BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045917
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 95.9 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 28 KTSLDHNTYIISRFILTSLPI----SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSI 81
K LD++ I++ + S + SL F + +F N F YN+LIR YA +
Sbjct: 57 KQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCN 116
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E+I LF M+ +G+ PD T+PF + A + G G +H LI K+G D ++ N+L+
Sbjct: 117 EAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 142 RMYAACKEIDFAKALFDEMPE 162
YA C E+D A+ +FDEM E
Sbjct: 177 HFYAECGELDSARKVFDEMSE 197
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N + Y + + E++ +F+ M+ +G+RPD ++ + + Q I G S H + +
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S I N L+ MY C D A +FD M
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++ ++I YA+ + +++ LF M++ + P+++T V+ A + + G V++
Sbjct: 202 SWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAF 261
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
I G+ + + + L+ MY C ID AK LFDE
Sbjct: 262 IRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV-GLHSDKYIGNTLL 141
+I+LFD+M++ GL+PD + + + A L+ G + + K+ G+ + ++
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614
Query: 142 RMYAACKEIDFAKALFDEMP 161
+ ++ A L ++MP
Sbjct: 615 DLLGRAGLLEEAVQLIEDMP 634
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI--LTSLP--ISLHFTRSLFNNV-MPPLFAYNTLIRAY 74
+QL L +K+S+ N +SR I T+ P ++L + RS+F ++ P ++ +N++IR Y
Sbjct: 23 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 82
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + +++ + EML+ G PD T+P+V+KA I G VH + K G +
Sbjct: 83 SNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 142
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
Y+ LL MY C E+++ +F+++P+
Sbjct: 143 YVSTCLLHMYMCCGEVNYGLRVFEDIPQ 170
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R LF+ MP L ++N++I Y++ + E++ +F +ML G+ PD +T+ V++
Sbjct: 267 LRTARYLFDG-MPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIR 325
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
AS +G S+H+ + K G D I L+ MYA + + AK F+++ +
Sbjct: 326 ASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEK 380
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 20/165 (12%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAY 67
IQ H +KT + N Y+ + + + +++ +F ++ + A+
Sbjct: 123 IQFGSCVH------GFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAW 176
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+LI + + ++I+ F EM G++ + ++ A +C I G H F
Sbjct: 177 GSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHG--FL 234
Query: 128 VGLHSDKY----------IGNTLLRMYAACKEIDFAKALFDEMPE 162
GL D Y + +L+ MYA C ++ A+ LFD MPE
Sbjct: 235 QGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPE 279
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Query: 3 SRQIETLI--QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTS---LPISLHFTRSLF 57
SR+ + LI +L + H Q+ +SL ++++IIS + S L L F R+L
Sbjct: 11 SRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLL 70
Query: 58 ---NNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
++ P +N L R Y+ + +ESI ++ EM + G++P+ LT+PF++KA L
Sbjct: 71 LHSSDSTPS--TWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLG 128
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + K G D Y+GN L+ +Y CK+ A+ +FDEM E
Sbjct: 129 LTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTE 176
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 20 HQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKT 77
Q+ LK D + Y+ + I L R +F+ + + ++N+++ A +
Sbjct: 133 RQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVEN 192
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
+ F EM+ PD T ++ A L +G VHS + L + +G
Sbjct: 193 GKLNLVFECFCEMIGKRFCPDETTMVVLLSACGGNL--SLGKLVHSQVMVRELELNCRLG 250
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
L+ MYA +++A+ +F+ M
Sbjct: 251 TALVDMYAKSGGLEYARLVFERM 273
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 41 FILTSLPIS--LHFTRSLFNNVMPPL--FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL- 95
F L SLP + + +F+ + P+ F +NTLIR YA+ SI + L+ EM +GL
Sbjct: 58 FYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLV 117
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PD TYPF++KA + +G ++HS++ + G S Y+ N+LL +YA C ++ A
Sbjct: 118 EPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYK 177
Query: 156 LFDEMPE 162
+FD+MPE
Sbjct: 178 VFDKMPE 184
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L A+N++I +A+ E++ L+ EM G++PD T ++ A + + +G VH
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ KVGL + + N LL +YA C ++ AK LFDEM
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
++++ + S+++ S+F + P F +NT+IR Y E++ ++EM++ G
Sbjct: 69 VLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGN 128
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
PDN TYP ++KA + I G +H +FK+GL +D ++ N+L+ MY C E++ + A
Sbjct: 129 EPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSA 188
Query: 156 LFDEM 160
+F+++
Sbjct: 189 VFEKL 193
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
Y+ +I A ++++F +M+K GL PD++ Y V+ A L+ G V + +
Sbjct: 303 YSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEML 362
Query: 127 KVG 129
K G
Sbjct: 363 KEG 365
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 66/100 (66%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
PP + +N +IR ++ + +SI ++ +ML+ GL PD++TYPF++K+S + +GGS+
Sbjct: 71 PPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSL 130
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H + K GL D +I NTL+ MY + ++ A+ LFDEMP
Sbjct: 131 HCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMP 170
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++++I Y K +++++FD+M++ G + + +T V+ A + G +VH I
Sbjct: 208 WSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYI 267
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
V L + +L+ MYA C I A ++F
Sbjct: 268 LDVHLPLTVILQTSLIDMYAKCGSIGDAWSVF 299
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 21 QLPALFLKTSLDHNTYIISRFIL---TSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAK 76
Q+ LF+K +D ++Y + IL S+ +L + R L P F +NTL+R Y++
Sbjct: 23 QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 82
Query: 77 TSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
+ S+ +F EM++ G + PD+ ++ FV+KA + + G +H K GL S +
Sbjct: 83 SDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLF 142
Query: 136 IGNTLLRMYAACKEIDFAKALFDEM 160
+G TL+ MY C ++FA+ +FDEM
Sbjct: 143 VGTTLIGMYGGCGCVEFARKVFDEM 167
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+++T+I A ES F E+ + G+ P+ ++ V+ A Q G +H +
Sbjct: 236 SWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFV 295
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G + N L+ MY+ C + A+ +F+ M E
Sbjct: 296 EKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQE 332
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF TLI Y C + K+FDEM + L N + +D V G+
Sbjct: 141 LFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND------VAGARE- 193
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
IF L + N +L Y E++ AK +F EMP
Sbjct: 194 -IFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMP 230
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSL--DHNTYIISRFILTSLPISLHFTRSLFNNVMPP 63
+ETL +L K+ H +Q+ A ++ L D N I +S SL ++ S+F V P
Sbjct: 13 LETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSP 72
Query: 64 -LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSV 121
+ +N LI+ Y+ E++ + M++TGL RPD T+P V+K + VG SV
Sbjct: 73 GTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSV 132
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H L+ ++G D +G + + Y CK++ A+ +F EMPE
Sbjct: 133 HGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPE 173
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A++ LI YA+ E+ K+F EM ++PD ++ A Q + V S +
Sbjct: 271 AWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYL 330
Query: 126 F-KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++ S Y+ L+ M A C +D A LF+EMP+
Sbjct: 331 HQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQ 368
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
L +Y +++ A C E+I+LF++M+ G+ PD + + ++K Q L+ G
Sbjct: 371 LVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEG 425
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS--------LHFTRSLFNNVMPP-LFAYNTLIRAY 74
L+T L + ++ SR + + S L + +F+ + P LF +N LIR +
Sbjct: 33 GFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCF 92
Query: 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134
+ + ++ + +MLK+ + PDN+T+PF++KAS + + VG HS I + G +D
Sbjct: 93 STGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDV 152
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEM 160
Y+ N+L+ MYA C I A +F +M
Sbjct: 153 YVENSLVHMYANCGFIAAAGRIFGQM 178
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP LF ++ +I YAK +C ++I LF+ M + G+ + V+ +
Sbjct: 202 AREMFDE-MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCA 260
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G + + K + + +G L+ M+ C +I+ A +F+ +PE
Sbjct: 261 HLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 62 PPLFAYNTLIRAYAKTSCSIES-IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P +++N +IR T E+ + L+ M +GL+PD TY FV A + IGVG S
Sbjct: 94 PNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRS 153
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VHS +FKVGL D +I ++L+ MYA C ++ +A+ LFDE+ E
Sbjct: 154 VHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITE 195
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +FN ++ A+ +I Y++ S E+ KLF EM KTG+ PD T V+ A
Sbjct: 284 LDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSA 343
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ +G + + ++ L + Y+ L+ MY C ++ A +F+ MP
Sbjct: 344 CGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMP 396
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 27 LKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESI 84
K L+ + +I I+ + + R LF+ + ++N++I Y++ + +++
Sbjct: 159 FKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAM 218
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF--KVGLHSDKYIGNTLLR 142
LF +M + G PD T ++ A + G + + K+GL + ++G+ L+
Sbjct: 219 DLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLST--FLGSKLIS 276
Query: 143 MYAACKEIDFAKALFDEM 160
MY C ++D A+ +F++M
Sbjct: 277 MYGKCGDLDSARRVFNQM 294
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL----PISLHFTRSLFNNVM 61
I + + +K+ Q A LKT L H+T+ S+ + + P ++ + S+ N +
Sbjct: 42 ILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIG 101
Query: 62 PPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
P F +N++IRAYA +S ++ +F EML + PD ++ FV+KA G
Sbjct: 102 SPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQ 161
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+H L K GL +D ++ NTL+ +Y + A+ + D MP
Sbjct: 162 IHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMP 202
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N ++ AYA C E +++F++ML +PD T V+ A + G VH
Sbjct: 270 SWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVY 329
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
I K G+ + ++ L+ MY+ C +ID A +F
Sbjct: 330 IDKHGIEIEGFLATALVDMYSKCGKIDKALEVF 362
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 62 PP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
PP ++ +N+LIR+Y C+ + + LF M PDN T+PFV KA + +
Sbjct: 86 PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRC 145
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
G S H+L G S+ ++GN L+ MY+ C+ + A+ +FDEM
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAY 67
++ ++AH AL L T N ++ + + + S SL R +F+ + + + ++
Sbjct: 143 VRCGESAH------ALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSW 196
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIG---VGGSVHS 123
N++I +YAK ++++F M G RPDN+T +V C +G +G +H
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNIT---LVNVLPPCASLGTHSLGKQLHC 253
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ + ++GN L+ MYA C +D A +F M
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNM 290
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV---GGSVHS 123
++ I YA+ E++ + +ML +G++P+ +T V+ C +G G +H
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG---CASVGALMHGKEIHC 389
Query: 124 LIFKV-------GLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + + N L+ MYA CK++D A+A+FD +
Sbjct: 390 YAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 53 TRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL--RPDNLTYPFVVK 107
R++F+++ P + + +I Y++ + ++++L EM + RP+ T +
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDK-YIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G +H+ + ++ ++ N L+ MYA C I A+ +FD M
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM 539
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+ + R LF + P + +N++ R Y++ + +E LF E+L+ G+ PDN T+P ++K
Sbjct: 78 SMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLK 137
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + G +H L K+GL + Y+ TL+ MY C+++D A+ +FD + E
Sbjct: 138 ACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVE 192
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP-LFAYNT 69
++K QL L +K LD N Y+ I + + + R +F+ ++ P + YN
Sbjct: 141 VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNA 200
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIF 126
+I YA+ + E++ LF EM L+P+ +T V+ + C L+G +G +H
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSS---CALLGSLDLGKWIHKYAK 257
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K + L+ M+A C +D A ++F++M
Sbjct: 258 KHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKM 291
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 12 LSKTAHHHHQLP---ALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV-MPPLFA 66
L +A H QL A L L + ++I++ I S + F R +F+++ P +F
Sbjct: 27 LIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFP 86
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N +IR Y++ + +++ ++ M + PD+ T+P ++KA + +G VH+ +F
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
++G +D ++ N L+ +YA C+ + A+ +F+ +P
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
LF+ + P L +N +I YAK + E+I +F EM+ +RPD ++ + A Q
Sbjct: 279 LFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGS 338
Query: 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+ S++ + + D +I + L+ M+A C ++ A+ +FD
Sbjct: 339 LEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD 382
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 54 RSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R++F + P + ++ ++ AYA+ +E++++F +M K ++PD + V+ A
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFT 233
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G S+H+ + K+GL + + +L MYA C ++ AK LFD+M
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM 283
>sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3
SV=1
Length = 527
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 19 HHQLPALFLKTSLDHNTYIISRFILTSLPISLH--FTRSLFNNVMPPLFAYNTLIRAYAK 76
HH +P L+ +L ++ ++ + H F R + P FA+N+LI YA+
Sbjct: 115 HHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSP--FAWNSLISGYAE 172
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
+++ L+ +M + G++PD T+P V+KA + +G ++H + K G D Y+
Sbjct: 173 LGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYV 232
Query: 137 GNTLLRMYAACKEIDFAKALFDEMP 161
N L+ MYA C +I A+ +FD +P
Sbjct: 233 LNALVVMYAKCGDIVKARNVFDMIP 257
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 65 FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVH 122
F +NTLIRA A S E+ L+ +ML+ G PD T+PFV+KA G VH
Sbjct: 115 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 174
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I K G D Y+ N L+ +Y +C +D A+ +FDEMPE
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 214
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R +F+ MP L ++N++I A + +++LF EM ++ PD T V+
Sbjct: 202 LDLARKVFDE-MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLS 259
Query: 108 ASDQCLLIGVGGSVHSLIFK---VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G H+ + + V + D + N+L+ MY C + A+ +F M
Sbjct: 260 ACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM 315
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 3 SRQI--ETLIQLSKTAHHHH--QLPALFLKTSLDHNTYIISRFILT-SLPISLHFTRSLF 57
SR+I E L L K A+ + QL A ++ +L + +I + I SL + +F
Sbjct: 15 SRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVF 74
Query: 58 NNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116
N V P + N+LIRA+A+ S ++ +F EM + GL DN TYPF++KA +
Sbjct: 75 NQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLP 134
Query: 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF--AKALFDEMPE 162
V +H+ I K+GL SD Y+ N L+ Y+ C + A LF++M E
Sbjct: 135 VVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSE 182
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 50 LHFTRSLFNNVMPP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+ R +F+ + P + + +I YA+ E+ +L D+M+ +GL+ D ++
Sbjct: 263 MEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + L+ +G +HS++ + L S+ Y+ N LL MYA C + A +F+++P+
Sbjct: 323 AACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK 378
Score = 36.6 bits (83), Expect = 0.069, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ ++ +++L N Y+++ + + + +L +FN++ L ++NT++
Sbjct: 336 RIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHG 395
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
E+I+LF M + G+RPD +T+ V+ + + LI G
Sbjct: 396 HGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEG 435
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
NT+L YA C+E+ A LF++MPE
Sbjct: 220 NTMLDGYARCREMSKAFELFEKMPE 244
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 55/101 (54%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L YN ++++ A + + LF E+ GL PDN T P V+K+ + + G V
Sbjct: 9 PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H K GL D Y+ N+L+ MYA+ +I+ +FDEMP+
Sbjct: 69 HGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQ 109
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F RS +V+ + ++ Y + + E+++LF M G+RPDN ++ Q
Sbjct: 236 FERSPVKDVV----LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQ 291
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ G +H I + + DK +G L+ MYA C I+ A +F E+ E
Sbjct: 292 TGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKE 342
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 27 LKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIES 83
+K L+ ++Y+ + + + + T +F+ MP + ++N LI +Y ++
Sbjct: 73 VKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDE-MPQRDVVSWNGLISSYVGNGRFEDA 131
Query: 84 IKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI---FKVGLHSDKYIGNT 139
I +F M + + L+ D T + A + +G ++ + F++ + IGN
Sbjct: 132 IGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVR----IGNA 187
Query: 140 LLRMYAACKEIDFAKALFDEM 160
L+ M+ C +D A+A+FD M
Sbjct: 188 LVDMFCKCGCLDKARAVFDSM 208
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 6 IETLIQ-----LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV 60
+ET I+ L + H H +L L +S T +++ L + + R +F+ +
Sbjct: 6 LETCIRSRNLVLGQVIHQHLLKRSLTLSSS----TVLVNLTRLYASCNEVELARHVFDEI 61
Query: 61 MPPLF---AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117
P A++ +IRAYA + +++ L+ +ML +G+RP TYPFV+KA I
Sbjct: 62 PHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDD 121
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G +HS + +D Y+ L+ YA C E++ A +FDEMP+
Sbjct: 122 GKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPK 166
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120
+ + +YN+LI ES +LF EM +G+RPD T V+ A +G G S
Sbjct: 371 LKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSS 430
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
H G + I N L+ MY C ++D AK +FD M
Sbjct: 431 CHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTM 470
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 61 MPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGV 117
MP + A+N +I ++ C + I LF +M + GL P+ T + A + +
Sbjct: 164 MPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALRE 223
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
G +VH ++G +D + +L +YA K I +A+ +FD
Sbjct: 224 GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFD 264
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG----G 119
+ ++NT++ + E++ LF+ M +TG+ PD +T ++ A L+ G
Sbjct: 475 IVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFN 534
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
S+ F V D Y N + + A +D A ++MP
Sbjct: 535 SMSRGDFNVIPRIDHY--NCMTDLLARAGYLDEAYDFVNKMP 574
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 1 MISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISR-FILTSLP--ISLHFTRSLF 57
+I R + +L QL +T H ++T + Y S+ F + +L SL + R +F
Sbjct: 36 LIERCV-SLRQLKQTHGH-------MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVF 87
Query: 58 NNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLI 115
+ + P FA+NTLIRAYA + SI F +M+ ++ P+ T+PF++KA+ + +
Sbjct: 88 DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+G S+H + K + SD ++ N+L+ Y +C ++D A +F + E
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 194
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLI 115
N MP + A+N LI AY + E++ +F E+ L+ ++ + +T + A Q +
Sbjct: 322 NSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL 381
Query: 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+G +HS I K G+ + ++ + L+ MY+ C +++ ++ +F+
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFN 424
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++I + + ++++LF +M ++ ++T V+ A + + G V S
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + ++ + + N +L MY C I+ AK LFD M E
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE 295
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 53 TRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +F+++ LF ++ +I AY++ + E KLF M+K G+ PD+ +P +++
Sbjct: 134 ARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCAN 193
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
C + G +HS++ K+G+ S + N++L +YA C E+DFA F M E
Sbjct: 194 CGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRE 244
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 59 NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ +F + +I +++ +F +M G+ P+ +T V A +I G
Sbjct: 312 GITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQG 371
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
VHS+ K+G D +GN+L+ MY+ C +++ A+ +FD
Sbjct: 372 SEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFD 411
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 36/142 (25%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKA-- 108
FTR N+ P + +NT+I Y K E++ LF M K G ++ + T+ ++
Sbjct: 441 FTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYI 500
Query: 109 ----SDQCL---------------------------LIGVG--GSVHSLIFKVGLHSDKY 135
D+ L L+G +H + + L +
Sbjct: 501 QNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHA 560
Query: 136 IGNTLLRMYAACKEIDFAKALF 157
+ N L YA +I++++ +F
Sbjct: 561 VKNALTDTYAKSGDIEYSRTIF 582
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L FT+ N++P F Y + +E+ K D + + G + TY +++
Sbjct: 36 NLSFTKKKEPNIIPDEQFDY------LCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLE 89
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ I +G +H+ F + D ++ LL MYA C I A+ +FD M E
Sbjct: 90 SCIDSGSIHLGRILHAR-FGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRE 143
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ A+N+++ AY + E+++L EM K G+ P +T+ ++ +Q
Sbjct: 247 VIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQ 294
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N IR + +ES+ LF EM + G P+N T+PFV KA + +G VH+ +
Sbjct: 19 AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 78
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K SD ++G + M+ C +D+A +F+ MPE
Sbjct: 79 IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPE 115
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ +I YA+ E++ LF M+K+G +PD +T ++ + + G + +
Sbjct: 324 SWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARA 383
Query: 126 FKVGLHSDKY-IGNTLLRMYAACKEIDFAKALFDEMPE 162
G D I N L+ MY+ C I A+ +FD PE
Sbjct: 384 DIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPE 421
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
S+H R +F+N + + T+I YA +E++KLF +M+ +P+++T+ V++
Sbjct: 408 SIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQ 467
Query: 108 A 108
A
Sbjct: 468 A 468
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++N++ +AY+ + ++ L+ ML+ +PD T+ + + + G +HS
Sbjct: 221 VVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHS 280
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G D NT + MY+ ++ A+ LFD M
Sbjct: 281 HAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIM 317
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA-SDQCLLIGVGGS 120
P + +N +I+ ++K C E ++L+ MLK G+ PD+ T+PF++ + G
Sbjct: 97 PDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK 156
Query: 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
+H + K GL S+ Y+ N L++MY+ C +D A+ +FD
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFD 194
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 49 SLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106
+L R+ F+ MP ++ +I Y + C ES+++F EM G+ PD T V+
Sbjct: 317 NLKLARTYFDQ-MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375
Query: 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A + +G + + I K + +D +GN L+ MY C + A+ +F +M +
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQ 431
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 27 LKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESI 84
+K L N Y+ + + + SL + R +F+ +F++N +I Y + ESI
Sbjct: 162 VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESI 221
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+L EM + + P ++T V+ A + + VH + + + N L+ Y
Sbjct: 222 ELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAY 281
Query: 145 AACKEIDFAKALFDEM 160
AAC E+D A +F M
Sbjct: 282 AACGEMDIAVRIFRSM 297
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ A+ L+T ++++ + + I + + R +F+ + P +F +NTL + Y +
Sbjct: 29 KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
ES+ L+ +M G+RPD TYPFVVKA Q G ++H+ + K G +
Sbjct: 89 LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVAT 148
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY E+ A+ LF+ M
Sbjct: 149 ELVMMYMKFGELSSAEFLFESM 170
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R LF + + +++T+I YA S E++ LF M GLRP+ +T+ V+ A
Sbjct: 264 ARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSH 323
Query: 112 CLLIGVGGSVHSLIFK 127
L+ G SL+ +
Sbjct: 324 AGLVNEGKRYFSLMVQ 339
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 38 ISRFILTSLPIS------LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDE 89
+S IL++L ++ + + R LF MP L +YN +IR Y + ++I +F
Sbjct: 47 VSGHILSTLSVTYALCGHITYARKLFEE-MPQSSLLSYNIVIRMYVREGLYHDAISVFIR 105
Query: 90 MLKTGLR--PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147
M+ G++ PD TYPFV KA+ + + +G VH I + DKY+ N LL MY
Sbjct: 106 MVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNF 165
Query: 148 KEIDFAKALFDEM 160
+++ A+ +FD M
Sbjct: 166 GKVEMARDVFDVM 178
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 48/97 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NT+I Y + +++ +FD M+ + D+ T ++ + +G +VH
Sbjct: 183 VISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHK 242
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L+ + L + N L+ MY C +D A+ +FD M
Sbjct: 243 LVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRM 279
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ + +I Y + +++L M G+RP+ +T +V L + G +H
Sbjct: 284 VITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHG 343
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ ++SD I +L+ MYA CK +D +F
Sbjct: 344 WAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVF 377
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162
+I +TL YA C I +A+ LF+EMP+
Sbjct: 50 HILSTLSVTYALCGHITYARKLFEEMPQ 77
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 35 TYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT- 93
T II+ + + P F + LF +N +I +Y++ E ++ F EM+ T
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALRS--KNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181
Query: 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153
L PD+ TYP V+KA +G+G +VH L+ K GL D ++GN L+ Y + A
Sbjct: 182 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 241
Query: 154 KALFDEMPE 162
LFD MPE
Sbjct: 242 LQLFDIMPE 250
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 8 TLIQLSKTAHHHHQLPAL------FLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNV 60
T++ H LP+L LK +N + + F+ + SL + + +F+ +
Sbjct: 397 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 456
Query: 61 MPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
+ ++N LI +A+++ S+ +M +GL PD+ T ++ A + + +G
Sbjct: 457 RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 516
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
VH I + L D ++ ++L +Y C E+ +ALFD M +
Sbjct: 517 EVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 59 NVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKT----GLRPDNLTYPFVVKASDQC 112
++MP L ++N++IR ++ S ES L EM++ PD T V+ +
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 305
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
IG+G VH K+ L + + N L+ MY+ C I A+ +F
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 350
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPPLFA-Y 67
++L + AH A LK L+ + +I I + + S+ + +FN + A +
Sbjct: 613 LRLGREAH------AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 666
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
N +I Y + E+IKLF+EM +TG PD+LT+ V+ A + LI G
Sbjct: 667 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEG 717
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI-SLHFTRSLFNNVM- 61
+QI+TLI ++ T +H Q+ + L H+T++++ + +L ++ LF++
Sbjct: 14 QQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQF 73
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P +F YN+LI + E++ LF + K GL T+P V+KA + +G +
Sbjct: 74 PNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDL 133
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
HSL+ K G + D +LL +Y+ ++ A LFDE+P+
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPD 174
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP-PLFAYNTLIRAYAKTS 78
L +L +K +H+ ++ + + S L+ LF+ + + + L Y +
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGLHSDKY 135
E+I LF +M++ G++PD+ F+V+ C+ +G G + + ++ + + +
Sbjct: 192 RHREAIDLFKKMVEMGVKPDSY---FIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSF 248
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMPE 162
+ TL+ +YA C +++ A+++FD M E
Sbjct: 249 VRTTLVNLYAKCGKMEKARSVFDSMVE 275
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 53 TRSLFNN-VMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
RS+F++ V + ++T+I+ YA S E I+LF +ML+ L+PD + + +
Sbjct: 266 ARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCAS 325
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G SLI + ++ ++ N L+ MYA C + +F EM E
Sbjct: 326 LGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKE 376
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILT----SLPISLHFTRSLFNNVMPPLFAYNTLIRAYAK 76
Q+ L+ LD + YI+++ I T +P+ + R + F + +IR YA
Sbjct: 67 QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAI 126
Query: 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136
E+I ++ M K + P + T+ ++KA + +G H+ F++ Y+
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYV 186
Query: 137 GNTLLRMYAACKEIDFAKALFDEMPE 162
GNT++ MY C+ ID A+ +FDEMPE
Sbjct: 187 GNTMIDMYVKCESIDCARKVFDEMPE 212
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ A+ ++ +A+ + E+++ FD M K+G+R D +T + A Q
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 305
Query: 124 LIFKVGLHSDKY--IGNTLLRMYAACKEIDFAKALFDEM 160
+ K G + IG+ L+ MY+ C ++ A +F M
Sbjct: 306 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
ISR + + L++ H + +L L +S + +I ++ P S + S+F V
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPAS---SLSVFRRVS 66
Query: 62 PP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119
P ++ +N++IRA++K E+++ + ++ ++ + PD T+P V+KA +G
Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
V+ I +G SD ++GN L+ MY+ + A+ +FDEMP
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMP 168
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
R +FN++ ++N++I Y ++ +E++KLF M+ + D++TY ++ S +
Sbjct: 361 ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR 420
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +HS K G+ D + N L+ MYA C E+ + +F M
Sbjct: 421 LADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM 469
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNT+I Y K ES+++F E L +PD LT V++A + + +++ +
Sbjct: 275 SYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYM 333
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
K G + + N L+ +YA C ++ A+ +F+ M
Sbjct: 334 LKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110
R +F+ MP L ++N+LI Y+ E+++++ E+ + + PD+ T V+ A
Sbjct: 160 ARQVFDE-MPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFG 218
Query: 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L++ G +H K G++S + N L+ MY + A+ +FDEM
Sbjct: 219 NLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEM 268
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 37/172 (21%)
Query: 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNN-----VMPPLFAYNTLIRAYAKTSC 79
+ ++ DH TY++ + T L L F + L +N + L N LI YAK
Sbjct: 400 MIMEEQADHITYLMLISVSTRLA-DLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGE 458
Query: 80 SIESIKLFDEM--------------------LKTGLR-----------PDNLTYPFVVKA 108
+S+K+F M TGL+ PD T+ +
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+G +H + + G S+ IGN L+ MY+ C ++ + +F+ M
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERM 570
>sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730
OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
Length = 653
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+F YN LI + +++++ + EM G+ PD T+P ++K SD L V VH
Sbjct: 126 VFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAMELSDVK-KVHG 184
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L FK+G SD Y+G+ L+ Y+ ++ A+ +FDE+P+
Sbjct: 185 LAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPD 223
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
LF +N+++ + ++ LF+ ML +G+RPD +T V+ + + G +H
Sbjct: 328 LFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHG 387
Query: 124 LIFKVGL----HSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ GL S+++I N+L+ MY C ++ A+ +FD M
Sbjct: 388 YMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSM 428
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126
+N L+ Y++ +++ +F +M + G+ T V+ A I G S+H L
Sbjct: 230 WNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAV 289
Query: 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
K G SD + N L+ MY K ++ A ++F+ M E
Sbjct: 290 KTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDE 325
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
++N +I Y SC ++ +F M + G++PD +T+ +++A
Sbjct: 435 SWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQA 477
>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2
SV=1
Length = 572
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 26 FLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESI 84
+KT LD + + +S+ + S + + + S+F +V LF +NT+IR Y+ + +
Sbjct: 51 MVKTGLDKDDFAVSKLLAFSSVLDIRYASSIFEHVSNTNLFMFNTMIRGYSISDEPERAF 110
Query: 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144
+F+++ GL D ++ +K+ + L + +G +H + + G + N L+ Y
Sbjct: 111 SVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFTDLRNALIHFY 170
Query: 145 AACKEIDFAKALFDEMPE 162
C +I A+ +FDEMP+
Sbjct: 171 CVCGKISDARKVFDEMPQ 188
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFN-NVMPP 63
I L LS H L +K LD + ++I+ I + + R +F+ +
Sbjct: 237 ISDLGDLSGAESAH----VLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKD 292
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ +N +I YAKT E + L +M ++P++ T+ ++ + VG +V
Sbjct: 293 VVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVAD 352
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
L+ + + D +G L+ MYA ++ A +F+ M +
Sbjct: 353 LLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKD 391
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 53 TRSLFNNVMPPLFA--YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY-PFVVKAS 109
R +F+ + + A ++TL+ Y + S ++ LF M K+ + + T F+ S
Sbjct: 179 ARKVFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLFRIMRKSEVVVNVSTLLSFLSAIS 238
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
D L G S H L K+GL D ++ L+ MY I A+ +FD
Sbjct: 239 DLGDLSGAE-SAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFD 286
>sp|Q9M9R6|PPR43_ARATH Pentatricopeptide repeat-containing protein At1g14470
OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2
Length = 540
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 14/164 (8%)
Query: 2 ISRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLFNN 59
I+ Q T QL++ H QL + SL +Y SR I T L ++TR +F++
Sbjct: 12 IASQALTFPQLNQI---HAQL---IVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDS 65
Query: 60 V-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
V P +F N++ + ++K + + ++L+++ + G+ PD ++P V+K++ + G
Sbjct: 66 VTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGR-----FG 120
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+L+ K+G D Y+ N ++ MY + ++ A+ +FD++ +
Sbjct: 121 ILFQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQ 164
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L R F+ MP + ++N ++ YA+ + ++++LF++ML+ G+RP+ T+ V+
Sbjct: 214 LENARKYFDR-MPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVIS 272
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + S+ LI + + + ++ LL M+A C++I A+ +F+E+
Sbjct: 273 ACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNEL 325
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 54 RSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASD 110
R LF+ MP + ++N+LI YA + +I+ F++M+ G +PD +T V+ A
Sbjct: 351 RQLFDT-MPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACG 409
Query: 111 QCLLIGVGGSVHSLIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G + I K + L+ Y +L+ MYA + AK +FDEM E
Sbjct: 410 HMADLELGDCIVDYIRKNQIKLNDSGY--RSLIFMYARGGNLWEAKRVFDEMKE 461
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
+YNTL A+A +E++ L +M G+ PD +TY V+ A ++ L+ G + I
Sbjct: 466 SYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSI 525
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 53 TRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
+ LF+ + + + ++N +I YA+T E+++LF +M+KT +RPD T VV A Q
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
I +G VH I G S+ I N L+ +Y+ C E++ A LF+ +P
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTR-----SLFNNVMP 62
+L+ KT + A +K L + Y +S+ I + +S HF S+F +
Sbjct: 38 SLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI-LSPHFEGLPYAISVFKTIQE 96
Query: 63 P-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
P L +NT+ R +A +S + ++KL+ M+ GL P++ T+PFV+K+ + G +
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
H + K+G D Y+ +L+ MY ++ A +FD+ P
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSP 196
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
+ ++NTLI Y + E++ LF EML++G P+++T ++ A I +G +H
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391
Query: 124 LIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I K G+ + + +L+ MYA C +I+ A +F+ +
Sbjct: 392 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 6 IETLIQLS---KTAHHHHQLPALFLKT-SLDHNTYIISRFILTSLPISLHFTRSLFNNVM 61
I+TLI+ K+ QL A F++T SL H + I I T+L +
Sbjct: 8 IKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKS 67
Query: 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
PP+ A+ ++IR + S +++ F EM +G PD+ +P V+K+ + + G SV
Sbjct: 68 PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127
Query: 122 HSLIFKVGLHSDKYIGNTLLRMYAA----CKEIDFAKALFDEMPE 162
H I ++G+ D Y GN L+ MYA +I +FDEMP+
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN-VFDEMPQ 171
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 46 LPISLHFTRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYP 103
+P + R +F VMP + +YNT+I YA++ +++++ EM T L+PD+ T
Sbjct: 188 MPFGIDSVRRVFE-VMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V+ + + + G +H + + G+ SD YIG++L+ MYA I+ ++ +F +
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRL 303
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV-MPPLFAYNTLIRAYAKTS 78
++ ++ +D + YI S + + + + + +F+ + ++N+L+ Y +
Sbjct: 263 EIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNG 322
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138
E+++LF +M+ ++P + + V+ A + +G +H + + G S+ +I +
Sbjct: 323 RYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIAS 382
Query: 139 TLLRMYAACKEIDFAKALFDEM 160
L+ MY+ C I A+ +FD M
Sbjct: 383 ALVDMYSKCGNIKAARKIFDRM 404
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 69.3 bits (168), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
F +N +I+ + IE+++ + M+ G++ D TYPFV+K+ + G +H++
Sbjct: 96 FLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAM 155
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ K+G SD Y+ N+L+ +Y A+ +F+EMPE
Sbjct: 156 VIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 52 FTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111
F R NV+ ++N++I AY + + +++LF E+ + L PD+ T ++ A +
Sbjct: 388 FDRMAEKNVI----SWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAE 443
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
L + G +H+ I K S+ I N+L+ MYA C +++ A+ F+ +
Sbjct: 444 SLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHI 492
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTS 78
++ A+ +K + Y+ + I + + + MP + ++N++I Y
Sbjct: 151 KIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALG 210
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS-DKYIG 137
S+ LF EMLK G +PD + + A +G +H + + + D +
Sbjct: 211 DGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVM 270
Query: 138 NTLLRMYAACKEIDFAKALFDEM 160
++L MY+ E+ +A+ +F+ M
Sbjct: 271 TSILDMYSKYGEVSYAERIFNGM 293
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 52 FTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKAS 109
+ +FN ++ + A+N +I YA+ ++ F +M + GL+PD +T ++ AS
Sbjct: 285 YAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPAS 344
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I G ++H + G + L+ MY C ++ A+ +FD M E
Sbjct: 345 ----AILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAE 393
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS 78
++ A +K+ NT I++ + + ++ L R FN+++ + ++N++I AYA
Sbjct: 452 EIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHG 511
Query: 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS-VHSLIFKVGLHSDKYIG 137
S+ LF EM+ + + P+ T+ ++ A ++ G S+ + G+
Sbjct: 512 FGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHY 571
Query: 138 NTLLRMYAACKEIDFAKALFDEMP 161
+L + AK +EMP
Sbjct: 572 GCMLDLIGRTGNFSAAKRFLEEMP 595
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNT----YIISRFILTSLPISLHFTRSLFNNVMPP 63
+LI S H Q+ AL L+TSL N+ + +SR L+ +P ++++ +F+ + P
Sbjct: 16 SLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNP 75
Query: 64 LFAY-NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIG--VGG 119
++ NT+IRA++ + E +LF + + P N L+ F +K C+ G +GG
Sbjct: 76 TLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKC---CIKSGDLLGG 132
Query: 120 -SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H IF G SD + TL+ +Y+ C+ A +FDE+P+
Sbjct: 133 LQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPK 176
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM---LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++N L Y + + + + LFD+M + ++PD +T ++A + G VH
Sbjct: 181 SWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVH 240
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + GL + NTL+ MY+ C +D A +F M E
Sbjct: 241 DFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRE 280
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+ ++ LI A E+I+ F+EMLK G+ P+ T ++ A L+ G
Sbjct: 283 VVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEG 337
>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490
OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
Length = 681
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHF-TRSLFNN--VMPPLFAYNTLIRAYAKT 77
Q+ A + + +++++ ++ + + +LH +S+ N ++ PL +N LI +YAK
Sbjct: 64 QVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPL-PWNVLIASYAKN 122
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E I + M+ G+RPD TYP V+KA + L + G VH I S Y+
Sbjct: 123 ELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVC 182
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N L+ MY + + A+ LFD M E
Sbjct: 183 NALISMYKRFRNMGIARRLFDRMFE 207
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N++I YA+ + S E+ L EML G +P+++T ++ + + G H
Sbjct: 346 LCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHC 405
Query: 124 LIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I + D + N+L+ +YA +I AK + D M +
Sbjct: 406 YILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSK 445
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 36/150 (24%)
Query: 49 SLHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
++ R LF+ + ++N +I YA E+ +LFD+M +G+ +T+ +
Sbjct: 194 NMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISG 253
Query: 108 ASDQ--------------------------------CLLIG---VGGSVHSLIFKVGLHS 132
Q C LIG +G +H L
Sbjct: 254 GCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDG 313
Query: 133 DKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ NTL+ MY+ CK++ A +F + E
Sbjct: 314 IDNVRNTLITMYSKCKDLRHALIVFRQTEE 343
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDE-MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122
++A+N +I Y + S E I+ F ML +GL PD T+P V+KA C + G +H
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKA---CRTVIDGNKIH 173
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
L K G D Y+ +L+ +Y+ K + A+ LFDEMP
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMP 212
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKAS 109
R++FN +P + ++NT+I YA+ + E+I++++ M + G + + T+ V+ A
Sbjct: 403 ARAVFN-WLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPAC 461
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
Q + G +H + K GL+ D ++ +L MY C ++ A +LF ++P
Sbjct: 462 SQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 514
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N++I+AY + +I LF EM + ++PD LT + Q I SV
Sbjct: 313 LISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQG 372
Query: 124 LIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ G D IGN ++ MYA +D A+A+F+ +P
Sbjct: 373 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMP 62
R ++++ +T +++ L LK + Y+ + I L S ++ R LF+ MP
Sbjct: 154 RTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDE-MP 212
Query: 63 --PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGG 119
+ ++N +I Y ++ + E++ L GLR D++T ++ A + G
Sbjct: 213 VRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGV 267
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
++HS K GL S+ ++ N L+ +YA + + +FD M
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
+NTLI + +++ LF EML G++PD++T+ ++ A L+ G
Sbjct: 520 WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 571
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 40/186 (21%)
Query: 15 TAHHHHQLPALFLKTSLDHNTYIISRFI--LTSLPISLHFTRSLF---NNVMPPLFAYNT 69
T Q+ A +KT L +T SR + + P +++ +F N+ P F +NT
Sbjct: 37 TMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNP--FVWNT 94
Query: 70 LIRAYAKTSCSIESIKLFDEMLKTG--LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
+IR ++++S +I +F +ML + ++P LTYP V KA + G +H ++ K
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIK 154
Query: 128 VGLHSDKYIGNTLLRMY-------------------------------AACKEIDFAKAL 156
GL D +I NT+L MY A C ID A+ L
Sbjct: 155 EGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNL 214
Query: 157 FDEMPE 162
FDEMP+
Sbjct: 215 FDEMPQ 220
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L +N++I A ++ LF E+ ++GL PD++++ V+ A G VH
Sbjct: 324 LSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAH------SGEVHR 377
Query: 124 LIFKVGLHSDKYIGNTLLRMY-------AACKEIDFAKALFDEMP 161
L +KY+ ++ Y ++ A+AL MP
Sbjct: 378 ADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMP 422
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127
N +IR+Y E +K+F M +RPD+ T+P V+KA I +G +H K
Sbjct: 109 NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK 168
Query: 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
VGL S ++GN L+ MY C + A+ + DEM
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123
L ++N +I Y K + +E+++L+ M G PD ++ V+ A + +G +H
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
I + L + + N L+ MYA C ++ A+ +F+ M
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM 370
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+VHS I L + +G L+R YA+ K++ A+ +FDE+PE
Sbjct: 60 TVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPE 102
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L R +F N+ + ++ +I AY + +++ LF ++ +GL PD++ + + A
Sbjct: 360 LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAA 419
Query: 109 SDQCLLIGVGGSVHSLI 125
L+ G S L+
Sbjct: 420 CSHAGLLEEGRSCFKLM 436
>sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620
OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
Length = 836
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 52 FTRSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKAS 109
+R +F++V P + +N++IR Y + E++ F M + G+ PD ++ F +KA
Sbjct: 51 LSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKAC 110
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G +H LI ++GL SD YIG L+ MY +++ A+ +FD+M
Sbjct: 111 AGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKM 161
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 53/95 (55%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++N ++ Y + E++ F +M +P+ +T+ +V+A+ + + VG SVHS +
Sbjct: 571 SWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSL 630
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ G S +GN+L+ MYA C I+ ++ F E+
Sbjct: 631 IQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEI 665
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
L LF N+ + +++ +I +Y + E+I LF +M++ ++P+ +T V++
Sbjct: 351 LEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQG 410
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+G S+H K + S+ ++ MYA C A F+ +P
Sbjct: 411 CAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLP 463
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
A+N L + Y + + ++ ++ M G+ PD+ T +++ C G V+ I
Sbjct: 469 AFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQI 528
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159
K G S+ ++ + L+ M+ C + A LFD+
Sbjct: 529 IKHGFDSECHVAHALINMFTKCDALAAAIVLFDK 562
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125
++ T++ AYA E ++LFD M +R + + ++A+ + G ++H
Sbjct: 267 SWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYA 326
Query: 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157
+ GL D + +L+ MY+ C E++ A+ LF
Sbjct: 327 VQQGLIGDVSVATSLMSMYSKCGELEIAEQLF 358
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 54 RSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112
R +F+ + + + +NT++ A+ CS ++ LF +M + D+++ ++ A +
Sbjct: 155 RQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKL 214
Query: 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
V +H L+ K G + L+ MY C ++ A+++F+E+
Sbjct: 215 EKSDVCRCLHGLVIKKGFIF--AFSSGLIDMYCNCADLYAAESVFEEV 260
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121
+ ++NT++ AYA + ++ LF M + L+PD++++ V+ A L+ G +
Sbjct: 670 IVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRI 727
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--L 64
+ +++ K H H + L +TY+ + + S + R +F+ MP +
Sbjct: 121 SALRIGKGVHCHAVVSGFGL------DTYVQAALVTFYSKCGDMEGARQVFDR-MPEKSI 173
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
A+N+L+ + + + E+I++F +M ++G PD+ T+ ++ A Q + +G VH
Sbjct: 174 VAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQY 233
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
I GL + +G L+ +Y+ C ++ A+ +FD+M E
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKE 271
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNV- 60
S E +++ Q+ A + T + ++++ I L ++ +T LF +V
Sbjct: 9 SAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVP 68
Query: 61 MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK--ASDQCLLIGVG 118
+P F +N++I++ +K + + + ML + + P N T+ V+K A L IG G
Sbjct: 69 LPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKG 128
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
H+++ GL D Y+ L+ Y+ C +++ A+ +FD MPE
Sbjct: 129 VHCHAVVSGFGL--DTYVQAALVTFYSKCGDMEGARQVFDRMPE 170
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 50 LHFTRSLFNNVMP-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108
+H R++F V L +NTLI YA+ S ++I F M G PD +T ++ A
Sbjct: 224 VHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSA 283
Query: 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
Q + VG VHSLI G+ ++++ N L+ MYA C +++ A ++F+ +
Sbjct: 284 CAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESI 335
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL--IGVGGSVH 122
F + LI+ + I+++ L+ + + G+ P +++A C++ + +G +H
Sbjct: 12 FHVSNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWV-PLILRAC-ACVVPRVVLGKLLH 69
Query: 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
S K G+ SD +G++L+ MY C + A+ +FDEMPE
Sbjct: 70 SESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPE 109
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 37 IISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR 96
++ R +L L LH + S+ V + ++LI Y K C + + K+FDEM + +
Sbjct: 58 VVPRVVLGKL---LH-SESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVA 113
Query: 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156
N + D L G L ++ + + +++ Y EI+ A+ L
Sbjct: 114 TWNAMIGGYMSNGDAVLASG-------LFEEISVCRNTVTWIEMIKGYGKRIEIEKAREL 166
Query: 157 FDEMP 161
F+ MP
Sbjct: 167 FERMP 171
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 24 ALFLKTSLDHNTYIISRFILTSLPIS-LHFTRSLFNNVMPP-LFAYNTLIRAYAKTSCSI 81
A +KTSL+ + ++++FI L S + P +F YN L + + S I
Sbjct: 49 AAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPI 108
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
S++L+ ML+ + P + TY +VKAS G H F G H I TL+
Sbjct: 109 RSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVK--IQTTLI 166
Query: 142 RMYAACKEIDFAKALFDEMPE 162
Y+A I A+ +FDEMPE
Sbjct: 167 DFYSATGRIREARKVFDEMPE 187
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 49 SLHFTRSLFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
+L SLFN + + + ++ T+I+ Y++ E+I +F +M++ G+ PD +T V+
Sbjct: 236 NLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVIS 295
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
A ++ +G VH + G D YIG+ L+ MY+ C ++ A +F +P+
Sbjct: 296 ACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK 350
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 21 QLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYN-----TLIRAYA 75
+L L+ S+ ++Y S + S + F SL ++ F ++ TLI Y+
Sbjct: 112 ELYVRMLRDSVSPSSYTYSSLVKAS-SFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYS 170
Query: 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135
T E+ K+FDEM + D++ + +V A + L + S +SL ++ ++
Sbjct: 171 ATGRIREARKVFDEMPER----DDIAWTTMVSAYRRVLDMD---SANSLANQMS-EKNEA 222
Query: 136 IGNTLLRMYAACKEIDFAKALFDEMP 161
N L+ Y ++ A++LF++MP
Sbjct: 223 TSNCLINGYMGLGNLEQAESLFNQMP 248
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 56 LFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115
FN LF +N++I A + E++K+F +M ++P+ +T+ V A L+
Sbjct: 345 FFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLV 404
Query: 116 GVGGSVH 122
G ++
Sbjct: 405 DEGRRIY 411
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133
+A+ S++ +M+ LRPD+ P K+ +G SVH L K G +D
Sbjct: 91 FAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDAD 150
Query: 134 KYIGNTLLRMYAACKEIDFAKALFDEMPE 162
++G++L+ MYA C EI +A+ +FDEMP+
Sbjct: 151 VFVGSSLVDMYAKCGEIVYARKMFDEMPQ 179
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 25 LFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSI 81
L +KT D + ++ S + + + + + R +F+ MP + ++ ++ YA+ +
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDE-MPQRNVVTWSGMMYGYAQMGENE 199
Query: 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141
E++ LF E L L ++ ++ V+ L+ +G +H L K S ++G++L+
Sbjct: 200 EALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLV 259
Query: 142 RMYAACKEIDFAKALFDEMP 161
+Y+ C + A +F+E+P
Sbjct: 260 SLYSKCGVPEGAYQVFNEVP 279
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 56 LFNNV-MPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114
+FN V + L +N +++AYA+ S + + I+LF M +G++P+ +T+ V+ A L
Sbjct: 274 VFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGL 333
Query: 115 IGVG 118
+ G
Sbjct: 334 VDEG 337
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 38 ISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95
+SR + T +LFN + +F++N++I A++ S E++ F M K L
Sbjct: 13 VSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSL 72
Query: 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155
P ++P +KA I G H F G SD ++ + L+ MY+ C +++ A+
Sbjct: 73 YPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK 132
Query: 156 LFDEMPE 162
+FDE+P+
Sbjct: 133 VFDEIPK 139
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 54 RSLFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQ 111
R +F+ ++ +YN+++ YA++ S E+ ++F ++K + N +T V+ A
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
+ +G +H + ++GL D +G +++ MY C ++ A+ FD M
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM 348
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 64 LFAYNTLIRAYAKTSCSIESIKLFDEML------KTGLRPDNLTYPFVVKASDQCLLIGV 117
+ ++ ++IR Y +++++ LF ++L + D++ V+ A + G+
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE--IDFAKALFDEM 160
S+HS + K G +GNTLL YA E + A+ +FD++
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI 246
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 50 LHFTRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107
L+ + LF +MP + ++ TLI +++T +I + EML+ GL+P+ T V+
Sbjct: 243 LNRAKQLFE-LMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLS 301
Query: 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160
A + +G G +H I G+ D+ IG L+ MYA C E+D A +F M
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM 354
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 44 TSLPISLHFTRSLFNNVMPPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+SL S ++ S+F N F N LIR + + S++ F ML+ G++PD LT+
Sbjct: 70 SSLLKSPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTF 129
Query: 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
PFV+K++ + +G ++H+ K + D ++ +L+ MYA ++ A +F+E P+
Sbjct: 130 PFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPD 189
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 27 LKTSLDHNTYIISRF-ILTSLPISLHFTRSLFNN--VMPPLFAYNTLIRAYAKTSCSIES 83
L+ +++ N I ++F ++++ + + + R LF+ F N++I+AY +T +S
Sbjct: 2 LRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDS 61
Query: 84 IKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142
L+ ++ K T PDN T+ + K+ + + G +HS I++ G +D Y+ ++
Sbjct: 62 FALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVD 121
Query: 143 MYAACKEIDFAKALFDEMP 161
MYA ++ A+ FDEMP
Sbjct: 122 MYAKFGKMGCARNAFDEMP 140
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 53 TRSLFNNVMPP--LFAYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKAS 109
R LF+ MP L ++NT+I Y + E I+LF EM T L PD++T V+ A
Sbjct: 226 ARKLFD-AMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAI 284
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+ +G H + + L + +L MY+ C EI+ AK +FDEMPE
Sbjct: 285 SDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPE 337
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 22 LPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKTSC 79
LPA +L+T L I L R + + MP + ++ +I Y++T
Sbjct: 84 LPATYLRTRL---------LIFYGKCDCLEDARKVLDE-MPEKNVVSWTAMISRYSQTGH 133
Query: 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139
S E++ +F EM+++ +P+ T+ V+ + + +G+G +H LI K S ++G++
Sbjct: 134 SSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSS 193
Query: 140 LLRMYAACKEIDFAKALFDEMPE 162
LL MYA +I A+ +F+ +PE
Sbjct: 194 LLDMYAKAGQIKEAREIFECLPE 216
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 21 QLPALFLKTSLDHNTYIISRFI-LTSLPISLHFTRSLFNNVMPP--LFAYNTLIRAYAKT 77
Q+ L +K + D + ++ S + + + + R +F +P + + +I YA+
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFE-CLPERDVVSCTAIIAGYAQL 232
Query: 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137
E++++F + G+ P+ +TY ++ A L+ G H + + L +
Sbjct: 233 GLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ 292
Query: 138 NTLLRMYAACKEIDFAKALFDEMPE 162
N+L+ MY+ C + +A+ LFD MPE
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPE 317
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
G VH+ + K Y+ LL Y C ++ A+ + DEMPE
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPE 115
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 50 LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109
LH RS+ ++ F+YNTL+ +YA +I + + G PD T+P V KA
Sbjct: 62 LHSIRSVLSS-----FSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKAC 116
Query: 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161
+ I G +H ++ K+G + D Y+ N+L+ Y C E A +F EMP
Sbjct: 117 GKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMP 168
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 66 AYNTLIRAYAKTSCSIESIKLFDEM-LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124
++N++I S E+I LF M +G++PD V+ A + G VH
Sbjct: 272 SWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEY 331
Query: 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158
I G+ D +IG ++ MYA C I+ A +F+
Sbjct: 332 ILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFN 365
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 61 MP--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118
MP + ++ +I + +T E++ F +M + P+ TY V+ +S + + +G
Sbjct: 167 MPVRDVVSWTGIITGFTRTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLG 223
Query: 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162
+H LI K GN L+ MY C+++ A +F E+ +
Sbjct: 224 KGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEK 267
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 56 LFNNVMPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102
+FN + +F +N L+ A +ES++ F+EM+K G +P+ +T+
Sbjct: 363 IFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTF 410
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,720,996
Number of Sequences: 539616
Number of extensions: 2017926
Number of successful extensions: 9049
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6540
Number of HSP's gapped (non-prelim): 2127
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)