASDQCLLIG---VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A C +G +G L+ S+ +G +L+ YA C ++ A ++ M E
Sbjct: 312 ALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKE 369
>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 578
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L F RS +V+ ++++I +Y +++ SIE++KLF M G P+++T V+ A
Sbjct: 286 LTFERSNVKDVV----MWSSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITAC 341
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G H I K GL+ D YIGN L+ MY+ C + + +F EM
Sbjct: 342 TTLTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQIFKEM 392
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASD--QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
+K + E+ + + + P V+KA C G+ ++S++ K GL SD I N+ +
Sbjct: 11 LKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGI--QLYSIVLKSGLDSDFVICNSFI 68
Query: 142 RMYAACKEIDFAKALFDEMP 161
YA + A +FD MP
Sbjct: 69 SFYAKSSCTESALKVFDTMP 88
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+N+ +N ++ Y K S +IK+F EM + ++P+++T+ V+ +
Sbjct: 115 LFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAM 174
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H + GL D + NTLL MY+ C+ + A+ LFD +P+
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQ 222
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N +IR + ++ + +ML G+ PD T+P+VVKA + +G VH +
Sbjct: 25 AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETV 84
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+GL D ++G++L+++YA + A+ LFD +P+
Sbjct: 85 NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTS 78
+L +KT LD ++ S + + + L +FN + +N++I + ++
Sbjct: 382 ELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG 441
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E+I LF +M G R D ++ + A + G +H L+ K L SD Y +
Sbjct: 442 RPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAES 501
Query: 139 TLLRMYAACKEIDFAKALFDEMPE 162
+L+ MYA C ++F++ +FD M E
Sbjct: 502 SLIDMYAKCGNLNFSRRVFDRMQE 525
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128
T+I Y + E+++ F +++ ++P ++T+ + A + +G +H I K
Sbjct: 331 TMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT 390
Query: 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L ++G+ +L MYA C +D A +F+ + E
Sbjct: 391 KLDEKCHVGSAILDMYAKCGRLDLACRVFNRITE 424
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 50 LHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R LF+ + L ++N +I Y + E+ LF M+ G++PD++T+ +
Sbjct: 210 LQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPC 269
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154
++ L + +H I + + D ++ + L+ +Y C++++ A+
Sbjct: 270 VNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQ 315
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAY 74
H+ ++ L +K L + Y S I + + +L+F+R +F+ + ++N++I AY
Sbjct: 479 HYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAY 538
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
E + LF EML+ G++PD++T+ ++ A
Sbjct: 539 GNHGDLKECLALFHEMLRNGIQPDHVTFLGIISA 572
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILT---SLPISLHFTRSLFNN 59
+R+ L Q K Q+ A + L N ++ I + S+P +L + LF+
Sbjct: 12 NRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDE 71
Query: 60 VMPPLFAY-NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ P + N ++R A++ +++ L+ EM K G+ PD T+ FV+KA + G
Sbjct: 72 IPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNG 131
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ H + + G ++Y+ N L+ +A C ++ A LFD+
Sbjct: 132 FAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDD 172
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISR---FILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAK 76
Q+ A KT+L +T+ +SR F S ++ LF+ + P + +NT+IR Y+K
Sbjct: 68 QIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMIRGYSK 127
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
F +M++ G+ D ++ F +KA +Q L + G SVH +++K+G +
Sbjct: 128 AKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVVWKMGFVYTLLV 187
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
N L+ Y + A+ +FDE+ E
Sbjct: 188 QNGLVHFYGLRGCLGLARLVFDEISE 213
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVK 107
L R +F+ + + ++ ++I Y+K E++KLFD ML G + P+ +T V+
Sbjct: 201 LGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLS 260
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ Q + +G + + + + N +L MY C +D A+ +FD M
Sbjct: 261 SCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTM 313
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 59 NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
NV L N ++ Y K C + ++FD M P T V+ Q + VG
Sbjct: 282 NVTRSLNLMNAILDMYVKCGCLDSAREIFDTM-GAAFAPMENTLACVLPVCGQLGCLDVG 340
Query: 119 GSVHSLIFKVGLHSDKYI-GNTLLRMYAACKEIDFAKALFDEMPE 162
+H ++ + I N L+ MYA C I A +F++MPE
Sbjct: 341 QWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDMPE 385
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+H +FN+ MP L ++N++I AYA + +++ +F+ M+ G +PD++T V+
Sbjct: 373 IHEAAKVFND-MPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLS 431
Query: 108 ASDQCLLIGVG 118
A L+ G
Sbjct: 432 ACSHGGLVAEG 442
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 10 IQLSKTAHHH----HQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-- 63
I+ + H H H LP ++L+T L + SL R +F+ VMP
Sbjct: 74 IREGQRVHAHMIKTHYLPCVYLRTRL---------IVFYVKCDSLRDARHVFD-VMPERN 123
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ +I AY++ + +++ LF +ML++G P+ T+ V+ + +G +HS
Sbjct: 124 VVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHS 183
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K+ + Y+G++LL MYA +I A+ +F +PE
Sbjct: 184 HIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPE 222
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKT 77
Q+ + +K + + + Y+ S + + + +H R +F +P + + +I YA+
Sbjct: 180 QIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQ-CLPERDVVSCTAIISGYAQL 238
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E+++LF + + G++ + +TY V+ A + G VH+ + + + S +
Sbjct: 239 GLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQ 298
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY+ C + +A+ +FD + E
Sbjct: 299 NSLIDMYSKCGNLTYARRIFDTLHE 323
>gi|302783519|ref|XP_002973532.1| hypothetical protein SELMODRAFT_99677 [Selaginella moellendorffii]
gi|300158570|gb|EFJ25192.1| hypothetical protein SELMODRAFT_99677 [Selaginella moellendorffii]
Length = 547
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 49 SLHFTRSLFNNVMPP---LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPF 104
SL R+ F+ + P +F + ++ AYA+T C ++ LF M G+RP+ +T+
Sbjct: 74 SLAEARAFFDKLSPERRNVFTWTAVMSAYAQTGHCKETALHLFHRMQLEGVRPNLITFAV 133
Query: 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
V++A D + +H L + G D +G L+R Y CK +D A+ FD
Sbjct: 134 VLEACDSSRFLDDARLLHRLAMENGFDGDSVVGTILVRTYVLCKSLDDARRTFD 187
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93
T ++ ++L SL R F+ + + L ++ +I+AYA+ E+ L+ M +
Sbjct: 167 TILVRTYVLCK---SLDDARRTFDGLKLKSLVSWTAMIQAYAEKGLDKEAFYLYRGMRQE 223
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
GL+PD ++Y ++ D+ + VG +HS + G D + L+ MY C +++ +
Sbjct: 224 GLQPDRVSYLLMLGTCDRPEKLEVGKRIHSELAAGGFQRDTAVQIALVTMYGRCGDLEAS 283
Query: 154 KALF 157
++F
Sbjct: 284 ASVF 287
Score = 42.4 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ AY + E+ LF + + GL+P + P + C + ++H I
Sbjct: 299 SWNAMLGAYGQNGHPDEAFALFRKFMLLGLKP---SRPSFLTILGLCERLHTARTLHENI 355
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ GL + I L+ Y C +D AK +FD M +
Sbjct: 356 VESGLEHEFTIQTALISCYGKCGGLDDAKKIFDGMED 392
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
++ D + K L + Y + A + + +G VH I + GL + +GN ++ M
Sbjct: 9 LEFLDSLHKGKLSRNEANYAQALHACTKLKALDLGRQVHLEIQRSGLEENLQLGNHVINM 68
Query: 144 YAACKEIDFAKALFDEM-PE 162
YA C + A+A FD++ PE
Sbjct: 69 YAKCGSLAEARAFFDKLSPE 88
>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
Length = 548
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N LI YAK C ++++ F MLK ++PD T V+ A Q + VH+
Sbjct: 247 LVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHN 306
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + + ++++ N L+ M+A C ++ FA+ +FD M
Sbjct: 307 FIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNM 343
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLH---FTRSLFNNVMPP-LFAYNTLIR 72
H +L ++ L ++++ R I L + P + H + R +F+ + P F +N +IR
Sbjct: 32 HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIR 91
Query: 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-----GGSVHSLIFK 127
Y+ +++ +F EM + G+ PDN Y S G+ G ++H+L+ +
Sbjct: 92 GYSSCEAPRDALAVFREMRRRGVSPDN--YTMAAVVSASAAFAGLKWRSNGDAIHALVRR 149
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G SD ++ + L+ Y A + + A +F+EM E
Sbjct: 150 IGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYE 184
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 61 MPPLF--AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++NTLI + + E++++F+EML G+ PD +T V+ A Q + G
Sbjct: 283 MPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKG 342
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VHS I G+ D + N+L+ MYA C ++ A+ +F M
Sbjct: 343 MHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTM 384
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I A A+ + +K+ EM G+ P+ +T ++ A Q + G V++ +
Sbjct: 189 SWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV 248
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
K G+ +D I N L+ MY C + A F MP
Sbjct: 249 GKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMP 284
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++ Y K + LF+EM + + ++ A Q + G +HS I
Sbjct: 391 SWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYI 450
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++ + D + + L+ MYA C ID A +F +M
Sbjct: 451 EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKM 485
>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 548
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N LI YAK C ++++ F MLK ++PD T V+ A Q + VH+
Sbjct: 247 LVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHN 306
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + + ++++ N L+ M+A C ++ FA+ +FD M
Sbjct: 307 FIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNM 343
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPLFA-----------YNTLIRAYAKTSCSIES 83
T I+ F + P + F R +F+ F+ +N +I++++ + +
Sbjct: 50 TRIVLAFAASRRPYXVEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRA 109
Query: 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143
+ LF ML+ G+ D + V+KA + L+ G +H + K GL SD ++ N L+ +
Sbjct: 110 LLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGL 169
Query: 144 YAACKEIDFAKALFDEMPE 162
Y C + FA+ +FD MP+
Sbjct: 170 YLKCGWLGFARQIFDRMPQ 188
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL----------PISLHFTRSLF- 57
L+ KT+H ++L A + T L N + +R +L P F R +F
Sbjct: 21 LLGTCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASASSRRPFLAEFARCVFH 80
Query: 58 -------NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
V P F +N +I++++ +++ L ML+ G+ D ++ +KA
Sbjct: 81 EHHVSSSGEVEDP-FLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACS 139
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ + G VH + K G SD ++ N L+ +Y C + FA+ +FD MP+
Sbjct: 140 RLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQ 191
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIE 82
A+ +++++ +NT +IS + L ++ F +F+ + P ++ LI K E
Sbjct: 75 AMPVRSAVTYNT-VISGLMRNGL-VAAAF--EVFDGMPAPDKVSWTALIDGCVKNGRHDE 130
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
+I F ML G+ PD +T V+ A + +G+G VH L+ + GL + I N+L+
Sbjct: 131 AIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLID 190
Query: 143 MYAACKEIDFAKALFDEM 160
MYA C +++ A+ +F M
Sbjct: 191 MYARCGQVELARQVFSGM 208
>gi|297819530|ref|XP_002877648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323486|gb|EFH53907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 786
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +IR+Y E I++F M ++PD+ T+P V+KA I +G +H K
Sbjct: 14 NVMIRSYVNNGFYREGIQVFVTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATK 73
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VGL S ++GN L+ MY C + A+ + DEM
Sbjct: 74 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 106
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y K + +E+++L+ M G PD ++ V+ A + +G +H
Sbjct: 179 LVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 238
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + L + + N L+ MYA C +D A+ +F+ M
Sbjct: 239 YIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENM 275
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 47 PISLHFTRSLFNNVMPPLFA--YNTLIRAYAKTSCSIES-----IKLFDEMLKTGLRPDN 99
P L + R +F+ V P A YNTL+R YA++S S +++F ML+ G+ PD
Sbjct: 74 PAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDT 133
Query: 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
T+ ++KA G H+L K+G Y+ TL+ MYA C + A+ +F
Sbjct: 134 YTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMF 191
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVH 122
+YN +I A ++S E++ LF EM GL+P ++T V+ C L+G +G VH
Sbjct: 201 SYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVT---VISVLSACALLGALELGRWVH 257
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ K+GL S + L+ MYA C ++ A +F M
Sbjct: 258 DYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGM 295
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
A++ +I AYA E+I LF+EM K G++PD++T+ V+ A L+ G
Sbjct: 302 AWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEG 354
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N L+ AY K ++I++F EM+ +G++P + VV A I G VH+++
Sbjct: 169 SWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMV 228
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++G D + N L+ MY +D A +F++MP+
Sbjct: 229 VRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD 265
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 48/99 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A ++I A ++ +IKLF EML+ GL PD ++ A G VH+
Sbjct: 470 IIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K SD + GN L+ YA C I+ A+ F +PE
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHF-------TRSLFNNVMPP 63
QL++ A LP L +L + ++ S L + IS + R +F+ + P
Sbjct: 10 QLTRYAAAQALLPGAHLHANLLKSGFLAS---LRNHLISFYSKCRRPCCARRVFDEIPDP 66
Query: 64 L-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++++L+ AY+ +I+ F M G+ + P V+K L G VH
Sbjct: 67 CHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL---GAQVH 123
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
++ G SD ++ N L+ MY +D A+ +FDE
Sbjct: 124 AMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDE 160
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +I+L +M +GL P+ ++KA +G +H +
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 329
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K SD YIG L+ MYA +D A +FD M
Sbjct: 330 IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM 364
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N L+ AY K ++I++F EM+ +G++P + VV A I G VH+++
Sbjct: 76 SWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMV 135
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++G D + N L+ MY +D A +F++MP+
Sbjct: 136 VRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD 172
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 48/99 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A ++I A ++ +IKLF EML+ GL PD ++ A G VH+
Sbjct: 377 IIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 436
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K SD + GN L+ YA C I+ A+ F +PE
Sbjct: 437 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 475
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N LI +I+L +M +GL P+ ++KA +G +H +
Sbjct: 177 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 236
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K SD YIG L+ MYA +D A +FD M
Sbjct: 237 IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM 271
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149
M G+ + P V+K L G VH++ G SD ++ N L+ MY
Sbjct: 1 MRAEGVCCNEFALPVVLKCVPDAQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57
Query: 150 IDFAKALFDE 159
+D A+ +FDE
Sbjct: 58 MDDARRVFDE 67
>gi|218201741|gb|EEC84168.1| hypothetical protein OsI_30545 [Oryza sativa Indica Group]
Length = 503
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N L+ AY K ++I++F EM+ +G++P + VV A I G VH+++
Sbjct: 45 SWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMV 104
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++G D + N L+ MY +D A +F++MP+
Sbjct: 105 VRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD 141
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 19/165 (11%)
Query: 17 HHHHQLPALFLKTSLDHNTYIISRFIL---TSLP------ISLHFTRSLFNNVM------ 61
H +H L SL H T I ++ I+ TSLP I+L+ N +
Sbjct: 144 HLNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSIT 203
Query: 62 ----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
+ + +LI + + ++++ LF++M +G P+ T+ ++ AS +++
Sbjct: 204 HHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLH 263
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +HSLI K G ++ ++G L+ MYA C ++ A +FD+MPE
Sbjct: 264 GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPE 308
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAY 74
H QL +L K D N ++ + + + + +H +F+ MP L ++N++I +
Sbjct: 263 HGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQ-MPERNLVSWNSMIVGF 321
Query: 75 AKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+ ++ +F ++L+ + P+ ++ V+ A + G VH ++ K GL
Sbjct: 322 FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPL 381
Query: 134 KYIGNTLLRMYAACKEIDFAKALFD 158
Y+ N+L+ MY C+ D LF
Sbjct: 382 TYVMNSLMDMYFKCRFFDEGVKLFQ 406
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ + + E+ F M + G+ PD ++ V+ +S + G ++H I
Sbjct: 416 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 475
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K+G + I +L+ MYA C + A +F+ + +
Sbjct: 476 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIED 511
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLH--FTRSLFNNVM-PPLFA 66
++L++ +H L L N+++ ++ I + I H +R +F+++ +F
Sbjct: 39 LKLTRQSHSR------ILSLGLSQNSFLATKLIF-AYAICQHPYHSRLVFDSLQHKNVFL 91
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+LI K E+ +LF++M + + PD+ T + K S + + G S+H
Sbjct: 92 WNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G SD + N+++ MY C D ++ +FDEM
Sbjct: 152 RTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEM 185
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
+F++ +I Y + S E++ LF +M + G+ P+ ++ V+ A + G +H
Sbjct: 299 VFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIH 358
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
+ L+++ + N L+ MY+ C +D A+ +F++
Sbjct: 359 GFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFED 395
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLF--NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
SL R +F +++ +++++I Y E+I L+D+ML+ G+RPD +T ++
Sbjct: 385 SLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGIL 444
Query: 107 KASDQCLLIGVGGSVH-SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
A + L+ G +++ S+I G+ I ++ M ++D A +P
Sbjct: 445 SACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIP 500
>gi|357156964|ref|XP_003577636.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 710
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++NT++ Y + S +++IK F ML + D +T V+ A + + G VH
Sbjct: 420 LVSWNTMVAMYEQNSDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALETGKWVHE 479
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L GL +D IGN L+ MYA C EI +A+ +FD + E
Sbjct: 480 LARSHGLDNDARIGNVLVDMYAKCGEIAYAREVFDSLRE 518
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 34 NTYIISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIES--IKLFDEM 90
N + + + P SL + R +F+ ++ +NTL+R +A + +S + L+ M
Sbjct: 183 NPAFATSLLAVAAPCSLAYARRVFDAAPHRDVYMWNTLLRVHAHSHAEPQSSALSLYKRM 242
Query: 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150
G+ PD+ TYP V+ A +G + H + L D ++ + L+ MY C++
Sbjct: 243 RAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALAGDCFVHSALIAMY--CQDG 300
Query: 151 DFAKA 155
D A A
Sbjct: 301 DVADA 305
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 42/95 (44%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++ Y + E+I +F ++ G+ P+ +T + + G VH
Sbjct: 321 SWTAMVAGYVQNCFFGEAIAVFGAVVAEGVLPNEITLISFLPCLQGQEWLTAGEMVHGFA 380
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K+ ++ + N L+ MY C + AK LFD M
Sbjct: 381 LKLRFDANVPLLNALVAMYGKCGSVLSAKGLFDGM 415
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKT-SCSIESIKLFDEMLK-TGLRPDNLTYPFV 105
SL + LF+ + P +F YNT+I+A+A + S S+++F M++ +G P+ T+ FV
Sbjct: 64 SLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFV 123
Query: 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
KA L + G + K+GL S+ ++ N ++RMYA +D A+ +FD
Sbjct: 124 FKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFD 176
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++ T+I Y + C E++ LF EML+TG P+ T + A + + G +H
Sbjct: 214 VVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHV 273
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I K + ++ + +LL MYA C EIDFA +F
Sbjct: 274 YIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVF 307
>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
Length = 766
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 21 QLPALFLKTSLDHNTYI-ISRFILTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
Q+ L +K LD + Y+ S + + +L R F + P L ++N+++ AY+
Sbjct: 275 QIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEG 334
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-----GGSVHSLIFKVGLHSD 133
E++ LF EM +GLRPD +T ++ C +G G +HS + K+GL D
Sbjct: 335 LLSEALVLFSEMRDSGLRPDGITVRGLL-----CACVGRDALYHGRLIHSYLVKLGLDGD 389
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ N+LL MYA C ++ A +F E+ +
Sbjct: 390 VSVCNSLLSMYARCSDLSSAMDVFHEIKD 418
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N+++ A A+ + E +KLF + K+ D ++ V+ AS + + VH+ F
Sbjct: 424 WNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAF 483
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL D+ + NTL+ YA C +D A LF+ M
Sbjct: 484 KAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 517
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIG---VGG 119
L ++ ++I +A+ +E++++F +M+ G P+ + +A C +G G
Sbjct: 218 LISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRA---CGAVGSWEYGE 274
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+H L K L D Y+G +L MYA K +D A+ F
Sbjct: 275 QIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAF 312
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 47/97 (48%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ ++I A+ + + +++ LF ML++G D V+A + +G G VH+
Sbjct: 119 SWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHA 178
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD + N L+ MY+ +D LF+ + +
Sbjct: 179 LKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKD 215
Score = 39.3 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 18 HHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKT 77
H + A + + NT I + SL ++ + NN +F++++LI YA+
Sbjct: 479 HAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNN--RDVFSWSSLIVGYAQF 536
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF-KVGLHSDKYI 136
+ E++ LF M G+RP+++T+ V+ A + + G +S++ + G+ +
Sbjct: 537 GYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREH 596
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
+ ++ + A ++ A D+MP
Sbjct: 597 CSCIVDLLARAGKLTEAANFIDQMP 621
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F++ ++ + S +++ F EM + G+ PDN P V+KA LIG+G VH
Sbjct: 147 VFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHG 206
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G + ++ ++L+ MY C ++ A+ +FD M E
Sbjct: 207 YVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVE 245
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
L F+R L +V+ +N LI +Y + +++ + M LR D++T ++ AS
Sbjct: 339 LVFSRMLEKDVV----TWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 394
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I +G H + L SD + N+++ MYA C+ ID A+ +FD E
Sbjct: 395 AVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTE 447
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L + TLI A++ E+I F +M + G+RP + V+ A + G ++
Sbjct: 518 PNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAI 577
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H I + + +L+ MYA C ID AK +F M
Sbjct: 578 HGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMM 616
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
YN +I AYA ++E++ LF + K G+ PD++T+ ++ A L+ G
Sbjct: 624 YNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEG 675
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I ++ T S E+ + F EML G++PD+ TY V+ I +G +H
Sbjct: 520 LVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHG 579
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
I K + D+YI +TL+ MYA C + + +F++
Sbjct: 580 QIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK 615
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N +I A + C ++I +EML++G+ PD+ TY V+KA + G VH
Sbjct: 421 SWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKA 480
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K GL D ++ +T++ MY C I A+ L D +
Sbjct: 481 IKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRI 515
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 55 SLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113
SLF + P + ++NTLI Y + S+ L EM + G+ D T ++K+
Sbjct: 106 SLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLD 165
Query: 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G +H+L K GL +D G+ L+ MY C+ +D A F M E
Sbjct: 166 DLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGE 214
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N ++ +T E+++LF M ++G+ D ++ V A + G VH L K
Sbjct: 322 NAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVK 381
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G D + N +L +Y CK + A +F EM +
Sbjct: 382 SGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 416
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,314,210,522
Number of Sequences: 23463169
Number of extensions: 85436666
Number of successful extensions: 299569
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6394
Number of HSP's successfully gapped in prelim test: 1480
Number of HSP's that attempted gapping in prelim test: 253807
Number of HSP's gapped (non-prelim): 41848
length of query: 162
length of database: 8,064,228,071
effective HSP length: 123
effective length of query: 39
effective length of database: 9,473,225,580
effective search space: 369455797620
effective search space used: 369455797620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)