Query 045917
Match_columns 162
No_of_seqs 132 out of 1140
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 06:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 6E-32 1.3E-36 212.6 13.4 158 4-161 329-489 (697)
2 PLN03081 pentatricopeptide (PP 100.0 1.1E-31 2.5E-36 211.1 14.5 143 20-162 244-388 (697)
3 PLN03218 maturation of RBCL 1; 100.0 2.1E-31 4.5E-36 214.3 14.6 152 9-160 446-605 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.6E-31 5.7E-36 213.7 14.6 157 4-160 583-745 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 5.5E-31 1.2E-35 211.1 15.9 158 5-162 293-452 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.9E-31 1.5E-35 210.6 16.4 146 17-162 204-351 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 1E-17 2.3E-22 88.7 5.0 50 62-111 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.6 9.9E-16 2.1E-20 81.0 4.3 50 97-146 1-50 (50)
9 PF12854 PPR_1: PPR repeat 99.4 2.6E-13 5.7E-18 65.5 3.3 34 128-161 1-34 (34)
10 PRK11788 tetratricopeptide rep 99.3 8.6E-11 1.9E-15 87.2 13.8 151 7-159 148-307 (389)
11 PRK11788 tetratricopeptide rep 99.3 2.1E-10 4.6E-15 85.1 13.5 150 9-160 116-275 (389)
12 KOG4422 Uncharacterized conser 99.2 2E-10 4.3E-15 84.1 10.2 123 26-152 198-330 (625)
13 KOG4422 Uncharacterized conser 99.2 1.4E-09 3.1E-14 79.7 14.0 153 5-157 212-379 (625)
14 TIGR02917 PEP_TPR_lipo putativ 99.1 3.5E-09 7.7E-14 85.3 15.1 152 7-162 743-899 (899)
15 TIGR02917 PEP_TPR_lipo putativ 99.1 1.1E-08 2.3E-13 82.6 15.0 146 11-160 646-796 (899)
16 PF12854 PPR_1: PPR repeat 99.0 2.7E-10 5.8E-15 54.9 3.2 29 62-90 5-33 (34)
17 TIGR00756 PPR pentatricopeptid 99.0 8.9E-10 1.9E-14 53.3 4.1 35 65-99 1-35 (35)
18 PF13812 PPR_3: Pentatricopept 98.9 3.1E-09 6.8E-14 51.1 4.1 33 65-97 2-34 (34)
19 TIGR02521 type_IV_pilW type IV 98.8 4.7E-07 1E-11 61.8 15.0 150 9-160 40-195 (234)
20 PF13429 TPR_15: Tetratricopep 98.8 6.6E-08 1.4E-12 68.9 9.9 151 7-159 117-273 (280)
21 PF01535 PPR: PPR repeat; Int 98.7 1.4E-08 3E-13 47.6 3.3 31 65-95 1-31 (31)
22 TIGR02521 type_IV_pilW type IV 98.7 1.2E-06 2.6E-11 59.7 14.1 151 7-160 72-229 (234)
23 TIGR00756 PPR pentatricopeptid 98.6 4.4E-08 9.6E-13 47.1 3.1 35 100-134 1-35 (35)
24 KOG4318 Bicoid mRNA stability 98.6 2.1E-07 4.5E-12 73.7 7.3 140 21-162 11-232 (1088)
25 PRK15174 Vi polysaccharide exp 98.5 5.1E-06 1.1E-10 66.1 14.4 47 13-60 123-170 (656)
26 PF08579 RPM2: Mitochondrial r 98.5 1.3E-06 2.8E-11 53.1 8.3 82 66-147 27-117 (120)
27 PRK15174 Vi polysaccharide exp 98.5 4.5E-06 9.8E-11 66.4 13.9 89 66-158 286-376 (656)
28 PF13429 TPR_15: Tetratricopep 98.5 2.5E-07 5.4E-12 66.0 6.3 123 34-159 109-239 (280)
29 PF13812 PPR_3: Pentatricopept 98.5 1.4E-07 3.1E-12 45.1 3.2 33 100-132 2-34 (34)
30 TIGR00990 3a0801s09 mitochondr 98.5 1.2E-05 2.7E-10 63.5 15.0 142 14-159 345-492 (615)
31 PF10037 MRP-S27: Mitochondria 98.5 3.4E-06 7.4E-11 63.1 11.1 118 30-147 61-186 (429)
32 PF01535 PPR: PPR repeat; Int 98.5 8.7E-08 1.9E-12 44.8 1.8 28 135-162 1-28 (31)
33 PRK12370 invasion protein regu 98.5 9.7E-06 2.1E-10 63.3 14.0 142 16-160 320-467 (553)
34 PRK09782 bacteriophage N4 rece 98.5 1.3E-05 2.7E-10 66.2 15.0 147 9-159 551-702 (987)
35 TIGR00990 3a0801s09 mitochondr 98.5 7.6E-06 1.6E-10 64.7 13.2 145 14-160 308-459 (615)
36 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.2E-05 2.7E-10 59.8 12.0 122 37-161 171-295 (395)
37 PRK12370 invasion protein regu 98.3 2.7E-05 5.9E-10 60.8 13.6 147 7-159 345-498 (553)
38 PRK10049 pgaA outer membrane p 98.3 5.2E-05 1.1E-09 61.5 15.3 152 5-160 20-176 (765)
39 PRK09782 bacteriophage N4 rece 98.3 4.8E-05 1E-09 62.9 14.1 144 11-159 520-668 (987)
40 PRK10049 pgaA outer membrane p 98.2 7.9E-05 1.7E-09 60.5 14.4 147 11-159 248-418 (765)
41 PRK11447 cellulose synthase su 98.2 5.7E-05 1.2E-09 63.9 13.8 145 8-159 581-736 (1157)
42 PRK15179 Vi polysaccharide bio 98.2 0.00014 2.9E-09 58.2 14.7 149 8-159 57-213 (694)
43 PRK10747 putative protoheme IX 98.2 0.0002 4.4E-09 53.8 14.9 116 38-159 266-386 (398)
44 PF04733 Coatomer_E: Coatomer 98.2 7.2E-06 1.6E-10 58.9 6.5 120 38-159 134-261 (290)
45 PRK14574 hmsH outer membrane p 98.2 0.00023 5E-09 58.0 15.4 152 7-159 299-475 (822)
46 KOG4318 Bicoid mRNA stability 98.1 1.4E-05 3.1E-10 63.7 8.3 89 62-153 202-290 (1088)
47 PRK10747 putative protoheme IX 98.1 9.4E-05 2E-09 55.6 12.2 27 133-159 262-288 (398)
48 PF10037 MRP-S27: Mitochondria 98.1 1.8E-05 3.9E-10 59.4 8.2 98 15-112 81-186 (429)
49 PF06239 ECSIT: Evolutionarily 98.1 2.7E-05 5.8E-10 52.9 8.0 97 53-149 33-153 (228)
50 PRK11447 cellulose synthase su 98.1 0.00018 3.9E-09 60.9 14.3 148 10-159 471-662 (1157)
51 TIGR00540 hemY_coli hemY prote 98.1 0.0008 1.7E-08 50.8 15.8 124 34-159 262-395 (409)
52 PF04733 Coatomer_E: Coatomer 98.0 5.5E-05 1.2E-09 54.4 9.1 111 44-159 111-226 (290)
53 PRK14574 hmsH outer membrane p 98.0 0.00033 7.1E-09 57.1 13.3 143 13-160 47-195 (822)
54 COG5010 TadD Flp pilus assembl 98.0 0.00065 1.4E-08 47.3 12.6 122 35-158 100-226 (257)
55 cd05804 StaR_like StaR_like; a 98.0 0.00076 1.7E-08 49.6 14.1 148 11-160 54-212 (355)
56 PF08579 RPM2: Mitochondrial r 97.9 8.9E-05 1.9E-09 45.2 7.1 65 47-111 38-116 (120)
57 KOG4626 O-linked N-acetylgluco 97.9 0.00024 5.1E-09 55.4 10.9 149 5-158 325-480 (966)
58 TIGR00540 hemY_coli hemY prote 97.9 0.00046 1E-08 52.0 12.6 145 14-159 132-288 (409)
59 PRK15359 type III secretion sy 97.9 0.00031 6.7E-09 45.2 10.0 96 33-129 22-122 (144)
60 PF05843 Suf: Suppressor of fo 97.9 0.00027 5.8E-09 50.6 10.2 136 4-142 5-148 (280)
61 KOG1840 Kinesin light chain [C 97.8 0.00054 1.2E-08 52.8 11.0 153 7-159 290-475 (508)
62 PRK11189 lipoprotein NlpI; Pro 97.8 0.0037 7.9E-08 45.2 14.4 80 12-92 76-160 (296)
63 TIGR03302 OM_YfiO outer membra 97.7 0.003 6.4E-08 43.8 13.4 147 12-160 45-229 (235)
64 PF06239 ECSIT: Evolutionarily 97.7 0.00028 6E-09 48.1 7.7 98 32-129 44-169 (228)
65 PF09976 TPR_21: Tetratricopep 97.7 0.0007 1.5E-08 43.6 9.4 121 37-159 14-143 (145)
66 TIGR02552 LcrH_SycD type III s 97.7 0.00061 1.3E-08 43.0 8.9 96 38-136 20-120 (135)
67 COG5010 TadD Flp pilus assembl 97.7 0.0028 6.1E-08 44.2 12.2 111 47-159 79-193 (257)
68 PRK15359 type III secretion sy 97.7 0.0017 3.7E-08 41.8 10.7 104 54-159 13-117 (144)
69 COG3071 HemY Uncharacterized e 97.7 0.0076 1.6E-07 44.5 14.7 58 100-159 329-386 (400)
70 cd00189 TPR Tetratricopeptide 97.7 0.00049 1.1E-08 39.4 7.5 91 67-159 3-93 (100)
71 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00077 1.7E-08 50.4 9.8 117 4-126 173-295 (395)
72 PRK10370 formate-dependent nit 97.6 0.0015 3.2E-08 44.4 10.4 95 63-160 72-170 (198)
73 KOG1155 Anaphase-promoting com 97.6 0.00095 2.1E-08 50.2 9.7 146 11-158 273-456 (559)
74 KOG1840 Kinesin light chain [C 97.6 0.0025 5.4E-08 49.2 12.1 155 6-160 205-393 (508)
75 COG2956 Predicted N-acetylgluc 97.6 0.0036 7.8E-08 45.3 11.8 156 5-160 74-275 (389)
76 COG4783 Putative Zn-dependent 97.6 0.0022 4.9E-08 48.4 10.9 122 35-159 307-433 (484)
77 PF12895 Apc3: Anaphase-promot 97.5 0.0001 2.2E-09 42.9 3.2 81 77-159 2-83 (84)
78 KOG4626 O-linked N-acetylgluco 97.5 0.0016 3.4E-08 51.0 10.1 118 39-159 290-413 (966)
79 PF04840 Vps16_C: Vps16, C-ter 97.5 0.0019 4.1E-08 47.1 10.0 106 38-159 180-287 (319)
80 KOG1126 DNA-binding cell divis 97.5 0.00034 7.4E-09 54.3 6.3 122 33-159 419-548 (638)
81 PRK11189 lipoprotein NlpI; Pro 97.5 0.0035 7.5E-08 45.3 11.3 120 36-159 65-190 (296)
82 TIGR02552 LcrH_SycD type III s 97.5 0.0034 7.3E-08 39.5 9.7 94 64-159 17-110 (135)
83 PF05843 Suf: Suppressor of fo 97.5 0.00098 2.1E-08 47.8 7.9 122 36-160 2-133 (280)
84 KOG1070 rRNA processing protei 97.4 0.0058 1.3E-07 51.8 12.1 120 38-160 1533-1660(1710)
85 PF12921 ATP13: Mitochondrial 97.3 0.0024 5.1E-08 40.2 7.6 47 96-142 49-96 (126)
86 KOG3081 Vesicle coat complex C 97.3 0.005 1.1E-07 43.3 9.6 131 22-158 95-231 (299)
87 PRK10370 formate-dependent nit 97.3 0.016 3.4E-07 39.4 12.1 104 32-137 70-181 (198)
88 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0056 1.2E-07 37.3 9.2 90 39-128 6-105 (119)
89 cd05804 StaR_like StaR_like; a 97.3 0.015 3.3E-07 42.7 12.6 144 13-160 19-174 (355)
90 PRK15179 Vi polysaccharide bio 97.3 0.019 4.1E-07 46.3 13.8 133 5-141 91-229 (694)
91 COG3071 HemY Uncharacterized e 97.3 0.006 1.3E-07 45.0 9.9 126 3-133 266-395 (400)
92 KOG2047 mRNA splicing factor [ 97.3 0.011 2.4E-07 46.6 11.7 152 7-159 109-273 (835)
93 PF12921 ATP13: Mitochondrial 97.2 0.0064 1.4E-07 38.2 8.4 82 35-116 2-105 (126)
94 COG2956 Predicted N-acetylgluc 97.2 0.029 6.3E-07 40.8 12.3 141 15-158 50-204 (389)
95 cd00189 TPR Tetratricopeptide 97.2 0.0043 9.4E-08 35.3 7.2 87 40-127 5-96 (100)
96 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.018 3.8E-07 35.1 10.1 89 69-159 7-101 (119)
97 KOG1126 DNA-binding cell divis 97.1 0.0026 5.6E-08 49.6 7.3 137 16-159 335-514 (638)
98 TIGR03302 OM_YfiO outer membra 97.1 0.033 7.2E-07 38.5 12.4 122 34-159 32-191 (235)
99 KOG1915 Cell cycle control pro 97.1 0.017 3.7E-07 44.1 10.9 139 15-158 88-231 (677)
100 KOG3941 Intermediate in Toll s 97.1 0.0046 1E-07 44.1 7.6 102 49-150 49-174 (406)
101 KOG1129 TPR repeat-containing 97.1 0.014 3.1E-07 42.5 10.0 141 14-158 237-382 (478)
102 KOG3081 Vesicle coat complex C 97.0 0.012 2.6E-07 41.5 9.1 93 47-141 150-248 (299)
103 KOG1914 mRNA cleavage and poly 97.0 0.023 5E-07 43.9 11.1 122 5-126 371-499 (656)
104 KOG2003 TPR repeat-containing 97.0 0.0065 1.4E-07 46.0 8.1 143 14-160 504-686 (840)
105 KOG2003 TPR repeat-containing 96.9 0.055 1.2E-06 41.3 12.4 117 31-150 588-710 (840)
106 PF14559 TPR_19: Tetratricopep 96.9 0.0037 8.1E-08 34.4 5.0 52 76-128 3-54 (68)
107 PF03704 BTAD: Bacterial trans 96.9 0.0032 7E-08 40.4 5.1 59 66-125 64-122 (146)
108 KOG1129 TPR repeat-containing 96.8 0.0051 1.1E-07 44.7 6.3 119 39-160 227-350 (478)
109 CHL00033 ycf3 photosystem I as 96.8 0.027 5.8E-07 37.0 9.5 92 65-157 36-136 (168)
110 CHL00033 ycf3 photosystem I as 96.8 0.03 6.6E-07 36.8 9.6 90 34-124 34-138 (168)
111 PF12569 NARP1: NMDA receptor- 96.8 0.047 1E-06 42.6 11.8 131 22-158 133-286 (517)
112 KOG1070 rRNA processing protei 96.8 0.099 2.1E-06 44.9 13.9 151 3-156 1533-1693(1710)
113 PLN03088 SGT1, suppressor of 96.7 0.016 3.4E-07 43.1 8.4 82 47-129 15-100 (356)
114 PF12895 Apc3: Anaphase-promot 96.7 0.0087 1.9E-07 34.6 5.5 73 48-123 3-82 (84)
115 COG4783 Putative Zn-dependent 96.7 0.052 1.1E-06 41.4 10.6 109 14-124 320-433 (484)
116 PRK02603 photosystem I assembl 96.6 0.042 9.2E-07 36.3 9.4 45 47-91 48-99 (172)
117 KOG3060 Uncharacterized conser 96.6 0.1 2.2E-06 36.8 11.2 143 15-160 27-180 (289)
118 KOG2076 RNA polymerase III tra 96.6 0.051 1.1E-06 44.2 11.0 111 47-160 152-267 (895)
119 COG3063 PilF Tfp pilus assembl 96.6 0.13 2.9E-06 35.7 13.9 111 47-158 82-197 (250)
120 PF12569 NARP1: NMDA receptor- 96.5 0.14 3E-06 40.1 12.7 126 33-159 190-330 (517)
121 KOG3616 Selective LIM binding 96.5 0.028 6.1E-07 45.3 8.9 126 15-157 747-873 (1636)
122 KOG1155 Anaphase-promoting com 96.5 0.1 2.3E-06 39.8 11.4 142 14-159 344-491 (559)
123 PF12688 TPR_5: Tetratrico pep 96.4 0.076 1.6E-06 33.1 8.7 22 70-91 44-65 (120)
124 PF13170 DUF4003: Protein of u 96.4 0.052 1.1E-06 39.3 9.0 140 3-145 60-227 (297)
125 PRK14720 transcript cleavage f 96.4 0.11 2.3E-06 43.2 11.6 60 66-127 118-177 (906)
126 KOG0547 Translocase of outer m 96.4 0.076 1.7E-06 40.8 9.9 141 13-159 339-487 (606)
127 KOG3060 Uncharacterized conser 96.3 0.23 5E-06 35.1 12.5 117 9-128 61-183 (289)
128 PF13432 TPR_16: Tetratricopep 96.3 0.011 2.4E-07 32.2 4.2 54 73-127 6-59 (65)
129 PF09976 TPR_21: Tetratricopep 96.3 0.056 1.2E-06 34.6 8.1 109 13-124 24-143 (145)
130 KOG4340 Uncharacterized conser 96.3 0.052 1.1E-06 39.2 8.3 145 14-160 158-336 (459)
131 KOG2002 TPR-containing nuclear 96.3 0.022 4.9E-07 46.6 7.2 107 50-157 628-739 (1018)
132 PLN03088 SGT1, suppressor of 96.3 0.083 1.8E-06 39.3 9.9 95 12-109 14-113 (356)
133 PF14559 TPR_19: Tetratricopep 96.2 0.025 5.4E-07 31.0 5.5 47 14-61 5-52 (68)
134 KOG0985 Vesicle coat protein c 96.2 0.2 4.4E-06 42.0 12.1 102 47-157 1088-1189(1666)
135 PF13414 TPR_11: TPR repeat; P 96.2 0.016 3.6E-07 31.9 4.7 59 100-159 4-63 (69)
136 KOG1914 mRNA cleavage and poly 96.2 0.18 4E-06 39.2 11.1 135 22-160 353-498 (656)
137 KOG1915 Cell cycle control pro 96.1 0.22 4.7E-06 38.4 11.3 142 11-157 118-267 (677)
138 KOG1173 Anaphase-promoting com 96.1 0.21 4.5E-06 39.0 11.2 112 47-159 393-514 (611)
139 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.15 3.3E-06 38.9 10.2 137 6-145 403-546 (660)
140 KOG1125 TPR repeat-containing 96.1 0.29 6.3E-06 38.2 11.9 139 18-158 412-566 (579)
141 PRK15363 pathogenicity island 96.0 0.07 1.5E-06 34.8 7.5 81 47-128 48-132 (157)
142 PRK10803 tol-pal system protei 96.0 0.13 2.9E-06 36.6 9.4 93 65-159 144-242 (263)
143 KOG0547 Translocase of outer m 96.0 0.1 2.2E-06 40.1 9.0 111 47-159 441-562 (606)
144 PF03704 BTAD: Bacterial trans 96.0 0.028 6.1E-07 36.0 5.6 57 103-160 66-122 (146)
145 PF13424 TPR_12: Tetratricopep 95.9 0.018 4E-07 32.5 4.2 59 101-159 7-71 (78)
146 KOG2002 TPR-containing nuclear 95.9 0.14 3E-06 42.3 10.1 96 62-159 268-367 (1018)
147 PRK15363 pathogenicity island 95.9 0.093 2E-06 34.2 7.6 83 74-159 45-128 (157)
148 KOG0495 HAT repeat protein [RN 95.9 0.6 1.3E-05 37.5 12.9 140 16-159 532-676 (913)
149 KOG1128 Uncharacterized conser 95.9 0.096 2.1E-06 41.9 8.8 127 31-160 453-613 (777)
150 KOG2053 Mitochondrial inherita 95.8 0.22 4.7E-06 40.9 10.8 126 14-145 23-155 (932)
151 PRK10153 DNA-binding transcrip 95.8 0.38 8.3E-06 37.7 11.8 129 29-159 331-478 (517)
152 KOG2076 RNA polymerase III tra 95.8 0.41 9E-06 39.3 12.0 97 63-160 413-509 (895)
153 PF13432 TPR_16: Tetratricopep 95.7 0.021 4.6E-07 31.0 3.7 51 108-159 6-56 (65)
154 PF13762 MNE1: Mitochondrial s 95.7 0.13 2.9E-06 33.1 7.6 89 24-112 26-128 (145)
155 PF13929 mRNA_stabil: mRNA sta 95.7 0.31 6.7E-06 35.0 10.0 120 38-159 134-263 (292)
156 COG3063 PilF Tfp pilus assembl 95.6 0.46 1E-05 33.1 13.7 147 6-155 75-228 (250)
157 COG5107 RNA14 Pre-mRNA 3'-end 95.6 0.15 3.4E-06 38.9 8.6 92 64-158 397-490 (660)
158 PRK02603 photosystem I assembl 95.6 0.38 8.2E-06 31.7 10.5 85 64-149 35-121 (172)
159 PF13371 TPR_9: Tetratricopept 95.5 0.036 7.9E-07 30.8 4.3 57 72-129 3-59 (73)
160 PF07079 DUF1347: Protein of u 95.5 0.26 5.6E-06 37.7 9.5 139 9-148 15-181 (549)
161 KOG1174 Anaphase-promoting com 95.5 0.77 1.7E-05 34.9 13.6 150 6-156 200-390 (564)
162 PRK14720 transcript cleavage f 95.5 0.27 5.8E-06 41.0 10.4 124 29-159 24-174 (906)
163 KOG4340 Uncharacterized conser 95.2 0.44 9.6E-06 34.7 9.5 114 47-161 125-268 (459)
164 KOG0495 HAT repeat protein [RN 95.1 1 2.2E-05 36.3 11.8 142 14-157 598-776 (913)
165 KOG3785 Uncharacterized conser 95.0 0.5 1.1E-05 35.2 9.6 116 23-146 382-513 (557)
166 PRK04841 transcriptional regul 95.0 0.94 2E-05 37.8 12.6 148 12-159 464-637 (903)
167 KOG3941 Intermediate in Toll s 95.0 0.26 5.6E-06 35.5 7.9 93 23-128 95-188 (406)
168 KOG4570 Uncharacterized conser 95.0 0.15 3.3E-06 37.1 6.7 96 29-128 58-164 (418)
169 PRK10803 tol-pal system protei 94.9 0.42 9.2E-06 34.1 8.9 93 36-128 144-246 (263)
170 KOG1173 Anaphase-promoting com 94.9 0.6 1.3E-05 36.6 10.0 128 14-145 394-533 (611)
171 KOG2280 Vacuolar assembly/sort 94.8 0.38 8.2E-06 38.9 9.1 113 29-156 678-792 (829)
172 PF12688 TPR_5: Tetratrico pep 94.8 0.54 1.2E-05 29.3 8.8 87 6-92 7-103 (120)
173 KOG2047 mRNA splicing factor [ 94.8 0.9 1.9E-05 36.4 10.9 143 7-154 555-714 (835)
174 PF13371 TPR_9: Tetratricopept 94.7 0.19 4.1E-06 27.8 5.7 46 47-92 8-57 (73)
175 KOG3785 Uncharacterized conser 94.6 0.091 2E-06 38.9 4.9 137 19-160 342-487 (557)
176 KOG2376 Signal recognition par 94.6 1.7 3.7E-05 34.5 11.7 138 14-159 26-200 (652)
177 PF13414 TPR_11: TPR repeat; P 94.6 0.14 3E-06 28.0 4.8 64 64-128 3-67 (69)
178 PF10602 RPN7: 26S proteasome 94.5 0.47 1E-05 31.7 7.8 63 65-127 37-101 (177)
179 PF00637 Clathrin: Region in C 94.4 0.017 3.7E-07 36.9 0.9 127 7-150 14-141 (143)
180 PF10300 DUF3808: Protein of u 94.2 0.31 6.7E-06 37.8 7.4 152 9-161 197-374 (468)
181 PF13424 TPR_12: Tetratricopep 94.1 0.16 3.4E-06 28.6 4.5 61 66-126 7-73 (78)
182 KOG3616 Selective LIM binding 94.1 0.18 3.9E-06 41.0 6.0 101 47-158 745-848 (1636)
183 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 0.65 1.4E-05 35.6 8.7 59 35-93 75-141 (453)
184 COG3629 DnrI DNA-binding trans 94.1 0.49 1.1E-05 34.0 7.6 74 35-108 153-236 (280)
185 PF13929 mRNA_stabil: mRNA sta 94.1 1.6 3.5E-05 31.5 11.6 108 15-122 143-261 (292)
186 KOG1128 Uncharacterized conser 93.9 0.61 1.3E-05 37.6 8.5 146 3-159 401-578 (777)
187 PF04840 Vps16_C: Vps16, C-ter 93.8 2 4.3E-05 31.6 11.8 80 32-122 205-285 (319)
188 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.93 2E-05 34.8 8.9 65 62-128 73-141 (453)
189 PF14938 SNAP: Soluble NSF att 93.5 0.79 1.7E-05 32.9 8.1 151 9-160 44-222 (282)
190 cd00923 Cyt_c_Oxidase_Va Cytoc 93.4 0.65 1.4E-05 27.7 6.0 60 82-142 25-84 (103)
191 PF04053 Coatomer_WDAD: Coatom 93.4 2.6 5.7E-05 32.5 10.9 95 48-158 332-426 (443)
192 KOG2796 Uncharacterized conser 93.1 2.4 5.2E-05 30.5 10.2 130 7-139 184-324 (366)
193 KOG0553 TPR repeat-containing 93.1 0.93 2E-05 32.8 7.5 83 74-159 91-174 (304)
194 PRK10153 DNA-binding transcrip 93.1 1.6 3.5E-05 34.4 9.6 66 62-129 418-483 (517)
195 PF13176 TPR_7: Tetratricopept 92.9 0.17 3.7E-06 24.0 2.7 24 136-159 1-24 (36)
196 KOG2796 Uncharacterized conser 92.9 0.89 1.9E-05 32.6 7.1 95 67-161 180-279 (366)
197 PF02284 COX5A: Cytochrome c o 92.8 0.52 1.1E-05 28.4 5.1 57 85-142 31-87 (108)
198 smart00299 CLH Clathrin heavy 92.6 1.7 3.6E-05 27.5 11.2 124 5-146 12-137 (140)
199 KOG1127 TPR repeat-containing 92.5 1.6 3.4E-05 36.9 9.0 122 36-160 493-622 (1238)
200 PRK15331 chaperone protein Sic 92.0 2.5 5.3E-05 28.0 9.4 90 38-128 41-134 (165)
201 PRK04841 transcriptional regul 91.9 6.9 0.00015 32.9 13.1 148 12-159 421-598 (903)
202 PF09613 HrpB1_HrpK: Bacterial 91.9 2.5 5.4E-05 27.8 10.2 111 36-154 8-129 (160)
203 smart00299 CLH Clathrin heavy 91.7 2.2 4.8E-05 26.9 8.0 106 38-159 10-121 (140)
204 PRK15331 chaperone protein Sic 91.7 1.4 3E-05 29.1 6.6 82 75-159 48-130 (165)
205 PF09205 DUF1955: Domain of un 91.6 1.6 3.4E-05 27.9 6.4 83 47-130 69-151 (161)
206 KOG1174 Anaphase-promoting com 91.5 3.5 7.5E-05 31.6 9.2 110 47-158 347-495 (564)
207 PF07035 Mic1: Colon cancer-as 91.4 3 6.4E-05 27.7 10.4 41 21-61 15-56 (167)
208 PF00637 Clathrin: Region in C 91.3 0.12 2.7E-06 32.9 1.5 25 64-88 42-66 (143)
209 PLN02789 farnesyltranstransfer 91.3 4.7 0.0001 29.7 11.1 138 7-147 44-189 (320)
210 PF07721 TPR_4: Tetratricopept 91.1 0.51 1.1E-05 20.5 3.0 23 137-159 4-26 (26)
211 PF13374 TPR_10: Tetratricopep 90.6 0.43 9.3E-06 22.9 2.9 25 135-159 3-27 (42)
212 PF13176 TPR_7: Tetratricopept 90.6 0.76 1.6E-05 21.7 3.6 23 67-89 2-24 (36)
213 KOG1156 N-terminal acetyltrans 90.1 8.8 0.00019 31.0 11.5 93 62-157 367-462 (700)
214 PF10300 DUF3808: Protein of u 90.1 5.7 0.00012 31.0 9.7 125 35-161 188-332 (468)
215 KOG0985 Vesicle coat protein c 90.0 12 0.00026 32.4 12.4 84 35-121 1104-1188(1666)
216 KOG3617 WD40 and TPR repeat-co 90.0 5.8 0.00013 33.3 9.7 26 132-157 965-990 (1416)
217 PF13428 TPR_14: Tetratricopep 90.0 0.53 1.1E-05 23.3 2.9 26 135-160 2-27 (44)
218 PRK10866 outer membrane biogen 89.8 5.3 0.00012 28.1 10.4 49 109-157 185-235 (243)
219 KOG0553 TPR repeat-containing 89.8 2.4 5.2E-05 30.7 6.9 92 15-109 96-192 (304)
220 KOG2053 Mitochondrial inherita 89.8 3.3 7.3E-05 34.4 8.4 102 47-152 22-128 (932)
221 COG3629 DnrI DNA-binding trans 89.8 0.74 1.6E-05 33.1 4.4 77 66-143 155-236 (280)
222 COG1729 Uncharacterized protei 89.7 5.5 0.00012 28.5 8.5 92 66-160 144-241 (262)
223 PF04184 ST7: ST7 protein; In 89.7 5.1 0.00011 31.4 8.8 51 75-125 270-321 (539)
224 KOG1156 N-terminal acetyltrans 89.6 6.7 0.00014 31.7 9.6 128 32-160 366-508 (700)
225 KOG2376 Signal recognition par 89.6 9.3 0.0002 30.6 11.0 118 37-156 378-513 (652)
226 KOG4555 TPR repeat-containing 89.5 4 8.6E-05 26.2 7.7 84 47-130 56-146 (175)
227 PF10366 Vps39_1: Vacuolar sor 89.4 2.8 6E-05 25.6 6.2 40 49-92 28-67 (108)
228 PF11663 Toxin_YhaV: Toxin wit 89.4 0.61 1.3E-05 29.6 3.3 32 76-109 107-138 (140)
229 TIGR02561 HrpB1_HrpK type III 89.4 4.3 9.4E-05 26.4 8.2 71 37-112 9-89 (153)
230 COG1729 Uncharacterized protei 89.2 6.4 0.00014 28.1 8.6 92 37-128 144-244 (262)
231 COG4235 Cytochrome c biogenesi 89.0 7 0.00015 28.3 8.8 97 63-161 155-254 (287)
232 KOG3617 WD40 and TPR repeat-co 88.8 6.4 0.00014 33.1 9.2 94 33-128 724-829 (1416)
233 PLN02789 farnesyltranstransfer 88.7 7.9 0.00017 28.6 11.7 118 41-160 43-168 (320)
234 PF13374 TPR_10: Tetratricopep 88.2 1.5 3.2E-05 20.9 3.8 27 65-91 3-29 (42)
235 PF13281 DUF4071: Domain of un 88.0 9.7 0.00021 28.8 11.8 126 3-128 182-334 (374)
236 PF14938 SNAP: Soluble NSF att 87.7 8.4 0.00018 27.7 10.0 126 36-161 115-264 (282)
237 PF09205 DUF1955: Domain of un 87.5 5.6 0.00012 25.5 7.1 57 102-159 89-145 (161)
238 KOG4570 Uncharacterized conser 87.5 1.9 4.1E-05 31.7 5.2 96 62-159 62-160 (418)
239 TIGR02508 type_III_yscG type I 87.4 4.7 0.0001 24.4 7.1 82 15-102 20-105 (115)
240 PF13428 TPR_14: Tetratricopep 86.9 1.8 3.9E-05 21.3 3.6 26 67-92 4-29 (44)
241 KOG1125 TPR repeat-containing 86.5 5.3 0.00011 31.6 7.3 105 49-157 409-521 (579)
242 COG4700 Uncharacterized protei 86.2 8.6 0.00019 26.3 12.0 123 29-155 83-214 (251)
243 PF13170 DUF4003: Protein of u 86.1 6.2 0.00013 28.8 7.3 112 16-127 119-249 (297)
244 KOG0550 Molecular chaperone (D 85.8 14 0.0003 28.4 9.4 120 36-158 202-345 (486)
245 PF11846 DUF3366: Domain of un 85.7 3.6 7.8E-05 27.7 5.7 29 131-159 141-169 (193)
246 PF13762 MNE1: Mitochondrial s 85.7 7.5 0.00016 25.1 8.0 84 64-147 39-128 (145)
247 KOG0548 Molecular co-chaperone 85.7 6 0.00013 31.1 7.2 95 47-144 15-114 (539)
248 PF09477 Type_III_YscG: Bacter 85.2 6.6 0.00014 24.1 7.0 75 15-94 21-99 (116)
249 COG3898 Uncharacterized membra 84.6 16 0.00035 28.0 10.0 117 38-159 85-213 (531)
250 PF13431 TPR_17: Tetratricopep 84.4 1.3 2.9E-05 20.7 2.3 24 132-155 11-34 (34)
251 PF11848 DUF3368: Domain of un 84.3 3 6.6E-05 21.3 3.7 31 76-106 14-44 (48)
252 KOG4162 Predicted calmodulin-b 84.2 23 0.00049 29.4 11.5 118 38-158 653-778 (799)
253 KOG4648 Uncharacterized conser 84.0 4.6 0.0001 30.2 5.8 73 72-154 105-178 (536)
254 COG3118 Thioredoxin domain-con 83.7 15 0.00032 26.9 10.4 136 14-153 148-291 (304)
255 KOG0548 Molecular co-chaperone 83.4 7.7 0.00017 30.5 7.0 51 73-124 367-417 (539)
256 KOG4077 Cytochrome c oxidase, 83.4 7.1 0.00015 24.8 5.6 59 83-142 68-126 (149)
257 PF13934 ELYS: Nuclear pore co 82.9 13 0.00029 25.9 9.1 107 28-145 72-183 (226)
258 KOG0543 FKBP-type peptidyl-pro 82.7 19 0.00041 27.4 8.6 111 47-160 221-352 (397)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 4.7 0.0001 24.2 4.4 46 115-160 23-68 (103)
260 KOG4162 Predicted calmodulin-b 82.4 27 0.00059 29.0 10.7 131 16-158 243-381 (799)
261 PF04053 Coatomer_WDAD: Coatom 82.1 11 0.00025 29.1 7.6 83 32-124 344-427 (443)
262 PF02284 COX5A: Cytochrome c o 81.6 1.7 3.7E-05 26.3 2.4 44 117-160 28-71 (108)
263 COG4700 Uncharacterized protei 81.2 15 0.00032 25.2 13.7 115 6-122 95-216 (251)
264 KOG2610 Uncharacterized conser 80.9 22 0.00047 26.8 9.6 145 13-159 116-272 (491)
265 PF13181 TPR_8: Tetratricopept 80.7 3.2 7E-05 18.8 2.9 24 136-159 3-26 (34)
266 PRK10564 maltose regulon perip 80.1 2.9 6.2E-05 30.4 3.5 41 62-102 254-295 (303)
267 PF13525 YfiO: Outer membrane 79.9 16 0.00035 24.8 8.7 55 102-160 113-167 (203)
268 KOG2114 Vacuolar assembly/sort 79.8 36 0.00078 28.7 10.2 75 77-158 381-455 (933)
269 KOG2114 Vacuolar assembly/sort 79.5 23 0.0005 29.7 8.6 19 143-161 499-517 (933)
270 PF11207 DUF2989: Protein of u 79.5 15 0.00031 25.3 6.5 82 71-154 114-198 (203)
271 KOG0276 Vesicle coat complex C 79.5 32 0.0007 28.0 11.1 97 47-159 650-746 (794)
272 PF10366 Vps39_1: Vacuolar sor 79.2 7.4 0.00016 23.7 4.7 27 101-127 41-67 (108)
273 PF11207 DUF2989: Protein of u 78.8 15 0.00032 25.2 6.4 70 49-118 121-197 (203)
274 KOG1127 TPR repeat-containing 78.0 35 0.00075 29.5 9.3 23 34-56 525-548 (1238)
275 PF11846 DUF3366: Domain of un 77.6 16 0.00034 24.6 6.5 52 76-127 120-172 (193)
276 PF10602 RPN7: 26S proteasome 77.2 8.9 0.00019 25.6 5.1 60 100-159 37-98 (177)
277 TIGR03504 FimV_Cterm FimV C-te 77.0 4.5 9.8E-05 20.3 2.8 20 107-126 7-26 (44)
278 PF09868 DUF2095: Uncharacteri 77.0 2.6 5.7E-05 25.9 2.2 26 5-30 66-91 (128)
279 PF08311 Mad3_BUB1_I: Mad3/BUB 77.0 15 0.00034 23.0 7.4 41 117-157 81-122 (126)
280 PF14689 SPOB_a: Sensor_kinase 76.8 6.9 0.00015 21.2 3.7 25 67-91 26-50 (62)
281 KOG4555 TPR repeat-containing 76.8 17 0.00037 23.4 8.2 120 37-158 9-139 (175)
282 PF07719 TPR_2: Tetratricopept 76.7 4.9 0.00011 18.0 2.9 24 136-159 3-26 (34)
283 PF13512 TPR_18: Tetratricopep 76.6 18 0.00038 23.4 6.3 79 35-113 11-96 (142)
284 COG3118 Thioredoxin domain-con 76.2 28 0.0006 25.5 11.7 109 47-157 147-259 (304)
285 PF14669 Asp_Glu_race_2: Putat 75.7 11 0.00025 25.8 5.1 57 103-159 136-206 (233)
286 COG4649 Uncharacterized protei 74.9 23 0.0005 24.0 9.5 126 35-160 59-193 (221)
287 COG0735 Fur Fe2+/Zn2+ uptake r 74.8 20 0.00043 23.1 6.3 61 88-149 10-70 (145)
288 PF12926 MOZART2: Mitotic-spin 73.9 12 0.00026 21.9 4.3 41 21-61 29-70 (88)
289 KOG0991 Replication factor C, 73.6 21 0.00046 25.5 6.2 85 22-110 181-283 (333)
290 KOG1538 Uncharacterized conser 73.1 15 0.00033 30.1 6.0 58 39-96 777-849 (1081)
291 COG4003 Uncharacterized protei 72.0 4.6 9.9E-05 23.3 2.3 30 4-33 35-65 (98)
292 KOG1585 Protein required for f 70.9 36 0.00078 24.5 7.6 49 108-157 199-250 (308)
293 KOG4567 GTPase-activating prot 70.8 33 0.00072 25.4 6.8 73 82-159 261-343 (370)
294 COG4235 Cytochrome c biogenesi 69.8 40 0.00088 24.6 9.5 96 32-129 153-257 (287)
295 PF13174 TPR_6: Tetratricopept 69.6 3.2 7E-05 18.4 1.2 21 140-160 6-26 (33)
296 cd07153 Fur_like Ferric uptake 68.9 14 0.00029 22.5 4.2 47 70-116 6-52 (116)
297 PF00515 TPR_1: Tetratricopept 68.7 9.8 0.00021 17.1 3.8 27 66-92 3-29 (34)
298 PF09613 HrpB1_HrpK: Bacterial 68.2 32 0.00069 22.7 8.5 97 14-116 24-126 (160)
299 PF04184 ST7: ST7 protein; In 68.0 39 0.00085 26.8 7.1 67 24-91 248-322 (539)
300 KOG0403 Neoplastic transformat 67.7 58 0.0013 25.6 7.8 72 38-113 512-588 (645)
301 COG4105 ComL DNA uptake lipopr 67.5 43 0.00092 24.0 9.8 129 32-161 32-194 (254)
302 KOG4077 Cytochrome c oxidase, 67.3 9.1 0.0002 24.3 3.1 45 117-161 67-111 (149)
303 TIGR02561 HrpB1_HrpK type III 66.9 22 0.00048 23.2 4.8 51 75-129 21-74 (153)
304 PHA02940 hypothetical protein; 66.7 44 0.00096 23.8 9.0 23 68-90 146-168 (315)
305 PF01475 FUR: Ferric uptake re 66.6 13 0.00029 22.8 3.8 48 3-50 10-58 (120)
306 COG3947 Response regulator con 66.4 37 0.0008 25.1 6.3 55 66-121 281-335 (361)
307 PF13281 DUF4071: Domain of un 66.2 56 0.0012 24.9 10.0 71 40-110 146-228 (374)
308 PF07035 Mic1: Colon cancer-as 65.9 37 0.00079 22.6 9.5 87 62-159 27-114 (167)
309 PF13512 TPR_18: Tetratricopep 65.8 33 0.00072 22.1 10.4 21 40-60 52-73 (142)
310 PRK11639 zinc uptake transcrip 65.2 37 0.00081 22.5 6.6 35 26-61 17-52 (169)
311 COG0735 Fur Fe2+/Zn2+ uptake r 64.7 35 0.00076 22.0 6.2 38 23-61 9-47 (145)
312 COG4455 ImpE Protein of avirul 64.7 21 0.00045 25.2 4.6 79 66-145 3-83 (273)
313 KOG2280 Vacuolar assembly/sort 64.7 33 0.00071 28.5 6.3 85 66-160 686-770 (829)
314 KOG1920 IkappaB kinase complex 64.5 1E+02 0.0022 27.3 10.3 20 138-157 1030-1049(1265)
315 PRK10564 maltose regulon perip 64.4 13 0.00028 27.2 3.8 46 94-139 251-297 (303)
316 KOG1538 Uncharacterized conser 64.3 83 0.0018 26.2 9.5 36 23-61 623-659 (1081)
317 PF12926 MOZART2: Mitotic-spin 64.0 25 0.00055 20.6 4.2 39 120-158 29-67 (88)
318 cd07153 Fur_like Ferric uptake 63.6 19 0.00042 21.8 4.1 49 3-51 3-52 (116)
319 smart00028 TPR Tetratricopepti 62.8 11 0.00023 15.5 2.3 24 136-159 3-26 (34)
320 PF13525 YfiO: Outer membrane 62.8 45 0.00098 22.6 10.4 140 12-155 17-199 (203)
321 COG2178 Predicted RNA-binding 62.0 21 0.00046 24.4 4.2 63 47-110 42-118 (204)
322 COG4455 ImpE Protein of avirul 61.8 54 0.0012 23.2 7.3 62 47-108 14-81 (273)
323 PF10579 Rapsyn_N: Rapsyn N-te 61.7 23 0.00051 20.3 3.8 18 137-154 46-63 (80)
324 PF09454 Vps23_core: Vps23 cor 61.5 22 0.00048 19.5 3.6 49 97-146 6-54 (65)
325 smart00777 Mad3_BUB1_I Mad3/BU 61.4 24 0.00052 22.2 4.2 43 116-158 80-123 (125)
326 PF01475 FUR: Ferric uptake re 60.8 25 0.00055 21.5 4.3 44 70-113 13-56 (120)
327 PF08311 Mad3_BUB1_I: Mad3/BUB 60.5 39 0.00085 21.1 6.9 73 50-124 49-124 (126)
328 KOG3807 Predicted membrane pro 60.1 55 0.0012 24.7 6.4 12 49-60 231-242 (556)
329 KOG0543 FKBP-type peptidyl-pro 59.8 36 0.00077 26.0 5.5 88 73-161 217-318 (397)
330 KOG4334 Uncharacterized conser 59.2 12 0.00026 29.3 3.0 94 48-147 461-573 (650)
331 COG1747 Uncharacterized N-term 58.8 95 0.0021 25.0 10.4 63 31-94 62-128 (711)
332 COG3947 Response regulator con 58.8 17 0.00036 26.7 3.5 139 17-159 150-338 (361)
333 PF02607 B12-binding_2: B12 bi 58.5 16 0.00035 20.4 3.0 41 75-115 12-52 (79)
334 KOG2041 WD40 repeat protein [G 56.2 1.2E+02 0.0027 25.5 8.4 112 11-122 745-875 (1189)
335 PF07575 Nucleopor_Nup85: Nup8 55.9 19 0.00042 28.8 3.9 60 34-93 404-467 (566)
336 KOG1166 Mitotic checkpoint ser 55.3 82 0.0018 27.4 7.4 75 74-148 88-163 (974)
337 cd00280 TRFH Telomeric Repeat 54.6 61 0.0013 22.1 5.4 62 50-114 85-158 (200)
338 KOG4567 GTPase-activating prot 54.2 81 0.0018 23.5 6.3 56 20-75 263-319 (370)
339 KOG2610 Uncharacterized conser 54.0 65 0.0014 24.4 5.9 48 77-125 116-163 (491)
340 COG1747 Uncharacterized N-term 53.7 1.2E+02 0.0026 24.5 7.6 111 38-158 45-155 (711)
341 PF09868 DUF2095: Uncharacteri 52.8 47 0.001 20.6 4.3 41 103-144 65-105 (128)
342 PF08631 SPO22: Meiosis protei 52.2 86 0.0019 22.5 9.9 130 12-144 5-165 (278)
343 KOG2908 26S proteasome regulat 51.5 1E+02 0.0022 23.3 8.5 55 47-101 88-157 (380)
344 PF11768 DUF3312: Protein of u 51.4 29 0.00063 27.6 4.1 24 67-90 411-434 (545)
345 PRK11639 zinc uptake transcrip 51.4 69 0.0015 21.2 6.5 66 53-118 13-79 (169)
346 PF07163 Pex26: Pex26 protein; 51.1 96 0.0021 22.8 7.2 53 70-122 124-181 (309)
347 TIGR03581 EF_0839 conserved hy 51.0 16 0.00034 25.4 2.3 84 79-162 136-236 (236)
348 PF11838 ERAP1_C: ERAP1-like C 50.4 95 0.0021 22.5 11.5 141 15-158 145-303 (324)
349 COG3898 Uncharacterized membra 50.2 1.2E+02 0.0026 23.6 11.1 29 65-93 189-217 (531)
350 PF04034 DUF367: Domain of unk 49.5 66 0.0014 20.4 5.9 55 36-90 67-125 (127)
351 PF11817 Foie-gras_1: Foie gra 49.1 40 0.00086 23.8 4.2 55 104-158 183-242 (247)
352 KOG1147 Glutamyl-tRNA syntheta 49.0 16 0.00036 29.1 2.4 16 146-161 315-330 (712)
353 PF12862 Apc5: Anaphase-promot 49.0 53 0.0011 19.1 4.4 68 75-142 9-85 (94)
354 PF04097 Nic96: Nup93/Nic96; 48.8 60 0.0013 26.5 5.6 86 5-92 263-355 (613)
355 PRK02287 hypothetical protein; 48.6 80 0.0017 21.1 6.0 56 36-91 108-167 (171)
356 KOG1130 Predicted G-alpha GTPa 48.6 44 0.00096 26.0 4.5 121 38-158 198-339 (639)
357 PF14669 Asp_Glu_race_2: Putat 48.5 33 0.00071 23.6 3.4 55 69-123 137-205 (233)
358 COG2405 Predicted nucleic acid 48.0 45 0.00098 21.6 3.8 34 110-143 120-153 (157)
359 PRK09462 fur ferric uptake reg 47.4 74 0.0016 20.4 6.1 47 69-115 21-68 (148)
360 COG0457 NrfG FOG: TPR repeat [ 47.0 75 0.0016 20.4 12.9 123 35-159 95-227 (291)
361 PF02847 MA3: MA3 domain; Int 46.6 29 0.00062 20.9 2.9 23 39-61 6-29 (113)
362 PF12796 Ank_2: Ankyrin repeat 46.5 53 0.0011 18.4 4.2 15 85-99 40-54 (89)
363 KOG2422 Uncharacterized conser 46.4 1.3E+02 0.0029 24.5 6.9 71 7-77 349-428 (665)
364 PF07163 Pex26: Pex26 protein; 46.4 1.2E+02 0.0025 22.4 8.2 87 69-157 88-181 (309)
365 COG5108 RPO41 Mitochondrial DN 46.1 1.8E+02 0.0039 24.5 7.8 73 39-112 32-116 (1117)
366 COG4649 Uncharacterized protei 45.1 98 0.0021 21.1 8.9 128 5-132 61-200 (221)
367 smart00804 TAP_C C-terminal do 44.9 34 0.00073 18.7 2.6 23 76-98 37-60 (63)
368 PF07079 DUF1347: Protein of u 44.7 33 0.00071 26.9 3.3 76 37-112 79-180 (549)
369 PRK15180 Vi polysaccharide bio 44.7 60 0.0013 25.9 4.7 110 14-127 303-419 (831)
370 smart00777 Mad3_BUB1_I Mad3/BU 44.5 79 0.0017 19.9 5.8 72 50-123 49-123 (125)
371 PF13934 ELYS: Nuclear pore co 44.2 1.1E+02 0.0024 21.4 9.1 71 39-113 112-186 (226)
372 PF04124 Dor1: Dor1-like famil 43.9 44 0.00094 24.9 3.9 27 66-92 108-134 (338)
373 cd04445 DEP_PLEK1 DEP (Disheve 43.5 69 0.0015 19.2 3.9 58 73-130 5-65 (99)
374 PF04762 IKI3: IKI3 family; I 43.2 2E+02 0.0043 25.0 8.0 91 64-158 812-925 (928)
375 PF10475 DUF2450: Protein of u 42.8 1.3E+02 0.0028 21.9 8.7 101 48-154 112-217 (291)
376 COG4105 ComL DNA uptake lipopr 42.7 1.3E+02 0.0027 21.7 12.1 141 14-156 48-226 (254)
377 KOG1130 Predicted G-alpha GTPa 42.4 14 0.00031 28.5 1.2 51 74-124 27-80 (639)
378 PF00531 Death: Death domain; 42.3 53 0.0011 18.3 3.4 22 99-120 57-78 (83)
379 PF11817 Foie-gras_1: Foie gra 42.3 83 0.0018 22.2 5.0 54 69-122 183-241 (247)
380 PRK09462 fur ferric uptake reg 42.2 64 0.0014 20.7 4.1 37 24-61 6-44 (148)
381 PRK14958 DNA polymerase III su 42.0 1.8E+02 0.0039 23.2 8.1 73 24-98 189-279 (509)
382 PHA02875 ankyrin repeat protei 41.5 1.3E+02 0.0027 22.8 6.2 19 140-158 171-189 (413)
383 KOG0037 Ca2+-binding protein, 41.5 1.2E+02 0.0026 21.2 6.0 28 120-147 145-172 (221)
384 PRK10866 outer membrane biogen 41.2 1.3E+02 0.0027 21.3 12.2 73 37-109 35-114 (243)
385 smart00386 HAT HAT (Half-A-TPR 40.9 34 0.00073 14.6 3.2 27 114-141 2-28 (33)
386 PRK15180 Vi polysaccharide bio 40.8 1.5E+02 0.0033 23.7 6.4 80 76-158 301-381 (831)
387 PLN03025 replication factor C 40.7 1.5E+02 0.0031 21.8 7.4 75 24-100 169-260 (319)
388 PF05944 Phage_term_smal: Phag 40.4 97 0.0021 19.7 4.7 30 101-130 50-79 (132)
389 cd00280 TRFH Telomeric Repeat 40.4 1.2E+02 0.0026 20.8 5.5 61 16-76 85-155 (200)
390 PF07575 Nucleopor_Nup85: Nup8 40.0 1.7E+02 0.0036 23.7 6.8 93 63-159 371-463 (566)
391 smart00638 LPD_N Lipoprotein N 39.5 2E+02 0.0043 23.1 10.3 65 33-97 308-373 (574)
392 PF14853 Fis1_TPR_C: Fis1 C-te 39.0 60 0.0013 16.9 3.0 20 73-92 10-29 (53)
393 PRK07914 hypothetical protein; 39.0 1.6E+02 0.0034 21.7 6.5 78 22-100 137-231 (320)
394 COG5210 GTPase-activating prot 37.2 63 0.0014 25.5 4.1 40 120-159 363-402 (496)
395 PRK14956 DNA polymerase III su 37.0 2.2E+02 0.0047 22.7 8.1 74 26-100 193-284 (484)
396 KOG2223 Uncharacterized conser 36.8 64 0.0014 25.2 3.8 39 120-158 460-498 (586)
397 cd08819 CARD_MDA5_2 Caspase ac 36.5 92 0.002 18.3 5.9 62 19-81 21-83 (88)
398 COG5210 GTPase-activating prot 36.5 1.1E+02 0.0024 24.2 5.3 53 85-137 363-415 (496)
399 COG0819 TenA Putative transcri 36.3 1.5E+02 0.0032 20.7 8.6 91 62-152 107-208 (218)
400 PF08542 Rep_fac_C: Replicatio 36.1 85 0.0018 17.8 4.1 20 78-97 18-37 (89)
401 PF03745 DUF309: Domain of unk 36.1 74 0.0016 17.1 3.3 15 77-91 12-26 (62)
402 cd04400 RhoGAP_fBEM3 RhoGAP_fB 35.3 1.4E+02 0.003 20.1 5.9 57 56-112 88-147 (190)
403 PRK14951 DNA polymerase III su 35.2 2.6E+02 0.0056 23.1 9.0 72 25-98 195-284 (618)
404 KOG2041 WD40 repeat protein [G 34.7 2.8E+02 0.006 23.6 7.1 61 32-94 689-764 (1189)
405 PF14744 WASH-7_mid: WASH comp 34.6 1.4E+02 0.0031 22.5 5.2 49 79-129 281-329 (350)
406 PRK08691 DNA polymerase III su 33.9 2.9E+02 0.0063 23.3 8.1 72 25-98 190-279 (709)
407 smart00544 MA3 Domain in DAP-5 33.9 1.1E+02 0.0023 18.3 6.7 23 39-61 6-29 (113)
408 smart00164 TBC Domain in Tre-2 33.9 86 0.0019 20.9 3.9 41 120-160 152-193 (199)
409 COG2231 Uncharacterized protei 33.7 1.2E+02 0.0025 21.2 4.3 58 19-76 128-192 (215)
410 COG5108 RPO41 Mitochondrial DN 33.6 2.5E+02 0.0053 23.7 6.6 49 69-117 33-83 (1117)
411 KOG1941 Acetylcholine receptor 33.5 2.3E+02 0.0049 22.0 6.4 118 41-158 128-270 (518)
412 KOG3154 Uncharacterized conser 33.5 1.5E+02 0.0033 20.9 4.8 74 19-92 126-208 (263)
413 COG5159 RPN6 26S proteasome re 33.4 2E+02 0.0044 21.4 5.8 50 71-120 10-66 (421)
414 KOG0686 COP9 signalosome, subu 33.3 2.4E+02 0.0051 22.1 6.5 56 6-61 156-214 (466)
415 PF11123 DNA_Packaging_2: DNA 33.3 97 0.0021 17.6 3.5 25 52-76 15-43 (82)
416 KOG0624 dsRNA-activated protei 33.0 2.3E+02 0.0049 21.8 12.2 120 8-128 114-252 (504)
417 PF08631 SPO22: Meiosis protei 32.9 1.9E+02 0.004 20.8 13.5 142 16-158 103-270 (278)
418 PHA03100 ankyrin repeat protei 32.3 2.4E+02 0.0051 21.8 7.3 132 20-158 48-197 (480)
419 COG2405 Predicted nucleic acid 32.1 82 0.0018 20.4 3.2 44 64-108 110-153 (157)
420 PHA02875 ankyrin repeat protei 31.9 1.4E+02 0.003 22.6 5.1 102 47-158 12-123 (413)
421 TIGR03184 DNA_S_dndE DNA sulfu 31.6 92 0.002 19.0 3.3 35 78-112 61-97 (105)
422 PF09670 Cas_Cas02710: CRISPR- 31.2 1.7E+02 0.0036 22.4 5.3 52 76-128 143-198 (379)
423 PF01347 Vitellogenin_N: Lipop 31.2 2.9E+02 0.0062 22.4 8.1 60 36-95 347-409 (618)
424 cd08315 Death_TRAILR_DR4_DR5 D 31.0 1.2E+02 0.0026 18.0 5.5 48 80-129 47-94 (96)
425 COG2909 MalT ATP-dependent tra 30.9 3.5E+02 0.0077 23.4 9.6 80 14-93 429-526 (894)
426 KOG2063 Vacuolar assembly/sort 30.0 3.7E+02 0.008 23.4 8.3 27 66-92 506-532 (877)
427 PF11491 DUF3213: Protein of u 29.9 29 0.00062 20.1 0.8 24 92-115 17-40 (88)
428 COG3294 HD supefamily hydrolas 29.6 53 0.0012 23.2 2.2 21 81-101 67-87 (269)
429 cd02679 MIT_spastin MIT: domai 29.5 1.2E+02 0.0025 17.4 3.5 45 77-128 21-68 (79)
430 KOG3364 Membrane protein invol 29.4 1.5E+02 0.0033 19.2 4.1 51 78-128 49-100 (149)
431 PRK14700 recombination factor 29.3 2.4E+02 0.0052 20.9 6.8 61 70-130 129-197 (300)
432 COG2042 Uncharacterized conser 29.2 1.8E+02 0.0039 19.5 5.7 57 36-92 116-176 (179)
433 PRK05629 hypothetical protein; 28.7 2.4E+02 0.0051 20.7 6.8 77 22-99 135-228 (318)
434 PRK14962 DNA polymerase III su 28.4 3E+02 0.0065 21.8 11.2 103 27-131 190-316 (472)
435 PF04762 IKI3: IKI3 family; I 28.2 4.1E+02 0.0088 23.3 8.6 119 41-161 700-841 (928)
436 PF07443 HARP: HepA-related pr 27.8 34 0.00074 18.1 0.9 32 79-110 7-38 (55)
437 COG2812 DnaX DNA polymerase II 27.8 3.3E+02 0.0071 22.0 7.1 93 6-100 163-281 (515)
438 KOG1586 Protein required for f 27.5 2.4E+02 0.0052 20.4 6.9 14 146-159 166-179 (288)
439 PF14840 DNA_pol3_delt_C: Proc 27.5 32 0.00069 21.6 0.9 26 77-102 10-35 (125)
440 PF07875 Coat_F: Coat F domain 27.5 97 0.0021 16.6 2.7 17 17-33 45-61 (64)
441 PRK07452 DNA polymerase III su 27.3 2.5E+02 0.0054 20.5 7.1 76 22-99 139-234 (326)
442 TIGR01529 argR_whole arginine 27.3 1.6E+02 0.0035 19.0 4.1 43 4-46 4-46 (146)
443 PF01335 DED: Death effector d 27.3 1.3E+02 0.0028 17.1 3.8 42 115-157 36-77 (84)
444 KOG4414 COP9 signalosome, subu 27.0 81 0.0018 20.6 2.6 30 132-161 37-66 (197)
445 PF08870 DUF1832: Domain of un 26.9 1.4E+02 0.0031 18.4 3.6 87 17-113 6-96 (113)
446 PF09090 MIF4G_like_2: MIF4G l 26.7 2.4E+02 0.0052 20.1 6.1 95 4-98 15-126 (253)
447 COG1466 HolA DNA polymerase II 26.6 2.7E+02 0.0059 20.7 5.8 76 22-98 149-242 (334)
448 KOG2063 Vacuolar assembly/sort 26.6 4.3E+02 0.0093 23.0 10.6 110 38-147 507-639 (877)
449 KOG0686 COP9 signalosome, subu 26.4 3.2E+02 0.0069 21.4 6.0 62 64-126 150-214 (466)
450 PRK09857 putative transposase; 26.4 2.6E+02 0.0057 20.4 5.7 25 103-127 210-234 (292)
451 COG2987 HutU Urocanate hydrata 26.3 1.1E+02 0.0023 24.2 3.5 19 82-100 243-261 (561)
452 KOG1524 WD40 repeat-containing 25.5 3.2E+02 0.0069 22.3 5.9 58 32-90 570-628 (737)
453 COG0320 LipA Lipoate synthase 25.3 71 0.0015 23.3 2.3 46 48-95 194-242 (306)
454 PF08343 RNR_N: Ribonucleotide 25.2 53 0.0011 19.0 1.4 41 66-106 3-45 (82)
455 KOG4648 Uncharacterized conser 24.9 2.6E+02 0.0056 21.5 5.1 47 44-90 106-157 (536)
456 PF07304 SRA1: Steroid recepto 24.9 61 0.0013 21.3 1.9 48 81-128 71-119 (157)
457 PF03943 TAP_C: TAP C-terminal 24.3 35 0.00075 17.6 0.5 23 76-98 25-48 (51)
458 COG1084 Predicted GTPase [Gene 24.2 37 0.0008 25.3 0.8 55 32-86 120-188 (346)
459 cd08787 CARD_NOD2_1_CARD15 Cas 24.0 76 0.0016 18.3 1.8 28 3-30 5-32 (87)
460 PF00566 RabGAP-TBC: Rab-GTPas 23.9 65 0.0014 21.6 2.0 36 123-158 153-188 (214)
461 PF12554 MOZART1: Mitotic-spin 23.8 1.2E+02 0.0026 15.6 3.3 23 75-97 15-37 (48)
462 PRK14713 multifunctional hydro 23.7 3.9E+02 0.0084 21.5 8.1 91 62-152 418-519 (530)
463 PHA01754 hypothetical protein 23.3 1E+02 0.0023 16.6 2.2 18 81-98 47-64 (69)
464 PF09520 RE_TdeIII: Type II re 23.1 2E+02 0.0043 20.6 4.2 83 32-114 49-135 (251)
465 KOG2908 26S proteasome regulat 22.8 3.5E+02 0.0076 20.6 9.0 88 66-153 77-176 (380)
466 PF04090 RNA_pol_I_TF: RNA pol 22.8 2.7E+02 0.0058 19.2 5.3 54 37-90 43-102 (199)
467 PRK07003 DNA polymerase III su 22.6 5E+02 0.011 22.4 8.3 90 7-98 164-279 (830)
468 smart00164 TBC Domain in Tre-2 22.6 1.9E+02 0.004 19.2 4.0 45 85-129 152-197 (199)
469 COG3682 Predicted transcriptio 22.5 2.1E+02 0.0046 18.0 4.1 34 80-114 20-53 (123)
470 PF02758 PYRIN: PAAD/DAPIN/Pyr 22.4 39 0.00085 19.3 0.6 35 120-156 47-81 (83)
471 KOG3870 Uncharacterized conser 22.3 3.8E+02 0.0083 20.9 6.6 17 30-46 88-104 (434)
472 PHA02884 ankyrin repeat protei 22.2 3.2E+02 0.0069 20.2 5.2 86 38-133 33-131 (300)
473 TIGR01503 MthylAspMut_E methyl 22.2 1.3E+02 0.0028 23.7 3.3 20 105-124 92-111 (480)
474 PF04124 Dor1: Dor1-like famil 22.2 3.4E+02 0.0074 20.2 6.8 23 39-61 110-133 (338)
475 PRK14956 DNA polymerase III su 22.2 3.8E+02 0.0082 21.4 5.9 62 75-136 211-285 (484)
476 KOG0550 Molecular chaperone (D 22.1 4E+02 0.0087 21.0 7.7 122 35-158 168-311 (486)
477 PF02184 HAT: HAT (Half-A-TPR) 22.1 84 0.0018 14.6 1.5 23 80-104 3-25 (32)
478 PF05664 DUF810: Protein of un 22.0 1.4E+02 0.0031 24.8 3.7 64 93-156 211-285 (677)
479 PF07827 KNTase_C: KNTase C-te 21.8 2.4E+02 0.0051 18.3 4.9 117 21-148 4-132 (143)
480 PRK00847 thyX FAD-dependent th 21.6 2.7E+02 0.0059 19.2 4.7 17 80-96 130-146 (217)
481 PRK09517 multifunctional thiam 21.3 5.1E+02 0.011 22.0 8.1 89 62-152 644-743 (755)
482 KOG4279 Serine/threonine prote 21.1 5.5E+02 0.012 22.2 6.9 81 21-101 184-282 (1226)
483 COG1899 DYS1 Deoxyhypusine syn 21.1 99 0.0021 22.9 2.4 29 66-94 21-54 (318)
484 PF12816 Vps8: Golgi CORVET co 21.0 2.6E+02 0.0057 19.0 4.4 44 33-76 20-64 (196)
485 KOG1166 Mitotic checkpoint ser 20.8 3.8E+02 0.0082 23.6 6.0 49 111-159 90-139 (974)
486 PF08461 HTH_12: Ribonuclease 20.7 1.6E+02 0.0035 16.0 3.0 43 71-113 4-46 (66)
487 PRK14963 DNA polymerase III su 20.5 4.5E+02 0.0098 21.0 8.5 71 26-98 188-275 (504)
488 PF07149 Pes-10: Pes-10; Inte 20.3 4E+02 0.0088 20.4 7.9 131 29-161 91-272 (370)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.98 E-value=6e-32 Score=212.63 Aligned_cols=158 Identities=15% Similarity=0.220 Sum_probs=148.0
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCch
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~ 81 (162)
++++..+...|++++|++++..|.+.|+.|+..+||+|+++|+ .|++++|.++|++|. ||..+||+||.+|+++|+.+
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHH
Confidence 3444455555788889999999999999999999999999999 999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH-HhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+|+++|++|.+.|+.||..||++++.+|++.|..++|.++|..|.+ .|+.|+..+|++++++|++.|++++|.++|++|
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999976 699999999999999999999999999999998
Q ss_pred C
Q 045917 161 P 161 (162)
Q Consensus 161 ~ 161 (162)
+
T Consensus 489 ~ 489 (697)
T PLN03081 489 P 489 (697)
T ss_pred C
Confidence 6
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.98 E-value=1.1e-31 Score=211.06 Aligned_cols=143 Identities=22% Similarity=0.381 Sum_probs=131.4
Q ss_pred cchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 045917 20 HQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP 97 (162)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 97 (162)
++++..+.+.|+.||..+||+|+++|+ .|++++|.++|++|+ +|.++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 333333344455566667788999999 999999999999999 999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccCC
Q 045917 98 DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162 (162)
Q Consensus 98 ~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~~ 162 (162)
|..||++++.+|++.|++++|++++..|.+.|+.||..+|++|+++|+++|++++|.++|++|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999974
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=2.1e-31 Score=214.26 Aligned_cols=152 Identities=14% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~ 82 (162)
.+...|+++.|.++++.|++.|+.||..+|++||.+|+ .|++++|.++|++|. ||..+||++|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 33333444445555555555555555555555555555 555555555555444 444555555555555555555
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH--HhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK--VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
|.++|++|++.|+.||..||+++|.+|++.|++++|.+++.+|.+ .|+.||..+|++|+.+|+++|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555554444445544455555554444444444444444433 334444444444444444444444444444444
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=2.6e-31 Score=213.67 Aligned_cols=157 Identities=10% Similarity=0.132 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcC
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKT 77 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~ 77 (162)
++++..+.++|++++|.++|+.|.+.|+.|++.+||+++.+|+ .|++++|.++|++|. ||..+|+++|.+|++.
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444444444555555555555555555555555555555555 555555555555554 5555555555555555
Q ss_pred CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccc
Q 045917 158 DEM 160 (162)
Q Consensus 158 ~~m 160 (162)
++|
T Consensus 743 ~eM 745 (1060)
T PLN03218 743 SEM 745 (1060)
T ss_pred HHH
Confidence 554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=5.5e-31 Score=211.12 Aligned_cols=158 Identities=22% Similarity=0.325 Sum_probs=148.2
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchH
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~ 82 (162)
.++..+...|+.+.+++++..+.+.|+.||..+||+|+.+|+ .|++++|.++|++|. ||..+||++|.+|++.|++++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHH
Confidence 334444444677888888999999999999999999999999 999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccCC
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~~ 162 (162)
|+++|++|.+.|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++|+++|++++|.++|++|++
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=6.9e-31 Score=210.59 Aligned_cols=146 Identities=19% Similarity=0.308 Sum_probs=131.8
Q ss_pred hhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 17 HHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
..+.+++..+.+.|+.|++.++|+|+.+|+ .|+++.|.++|++|+ ||.++||++|.+|++.|++++|+++|++|.+.|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 334444444444455555566678888888 999999999999999 999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccCC
Q 045917 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162 (162)
Q Consensus 95 ~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~~ 162 (162)
+.||..||+.++.+|++.|+.+.|++++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|++
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999973
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.72 E-value=1e-17 Score=88.69 Aligned_cols=50 Identities=40% Similarity=0.701 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
||.++||++|.+|++.|++++|.++|++|++.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999985
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.61 E-value=9.9e-16 Score=81.04 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=48.9
Q ss_pred CCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 97 p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
||..+||++|++|++.|++++|.+++++|.+.|++||..||+.+|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.41 E-value=2.6e-13 Score=65.50 Aligned_cols=34 Identities=38% Similarity=0.434 Sum_probs=31.9
Q ss_pred HhcCcchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 128 ~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
.|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999996
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.32 E-value=8.6e-11 Score=87.17 Aligned_cols=151 Identities=13% Similarity=0.015 Sum_probs=75.0
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCch----hHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcC
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNT----YIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKT 77 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~ 77 (162)
..++...|+.++|.+.++.+.+.+..+.. ..+..+...+. .|+.++|...|+++. | +...+..+...+.+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 33444445555555555555443322211 12233334444 555666655555554 2 233444555555555
Q ss_pred CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
|++++|.++|+++.+.+-.....+++.+..++.+.|+.++|...+..+.+. .|+...+..+...|.+.|++++|.++|
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666666655554321111234455555555556666665555555443 234444455555566666666666555
Q ss_pred cc
Q 045917 158 DE 159 (162)
Q Consensus 158 ~~ 159 (162)
++
T Consensus 306 ~~ 307 (389)
T PRK11788 306 RE 307 (389)
T ss_pred HH
Confidence 54
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.27 E-value=2.1e-10 Score=85.08 Aligned_cols=150 Identities=6% Similarity=-0.109 Sum_probs=81.1
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC------hhHHHHHHHHHHcCC
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP------LFAYNTLIRAYAKTS 78 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~------~~~~~~li~~~~~~~ 78 (162)
.+...|+.++|..++..+.+. -+.+..+++.+...+. .|++++|...++.+. |+ ...|..+...+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 333445555566655555443 1233445555566666 666666666666554 21 112334444555566
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++++|...|+++.+.. +.+...+..+...+.+.|++++|.+++..+.+.+......+++.+..+|.+.|++++|.+.++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665432 112334455556666666666666666666554322223455666666666677776666665
Q ss_pred cc
Q 045917 159 EM 160 (162)
Q Consensus 159 ~m 160 (162)
++
T Consensus 274 ~~ 275 (389)
T PRK11788 274 RA 275 (389)
T ss_pred HH
Confidence 53
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=2e-10 Score=84.05 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=103.2
Q ss_pred HHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 045917 26 FLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 99 (162)
+...-.+.++.++.++|.+.| -...+.|..++++.. .+..+||.+|.+-.-. ...++..+|....++||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 333445667889999999999 889999999999887 7888999998876543 237889999999999999
Q ss_pred ccHHHHHHHhhhhccchhhh----HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhH
Q 045917 100 LTYPFVVKASDQCLLIGVGG----SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~----~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
.|||+++++..+.|+++.+. ++..+|.+-|+.|...+|..+|..+++.++.-+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 99999999999999887665 567788889999999999999999998777643
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.4e-09 Score=79.68 Aligned_cols=153 Identities=13% Similarity=0.121 Sum_probs=115.9
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC--CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchH
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~ 82 (162)
.++.-+.++..++.|.+++++......+.+..++|.+|...+ .|+---++-+-..|.||..|+|+++++.++-|+++.
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ 291 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFED 291 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHH
Confidence 445556666788999999999999999999999999999887 553223333333333999999999999999998876
Q ss_pred H----HHHHHHHHHcCCCCCCccHHHHHHHhhhhccchh-hhHHHHHHHH----HhcC----cchhHHHHHHHHHHhcCC
Q 045917 83 S----IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV-GGSVHSLIFK----VGLH----SDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 83 a----~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~-a~~i~~~~~~----~~~~----~~~~~~~~ll~~y~~~g~ 149 (162)
| ++++.+|++-|++|...+|..+|.-+++.++-.+ +..+..++.. +.++ .|...+.+-+..+.+..+
T Consensus 292 ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d 371 (625)
T KOG4422|consen 292 ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRD 371 (625)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhh
Confidence 5 5778899999999999999999999998877644 4444455433 2232 345556677787778888
Q ss_pred hhHHHHhh
Q 045917 150 IDFAKALF 157 (162)
Q Consensus 150 ~~~a~~~~ 157 (162)
.+-|.++-
T Consensus 372 ~~LA~~v~ 379 (625)
T KOG4422|consen 372 LELAYQVH 379 (625)
T ss_pred HHHHHHHH
Confidence 88888764
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.13 E-value=3.5e-09 Score=85.27 Aligned_cols=152 Identities=11% Similarity=-0.010 Sum_probs=117.1
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~ 81 (162)
..++...|+.++|.+.+..+.+.. +.++..+..+-..|. .|+.++|...|+.+. .+...++.+...+...|+ .
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 344455566667777666665542 345667777777777 888888888888775 457778888888888888 7
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
+|+..+++..... +-+..++..+...+...|++++|..+++.+.+.+. .+..++..+..+|.+.|+.++|.+++++|.
T Consensus 821 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 821 RALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7888888876542 22344566777888899999999999999998775 389999999999999999999999999886
Q ss_pred C
Q 045917 162 E 162 (162)
Q Consensus 162 ~ 162 (162)
+
T Consensus 899 ~ 899 (899)
T TIGR02917 899 N 899 (899)
T ss_pred C
Confidence 3
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.06 E-value=1.1e-08 Score=82.56 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=84.2
Q ss_pred HHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
...|+.++|...+..+.+.. +.+..++..+...+. .|++++|..+++.+. .+...+..+...+.+.|++++|..
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 33445555555555444321 223445555555555 555555555555554 344555555566666666666666
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.|+++.+.+ |+..++..+...+.+.|+.++|.+.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++
T Consensus 725 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 725 AYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 666665432 444555566666666666666666666665543 345666666667777777777777776654
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.04 E-value=2.7e-10 Score=54.87 Aligned_cols=29 Identities=48% Similarity=0.778 Sum_probs=14.4
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
||.+|||++|.+|++.|++++|.++|++|
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44445555555555555555555554444
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.99 E-value=8.9e-10 Score=53.27 Aligned_cols=35 Identities=43% Similarity=0.712 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 99 (162)
.+||++|.+|++.|++++|.++|++|++.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.90 E-value=3.1e-09 Score=51.10 Aligned_cols=33 Identities=42% Similarity=0.736 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP 97 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 97 (162)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999887
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.85 E-value=4.7e-07 Score=61.79 Aligned_cols=150 Identities=8% Similarity=-0.046 Sum_probs=98.4
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a 83 (162)
.+...|+.++|.+.++...+.. +.+...+..+-..+. .|++++|...++... .+...+..+-..+...|++++|
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHH
Confidence 3344466777777777665443 233455566666666 888888888887665 3455666677777778888888
Q ss_pred HHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 84 IKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 84 ~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
...+++..+....| ....+..+...+...|++++|...+....+.. +.+...+..+...|...|++++|.+.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888876542222 23345556666777778888887777766643 224556677777777888888887777653
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=6.6e-08 Score=68.95 Aligned_cols=151 Identities=11% Similarity=-0.080 Sum_probs=101.8
Q ss_pred HHHHHHhhchhhhcchhHHHHHhc-CCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCc
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTS-LDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~ 80 (162)
+.++...++.+++.++++.+.... .+.++..|..+-..+. .|+.++|.+.++..- |+ ....+.++..+...|+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence 344556677788888887776433 3456677777777777 999999999999876 64 77788899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++.+++....... +.|...+..+..++...|+.++|...++...+.. +.|+.+...+.+++...|+.++|.++..+
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 99888888876654 5566677888899999999999999998887753 45788888899999999999999888654
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.74 E-value=1.4e-08 Score=47.65 Aligned_cols=31 Identities=39% Similarity=0.686 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 95 (162)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.74 E-value=1.2e-06 Score=59.71 Aligned_cols=151 Identities=8% Similarity=-0.085 Sum_probs=117.9
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--C----ChhHHHHHHHHHHcCCC
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--P----PLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~----~~~~~~~li~~~~~~~~ 79 (162)
..++...|+.++|.+.++...... +.+...+..+-..+. .|++++|...|+... + ....+..+-..+...|+
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence 344455578889999998887654 334556677777778 999999999999885 2 24456667778889999
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++|...+.+..+.. +.+...+..+...+...|++++|...++...+. .+.+...+..+...+...|+.+.|.++++.
T Consensus 151 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 151 FDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999987642 223456778888999999999999999988776 345667777888999999999999998765
Q ss_pred c
Q 045917 160 M 160 (162)
Q Consensus 160 m 160 (162)
+
T Consensus 229 ~ 229 (234)
T TIGR02521 229 L 229 (234)
T ss_pred H
Confidence 4
No 23
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.62 E-value=4.4e-08 Score=47.10 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=31.6
Q ss_pred ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcch
Q 045917 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK 134 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~ 134 (162)
.+||++|.+|++.|++++|.+++..|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998874
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.59 E-value=2.1e-07 Score=73.70 Aligned_cols=140 Identities=17% Similarity=0.137 Sum_probs=93.6
Q ss_pred chhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----------------------------CChhHHHHH
Q 045917 21 QLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----------------------------PPLFAYNTL 70 (162)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----------------------------~~~~~~~~l 70 (162)
.++..+...|+.|+..||.+++..|| .|+++.|- +|.-|+ |..-+|+.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 57788999999999999999999999 99999998 777552 567789999
Q ss_pred HHHHHcCCCchHHHHHHHH-HHH-------cCCC-----------------CCCccHHH--HHHHhhh--------h---
Q 045917 71 IRAYAKTSCSIESIKLFDE-MLK-------TGLR-----------------PDNLTYPF--VVKASDQ--------C--- 112 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~-m~~-------~~~~-----------------p~~~t~~~--li~~~~~--------~--- 112 (162)
..+|..+||+.. ++..++ |.. .|+. ||..+-.. +.+++.. .
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999999999876 333333 321 1211 22221111 0111100 0
Q ss_pred --------------ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccCC
Q 045917 113 --------------LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMPE 162 (162)
Q Consensus 113 --------------~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~~ 162 (162)
.+....+++.....+..-.|+..++..++++-...|+++.|..++.+|++
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 01122222322222222258999999999999999999999999999974
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.55 E-value=5.1e-06 Score=66.07 Aligned_cols=47 Identities=17% Similarity=-0.048 Sum_probs=19.5
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhh
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNV 60 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m 60 (162)
.|+.++|...++...+.. +.++..+..+...+. .|+.++|...++.+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 344444444444443321 112333344444444 55555554444433
No 26
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.54 E-value=1.3e-06 Score=53.08 Aligned_cols=82 Identities=15% Similarity=0.027 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCCCccHHHHHHHhhhhc--------cchhhhHHHHHHHHHhcCcchhH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCL--------LIGVGGSVHSLIFKVGLHSDKYI 136 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~~--------~~~~a~~i~~~~~~~~~~~~~~~ 136 (162)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++.. .+-....++++|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 999999999999988753 24456678999999999999999
Q ss_pred HHHHHHHHHhc
Q 045917 137 GNTLLRMYAAC 147 (162)
Q Consensus 137 ~~~ll~~y~~~ 147 (162)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999987664
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.54 E-value=4.5e-06 Score=66.36 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchh-HHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY-IGNTLLRM 143 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~-~~~~ll~~ 143 (162)
.+..+-..+.+.|++++|...+++..+. .|+ ...+..+...+.+.|++++|...+..+.... |+.. .+..+-.+
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~a 361 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHH
Confidence 4444444444444444444444444332 122 1223333444444455555544444444331 2221 12222334
Q ss_pred HHhcCChhHHHHhhc
Q 045917 144 YAACKEIDFAKALFD 158 (162)
Q Consensus 144 y~~~g~~~~a~~~~~ 158 (162)
|...|+.++|...|+
T Consensus 362 l~~~G~~deA~~~l~ 376 (656)
T PRK15174 362 LLQAGKTSEAESVFE 376 (656)
T ss_pred HHHCCCHHHHHHHHH
Confidence 445555555555444
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.54 E-value=2.5e-07 Score=66.01 Aligned_cols=123 Identities=10% Similarity=0.036 Sum_probs=59.8
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-CccHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFV 105 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~l 105 (162)
++..+...+..+. .++.+.+..+++... .+...|..+-..+.+.|+.++|++.|++..+ ..|+ ......+
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l 186 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNAL 186 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHH
Confidence 3334444555555 555555555555543 2444555555555566666666666666544 2233 3334555
Q ss_pred HHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+..+...|+.+++..++....+.. +.|...+..+-.+|...|+.++|...|++
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 555556666665555555554442 34455556666666666666666666543
No 29
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.52 E-value=1.4e-07 Score=45.12 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=28.4
Q ss_pred ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc
Q 045917 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~ 132 (162)
.||+++|++|++.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.48 E-value=1.2e-05 Score=63.49 Aligned_cols=142 Identities=10% Similarity=-0.102 Sum_probs=92.0
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
|+.++|...++...... +-....|..+-..+. .|++++|...|+... .+...|..+-..+...|++++|...|+
T Consensus 345 g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 345 GKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666666654432 112344555555566 777777777777654 345667777777777777777777777
Q ss_pred HHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 89 EMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 89 ~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+..+. .|+ ...+..+...+.+.|++++|...+....+.. +.+...++.+-..|...|++++|.+.|++
T Consensus 424 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 424 KSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 76553 233 3445556666677777888887777766542 33466777777788888888888777654
No 31
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.48 E-value=3.4e-06 Score=63.15 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=99.1
Q ss_pred cCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--C-----ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc
Q 045917 30 SLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--P-----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT 101 (162)
Q Consensus 30 ~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 101 (162)
+.+.++....++++.+. ..+++++..++-..+ | -..|..++|+.|.+.|..+.++.+++.=.+.|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 35567778888888888 888999999888776 2 244667999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc
Q 045917 102 YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 102 ~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~ 147 (162)
||.|++.+.+.|++..|.++...|...+...+..|+.--+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998887776666667766555555554
No 32
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.47 E-value=8.7e-08 Score=44.85 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHhhcccCC
Q 045917 135 YIGNTLLRMYAACKEIDFAKALFDEMPE 162 (162)
Q Consensus 135 ~~~~~ll~~y~~~g~~~~a~~~~~~m~~ 162 (162)
++|+.++++|++.|++++|.++|++|++
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 4788999999999999999999988864
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=98.47 E-value=9.7e-06 Score=63.32 Aligned_cols=142 Identities=11% Similarity=-0.024 Sum_probs=98.6
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
..+|...++...... +-++..+..+-..+. .|++++|...|++.. |+ ...|..+-..+...|++++|...+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456666666655443 224555666655666 899999999998876 54 556777778888899999999999998
Q ss_pred HHcCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 91 LKTGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 91 ~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+. .|+.. .+..+...+...|++++|...+....+...+-+...+..+-.+|...|+.++|.+.+.+.
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 664 34432 223334445667888889888888765532223455667777888899999999888764
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.46 E-value=1.3e-05 Score=66.24 Aligned_cols=147 Identities=10% Similarity=-0.028 Sum_probs=102.3
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~ 84 (162)
++...|+.++|.+.++...+.. +.....+..+..... .|++++|...+++.. |+...|..+-..+.+.|+.++|.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3444567777777777776543 112222222222222 488888888888776 77778888888888888888888
Q ss_pred HHHHHHHHcCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 85 KLFDEMLKTGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..|++..+. .|+.. .++.+-..+...|+.++|...+....+.. +-+...+..+-.+|...|++++|...|++
T Consensus 630 ~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 630 SDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888887653 35443 44556667888888888888888877753 23567788888888899999988888765
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.46 E-value=7.6e-06 Score=64.66 Aligned_cols=145 Identities=10% Similarity=-0.081 Sum_probs=115.6
Q ss_pred hchhhhcchhHHHHHhc-CCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHHHH
Q 045917 14 KTAHHHHQLPALFLKTS-LDH-NTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
++.++|.+.++.....+ ..| ....++.+-..+. .|++++|...|+... |+ ...|..+-..+...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46778888888887665 334 3455666666777 999999999999876 54 55788888889999999999999
Q ss_pred HHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 87 ~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
|++..+.. +-+...|..+-..+...|++++|...+....+.. +.+...+..+-.+|.+.|++++|...|++.
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99987642 2345677888888999999999999999988764 335677888888999999999999998753
No 36
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=1.2e-05 Score=59.79 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=96.8
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 114 (162)
....|++.+. .++++.|..+|+++. .++...-.+...+...++-.+|.+++.+..+. .+-+......-.+.+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3455666666 899999999999998 44455666888888889999999999998743 22233444444567888999
Q ss_pred chhhhHHHHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 115 IGVGGSVHSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 115 ~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
.+.|..+.+...+. .|+ ..+|..|..+|.+.|++++|.-.++.+|
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999998876 355 5699999999999999999999998876
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=98.34 E-value=2.7e-05 Score=60.82 Aligned_cols=147 Identities=14% Similarity=-0.053 Sum_probs=103.5
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChh-HHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLF-AYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~-~~~~li~~~~~~~~~~ 81 (162)
..++...|+.++|...++...+.+ +.++..+..+-..+. .|+.++|...++... |+.. .+..+...+...|+++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHH
Confidence 344556688899999999887765 334556666667777 999999999999986 5532 3334444566789999
Q ss_pred HHHHHHHHHHHcCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 82 ESIKLFDEMLKTGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+|...+++..... .|+.. .+..+-..+...|+.++|...+..+... .|+ ....+.+-..|+..| +.|...+++
T Consensus 424 eA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 424 DAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 9999999986543 34433 3566777788899999999998876543 333 444555666777777 466666554
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.33 E-value=5.2e-05 Score=61.49 Aligned_cols=152 Identities=7% Similarity=-0.070 Sum_probs=119.7
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCC
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~ 79 (162)
-++.+....|+.++|.+++....... +.+...+..+-..+. .|++++|..+|+... | +...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 35666777789999998888876522 334445777777788 999999999999964 4 46677888889999999
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++|...+++..+. .|+...+..+...+...|+.++|...++.+.+... -+...+..+...+...|..+.|.+.++.
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999998765 34333377788888899999999999999988742 3456666788888899999999988775
Q ss_pred c
Q 045917 160 M 160 (162)
Q Consensus 160 m 160 (162)
.
T Consensus 176 ~ 176 (765)
T PRK10049 176 A 176 (765)
T ss_pred C
Confidence 4
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.27 E-value=4.8e-05 Score=62.92 Aligned_cols=144 Identities=8% Similarity=-0.105 Sum_probs=80.9
Q ss_pred HHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CCh-hHHHHHHHHHHcCCCchHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPL-FAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~-~~~~~li~~~~~~~~~~~a~~ 85 (162)
...|+.++|...++.+... +|+...+..+-..+. .|+.++|...|+... |+. ..+..+.....+.|++++|..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455666666666654332 233333333334444 667777776666655 222 111122222333477777777
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|++..+ +.|+...+..+-..+.+.|+.++|...+....... +-+...+..+-..+...|+.++|...|++
T Consensus 598 ~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 598 DLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7766654 23455566666667777777777777777766653 22355556666677777777777766653
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.23 E-value=7.9e-05 Score=60.47 Aligned_cols=147 Identities=4% Similarity=-0.111 Sum_probs=106.2
Q ss_pred HHhhchhhhcchhHHHHHhcCC-CchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-----hhHHHHHHHHHHcCCCc
Q 045917 11 QLSKTAHHHHQLPALFLKTSLD-HNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-----LFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-----~~~~~~li~~~~~~~~~ 80 (162)
-..++.++|...++.+.+.+.+ |+- ....+-..|. .|++++|...|+... |. ......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3447788899999998877632 321 1222344666 999999999999875 32 23456677788899999
Q ss_pred hHHHHHHHHHHHcC-----------CCCCCc---cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 81 IESIKLFDEMLKTG-----------LRPDNL---TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 81 ~~a~~~~~~m~~~~-----------~~p~~~---t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
++|...++++.... -.|+.. .+..+...+...|+.++|.++++.+.... +.+...+..+...+.+
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 99999999987642 113321 23456677788899999999998887653 4457788888888888
Q ss_pred cCChhHHHHhhcc
Q 045917 147 CKEIDFAKALFDE 159 (162)
Q Consensus 147 ~g~~~~a~~~~~~ 159 (162)
.|++++|++.+++
T Consensus 406 ~g~~~~A~~~l~~ 418 (765)
T PRK10049 406 RGWPRAAENELKK 418 (765)
T ss_pred cCCHHHHHHHHHH
Confidence 9999998888775
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.22 E-value=5.7e-05 Score=63.87 Aligned_cols=145 Identities=11% Similarity=-0.054 Sum_probs=110.6
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~ 82 (162)
..+...|+.++|..+++ ..+.++..+..+-..+. .|+.++|...|+... .+...+..+...|...|+.++
T Consensus 581 ~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34555677788887766 23455566666777777 999999999999887 457889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCC-ccHHHHHHHhhhhccchhhhHHHHHHHHHhc--Cc---chhHHHHHHHHHHhcCChhHHHHh
Q 045917 83 SIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--HS---DKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~--~~---~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
|.+.++...+ ..|+. .+...+...+...|+.++|.++++.+..... .| +..++..+-..|.+.|+.++|.+.
T Consensus 656 A~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 656 ARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999997754 34443 3345566777889999999999999876532 12 224566667889999999999998
Q ss_pred hcc
Q 045917 157 FDE 159 (162)
Q Consensus 157 ~~~ 159 (162)
|++
T Consensus 734 y~~ 736 (1157)
T PRK11447 734 YKD 736 (1157)
T ss_pred HHH
Confidence 865
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=0.00014 Score=58.20 Aligned_cols=149 Identities=6% Similarity=-0.056 Sum_probs=114.7
Q ss_pred HHHHHhhchhhhcchhHHHH--HhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCc
Q 045917 8 TLIQLSKTAHHHHQLPALFL--KTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~ 80 (162)
.++.+.+.+..+..-+..++ .+..+.++..+-.|-.... .|..++|+.+++... |+ ...+..+...+.+.+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH
Confidence 34444444444444443333 2445666777777777777 999999999999887 65 66788889999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCccH-HHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 81 IESIKLFDEMLKTGLRPDNLTY-PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~-~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
++|+..+++..+ ..|+..+. ..+-.++.+.|++++|..+|+.+...+ .-+...+.++=.++-+.|+.++|...|++
T Consensus 137 eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 137 EAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999866 45666655 555677888999999999999999843 23478899999999999999999998875
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.18 E-value=0.0002 Score=53.80 Aligned_cols=116 Identities=10% Similarity=-0.046 Sum_probs=69.8
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc-cHHHHHHHhhhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL-TYPFVVKASDQC 112 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~ 112 (162)
...+-..+. .|+.++|.+++++.- ++. --.++.+....++.+++++..+...+. .|+.. ...++-..|.+.
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHC
Confidence 333344444 555566655555443 222 111233333446666666666655432 23333 355666777777
Q ss_pred ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 113 ~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++++|++.++...+. .|+...+..+-..+.+.|+.++|.+.+.+
T Consensus 342 ~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 342 GEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888777764 57777777888888888888888777653
No 44
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.16 E-value=7.2e-06 Score=58.87 Aligned_cols=120 Identities=7% Similarity=-0.046 Sum_probs=55.3
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC---CC---hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM---PP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~---~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
....+..|. .++++.|.+.++.|+ .| +....+.++.+.-.+++.+|.-+|+++.+ ...+++.+.+.+..++.
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHH
Confidence 344455555 666666666666665 22 12222333333333456666666666533 23445555555555555
Q ss_pred hhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh-hHHHHhhcc
Q 045917 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI-DFAKALFDE 159 (162)
Q Consensus 111 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~-~~a~~~~~~ 159 (162)
..|++++|+++..+..... +-+..+.-.++-+..-.|.. +.+.+.+.+
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 5666666666555543322 22344444444444444444 444444443
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.16 E-value=0.00023 Score=57.98 Aligned_cols=152 Identities=6% Similarity=-0.039 Sum_probs=123.5
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----------CChhHHHHHHHHHH
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----------PPLFAYNTLIRAYA 75 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----------~~~~~~~~li~~~~ 75 (162)
+-+|..-++..++.+-|+.+...+.+...++-..+-++|. .++.++|+.+|+... ++......|..+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 4556677788999999999999998888889999999999 999999999999874 12333578999999
Q ss_pred cCCCchHHHHHHHHHHHcCC-----------C--CCCcc-HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH
Q 045917 76 KTSCSIESIKLFDEMLKTGL-----------R--PDNLT-YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~-----------~--p~~~t-~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll 141 (162)
..+++++|..+++++.+..- . ||... +..++..+...|++.+|++.++.+.... +-|..+...+-
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999987311 1 22222 2345677888999999999999997654 56789999999
Q ss_pred HHHHhcCChhHHHHhhcc
Q 045917 142 RMYAACKEIDFAKALFDE 159 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~ 159 (162)
+.+...|.+..|++.++.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 458 SIYLARDLPRKAEQELKA 475 (822)
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 999999999999998854
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.15 E-value=1.4e-05 Score=63.71 Aligned_cols=89 Identities=9% Similarity=-0.008 Sum_probs=80.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll 141 (162)
|++.+|.+++..-..+|+.+.|..++.+|++.|+..+.+-|-.|+-+ .++...++.+.+.|...|+.|+..|+.-.+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 89999999999999999999999999999999999999998888877 778889999999999999999999998888
Q ss_pred HHHHhcCChhHH
Q 045917 142 RMYAACKEIDFA 153 (162)
Q Consensus 142 ~~y~~~g~~~~a 153 (162)
....++|....+
T Consensus 279 ip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 279 IPQLSNGQTKYG 290 (1088)
T ss_pred Hhhhcchhhhhc
Confidence 777776664443
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.14 E-value=9.4e-05 Score=55.57 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 133 DKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 133 ~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
++.....+...+...|+.++|.+++++
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455566667777778888887777654
No 48
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.13 E-value=1.8e-05 Score=59.38 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=80.5
Q ss_pred chhhhcchhHHHHHh--cCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 15 TAHHHHQLPALFLKT--SLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
+++++..++-.++.. ....-+.|..++++.|. .|..+.+..+++.=. ||.+++|.+|..+.+.|++..|.++
T Consensus 81 ~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V 160 (429)
T PF10037_consen 81 DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKV 160 (429)
T ss_pred HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHH
Confidence 445566655555443 23344566679999999 999999999999754 9999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccHHHHHHHhhhh
Q 045917 87 FDEMLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 87 ~~~m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
..+|...+.-.+..|+..-+.+|.+.
T Consensus 161 ~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 161 ATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999888888889988888887776
No 49
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.12 E-value=2.7e-05 Score=52.89 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=58.0
Q ss_pred HHHHhhhhC---CChhHHHHHHHHHHc-----CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc-----------
Q 045917 53 TRSLFNNVM---PPLFAYNTLIRAYAK-----TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL----------- 113 (162)
Q Consensus 53 a~~~~~~m~---~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~----------- 113 (162)
....|+... .+-.+|..+|..|.+ +|.++-....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 344455442 555666666666554 3556666666666666666666666666666665521
Q ss_pred -----cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC
Q 045917 114 -----LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 114 -----~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~ 149 (162)
.-+-|.++.++|...|+.||..++..|++.|.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 123455666677777777777777777766665443
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.09 E-value=0.00018 Score=60.93 Aligned_cols=148 Identities=7% Similarity=-0.016 Sum_probs=80.8
Q ss_pred HHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~ 84 (162)
+...|+.++|.+.++...+... -++..+..+-..|. .|++++|...++... |+ ...+-.+-..+...++.++|.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 3345677788887777765432 23445556666667 888888888887763 32 222221111222233333333
Q ss_pred HHHHHHHHc---------------------------------------CCCCCCccHHHHHHHhhhhccchhhhHHHHHH
Q 045917 85 KLFDEMLKT---------------------------------------GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 85 ~~~~~m~~~---------------------------------------~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
..++.+... ..+.+...+..+-..+.+.|+.++|...++.+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333221100 11233344455566666667777777777666
Q ss_pred HHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 126 ~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+.. +.+...+..+...|.+.|+.++|.+.++.
T Consensus 630 l~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 630 LTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6543 23456666666677777777777666654
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.05 E-value=0.0008 Score=50.79 Aligned_cols=124 Identities=9% Similarity=-0.108 Sum_probs=71.6
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHH-HHHHHH--HcCCCchHHHHHHHHHHHcCCCCCCc--c-HH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYN-TLIRAY--AKTSCSIESIKLFDEMLKTGLRPDNL--T-YP 103 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~-~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~--t-~~ 103 (162)
++..+..+...+. .|+.++|..++++.. ||..... .++..+ ...++.+.+.+.++...+ ..|+.. . ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHH
Confidence 4444444555555 666666666666554 3332100 022222 223455555555544432 234444 2 33
Q ss_pred HHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 104 ~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
++-..+.+.|++++|.+.++........|+...+..+-..+.+.|+.++|.+++++
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666677788888888887544544567777777888888888888888887764
No 52
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.04 E-value=5.5e-05 Score=54.37 Aligned_cols=111 Identities=11% Similarity=-0.051 Sum_probs=86.2
Q ss_pred hhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh----hccchhh
Q 045917 44 TSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ----CLLIGVG 118 (162)
Q Consensus 44 ~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~~a 118 (162)
.+. .|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. -+..+...+..+... ...+.+|
T Consensus 111 i~~~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHHcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 344 89999999998875 45667778889999999999999999999865 244555556655544 2368999
Q ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 119 ~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+|+++... +.+++.+.+.+..+....|++++|.+++.+
T Consensus 187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999998664 567889999999999999999999998765
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.98 E-value=0.00033 Score=57.10 Aligned_cols=143 Identities=11% Similarity=-0.066 Sum_probs=80.5
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHH---HHHHHcCCCchHHHHHH
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTL---IRAYAKTSCSIESIKLF 87 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~l---i~~~~~~~~~~~a~~~~ 87 (162)
.|+...|.+.+.+..+....-.+..+ .++..+. .|+.++|...++... |+...+..+ ...|...|++++|.++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666677766666554432222233 6666677 777777777777776 432222222 33556667777777777
Q ss_pred HHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 88 DEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 88 ~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+++.+.. |+ ...+..++..+...++.++|.+.+..+.+. .|+...+-.++..+...++..+|.+.++++
T Consensus 126 ~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 126 QSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 7775532 22 233445566666677777777766666554 344444433333333344444466666554
No 54
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00065 Score=47.32 Aligned_cols=122 Identities=8% Similarity=-0.069 Sum_probs=95.5
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
........+... .|++..|...|++.. +|..+||.+=-+|.+.|++++|..-|.+..+... -+....+.+--.+
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~ 178 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHH
Confidence 334455667777 899999999998886 7888999999999999999999998888766321 2344567777778
Q ss_pred hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.-.|+.+.|+.++......+. -|..+-..|.......|++++|+.+-.
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888999999998877776643 367778888889999999999988754
No 55
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.96 E-value=0.00076 Score=49.57 Aligned_cols=148 Identities=9% Similarity=-0.067 Sum_probs=99.2
Q ss_pred HHhhchhhhcchhHHHHHhcCCCchhHHH---HHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDHNTYIIS---RFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~ 82 (162)
...|+.++|..+++...... +.+...+. ....... .+....+.+.+.... |+ ......+-..+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 33467888888888776553 33333333 1222222 566666666665433 33 3344455567788999999
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc-Ccch--hHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-HSDK--YIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-~~~~--~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
|...+++..+.. +.+...+..+-..+...|++++|...+........ .|+. ..|..+-..|...|++++|.+++++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999987743 23345567777888899999999999888766422 1232 3456788899999999999999986
Q ss_pred c
Q 045917 160 M 160 (162)
Q Consensus 160 m 160 (162)
.
T Consensus 212 ~ 212 (355)
T cd05804 212 H 212 (355)
T ss_pred H
Confidence 3
No 56
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.94 E-value=8.9e-05 Score=45.19 Aligned_cols=65 Identities=18% Similarity=0.413 Sum_probs=48.8
Q ss_pred CCChHHHHHHhhhhC------CChhHHHHHHHHHHcC--------CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 47 PISLHFTRSLFNNVM------PPLFAYNTLIRAYAKT--------SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~------~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.+++.....+|+... |+..+||.++.+-+++ +++-..+.+|++|...+++|+..||+.++....+
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 666666666666554 6666666666666654 2456778999999999999999999999988765
No 57
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.93 E-value=0.00024 Score=55.36 Aligned_cols=149 Identities=10% Similarity=0.070 Sum_probs=113.8
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCC
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~ 79 (162)
-+...|.--|++.+|.+.|...+.... .-+...+.|-..|. .|.+++|.++|...- | -...+|.+-..|-+.|+
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 355667777888899998888776543 33455777888888 999999999998765 4 46778999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCC-ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHHHHhh
Q 045917 80 SIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
+++|+.-|++..+ +.|+. ..++.+=+.+-..|+.+.|.+.+...... .|. ....+.|-..|-..|++.+|..-+
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999999865 66653 34666667777778888888877766654 344 566788888888899988887766
Q ss_pred c
Q 045917 158 D 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 480 ~ 480 (966)
T KOG4626|consen 480 R 480 (966)
T ss_pred H
Confidence 4
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.93 E-value=0.00046 Score=52.04 Aligned_cols=145 Identities=16% Similarity=0.092 Sum_probs=74.3
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
|+.+.|.+.+....+....+.....-.....+. .|+.+.|...++.+. | +......+...+...|++++|.+++.
T Consensus 132 g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 132 GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555566666655543321111112222234444 666666666666665 3 44556666666666777777777777
Q ss_pred HHHHcCCCCCCccHH-HHHHHh---hhhccchhhhHHHHHHHHHhc---CcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 89 EMLKTGLRPDNLTYP-FVVKAS---DQCLLIGVGGSVHSLIFKVGL---HSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~-~li~~~---~~~~~~~~a~~i~~~~~~~~~---~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
...+.++.+. ..+. .-..+. ...+..+.+.+....+.+... +.+...+..+...+...|+.+.|.+++++
T Consensus 212 ~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 212 NMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 7666554322 2121 111111 111122222222222222211 12667777788888888888888887765
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.91 E-value=0.00031 Score=45.22 Aligned_cols=96 Identities=8% Similarity=-0.098 Sum_probs=72.9
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
.++..+..+-..+. .|++++|...|+... .+...|..+-..+.+.|++++|...|+...+.. +.+...+..+-.
T Consensus 22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 22 VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 33333444444555 899999999998876 467788888888888999999999999987632 345666777778
Q ss_pred HhhhhccchhhhHHHHHHHHHh
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
++...|+.++|...+....+..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888999999999998887753
No 60
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00027 Score=50.64 Aligned_cols=136 Identities=7% Similarity=0.005 Sum_probs=102.6
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhc-CCCchhHHHHHHHhhCCCChHHHHHHhhhhC----CChhHHHHHHHHHHcCC
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTS-LDHNTYIISRFILTSLPISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTS 78 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~ 78 (162)
-.++.++.+.++.+.|+.+|...++.+ +....+...+++..++.++.+.|.++|+... .+..-|...+..+.+.+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 356677777788999999999998654 4577788888887777888888999999876 67788999999999999
Q ss_pred CchHHHHHHHHHHHcCCCCCC---ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 79 CSIESIKLFDEMLKTGLRPDN---LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~---~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
+.+.|..+|+..... +.++. ..|..+++.=.+.|+++.+.++...+.+. .|+......+++
T Consensus 85 d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 85 DINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp -HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred cHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 999999999998755 33333 47899999999999999999998887764 344333333333
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.80 E-value=0.00054 Score=52.77 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=106.5
Q ss_pred HHHHHHhhchhhhcchhHHHH----H-hcC-CCc-hhHHHHHHHhhC-CCChHHHHHHhhhhC--------CC----hhH
Q 045917 7 ETLIQLSKTAHHHHQLPALFL----K-TSL-DHN-TYIISRFILTSL-PISLHFTRSLFNNVM--------PP----LFA 66 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~----~-~~~-~~~-~~~~~~ll~~~~-~~~~~~a~~~~~~m~--------~~----~~~ 66 (162)
..++.+.|++.+|+...+... + .+. .|. ....+.+...++ .+++++|..+++..- ++ .-+
T Consensus 290 a~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 290 AVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 344556678887766544332 2 121 122 234566666777 999999999888553 22 456
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHc---C---CCCC-CccHHHHHHHhhhhccchhhhHHHHHH----HHHhc-Ccc-
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDEMLKT---G---LRPD-NLTYPFVVKASDQCLLIGVGGSVHSLI----FKVGL-HSD- 133 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~---~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~----~~~~~-~~~- 133 (162)
++.|=..|.+.|++++|.++|++..+. + ..+. -..++.|-..|.+.+..++|.++|..- +..|. .|+
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 888999999999999999999996432 1 1222 334567788888999999898887653 33443 233
Q ss_pred hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 134 KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 134 ~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+|..|...|.+.|++|+|.++.+.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 67899999999999999999988653
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.76 E-value=0.0037 Score=45.18 Aligned_cols=80 Identities=9% Similarity=-0.119 Sum_probs=44.1
Q ss_pred HhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHH
Q 045917 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
..|+.++|...+....+.. +.++..|+.+-..+. .|++++|...|+... | +..+|..+-..+...|++++|.+.
T Consensus 76 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 76 SLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3355555655555554432 223455555555555 666666666666554 3 244555555555556666666666
Q ss_pred HHHHHH
Q 045917 87 FDEMLK 92 (162)
Q Consensus 87 ~~~m~~ 92 (162)
|+.-.+
T Consensus 155 ~~~al~ 160 (296)
T PRK11189 155 LLAFYQ 160 (296)
T ss_pred HHHHHH
Confidence 655443
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.74 E-value=0.003 Score=43.81 Aligned_cols=147 Identities=9% Similarity=-0.050 Sum_probs=96.8
Q ss_pred HhhchhhhcchhHHHHHhcCC-C-chhHHHHHHHhhC-CCChHHHHHHhhhhC---CChh----HHHHHHHHHHcC----
Q 045917 12 LSKTAHHHHQLPALFLKTSLD-H-NTYIISRFILTSL-PISLHFTRSLFNNVM---PPLF----AYNTLIRAYAKT---- 77 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~----~~~~li~~~~~~---- 77 (162)
..|++++|...++.+...... | ....+..+-..+. .|++++|...++... |+.. ++..+-..+...
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 446777787777777554321 1 1234555666677 999999999999885 4322 233333333332
Q ss_pred ----CCchHHHHHHHHHHHcCCCCCCc-cHH-----------------HHHHHhhhhccchhhhHHHHHHHHHhc--Ccc
Q 045917 78 ----SCSIESIKLFDEMLKTGLRPDNL-TYP-----------------FVVKASDQCLLIGVGGSVHSLIFKVGL--HSD 133 (162)
Q Consensus 78 ----~~~~~a~~~~~~m~~~~~~p~~~-t~~-----------------~li~~~~~~~~~~~a~~i~~~~~~~~~--~~~ 133 (162)
|+.++|...|++..+. .|+.. .+. .+...+.+.|+..+|...+....+... +..
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 6788899999888654 23322 111 234556677899999998888876531 223
Q ss_pred hhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 134 KYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 134 ~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
...+..+...|.+.|+.++|...++.+
T Consensus 203 ~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 203 EEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567889999999999999999988764
No 64
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.73 E-value=0.00028 Score=48.07 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCchhHHHHHHHhhC------CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcC----------------CCchHHH
Q 045917 32 DHNTYIISRFILTSL------PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKT----------------SCSIESI 84 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~------~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~----------------~~~~~a~ 84 (162)
..+..+|..+++.|. .|..+-....++.|. .|..+|+.|+..+.+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 345555666666555 233444444444443 5666666666666542 2346688
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhcc-chhhhHHHHHHHHHh
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLL-IGVGGSVHSLIFKVG 129 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-~~~a~~i~~~~~~~~ 129 (162)
+++++|.+.|+-||..|+..+++.+++.+. +.+.+++.-+|.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk 169 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFK 169 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998775 677888888887753
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.73 E-value=0.0007 Score=43.56 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=82.6
Q ss_pred HHHHHHHhhCCCChHHHHHHhhhhC---CCh-hHHHH---HHHHHHcCCCchHHHHHHHHHHHcCCCCCCc--cHHHHHH
Q 045917 37 IISRFILTSLPISLHFTRSLFNNVM---PPL-FAYNT---LIRAYAKTSCSIESIKLFDEMLKTGLRPDNL--TYPFVVK 107 (162)
Q Consensus 37 ~~~~ll~~~~~~~~~~a~~~~~~m~---~~~-~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~li~ 107 (162)
.|..++..+..++...+...++.+. |+. +..-+ +-..+...|++++|...|++.....-.|+.. ..-.+..
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3445555444677777777777776 433 22222 3366777899999999999998876333322 2333567
Q ss_pred HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+...|++++|...+.......+ ....+...=+.|.+.|+.++|...|++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77788999999998876544433 345666777899999999999998864
No 66
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.72 E-value=0.00061 Score=42.97 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=66.4
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
...+-..+. .|+.++|...|+... .+...|..+-..+.+.|++++|...+++....+ +.+...+..+-..+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 334444555 888888888888765 356677777777778888888888888765543 33455566666777788
Q ss_pred ccchhhhHHHHHHHHHhcCcchhH
Q 045917 113 LLIGVGGSVHSLIFKVGLHSDKYI 136 (162)
Q Consensus 113 ~~~~~a~~i~~~~~~~~~~~~~~~ 136 (162)
|+.++|...+....+.. |+...
T Consensus 99 g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 99 GEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred CCHHHHHHHHHHHHHhc--cccch
Confidence 88888888887777653 44444
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0028 Score=44.21 Aligned_cols=111 Identities=9% Similarity=-0.014 Sum_probs=92.8
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.|+-+....+..... .|...-++......+.|++..|...+++..+. -++|...|+.+--+|.+.|++++|+.-+
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay 157 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAY 157 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHH
Confidence 677777777666644 56667777899999999999999999998653 5678999999999999999999999999
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+..+... -++...+.|--.|.-.|+.++|..++.+
T Consensus 158 ~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 158 RQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred HHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 99888643 4578889999999999999999998753
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.69 E-value=0.0017 Score=41.78 Aligned_cols=104 Identities=6% Similarity=-0.166 Sum_probs=79.0
Q ss_pred HHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc
Q 045917 54 RSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132 (162)
Q Consensus 54 ~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~ 132 (162)
+.+|+... .++..+...-..+...|++++|...|+...... +.+...+..+-..+.+.|++++|...+....+.. +.
T Consensus 13 ~~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-AS 90 (144)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 34455444 222234455667788899999999999986542 2356667788888999999999999999988764 45
Q ss_pred chhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 133 DKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 133 ~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+...+..+-.+|...|+.++|...|++
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888888999999999999988865
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.67 E-value=0.0076 Score=44.54 Aligned_cols=58 Identities=14% Similarity=0.014 Sum_probs=50.3
Q ss_pred ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
-.+.+|=.-|.+.+.+.+|.+.++...+. .|+..+|+-+-++|.+.|+..+|.+++++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 56677778888999999999999966554 68999999999999999999999998765
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00049 Score=39.43 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+....+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445566667788888888888876542 1222456666777777788888888887776653 2344677777788888
Q ss_pred cCChhHHHHhhcc
Q 045917 147 CKEIDFAKALFDE 159 (162)
Q Consensus 147 ~g~~~~a~~~~~~ 159 (162)
.|+.+.|...+.+
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 8888888877754
No 71
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.65 E-value=0.00077 Score=50.44 Aligned_cols=117 Identities=9% Similarity=-0.019 Sum_probs=92.4
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCC
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTS 78 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~ 78 (162)
.+++.++...++.+.|..+++.+.+.. |+ ....+.+.+. .++-.+|.+++++.- | +....+.-...+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 456677777789999999999998776 33 3455667777 778888888888765 3 5666666677788999
Q ss_pred CchHHHHHHHHHHHcCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 79 CSIESIKLFDEMLKTGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
+.+.|+.+.++..+ ..|+.. +|..|.++|.+.|+++.|......+.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999876 456554 89999999999999999988776654
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.65 E-value=0.0015 Score=44.43 Aligned_cols=95 Identities=9% Similarity=-0.040 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHh-hhhcc--chhhhHHHHHHHHHhcCcchhHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKAS-DQCLL--IGVGGSVHSLIFKVGLHSDKYIGN 138 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~-~~~~~--~~~a~~i~~~~~~~~~~~~~~~~~ 138 (162)
|...|..+-..|...|++++|...|++..+. .| |...+..+-.++ ...|+ .++|.++++...+... -+...+.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~ 148 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALM 148 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHH
Confidence 4445555555555555555555555554432 22 222233333332 33333 2555555555554432 2344445
Q ss_pred HHHHHHHhcCChhHHHHhhccc
Q 045917 139 TLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 139 ~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+-..+.+.|++++|...|+++
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555543
No 73
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00095 Score=50.24 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=99.3
Q ss_pred HHhhchhhhcchhHHHHHhcC-CC-chhHHHHHHH-------------------------------hhC-CCChHHHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSL-DH-NTYIISRFIL-------------------------------TSL-PISLHFTRSL 56 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ll~-------------------------------~~~-~~~~~~a~~~ 56 (162)
....++++|+++|+.+++... .. |-.+|+.++- .|+ .++.++|...
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 334588889999988887642 11 3344433332 344 5667777777
Q ss_pred hhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc
Q 045917 57 FNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132 (162)
Q Consensus 57 ~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~ 132 (162)
|+..- | ....|+.|=.-|....+.+.|.+-|+...+- .+.|...|-.|=++|.-.+...-|.-.++...... +-
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-Pn 430 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PN 430 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CC
Confidence 77665 3 4566777777788888888888888877543 23466666667777777777777777776666542 34
Q ss_pred chhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 133 DKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 133 ~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
|...|.+|=++|.+.+++++|.+.|.
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHH
Confidence 67888888888888888888887764
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.61 E-value=0.0025 Score=49.23 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=107.3
Q ss_pred HHHHHHHhhchhhhcchhHHHHHh---cCCCchhHHHHHH----HhhC-CCChHHHHHHhhhhC--------C----Chh
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKT---SLDHNTYIISRFI----LTSL-PISLHFTRSLFNNVM--------P----PLF 65 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll----~~~~-~~~~~~a~~~~~~m~--------~----~~~ 65 (162)
+...+...|+++.|.+++++..+. +...+......++ ..|. .+++++|..+|+++- + -..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 556667778999999888777543 1113333333333 3555 899999999999874 2 255
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHH---c--CC-CCCCcc-HHHHHHHhhhhccchhhhHHHHHHHHH-----hc-C-
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLK---T--GL-RPDNLT-YPFVVKASDQCLLIGVGGSVHSLIFKV-----GL-H- 131 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~--~~-~p~~~t-~~~li~~~~~~~~~~~a~~i~~~~~~~-----~~-~- 131 (162)
+++.|=.+|.+.|++++|...+++..+ . |. .|...+ ++.+...|+..+++++|..++....+- |. .
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 677777789999999999998877422 2 11 122222 456677888889999999888765431 21 1
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 132 SDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 132 ~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.-..+++.|=..|-+.|++++|+++|.+.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 22567899999999999999999998763
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0036 Score=45.26 Aligned_cols=156 Identities=11% Similarity=0.070 Sum_probs=89.1
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhc-CCCch--hHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHc
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTS-LDHNT--YIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAK 76 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~ 76 (162)
|+=+++.+-|..+.|.++++-+..+. .+-.. ...-.|=+=|- .|-++.|+.+|.... .-...-.-++..|-+
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 45566677777788888887765432 22111 11122223344 677888888887776 224455667777777
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCcc----HHHHH----------------------------------HHhhhhccchhh
Q 045917 77 TSCSIESIKLFDEMLKTGLRPDNLT----YPFVV----------------------------------KASDQCLLIGVG 118 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~p~~~t----~~~li----------------------------------~~~~~~~~~~~a 118 (162)
..++++|.++-.++...+-.+...- |.-|. +.....|+++.|
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~A 233 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKA 233 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHH
Confidence 7788887777776655433322111 11111 222223555555
Q ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 119 ~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+.++.+.+.+..--..+...|..+|...|+.++....+.++
T Consensus 234 V~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 234 VEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555555555443333456677888888888888777665543
No 76
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.56 E-value=0.0022 Score=48.41 Aligned_cols=122 Identities=15% Similarity=0.009 Sum_probs=95.3
Q ss_pred hhHHHHHHHhhCCCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-CccHHHHHHHh
Q 045917 35 TYIISRFILTSLPISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFVVKAS 109 (162)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~ 109 (162)
+.-|..-+..|-.|++++|+..++... | |.+-+......+.+.++.++|.+.++.+.. ..|+ ..-.-.+-+++
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~al 384 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Confidence 344555555555788999999988876 5 566677778888999999999999999876 4566 44456677899
Q ss_pred hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+.|+..++..+........ +-|+..|..|-.+|...|+..+|....-|
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 99999999988887776654 45789999999999999998888765443
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.0001 Score=42.85 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=58.3
Q ss_pred CCCchHHHHHHHHHHHcCC-CCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHH
Q 045917 77 TSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
.|+++.|+.+++++.+..- .|+...+-.+..++.+.|++++|..+++. .+.+. .+....-.+-.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788999999999877544 23444555578999999999999999988 33332 233444455788999999999999
Q ss_pred hhcc
Q 045917 156 LFDE 159 (162)
Q Consensus 156 ~~~~ 159 (162)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 78
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.54 E-value=0.0016 Score=50.99 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=82.4
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
..|--.|. .|.++.|...|++.- | ....||.|-+++-..|++.+|.+.|.+-... ..--..+.+.|-+.+...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhc
Confidence 33333455 777888888877765 3 3667888888888888888888888877653 2223445677778888888
Q ss_pred cchhhhHHHHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 114 LIGVGGSVHSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 114 ~~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+++|..++...... -|. ...++.|-..|-..|++++|...+++
T Consensus 369 ~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 369 KIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred cchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 888888887766553 233 45567777788888888888776654
No 79
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.0019 Score=47.11 Aligned_cols=106 Identities=14% Similarity=0.007 Sum_probs=85.1
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccc
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~ 115 (162)
.+..+..+. .|+...|.++-++.. |+..-|-..|.+++..+++++-..+-.. +-++.-|-.+++.|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455556 899999999999999 9999999999999999999987776432 23457899999999999998
Q ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 116 ~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+|..+... ..+..-+..|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888877655 2236677999999999999776433
No 80
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.00034 Score=54.31 Aligned_cols=122 Identities=15% Similarity=0.043 Sum_probs=83.4
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHH-
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV- 106 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li- 106 (162)
-.|.+|.++=++|+ .++.+.|.+.|+... | ..++|+.+=.-+....++++|+.-|+.- +..|...|+++.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHh
Confidence 34677888888888 888888888888776 4 5677776666666667777777777655 335666666643
Q ss_pred --HHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 107 --KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 107 --~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
-.|.+.+.++.|+-.|+...+-+ +.+.+....+-..|-+.|+.|+|.+++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 45667777777777776666543 23455556666677777777777777764
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.50 E-value=0.0035 Score=45.30 Aligned_cols=120 Identities=15% Similarity=0.011 Sum_probs=89.3
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-CccHHHHHHHh
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFVVKAS 109 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~ 109 (162)
..|..+=..|. .|+.++|...|+... | +...|+.+=..+...|++++|...|++..+ +.|+ ..++..+-..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 33555555666 999999999998876 4 578899999999999999999999999876 4454 45566777778
Q ss_pred hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
...|++++|.+.++...+.. |+..........+...++.++|...|++
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88999999999999888753 4332222222334457788999888754
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.46 E-value=0.0034 Score=39.52 Aligned_cols=94 Identities=13% Similarity=-0.057 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~ 143 (162)
......+...+...|+.++|.+.|+.....+ +.+...+..+-..+.+.|++++|..++....+.+ +.+...+..+-.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445556667777889999999988876643 3355666777778888888999988888877654 3456777777788
Q ss_pred HHhcCChhHHHHhhcc
Q 045917 144 YAACKEIDFAKALFDE 159 (162)
Q Consensus 144 y~~~g~~~~a~~~~~~ 159 (162)
|...|+.++|.+.|++
T Consensus 95 ~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 95 LLALGEPESALKALDL 110 (135)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 8889999999888765
No 83
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.00098 Score=47.77 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=81.5
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC-C-----ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHH
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM-P-----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 108 (162)
.+|..+++..- .+.++.|..+|++.. . ..+...+.|. |...++.+.|..+|+..... +..+..-|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 46777777766 666888888888876 2 2222333332 22346666688888887654 55566667788888
Q ss_pred hhhhccchhhhHHHHHHHHHhcCcc---hhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 109 SDQCLLIGVGGSVHSLIFKVGLHSD---KYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 109 ~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+.+.++.+.++.+|+..... +.++ ..+|...++.=.+.|+++.+.++.+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888887654 3222 257888888888888888888887665
No 84
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.38 E-value=0.0058 Score=51.75 Aligned_cols=120 Identities=8% Similarity=0.041 Sum_probs=67.4
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC---CccHHHHHHHh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD---NLTYPFVVKAS 109 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~~ 109 (162)
|..|...|. ..+.++|-++++.|- -....|......+.++++-+.|..++.+.... .|- ..-..-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 444445555 555555555555554 13444555555555555555555555443321 122 11122223333
Q ss_pred hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+.|+.+.++.+|+..... .+.....|+.+++.=.+.|+.+.++.+|++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4556666666676666654 2345677888888888899988888888753
No 85
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.33 E-value=0.0024 Score=40.19 Aligned_cols=47 Identities=13% Similarity=-0.057 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHhhhhccchhhhHHHHHHHH-HhcCcchhHHHHHHH
Q 045917 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK-VGLHSDKYIGNTLLR 142 (162)
Q Consensus 96 ~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~ll~ 142 (162)
.|+..+..+++.+++..+++..|.++.+.+.+ -+++.+..+|..|++
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35555555666666666666666666655543 344445556666555
No 86
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.005 Score=43.34 Aligned_cols=131 Identities=11% Similarity=-0.079 Sum_probs=57.1
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 99 (162)
+.+++.......+......-...|. .+++++|.+...... ......|.- .+.+..+.+-|..-++.|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~Vq--I~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQ--ILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3444444433333322223333444 677777777666533 222222221 123333444455555555432 223
Q ss_pred ccHHHHHHHhhh----hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 100 LTYPFVVKASDQ----CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 100 ~t~~~li~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.|.+-|.++..+ .+.+.+|.-+|+++..+ ..|++.+.+....+....|++++|..+++
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 333333333222 23344555555555442 34555555555555555555555555443
No 87
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.31 E-value=0.016 Score=39.42 Aligned_cols=104 Identities=7% Similarity=-0.014 Sum_probs=81.2
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHH-HHcCCC--chHHHHHHHHHHHcCCCCCCccHH
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRA-YAKTSC--SIESIKLFDEMLKTGLRPDNLTYP 103 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~-~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~ 103 (162)
+.++..|..+-..|. .|++++|...|+... | +...+..+-.+ +...|+ .++|..++++..+.+-. +...+.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~ 148 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALM 148 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHH
Confidence 456777888888888 999999999999887 4 56667666665 466677 59999999998774332 556677
Q ss_pred HHHHHhhhhccchhhhHHHHHHHHHhcCcchhHH
Q 045917 104 FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137 (162)
Q Consensus 104 ~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 137 (162)
.+-..+.+.|++++|...++.+.+.. .|+..-+
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 88888899999999999999998875 4555444
No 88
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.31 E-value=0.0056 Score=37.31 Aligned_cols=90 Identities=13% Similarity=-0.052 Sum_probs=52.7
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC--CCCccHHHHHHH
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR--PDNLTYPFVVKA 108 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~t~~~li~~ 108 (162)
-.+...+. .|++++|...|+.+. |+ ...+-.+-..+.+.|++++|...|++.....-. .....+..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444 677777777776664 33 234445666666777777777777776543211 112345555566
Q ss_pred hhhhccchhhhHHHHHHHHH
Q 045917 109 SDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 109 ~~~~~~~~~a~~i~~~~~~~ 128 (162)
+.+.|+.++|...+..+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66667777777777766665
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.28 E-value=0.015 Score=42.74 Aligned_cols=144 Identities=8% Similarity=-0.004 Sum_probs=87.1
Q ss_pred hhchhhhcchhHHHHH-hcCCCchhHHHHHHHhhC--CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHc----CCCch
Q 045917 13 SKTAHHHHQLPALFLK-TSLDHNTYIISRFILTSL--PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAK----TSCSI 81 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~--~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~----~~~~~ 81 (162)
.++.+.+...+....+ ....+++.....+-.... .|++++|...++... |+ ...++. ...+.. .+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~ 97 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRD 97 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCch
Confidence 3455555555544433 222334333322222222 899999999998865 43 334442 222222 44555
Q ss_pred HHHHHHHHHHHcCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 82 ESIKLFDEMLKTGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+...+.. .....|+.. ....+-..+...|++++|...++...+.. +.+...+..+-..|...|++++|.+.+++-
T Consensus 98 ~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 98 HVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred hHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 55555443 122223322 22334457778899999999999998865 345677888899999999999999998753
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.27 E-value=0.019 Score=46.34 Aligned_cols=133 Identities=5% Similarity=-0.113 Sum_probs=97.8
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCch-hHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCC
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNT-YIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTS 78 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~ 78 (162)
-+..+....|+.++|+.+++..... .|+. .....+...+. .+++++|...++..- |+ ....+.+=.++.+.|
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence 3556677788999999998887654 4543 33444555555 999999999999886 54 555666677788899
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll 141 (162)
++++|.++|++... ...-+..++..+-..+-..|+.++|...|+.....- .+...-|+.++
T Consensus 169 ~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 169 QSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred chHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 99999999999987 222336677888888889999999999998887643 23445544433
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.25 E-value=0.006 Score=45.04 Aligned_cols=126 Identities=14% Similarity=0.047 Sum_probs=91.9
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhCCCC----hHHHHHHhhhhCCChhHHHHHHHHHHcCC
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPIS----LHFTRSLFNNVMPPLFAYNTLIRAYAKTS 78 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~a~~~~~~m~~~~~~~~~li~~~~~~~ 78 (162)
..+++.-+-.||+-++|.++..+..+.+..|.- ..++...-.++ ...++...+..+-++-.+.++=..|.+++
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~ 342 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK 342 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence 346677778888889999998888888888772 22222222233 33344444444434567888888899999
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD 133 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~ 133 (162)
.+.+|...|+. .-...|+..+|+.+-.++.+.|+..+|.++.++....-.+|+
T Consensus 343 ~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 343 LWGKASEALEA--ALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999999994 345779999999999999999999999999888765433443
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.25 E-value=0.011 Score=46.56 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=106.7
Q ss_pred HHHHHHhhchhhhcchhHHHH-HhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHH
Q 045917 7 ETLIQLSKTAHHHHQLPALFL-KTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a 83 (162)
..++-..|++...+..|+..+ ...+....-+|...+.... .+.++-+.++++..- .++..-+..|.-+++.+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 344455566666666666654 3444555566777777777 888889999999887 5666688899999999999999
Q ss_pred HHHHHHHHHc------CCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc--Ccc--hhHHHHHHHHHHhcCChhHH
Q 045917 84 IKLFDEMLKT------GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--HSD--KYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 84 ~~~~~~m~~~------~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~--~~~--~~~~~~ll~~y~~~g~~~~a 153 (162)
-+.+...++. ..+.+...|.-+-+-..+..+.-....+ +.+.+.|+ -+| -..|++|-+-|.+.|++|+|
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999887554 3456677777776666665544333332 33333333 344 46789999999999999999
Q ss_pred HHhhcc
Q 045917 154 KALFDE 159 (162)
Q Consensus 154 ~~~~~~ 159 (162)
..+|++
T Consensus 268 rDvyee 273 (835)
T KOG2047|consen 268 RDVYEE 273 (835)
T ss_pred HHHHHH
Confidence 999875
No 93
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.18 E-value=0.0064 Score=38.23 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=63.6
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhh--------------C------CChhHHHHHHHHHHcCCCchHHHHHHHHHH-H
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNV--------------M------PPLFAYNTLIRAYAKTSCSIESIKLFDEML-K 92 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m--------------~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~ 92 (162)
..++.++|.+++ .|+++....+.+.. . |+..+-.+++.+|+.+|++..|+++.+... .
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345566666666 66666666665532 1 889999999999999999999999999965 4
Q ss_pred cCCCCCCccHHHHHHHhhhhccch
Q 045917 93 TGLRPDNLTYPFVVKASDQCLLIG 116 (162)
Q Consensus 93 ~~~~p~~~t~~~li~~~~~~~~~~ 116 (162)
-+++.+...|..|++.+...-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s~~~ 105 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLSSKR 105 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCc
Confidence 588888999999999887665543
No 94
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.029 Score=40.77 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=84.8
Q ss_pred chhhhcchhHHHHHhcCCCchh-HHHHHHHhhC-CCChHHHHHHhhhhC--CCh------hHHHHHHHHHHcCCCchHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTY-IISRFILTSL-PISLHFTRSLFNNVM--PPL------FAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~------~~~~~li~~~~~~~~~~~a~ 84 (162)
..+.|.+.|..|.+. .|.+. +--+|=+.|- .|..+.|.++.+..- ||. ..--.+=.-|...|-++.|.
T Consensus 50 Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 50 QPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred CcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 455677777777652 22222 2233444455 888888888888776 542 22333445566678888888
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcch----hHHHHHHHHHHhcCChhHHHHhhc
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK----YIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~----~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++|..+.+.+. .-...--.|+..|-..++|++|..+-+.+.+.+-++.. ..|.-|-..+....+++.|..++.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 88888866432 11223455778888888888888888777776543332 123444444445566666665543
No 95
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.15 E-value=0.0043 Score=35.31 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=58.6
Q ss_pred HHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc
Q 045917 40 RFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114 (162)
Q Consensus 40 ~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 114 (162)
.+-..+. .|++++|...++... | +...+..+-..+...+++++|.+.+++..+.. +.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444555 778888888887764 3 33566667777777788888888888766543 2233456667777777788
Q ss_pred chhhhHHHHHHHH
Q 045917 115 IGVGGSVHSLIFK 127 (162)
Q Consensus 115 ~~~a~~i~~~~~~ 127 (162)
.+.|...+....+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 8887777766544
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.13 E-value=0.018 Score=35.05 Aligned_cols=89 Identities=13% Similarity=-0.035 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCC----CccHHHHHHHhhhhccchhhhHHHHHHHHHhcC--cchhHHHHHHH
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPD----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH--SDKYIGNTLLR 142 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~ll~ 142 (162)
.....+.+.|++++|...|.+..+.. |+ ......+...+.+.|+++.|...+..+...... .....+..+-.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555666666666666665431 22 123444556666666666666666666553211 11344555556
Q ss_pred HHHhcCChhHHHHhhcc
Q 045917 143 MYAACKEIDFAKALFDE 159 (162)
Q Consensus 143 ~y~~~g~~~~a~~~~~~ 159 (162)
+|.+.|+.++|.+.+++
T Consensus 85 ~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHhCChHHHHHHHHH
Confidence 66666666666666654
No 97
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.0026 Score=49.64 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=93.9
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---------------------------------
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--------------------------------- 61 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--------------------------------- 61 (162)
.++|...|.. ...-+.-+......+=.+|. .+++++|+++|+..+
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555 22223333455566667777 888888888888653
Q ss_pred -----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchh
Q 045917 62 -----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY 135 (162)
Q Consensus 62 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 135 (162)
-.+.+|.++=++|.-.++.+.|++.|+.-.+ +.| ..++|+.+=.-+....+++.|...|+... ..|+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~r 487 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPR 487 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCch
Confidence 2467788888888888888888888887755 555 56677666666666677888877776654 34556
Q ss_pred HHHH---HHHHHHhcCChhHHHHhhcc
Q 045917 136 IGNT---LLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 136 ~~~~---ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|+. |=-.|.|.++++.|+--|++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHh
Confidence 6655 44578899999999877764
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.12 E-value=0.033 Score=38.54 Aligned_cols=122 Identities=15% Similarity=0.058 Sum_probs=83.8
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---CCh----hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc----c
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---PPL----FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL----T 101 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t 101 (162)
.+..+-.+-..+. .|+++.|...|++.. |+. .++..+-.++.+.|++++|...+++..+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 3445555556666 999999999999876 542 356777788899999999999999997642 3322 2
Q ss_pred HHHHHHHhhhh--------ccchhhhHHHHHHHHHhcCcc-hhHH-----------------HHHHHHHHhcCChhHHHH
Q 045917 102 YPFVVKASDQC--------LLIGVGGSVHSLIFKVGLHSD-KYIG-----------------NTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 102 ~~~li~~~~~~--------~~~~~a~~i~~~~~~~~~~~~-~~~~-----------------~~ll~~y~~~g~~~~a~~ 155 (162)
+..+-..+... |+.++|.+.+..+.+.. |+ ...+ ..+-..|.+.|++++|..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33333333332 67888888888887653 32 2222 134456788999999998
Q ss_pred hhcc
Q 045917 156 LFDE 159 (162)
Q Consensus 156 ~~~~ 159 (162)
.+++
T Consensus 188 ~~~~ 191 (235)
T TIGR03302 188 RFET 191 (235)
T ss_pred HHHH
Confidence 8765
No 99
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.017 Score=44.10 Aligned_cols=139 Identities=11% Similarity=0.145 Sum_probs=87.3
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CCh-hHHHHHHHHHHcCCCchHHHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPL-FAYNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
+...|+++|...+.-. .-+...|---..+=. ++.+.+|..+|+... |.+ ..|=-.+..=-..|++..|..+|..
T Consensus 88 e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4445667776665443 222333333333333 677778888887765 322 2232333333334777777777776
Q ss_pred HHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 90 m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
-.. ..|+...|.+.|+.-.+-+.++.|..+++...-. .|++..|-...+.=-++|+++.|.+||+
T Consensus 167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 533 5678888888888777777788888877776643 5777777777777777777777777765
No 100
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.08 E-value=0.0046 Score=44.08 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=79.2
Q ss_pred ChHHHHHHhhhhC---CChhHHHHHHHHHHcC-----CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccc-----
Q 045917 49 SLHFTRSLFNNVM---PPLFAYNTLIRAYAKT-----SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI----- 115 (162)
Q Consensus 49 ~~~~a~~~~~~m~---~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~----- 115 (162)
.+-..+..|...+ .|-.+|-+.+.-+..+ +.++-....++.|++-|++.|..+|+.|++.+-+..-.
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 3445667777776 6777777777777653 66777777888899999999999999999988775322
Q ss_pred -----------hhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 116 -----------GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 116 -----------~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
+=+.++.++|...|+.||..+-..|+++|.+.|-.
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23456889999999999999999999999876643
No 101
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.014 Score=42.53 Aligned_cols=141 Identities=9% Similarity=-0.068 Sum_probs=95.9
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHH-HHHHHHHcCCCchHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYN-TLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~-~li~~~~~~~~~~~a~~~~~ 88 (162)
|-..+|+.-++.-+. ..|-+.||-.|-+.|. ..+...|..+|.+-. |.-+||- -+-+.+-..++.++|.++|+
T Consensus 237 gm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred cChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 344455544444333 3456677888888888 889999999988765 6555543 34455556688888888888
Q ss_pred HHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
...+. -..|+....++-.+|.-.++.+-|..+++.+.+.|+. ++..|+.+=-++.-.+++|.+.--|.
T Consensus 315 ~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 315 LVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 87543 2235555666667777788888999999999888874 56666666666666666666655443
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.012 Score=41.54 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=67.9
Q ss_pred CCChHHHHHHhhhhC--CChhHHHHHHHH----HHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhH
Q 045917 47 PISLHFTRSLFNNVM--PPLFAYNTLIRA----YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGS 120 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~--~~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~ 120 (162)
..+++.|.+.++.|. .+-.+.+-+-.+ ..-.++..+|.=+|++|-+ ...|++.+-+-....+...|++++|+.
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 578899999999998 444555544444 4445778999999999954 377888888888888889999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHH
Q 045917 121 VHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~ll 141 (162)
+.+....+.. .++.+...++
T Consensus 229 lL~eaL~kd~-~dpetL~Nli 248 (299)
T KOG3081|consen 229 LLEEALDKDA-KDPETLANLI 248 (299)
T ss_pred HHHHHHhccC-CCHHHHHHHH
Confidence 9988876643 2444443333
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.00 E-value=0.023 Score=43.92 Aligned_cols=122 Identities=7% Similarity=0.014 Sum_probs=89.9
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCC-chhHHHHHHHhhCCCChHHHHHHhhhhC---CChhH-HHHHHHHHHcCCC
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDH-NTYIISRFILTSLPISLHFTRSLFNNVM---PPLFA-YNTLIRAYAKTSC 79 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~a~~~~~~m~---~~~~~-~~~li~~~~~~~~ 79 (162)
.++..+.+...++.|+.+|...++.+..+ .+.+++++|..||.++..-|.++|+-=- +|... -...+.-+.+.++
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence 45566666677888888888888777665 7888888888888888888888887432 44333 3455666667778
Q ss_pred chHHHHHHHHHHHcCCCCC--CccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 80 SIESIKLFDEMLKTGLRPD--NLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
=..+..+|+.....++.|+ ...|..+|+.-...|++..+.++-+.+.
T Consensus 451 d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 451 DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888888887766554 4668888888888888888877765553
No 104
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.0065 Score=46.04 Aligned_cols=143 Identities=9% Similarity=0.006 Sum_probs=80.7
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
|+++.|.+.|++.+...-.-....||+=+..=..|++++|...|=.++ .+....--+-+.|-...++..|.+++.+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 455666666666544333222233332221111666777776666555 3444444445555555666666666544
Q ss_pred HHHcCCCC-CCccHHHHHHHhhhhccchhhhH----------------------------------HHHHHHHHhcCcch
Q 045917 90 MLKTGLRP-DNLTYPFVVKASDQCLLIGVGGS----------------------------------VHSLIFKVGLHSDK 134 (162)
Q Consensus 90 m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~----------------------------------i~~~~~~~~~~~~~ 134 (162)
. ..+.| |....+-|-+-|-+.|+-+.|.+ +|+.. .-++|+.
T Consensus 584 ~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~ 659 (840)
T KOG2003|consen 584 A--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQ 659 (840)
T ss_pred h--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccH
Confidence 3 23333 34444555566666665555543 22221 2258999
Q ss_pred hHHHHHHH-HHHhcCChhHHHHhhccc
Q 045917 135 YIGNTLLR-MYAACKEIDFAKALFDEM 160 (162)
Q Consensus 135 ~~~~~ll~-~y~~~g~~~~a~~~~~~m 160 (162)
.-|.-++. ++.+.|++.+|..++..+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99998876 556799999999988754
No 105
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.055 Score=41.26 Aligned_cols=117 Identities=12% Similarity=0.065 Sum_probs=85.0
Q ss_pred CCCchhHHHHHHHhhC-CCChHHHHHHh-hhhC--C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHH
Q 045917 31 LDHNTYIISRFILTSL-PISLHFTRSLF-NNVM--P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105 (162)
Q Consensus 31 ~~~~~~~~~~ll~~~~-~~~~~~a~~~~-~~m~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 105 (162)
++.|+.+.+-|-..|- .|+-..|+..+ +... | +..+..=+-.-|....-++++...|... .=+.|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHH
Confidence 4557888888888888 88888887753 3333 3 4444444445556666778888887764 3367999999998
Q ss_pred HHHhh-hhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 106 VKASD-QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 106 i~~~~-~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
|.+|. +.|++.+|..++.++.+. ++-|......|++.....|.-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 87776 468999999999888765 666788888888887766654
No 106
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.90 E-value=0.0037 Score=34.38 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=27.5
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
..|++++|.+.|++..+..- -|......+...+.+.|++++|..++..+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566666666666544311 13333444556666666666666666555544
No 107
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.0032 Score=40.38 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
....++..+...|++++|..+.+...... +.|...|..+|.++...|+...|.+++..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444555555555555555554321 123344555555555555555555555443
No 108
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.0051 Score=44.71 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=97.6
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccH-HHHHHHhhhhc
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY-PFVVKASDQCL 113 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~li~~~~~~~ 113 (162)
+.+=++|. .|.+.+|++.|+.-- |-+.||-.+-..|.+..++..|+.+|.+-.+ .-|-.+|| .-..+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 66677777 999999999998765 7777889999999999999999999998765 34655665 44567777788
Q ss_pred cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 114 ~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+.+++.++++...+.. ..++...-++-..|.-.|+.|.|++.++++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 9999999999988764 356777778888899999999999988765
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.84 E-value=0.027 Score=37.04 Aligned_cols=92 Identities=10% Similarity=-0.039 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC--CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD--NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
..|..+...+...|++++|+..|++.......|. ..++..+-..+...|+.++|...+....+.. +.....+..+-.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3344444555555666666666655543321111 1244455555555666666666655554431 112233444444
Q ss_pred HHH-------hcCChhHHHHhh
Q 045917 143 MYA-------ACKEIDFAKALF 157 (162)
Q Consensus 143 ~y~-------~~g~~~~a~~~~ 157 (162)
.|. +.|+++.|...+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 444 566655444433
No 110
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.03 Score=36.78 Aligned_cols=90 Identities=3% Similarity=-0.095 Sum_probs=63.7
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 105 (162)
....+..+...+. .|++++|...|+... |+ ..+|..+=..+...|++++|.+.++...+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3455666666677 999999999999884 33 3478888888999999999999999987542 2223345555
Q ss_pred HHHhh-------hhccchhhhHHHHH
Q 045917 106 VKASD-------QCLLIGVGGSVHSL 124 (162)
Q Consensus 106 i~~~~-------~~~~~~~a~~i~~~ 124 (162)
...+. ..|+++.|...+..
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 55555 66777766655544
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.81 E-value=0.047 Score=42.62 Aligned_cols=131 Identities=13% Similarity=0.141 Sum_probs=96.6
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-------------------CChhHH--HHHHHHHHcCCC
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-------------------PPLFAY--NTLIRAYAKTSC 79 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-------------------~~~~~~--~~li~~~~~~~~ 79 (162)
....+.+.|+ |.+++.|-..|. ..+..-...++..+. |.+..| .-+-.+|-..|+
T Consensus 133 yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 133 YLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred HHHHHHhcCC---chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 3344444554 445888888888 666666666666542 344344 555677888999
Q ss_pred chHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 80 SIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.++|++.+++-.+. +|+ +.-|.+-.+.+-+.|++.+|....+..++... -|..+=+.....+.++|++++|.+++.
T Consensus 210 ~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 210 YEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999987664 455 33455567788899999999999999988775 488888888999999999999998864
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.79 E-value=0.099 Score=44.90 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=114.0
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHHH-hcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC---hhHHHHHHHHH
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFLK-TSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP---LFAYNTLIRAY 74 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~---~~~~~~li~~~ 74 (162)
.-++..++.+.....+|-++++.|.+ .| .....|....+.+. ..+.+.|.+++++.- |. .....-....=
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 44667777777888999999999964 45 66777999999988 888899999998875 54 22222233333
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHhcCChhH
Q 045917 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD--KYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~ll~~y~~~g~~~~ 152 (162)
.+.|+.+.+..+|......--+ -...|+.+|+.-.+.|+.+.++.+|+.+...++.|. .+.|.-.|..=-..|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 4679999999999998765322 344699999999999999999999999999888665 5667777766666777665
Q ss_pred HHHh
Q 045917 153 AKAL 156 (162)
Q Consensus 153 a~~~ 156 (162)
++.|
T Consensus 1690 vE~V 1693 (1710)
T KOG1070|consen 1690 VEYV 1693 (1710)
T ss_pred HHHH
Confidence 5544
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.71 E-value=0.016 Score=43.08 Aligned_cols=82 Identities=9% Similarity=-0.043 Sum_probs=66.9
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.|+++.|...|++.. .+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.++...|++++|...+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 789999999999886 456778888888899999999999999987642 124556777778888999999999999
Q ss_pred HHHHHHh
Q 045917 123 SLIFKVG 129 (162)
Q Consensus 123 ~~~~~~~ 129 (162)
+...+..
T Consensus 94 ~~al~l~ 100 (356)
T PLN03088 94 EKGASLA 100 (356)
T ss_pred HHHHHhC
Confidence 8888754
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.65 E-value=0.0087 Score=34.55 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=31.2
Q ss_pred CChHHHHHHhhhhC---C---ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhH
Q 045917 48 ISLHFTRSLFNNVM---P---PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGS 120 (162)
Q Consensus 48 ~~~~~a~~~~~~m~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~ 120 (162)
|+++.|..+|+.+. | +...+-.+-.+|.+.|++++|..+++... ..|+ ....-.+-.++.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~---~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK---LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT---HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555555555554 3 12222224455555555555555555511 1111 1222223444555555555555
Q ss_pred HHH
Q 045917 121 VHS 123 (162)
Q Consensus 121 i~~ 123 (162)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.65 E-value=0.052 Score=41.36 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=87.5
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
|..+.|+..++.+.+. .+-|++-.....+.+. .++..+|.+.++.+. |+ ...+-.+=.+|.+.|++.+|..+++
T Consensus 320 ~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 320 GQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred cccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 4667778888775543 5567788888888888 999999999999987 66 5666677788999999999999999
Q ss_pred HHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHH
Q 045917 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~ 124 (162)
.-... .+-|...|..|-++|...|+..++.....+
T Consensus 399 ~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 399 RYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 87643 566888999999999999887777655443
No 116
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.64 E-value=0.042 Score=36.29 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=19.9
Q ss_pred CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 47 PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
.|++++|...|++.. |+ ...|..+-..+.+.|++++|...+++..
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555444432 11 2334444444444445555544444443
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.1 Score=36.78 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=77.5
Q ss_pred chhhhcchhHHHH---Hhc-CCCchhH-HHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHH-HHcCCCchHHH
Q 045917 15 TAHHHHQLPALFL---KTS-LDHNTYI-ISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRA-YAKTSCSIESI 84 (162)
Q Consensus 15 ~~~~a~~~~~~~~---~~~-~~~~~~~-~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~-~~~~~~~~~a~ 84 (162)
+.++..+++..+. +.| ..++..+ |-.++-+.. .|+.+.|...++... |.+.--..+=.. +-..|..++|.
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 4556666665554 233 4444422 333333333 778888888777765 332221111111 23357788888
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHh-hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKAS-DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~-~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
++|+...+.+ +.|.+++--=+-.. +..++.+-.+.+-..+.. +..|...|.-|-+.|...|++++|--.++++
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888887765 33333332211111 122233333333333333 4567888888888888888888887777665
No 118
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.63 E-value=0.051 Score=44.24 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=85.0
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i 121 (162)
.|++++|.+++.++. .+..+|-+|=..|-..|+.++++..+ ++..-+.| |..-|-.+-+-..+.|+++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 899999999999886 56888999999999999988887665 33343444 445577777778888889999988
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+....+.. +++...+..=...|-+.|+...|++-|.+|
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 88888765 355555556667888888888888877654
No 119
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.60 E-value=0.13 Score=35.66 Aligned_cols=111 Identities=8% Similarity=-0.043 Sum_probs=48.7
Q ss_pred CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC-CCCCCccHHHHHHHhhhhccchhhhHH
Q 045917 47 PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~~~~a~~i 121 (162)
.|..+.|.+-|+..- | +-...|..=.-++..|++++|...|++-.+.- ..--+.||..+--+..+.|+.+.|+..
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 82 LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 555555555555443 2 22222332233344455555555555544331 111233444444444455555555555
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+..-.+..- -.....-.+-+...+.|++-.|...++
T Consensus 162 l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 162 LKRALELDP-QFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555444321 113333444444445555555544443
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.54 E-value=0.14 Score=40.11 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=92.6
Q ss_pred CchhHH--HHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHH
Q 045917 33 HNTYII--SRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105 (162)
Q Consensus 33 ~~~~~~--~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 105 (162)
|+...| .-+-..|. .|+.++|....+... |+ +..|-.--..+-+.|++.+|.+.+++-+..+. -|-..=+-.
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~ 268 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKC 268 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHH
Confidence 444334 45556677 999999999999776 55 56677788888999999999999998876432 233333456
Q ss_pred HHHhhhhccchhhhHHHHHHHHHhcCcchhHH--------HHHHHHHHhcCChhHHHHhhcc
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG--------NTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~--------~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
...+.+.|+.++|++++....+.+..|-.... ...-.+|.+.|++..|++-|..
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78888999999999999988776642222221 3455688899999999887754
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.53 E-value=0.028 Score=45.31 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=81.9
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
.+..|..+++-++..+. -+.-|..+-+.|+ .|+++.|+++|-+.. .++-.|..|.+.|++++|.++-.+- .
T Consensus 747 ew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----~~~dai~my~k~~kw~da~kla~e~--~ 818 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----LFKDAIDMYGKAGKWEDAFKLAEEC--H 818 (1636)
T ss_pred hhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----hhHHHHHHHhccccHHHHHHHHHHh--c
Confidence 34455555555544432 2344777888999 999999999998865 5677788999999999999886554 3
Q ss_pred CCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 94 ~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
|-+.....|.+=.+-.-+.|++.+|++++-.+. .|+. -+.+|-+.|..++..++.
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHH
Confidence 444455556555566667778888877653221 2322 235555555555555544
No 122
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.1 Score=39.78 Aligned_cols=142 Identities=12% Similarity=0.089 Sum_probs=111.1
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
+.-+.|...|+..++-+ +-....|+.+=+-|. .++...|..-++... .|-..|=.+=.+|.-.+.+.=|+-.|+
T Consensus 344 ~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 34455666666665543 223466888888888 899999999888776 577888888888888888888888888
Q ss_pred HHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 89 EMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 89 ~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+-.+ ++| |+..|.+|-+.|.+.++.++|.+-+......|- .+...+..|-+.|-+.++..+|.+.|.+
T Consensus 423 kA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 423 KALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8754 555 677889999999999999999999988887653 3557888899999999999999887754
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.38 E-value=0.076 Score=33.11 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=10.4
Q ss_pred HHHHHHcCCCchHHHHHHHHHH
Q 045917 70 LIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~ 91 (162)
+=+.+...|++++|..++++..
T Consensus 44 lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444455555555555443
No 124
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.38 E-value=0.052 Score=39.35 Aligned_cols=140 Identities=10% Similarity=0.115 Sum_probs=92.9
Q ss_pred hhHHHHHHHHhhc-----hhhhcchhHHHHHhcCCCchhHHHHH--HHhhC-C----CChHHHHHHhhhhC--------C
Q 045917 3 SRQIETLIQLSKT-----AHHHHQLPALFLKTSLDHNTYIISRF--ILTSL-P----ISLHFTRSLFNNVM--------P 62 (162)
Q Consensus 3 ~~~~~~~l~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~-~----~~~~~a~~~~~~m~--------~ 62 (162)
+.++...+...+. +++..++++.+++.|+.-+.++|-+. |.... . -.+..|..+|+.|+ +
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 3455666666554 45678899999999999888777653 33332 2 34777889999997 6
Q ss_pred ChhHHHHHHHHHHcCCCc----hHHHHHHHHHHHcCCCCCCc-cHHHHHHHhhhhcc---chhhhHHHHHHHHHhcCcch
Q 045917 63 PLFAYNTLIRAYAKTSCS----IESIKLFDEMLKTGLRPDNL-TYPFVVKASDQCLL---IGVGGSVHSLIFKVGLHSDK 134 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~---~~~a~~i~~~~~~~~~~~~~ 134 (162)
+-+++.+++.. ..+++ +.+...|+.+.+.|+..+.. -+-+-+-+++.... ...+..++..+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 77888888776 33333 45567788888888865433 45555555544333 44677788889999987766
Q ss_pred hHHHHHHHHHH
Q 045917 135 YIGNTLLRMYA 145 (162)
Q Consensus 135 ~~~~~ll~~y~ 145 (162)
..|. ++..++
T Consensus 218 ~~yp-~lGlLa 227 (297)
T PF13170_consen 218 MHYP-TLGLLA 227 (297)
T ss_pred cccc-HHHHHH
Confidence 6654 333444
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.37 E-value=0.11 Score=43.18 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
..-.+-.+|-+.|+.++|..+|++..+.. .-|....|.+...+... ++++|+++......
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 34444555555566666666666665544 33455555566666555 66666655554443
No 126
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.076 Score=40.76 Aligned_cols=141 Identities=13% Similarity=0.026 Sum_probs=95.1
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC------CChhHHHHHHHHHHcCCCchHHHH
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM------PPLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
+|+...|++-++...+....++.. |--+-..|. ..+.++.+..|+... ||++-.-. ..+.-.+++++|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg--Qm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG--QMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH--HHHHHHHHHHHHHH
Confidence 466777788887776665554441 333344567 888889999998876 44333222 22223456677777
Q ss_pred HHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 86 LFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 86 ~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
=|++-.. +.| +...|..+--+.-+.+.+.+++..|++..++ ++..+.+|+..-..+...+++++|.+-|+.
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 7776644 333 2333433333444677899999999998876 666689999999999999999999998875
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.23 Score=35.09 Aligned_cols=117 Identities=6% Similarity=-0.021 Sum_probs=80.4
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC--CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~ 82 (162)
+.--+++...|+.+++.+.+.- |.+.=...|=.++. .|..++|.+.++..- .|.+++--=+...-..|+..+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHH
Confidence 3344567788888888877664 55544444444444 788888888888775 356666666666666677777
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
|++-+.+..+. +..|...|.-+-+.|...|++++|---++++.-.
T Consensus 139 aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 139 AIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777776543 6667777888888888888888777777776654
No 128
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.28 E-value=0.011 Score=32.16 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=25.9
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
.+.+.|++++|.+.|++..+.. +-+...+..+-..+...|++++|...++.+.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555554433 11333344444555555555555555555443
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.28 E-value=0.056 Score=34.64 Aligned_cols=109 Identities=7% Similarity=0.025 Sum_probs=76.1
Q ss_pred hhchhhhcchhHHHHHhcCCCchhH-HHH--HHHhhC-CCChHHHHHHhhhhC---CCh----hHHHHHHHHHHcCCCch
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYI-ISR--FILTSL-PISLHFTRSLFNNVM---PPL----FAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~--ll~~~~-~~~~~~a~~~~~~m~---~~~----~~~~~li~~~~~~~~~~ 81 (162)
.++...+...++.+.+... .+++. ... +-..+. .|++++|...|+... |+. ...-.+-..+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677778888888876543 33332 333 334566 999999999999987 443 23334567778899999
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHH
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~ 124 (162)
+|+..++....... ....+...-+.+.+.|+.++|...++.
T Consensus 103 ~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999977433332 233455566888899999999998875
No 130
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.052 Score=39.24 Aligned_cols=145 Identities=10% Similarity=-0.041 Sum_probs=78.2
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC------------------CCh-----------
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------------------PPL----------- 64 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~------------------~~~----------- 64 (162)
|..+.|.+=|....+.+--..-..||..+..|..|+.+.|.+...++. ||+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 444555555555544333333456676666666666666666655441 221
Q ss_pred ----hHHHHHHHHHHcCCCchHHHHHHHHHH-HcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHH
Q 045917 65 ----FAYNTLIRAYAKTSCSIESIKLFDEML-KTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139 (162)
Q Consensus 65 ----~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 139 (162)
..+|.-...+.+.|+.+.|.+.+-+|. +..-+.|++|...+.-.=.. ++..++..=...+..-+.- -..|+-.
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 112222233345566666666666663 33344566666554433222 2233332222223222211 2578889
Q ss_pred HHHHHHhcCChhHHHHhhccc
Q 045917 140 LLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~m 160 (162)
++-.|||+.-++.|-.++.+-
T Consensus 316 lLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhC
Confidence 999999999999999887653
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.022 Score=46.63 Aligned_cols=107 Identities=11% Similarity=0.037 Sum_probs=85.5
Q ss_pred hHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHH
Q 045917 50 LHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 50 ~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
.+.|..+|+..- .|.+.=|-+=-.++..|++.+|.++|.+..+... -+..+|-.+...|...|.+..|.++++..
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777654 4566666676778889999999999999987644 34456778899999999999999999887
Q ss_pred HH-HhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 126 FK-VGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 126 ~~-~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
.+ ..-.-+..+...|-++|-+.|.+.+|.+..
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 65 444556888899999999999999998764
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.26 E-value=0.083 Score=39.31 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=74.8
Q ss_pred HhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHH
Q 045917 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
..|++.+|.+.+....+... -++..|..+-.+|. .|++++|...++... | +...|..+-.+|...|++++|...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34688899999998877543 34556666667777 999999999999886 4 567788888899999999999999
Q ss_pred HHHHHHcCCCCCCccHHHHHHHh
Q 045917 87 FDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 87 ~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
|++..+ +.|+...+..++.-|
T Consensus 93 ~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 93 LEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHH--hCCCCHHHHHHHHHH
Confidence 999876 557777666666554
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.23 E-value=0.025 Score=30.97 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=21.5
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
|++++|.+.++.+...... ++..+-.+..+|. .|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555433211 3333334444444 555555555555544
No 134
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.2 Score=42.04 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=75.8
Q ss_pred CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 47 PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
.+.++.|.+.-+... .+..|+.+-.+-.+.|.+++|.+-|-+. -|...|.-+++.+.+.|.+++-.++..+.+
T Consensus 1088 i~~ldRA~efAe~~n-~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN-EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhhHHHHHHHHHhhC-ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444443333 2346888888888888888888776543 367789999999999999999999888888
Q ss_pred HHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 127 ~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
+..-+| .+-+.|+-+|++.+++.+-+++.
T Consensus 1161 kk~~E~--~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1161 KKVREP--YIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HhhcCc--cchHHHHHHHHHhchHHHHHHHh
Confidence 876665 45578999999999998887764
No 135
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.20 E-value=0.016 Score=31.85 Aligned_cols=59 Identities=8% Similarity=-0.136 Sum_probs=36.1
Q ss_pred ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcC-ChhHHHHhhcc
Q 045917 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK-EIDFAKALFDE 159 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g-~~~~a~~~~~~ 159 (162)
.+|..+-..+...|++++|...+....+.. +-+...|..+-.+|.+.| ++++|.+.|++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 345555556666666777766666666653 234566666666666666 56666666543
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.16 E-value=0.18 Score=39.22 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC------CChhHHHHHHHHHHcCCCchHHHHHHHH-HHHc
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM------PPLFAYNTLIRAYAKTSCSIESIKLFDE-MLKT 93 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~ 93 (162)
.+..+++.-..--+.+|...|+.-- ..-+..|..+|.... ..++..+++|.-|+. ++.+-|.++|.- |+..
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF 431 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc
Confidence 3444433322223455666666655 666788888888886 367788888887765 577778888876 4444
Q ss_pred CCCCCCccH-HHHHHHhhhhccchhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 94 GLRPDNLTY-PFVVKASDQCLLIGVGGSVHSLIFKVGLHSD--KYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 94 ~~~p~~~t~-~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
| |+-.| ...++.+...++-..++.+|+.+...+..|| ..+|..+|+-=+.-|++..+.++-+++
T Consensus 432 ~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 432 G---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred C---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3 33333 5677888888888999999999888866555 578999999999999999888775543
No 137
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=0.22 Score=38.38 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=97.8
Q ss_pred HHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
-++...++|+.+++.....=...|.. |---+.+=- .|++..|..+|..-. |+...|++.|+.=.+-.+.+.|..+
T Consensus 118 mknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~I 196 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSI 196 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34456677777777664432222221 111111222 799999999998654 9999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH----hcCChhHHHHhh
Q 045917 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA----ACKEIDFAKALF 157 (162)
Q Consensus 87 ~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~----~~g~~~~a~~~~ 157 (162)
|..-+- +-|+..+|.-....-.++|....+.+++...... ..|...-..|+.+++ ++..++.|.-+|
T Consensus 197 YerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 197 YERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999754 4499999999888888999999999998876653 123333344445554 455556665554
No 138
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.21 Score=39.02 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=77.9
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHH--cCCCC----CCccHHHHHHHhhhhccch
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK--TGLRP----DNLTYPFVVKASDQCLLIG 116 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p----~~~t~~~li~~~~~~~~~~ 116 (162)
.+.++.|.+.|.+.. .|+...+.+=-...+.+.+.+|...|+.-+. ..+.+ ...+++.|=.+|.+.+.++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 567777777777665 3566666665555556778888888877652 12222 2234566667777888888
Q ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 117 ~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+|...++...... +.+..++.++--.|...|+++.|...|++
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 8888888777653 45788888888888888888888887764
No 139
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.07 E-value=0.15 Score=38.93 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=95.9
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhc-CCCchhHHHHHHHhhCCCChHHHHHHhhhhC---CChhHH-HHHHHHHHcCCCc
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTS-LDHNTYIISRFILTSLPISLHFTRSLFNNVM---PPLFAY-NTLIRAYAKTSCS 80 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~---~~~~~~-~~li~~~~~~~~~ 80 (162)
+++.+.+-..++.|+.+|-..++.| +.++++++++++..++.|+..-|.++|+-=- ||...| +-.+.-+.+.++-
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde 482 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDE 482 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH
Confidence 3444555567888999999999999 6789999999999999888888999988433 665554 4466667778888
Q ss_pred hHHHHHHHHHHHcCCC--CCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 81 IESIKLFDEMLKTGLR--PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~--p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
+.|..+|+.-... +. --...|-.+|+.-..-|++..+..+-+.+... .|-..+.....+-|+
T Consensus 483 ~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 483 ENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 8899999854321 11 12456888888888888887777776666543 344444444444444
No 140
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.29 Score=38.23 Aligned_cols=139 Identities=13% Similarity=0.013 Sum_probs=103.1
Q ss_pred hhcchhHHH-HHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 18 HHHQLPALF-LKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 18 ~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
+..++|-.+ ...+-.+|+.+...|=-.|. .|.++.|..-|+..- -|...||-+=..++...+.++|...|++.+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 334444333 45555578888888888888 999999999999876 468889999999999999999999999987
Q ss_pred HcCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHH---Hh------cCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 92 KTGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFK---VG------LHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 92 ~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~---~~------~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+ +.|+.+ ....|-=+|...|.+.+|.+.+-.... .+ ..++..+|.+|=.++...++.|.+.++..
T Consensus 492 q--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 492 Q--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred h--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 6 556533 334455567889999999887655432 21 12345688888888888888886665543
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.04 E-value=0.07 Score=34.80 Aligned_cols=81 Identities=7% Similarity=-0.061 Sum_probs=62.9
Q ss_pred CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 47 PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.|++++|.++|+-.. |. ..-|-.+=..+-..|++++|++.|......+. -|...+-.+-.++...|+.+.|++.|
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999999887 43 44455555556667999999999999876653 56677777888888999999999998
Q ss_pred HHHHHH
Q 045917 123 SLIFKV 128 (162)
Q Consensus 123 ~~~~~~ 128 (162)
+.....
T Consensus 127 ~~Ai~~ 132 (157)
T PRK15363 127 KAVVRI 132 (157)
T ss_pred HHHHHH
Confidence 877664
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.99 E-value=0.13 Score=36.62 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC----ccHHHHHHHhhhhccchhhhHHHHHHHHHhc--CcchhHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN----LTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--HSDKYIGN 138 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~ 138 (162)
..|...+..+.+.|++++|...|+...+. -|+. ..+-.+-..+...|++++|...|..+.+.-. ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34666665556667888888888887653 2333 2445566777778888888888877776411 11233333
Q ss_pred HHHHHHHhcCChhHHHHhhcc
Q 045917 139 TLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 139 ~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+..+|.+.|+.++|.++|++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 445567778888888887764
No 143
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.1 Score=40.12 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHHHHHHHHHHcC-----CCCCCcc--HHHHHHHhhhhccc
Q 045917 47 PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-----LRPDNLT--YPFVVKASDQCLLI 115 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~t--~~~li~~~~~~~~~ 115 (162)
.++++++...|++.. |+ +..||-.-..+...+++++|.+.|+.-.+.. +-.+..+ --.++..- ..+++
T Consensus 441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 677888888888776 43 6677777778888888888888888764421 1111111 11222222 23778
Q ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 116 ~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..|..+.....+... .....|.+|-..-...|++++|.++|++
T Consensus 520 ~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 520 NQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888887777766542 3456788888888899999999999975
No 144
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.98 E-value=0.028 Score=35.96 Aligned_cols=57 Identities=12% Similarity=-0.042 Sum_probs=45.2
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
..++..+...|+.+.+..+...+.... +.|...|..+|.+|.+.|+...|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 345556667889999999988888764 457889999999999999999999999875
No 145
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.95 E-value=0.018 Score=32.53 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=37.5
Q ss_pred cHHHHHHHhhhhccchhhhHHHHHHHHHh--c---Ccc-hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVG--L---HSD-KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 101 t~~~li~~~~~~~~~~~a~~i~~~~~~~~--~---~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++.+-..+...|++++|...++...+.. . .|+ ..++..+-.+|.+.|++++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555566666667777766666554321 1 122 55677788888888888888888764
No 146
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.14 Score=42.32 Aligned_cols=96 Identities=13% Similarity=-0.013 Sum_probs=64.5
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCC--CCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc--hhHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL--RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD--KYIG 137 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~ 137 (162)
.++..-+.|-+.|.-.|+++.+..+...+..... ..-...|-.+-+++-..|++++|..++..-.+. .+| +..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 4666777777888888888888888777755431 112334666777777778888888877665543 233 3334
Q ss_pred HHHHHHHHhcCChhHHHHhhcc
Q 045917 138 NTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 138 ~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
-.|-..|.+.|+++.|...|++
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHH
Confidence 5677788888888888777764
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.92 E-value=0.093 Score=34.23 Aligned_cols=83 Identities=8% Similarity=0.035 Sum_probs=62.5
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhH
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
+...|++++|..+|+-... +.|+... |-.|--.+-..|++++|...+........ -|+..+-.+=.+|.+.|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 4467899999999988765 3444444 34555566667889999999988877663 467888888889999999999
Q ss_pred HHHhhcc
Q 045917 153 AKALFDE 159 (162)
Q Consensus 153 a~~~~~~ 159 (162)
|++.|+.
T Consensus 122 A~~aF~~ 128 (157)
T PRK15363 122 AIKALKA 128 (157)
T ss_pred HHHHHHH
Confidence 9888863
No 148
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.87 E-value=0.6 Score=37.51 Aligned_cols=140 Identities=9% Similarity=0.005 Sum_probs=82.7
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
++-|+.+|....+- ++-+...|......=- .|..++...+|+... | ....|-.....+-..|++..|..++.+.
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34445555555443 2334455555544444 677777777777665 3 3444555555555567777777777776
Q ss_pred HHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 91 ~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+..- -+...|-+-++--.....++.|+.++..... ..|+..+|..-++.---.|+.++|.+++++
T Consensus 611 f~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 611 FEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred HHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 55321 1344455556666666677777777766554 346666776666666666777777766643
No 149
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.87 E-value=0.096 Score=41.94 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=81.4
Q ss_pred CCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CC-------------------------------hhHHHHHHHHHHcC
Q 045917 31 LDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PP-------------------------------LFAYNTLIRAYAKT 77 (162)
Q Consensus 31 ~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~-------------------------------~~~~~~li~~~~~~ 77 (162)
-+|++..|..+.+..- ..-+++|+++++... .- ..+|=..=.+..+.
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 3677888888887777 667778888777543 10 00111111122223
Q ss_pred CCchHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 78 SCSIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
++.+.|.+.|..-.. ..|| ...||++-.++.+.++-.+|...+.+..+.+ .-+..+|...+..-.+-|.+++|.+.
T Consensus 533 ek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 455555555544432 3343 4558888888888888888888888877776 44677788888888888888888887
Q ss_pred hccc
Q 045917 157 FDEM 160 (162)
Q Consensus 157 ~~~m 160 (162)
+..|
T Consensus 610 ~~rl 613 (777)
T KOG1128|consen 610 YHRL 613 (777)
T ss_pred HHHH
Confidence 7655
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.85 E-value=0.22 Score=40.89 Aligned_cols=126 Identities=10% Similarity=0.016 Sum_probs=94.2
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
+++..|.+-...+.+.- |+ ..|...++++. .|+.++|..+++... .|..|..++-..|...++.++|..+
T Consensus 23 ~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34555655554443321 22 23667777777 899999999999876 6889999999999999999999999
Q ss_pred HHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 87 ~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
|.+..+ .-|+..-...++.+|.+.+++.+-.++--++-+. ++.+++.+.++++.+.
T Consensus 100 Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 100 YERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence 999854 5577777888999999999888777766555553 4456777777777665
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.76 E-value=0.38 Score=37.74 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=84.2
Q ss_pred hcCCCchhHHHHHHHhhC---CC---ChHHHHHHhhhhC---CC-hhHHHHHHHHHHcC----C----CchHHHHHHHHH
Q 045917 29 TSLDHNTYIISRFILTSL---PI---SLHFTRSLFNNVM---PP-LFAYNTLIRAYAKT----S----CSIESIKLFDEM 90 (162)
Q Consensus 29 ~~~~~~~~~~~~ll~~~~---~~---~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~----~----~~~~a~~~~~~m 90 (162)
.+.+.+...|...+++.. .+ ....|..+|++.. |+ ...|..+-.++... . ++..+.+.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 445677888999998866 22 3778888998886 65 34444433333222 1 112222322222
Q ss_pred HHc-CCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 91 LKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 91 ~~~-~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
... ....+...|..+--.....|++++|...++.....+ |+...|..+-..|...|+.++|.+.+++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 221 122344566666555556789999999999988875 6788888899999999999999988764
No 152
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.75 E-value=0.41 Score=39.31 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=82.3
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
+.-.|--+-.+|...|++++|+++|........--+...|-.+-..+-..|..++|.+.+..+.... +-+...--+|-.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Las 491 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLAS 491 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHH
Confidence 4566888899999999999999999999887666667778888899999999999999999988763 234666678888
Q ss_pred HHHhcCChhHHHHhhccc
Q 045917 143 MYAACKEIDFAKALFDEM 160 (162)
Q Consensus 143 ~y~~~g~~~~a~~~~~~m 160 (162)
.|-..|+.|+|.+++..|
T Consensus 492 l~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHhcCCHHHHHHHHhcc
Confidence 999999999999998875
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.75 E-value=0.021 Score=31.04 Aligned_cols=51 Identities=16% Similarity=-0.071 Sum_probs=28.1
Q ss_pred HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+.+.|++++|...++.+.+.. +-+...+..+-.++...|++++|...|++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445566666666666655543 22455555555566666666666665554
No 154
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=95.69 E-value=0.13 Score=33.06 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=66.5
Q ss_pred HHHHHhcCCCch--hHHHHHHHhhC-CCChHHHHHHhhhhC----------CChhHHHHHHHHHHcCCC-chHHHHHHHH
Q 045917 24 ALFLKTSLDHNT--YIISRFILTSL-PISLHFTRSLFNNVM----------PPLFAYNTLIRAYAKTSC-SIESIKLFDE 89 (162)
Q Consensus 24 ~~~~~~~~~~~~--~~~~~ll~~~~-~~~~~~a~~~~~~m~----------~~~~~~~~li~~~~~~~~-~~~a~~~~~~ 89 (162)
..|++.+..++. ...|.++.... .+.+....++++.+. .+..+|++++.+..+..- ---+..+|+-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 334555555543 44688888888 888888888888776 456678999998877655 3446688888
Q ss_pred HHHcCCCCCCccHHHHHHHhhhh
Q 045917 90 MLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 90 m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
|++.+.+++..-|..+|+++.+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcC
Confidence 88888888888899999987654
No 155
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.66 E-value=0.31 Score=35.03 Aligned_cols=120 Identities=4% Similarity=-0.068 Sum_probs=78.7
Q ss_pred HHHHHHhhCCCChHHHHHHhhhhC------CChhHHHHHHHHHHc-CC-CchHHHHHHHHHHH-cCCCCCCccHHHHHHH
Q 045917 38 ISRFILTSLPISLHFTRSLFNNVM------PPLFAYNTLIRAYAK-TS-CSIESIKLFDEMLK-TGLRPDNLTYPFVVKA 108 (162)
Q Consensus 38 ~~~ll~~~~~~~~~~a~~~~~~m~------~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~ 108 (162)
|..|++. +..+.+|.++|+... .|......+++.... .+ .+..-.++.+-+.. .|-.++..+...+|+.
T Consensus 134 Y~~LVk~--N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~ 211 (292)
T PF13929_consen 134 YWDLVKR--NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEI 211 (292)
T ss_pred HHHHHHh--hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHH
Confidence 6655544 555667777777322 456666666666655 22 23333344454443 2566777777788888
Q ss_pred hhhhccchhhhHHHHHHHHH-hcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 109 SDQCLLIGVGGSVHSLIFKV-GLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 109 ~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
++..+++.+..+++...... +..-|...|..+|+.-.+.|+.+-...+.++
T Consensus 212 L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 212 LAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88888888888887776554 5566788888888888888888877776543
No 156
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.64 E-value=0.46 Score=33.09 Aligned_cols=147 Identities=8% Similarity=-0.112 Sum_probs=109.4
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--C----ChhHHHHHHHHHHcCC
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--P----PLFAYNTLIRAYAKTS 78 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~----~~~~~~~li~~~~~~~ 78 (162)
+..++..-|..+.|.+-|+...+.... +-.+.|.-=..+| .|++++|...|+... | ...+|..+--+..+.|
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g 153 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAG 153 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC
Confidence 445566667888888888877654322 2233455555666 899999999999876 3 3567888888888999
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHH
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
+++.|.+.|++-.+..- -...+.-.+.+...+.|++..|...++.....+. ++.......++.=-+.|+.+.+.+
T Consensus 154 q~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 154 QFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred CchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999766421 2344566788888899999999999988877765 777777777777777888777654
No 157
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.59 E-value=0.15 Score=38.91 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcC-CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhH-HHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI-GNTLL 141 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~-~~~ll 141 (162)
+..|...|+.-.+..-++.|..+|-+..+.| +.+++..++++++.++. |+...|..+|+--.+. -||... .+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 5668888888888888999999999998888 68899999999998864 5667777777654333 244433 35677
Q ss_pred HHHHhcCChhHHHHhhc
Q 045917 142 RMYAACKEIDFAKALFD 158 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~ 158 (162)
..+.+.++-+.|..+|+
T Consensus 474 ~fLi~inde~naraLFe 490 (660)
T COG5107 474 LFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHhCcHHHHHHHHH
Confidence 77778888888888776
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.58 E-value=0.38 Score=31.73 Aligned_cols=85 Identities=12% Similarity=-0.001 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC--CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD--NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll 141 (162)
...+..+-..+...|++++|...|++..+..-.++ ...+..+...+.+.|++++|...+....+.. +-+...+..+-
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 33455555556666777777777776654332222 2345556666666777777777666665542 12344445555
Q ss_pred HHHHhcCC
Q 045917 142 RMYAACKE 149 (162)
Q Consensus 142 ~~y~~~g~ 149 (162)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 55555555
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.54 E-value=0.036 Score=30.77 Aligned_cols=57 Identities=9% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
..|.+.+++++|.++++.+...+- .+...+...-..+.+.|++++|...++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999876522 255556667778888899999999988888764
No 160
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.53 E-value=0.26 Score=37.68 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=93.0
Q ss_pred HHHHhhchhhhcchhHHHHHhcCC-C---c-hhHHHHHHHhhCCCChHHHHHHhhhhC---CChhHHHHHHHHH--HcCC
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLD-H---N-TYIISRFILTSLPISLHFTRSLFNNVM---PPLFAYNTLIRAY--AKTS 78 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~-~---~-~~~~~~ll~~~~~~~~~~a~~~~~~m~---~~~~~~~~li~~~--~~~~ 78 (162)
+|.+.+++.+|+.++....+..-. | . ....+.++++|...+++..+....+.. | ...|-.+..+. .+.+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 345667889999988777554322 2 2 455688888888667777777777666 4 33444444443 3568
Q ss_pred CchHHHHHHHHHHHc--CCCC------------CCccHHHHHHHhhhhccchhhhHHHHHHHHHh----cCcchhHHHHH
Q 045917 79 CSIESIKLFDEMLKT--GLRP------------DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG----LHSDKYIGNTL 140 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~--~~~p------------~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~----~~~~~~~~~~l 140 (162)
+..+|.+.+..-.+. +-.| |..-=+..+.+....|++.+++.+...+...- +.-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 889998888776554 3222 11112445667778999999999888876543 34788999998
Q ss_pred HHHHHhcC
Q 045917 141 LRMYAACK 148 (162)
Q Consensus 141 l~~y~~~g 148 (162)
+-+|+++=
T Consensus 174 vlmlsrSY 181 (549)
T PF07079_consen 174 VLMLSRSY 181 (549)
T ss_pred HHHHhHHH
Confidence 88877653
No 161
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.77 Score=34.91 Aligned_cols=150 Identities=10% Similarity=-0.022 Sum_probs=92.7
Q ss_pred HHHHHHHhh--chhhhcchhHHHH-HhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHH---HHHHHHcC
Q 045917 6 IETLIQLSK--TAHHHHQLPALFL-KTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNT---LIRAYAKT 77 (162)
Q Consensus 6 ~~~~l~~~~--~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~---li~~~~~~ 77 (162)
+..++..|. +-..+-+.+-.+. ...++-+......+-+.+. .|+.++|...|+... .|+++... .--.+++.
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc
Confidence 344444443 3333444444443 3446778899999999999 999999999999887 44433222 12233456
Q ss_pred CCchHHHHHHHHHHHcC------------------------------CCCCCccHHHHH---HHhhhhccchhhhHHHHH
Q 045917 78 SCSIESIKLFDEMLKTG------------------------------LRPDNLTYPFVV---KASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~------------------------------~~p~~~t~~~li---~~~~~~~~~~~a~~i~~~ 124 (162)
|+.++...+...+.... +..|......+| ..+...++.++|.-.|+.
T Consensus 280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 66666666655543321 222333333332 233345566666666666
Q ss_pred HHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 125 IFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 125 ~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
..... +-+...|..|+++|...|++.+|.-.
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 65543 34688999999999999999998754
No 162
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.50 E-value=0.27 Score=40.96 Aligned_cols=124 Identities=9% Similarity=0.015 Sum_probs=87.8
Q ss_pred hcCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC---CC---hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC---
Q 045917 29 TSLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM---PP---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP--- 97 (162)
Q Consensus 29 ~~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--- 97 (162)
.+..| +...+-.|+..+. .+++++|..+.++.. |+ ..-+..+ .+.+.++..++.-+ .+... +..
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~-~~~~~~ 98 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS-FSQNLK 98 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh-cccccc
Confidence 33444 4677888899997 999999999988654 44 3333333 44555555555555 22211 122
Q ss_pred ----------------CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 98 ----------------DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 98 ----------------~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+......+..+|-+.|+.+++..+++.+.+.. +-|+.+.|.+-..|+.. ++++|.+++.+
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 22566777888888999999999999999987 45788999999999999 99999887653
No 163
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.44 Score=34.67 Aligned_cols=114 Identities=16% Similarity=0.077 Sum_probs=69.8
Q ss_pred CCChHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHH
Q 045917 47 PISLHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~ 124 (162)
.+++..+..+.++.+ .+..+.+..=....+.|+.+.|..=|++..+-+---....|+..+-.| +.|+...|.+...+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 556666666666655 233333333333456788888888888876654333455676655544 66778888888888
Q ss_pred HHHHhcC-------------cchh--------HHHHHHHH-------HHhcCChhHHHHhhcccC
Q 045917 125 IFKVGLH-------------SDKY--------IGNTLLRM-------YAACKEIDFAKALFDEMP 161 (162)
Q Consensus 125 ~~~~~~~-------------~~~~--------~~~~ll~~-------y~~~g~~~~a~~~~~~m~ 161 (162)
+.++|+. ||+. ..+.++.+ +.+.|+.+.|.+.+-+||
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 8777642 2211 12334443 347889999988888776
No 164
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.07 E-value=1 Score=36.31 Aligned_cols=142 Identities=11% Similarity=0.028 Sum_probs=74.8
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
|+...|+.+++..-... +.+..+|-+.++.-+ +..++.|..+|.... |+...|---++.---.++.++|.+++.+
T Consensus 598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 45555555555554432 225556666666666 677777777777665 5555554444444445556666666544
Q ss_pred HHHc------------------------------C---CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhH
Q 045917 90 MLKT------------------------------G---LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136 (162)
Q Consensus 90 m~~~------------------------------~---~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 136 (162)
-.+. | ++-...-|-.|.+---+.|.+-.|+.+++.....+ +.+...
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~l 755 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALL 755 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchh
Confidence 3221 1 11112223333333333445555555555544443 345666
Q ss_pred HHHHHHHHHhcCChhHHHHhh
Q 045917 137 GNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 137 ~~~ll~~y~~~g~~~~a~~~~ 157 (162)
|-..|++=.+.|+.+.|..+.
T Consensus 756 wle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 666666666677666665543
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.5 Score=35.21 Aligned_cols=116 Identities=8% Similarity=0.062 Sum_probs=71.4
Q ss_pred hHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHH-HHHHcCCCchHHHHHHHHHHHcCCC
Q 045917 23 PALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLI-RAYAKTSCSIESIKLFDEMLKTGLR 96 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~ 96 (162)
+..++..-..-|...+| +-++++ .|...+|+++|-.+. .|.++|..++ ++|.+.++++.|.+++-.+-.
T Consensus 382 lnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---- 456 (557)
T KOG3785|consen 382 LNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---- 456 (557)
T ss_pred HHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----
Confidence 33333333334444444 334555 788888888888776 5677776654 577788899988888766532
Q ss_pred CCCccHHH---HHHHhhhhccchhhhHHHHHHHHHhcCcchhH-------HHHHHHHHHh
Q 045917 97 PDNLTYPF---VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI-------GNTLLRMYAA 146 (162)
Q Consensus 97 p~~~t~~~---li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~-------~~~ll~~y~~ 146 (162)
+...|+. +.+-|-+.+.+--|-+.|..+.... |++.- +..++...+.
T Consensus 457 -~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG~f~~l~~ 513 (557)
T KOG3785|consen 457 -PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWEGKRGACAGLFRQLAN 513 (557)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccCCccchHHHHHHHHHc
Confidence 2223322 3467778888877777787777653 33333 3445555554
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.04 E-value=0.94 Score=37.85 Aligned_cols=148 Identities=8% Similarity=-0.048 Sum_probs=91.3
Q ss_pred HhhchhhhcchhHHHHHhcCCCch----hHHHHHHHhhC-CCChHHHHHHhhhhC--------CC--hhHHHHHHHHHHc
Q 045917 12 LSKTAHHHHQLPALFLKTSLDHNT----YIISRFILTSL-PISLHFTRSLFNNVM--------PP--LFAYNTLIRAYAK 76 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~-~~~~~~a~~~~~~m~--------~~--~~~~~~li~~~~~ 76 (162)
..|++++|...++.....-...+. ...+.+-..+. .|++++|...+.+.. +. ..++..+-..+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 346778888877776543111121 22333444455 999999999888764 11 2334445556777
Q ss_pred CCCchHHHHHHHHHHHc----CCCC---CCccHHHHHHHhhhhccchhhhHHHHHHHHHh--cCc--chhHHHHHHHHHH
Q 045917 77 TSCSIESIKLFDEMLKT----GLRP---DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG--LHS--DKYIGNTLLRMYA 145 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~----~~~p---~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~--~~~--~~~~~~~ll~~y~ 145 (162)
.|++++|...+++..+. +... ....+..+-..+...|++++|...+....... ..+ ....+..+-..+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 89999999999886442 2211 11223344455667799999998887764421 111 2334445666788
Q ss_pred hcCChhHHHHhhcc
Q 045917 146 ACKEIDFAKALFDE 159 (162)
Q Consensus 146 ~~g~~~~a~~~~~~ 159 (162)
..|+.+.|.+.+++
T Consensus 624 ~~G~~~~A~~~l~~ 637 (903)
T PRK04841 624 ARGDLDNARRYLNR 637 (903)
T ss_pred HcCCHHHHHHHHHH
Confidence 89999999887765
No 167
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.03 E-value=0.26 Score=35.54 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=59.3
Q ss_pred hHHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccH
Q 045917 23 PALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 102 (162)
++.|+..|+.-|..+|+.||+.+-.|.+ .....|....-+|.+.. +=+.+++++|...|+-||..+-
T Consensus 95 Lk~m~eyGVerDl~vYk~LlnvfPKgkf-----------iP~nvfQ~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e 161 (406)
T KOG3941|consen 95 LKYMKEYGVERDLDVYKGLLNVFPKGKF-----------IPQNVFQKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIE 161 (406)
T ss_pred HHHHHHhcchhhHHHHHHHHHhCccccc-----------ccHHHHHHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHH
Confidence 3444455555555555555443321111 23334455555555532 3467999999999999999999
Q ss_pred HHHHHHhhhhcc-chhhhHHHHHHHHH
Q 045917 103 PFVVKASDQCLL-IGVGGSVHSLIFKV 128 (162)
Q Consensus 103 ~~li~~~~~~~~-~~~a~~i~~~~~~~ 128 (162)
-.|++++++-+- ..+...+.-.|.+.
T Consensus 162 ~~lvn~FGr~~~p~~K~~Rm~yWmPkf 188 (406)
T KOG3941|consen 162 DILVNAFGRWNFPTKKVKRMLYWMPKF 188 (406)
T ss_pred HHHHHHhccccccHHHHHHHHHhhhhh
Confidence 999999998764 55666777777664
No 168
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.15 Score=37.13 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=72.2
Q ss_pred hcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--C--------ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 045917 29 TSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--P--------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP 97 (162)
Q Consensus 29 ~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 97 (162)
.|.+.++.+...++..-. ..+++++...+=..+ | +.++|--++. + =++++++-+...=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll---k-y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL---K-YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH---c-cChHHHHHHHhCcchhcccc
Confidence 455666677777777666 778888877665554 2 2333333333 2 36778999988888999999
Q ss_pred CCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 98 DNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 98 ~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
|..+++.+|+.+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999988777654
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.91 E-value=0.42 Score=34.08 Aligned_cols=93 Identities=12% Similarity=-0.116 Sum_probs=67.7
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC---CCh----hHHHHHHHHHHcCCCchHHHHHHHHHHHcCC--CCCCccHHHH
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM---PPL----FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL--RPDNLTYPFV 105 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~l 105 (162)
..|...+..+. .|++++|...|+.+. |+. ..+--+-..|...|++++|...|+...+.-- ......+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 45777777767 899999999999887 653 3555566778889999999999999975321 1112222234
Q ss_pred HHHhhhhccchhhhHHHHHHHHH
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
...+...|+.++|..+++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566789999999999888775
No 170
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.6 Score=36.61 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=92.0
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-------CC----hhHHHHHHHHHHcCCCch
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-------PP----LFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-------~~----~~~~~~li~~~~~~~~~~ 81 (162)
++++.|.+.+.+...- .+-||...+-+=-... .+.+.+|...|+... +. ..+++.+=..|.+.++.+
T Consensus 394 ~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 4566777777665432 2446777766655555 888999999988664 11 223555556677789999
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
+|+..|++-... .+-|..|++++--.+...|+++.|...+.... .+.|+-.+.+.++....
T Consensus 473 eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 473 EAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 999999987654 34577788888888889999999998877654 45788888888887654
No 171
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.38 Score=38.89 Aligned_cols=113 Identities=12% Similarity=-0.063 Sum_probs=87.2
Q ss_pred hcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHH
Q 045917 29 TSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106 (162)
Q Consensus 29 ~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 106 (162)
.|....-.+.+--+..+. .|+-..|.++-.+.+ ||-..|--=+.+++..+++++-+++-+.++ ++.-|.-++
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 444433344455555556 899999999999999 999999999999999999998887755553 255567799
Q ss_pred HHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 107 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
.+|.+.|+..+|.+++..+.. +.-.+.+|.+.|++.+|.++
T Consensus 752 e~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 999999999999988754321 12677899999999988775
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.83 E-value=0.54 Score=29.29 Aligned_cols=87 Identities=14% Similarity=-0.010 Sum_probs=59.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhH--HHHHHHhhC-CCChHHHHHHhhhhC---CC---hhHH-HHHHHHHH
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYI--ISRFILTSL-PISLHFTRSLFNNVM---PP---LFAY-NTLIRAYA 75 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~-~~~~~~a~~~~~~m~---~~---~~~~-~~li~~~~ 75 (162)
....+...|+.++|..+|+.....|....... +-.+=..+. .|++++|..+|++.. |+ .... ..+--++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677899999999999999887654322 222333444 999999999999876 54 2222 22223556
Q ss_pred cCCCchHHHHHHHHHHH
Q 045917 76 KTSCSIESIKLFDEMLK 92 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~ 92 (162)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 67999999988766543
No 173
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.81 E-value=0.9 Score=36.44 Aligned_cols=143 Identities=11% Similarity=0.047 Sum_probs=96.5
Q ss_pred HHHHHHhh--chhhhcchhHHHHHhcCCCchhHHHHHHHhhC-----CCChHHHHHHhhhhC------CChhHHHHHHHH
Q 045917 7 ETLIQLSK--TAHHHHQLPALFLKTSLDHNTYIISRFILTSL-----PISLHFTRSLFNNVM------PPLFAYNTLIRA 73 (162)
Q Consensus 7 ~~~l~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~a~~~~~~m~------~~~~~~~~li~~ 73 (162)
..++.+.| .++.|+.+|.+.++ |++|... -.+--.|+ .|....|..++++.. --...||+.|.-
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455555 57899999999988 7775432 22222333 788899999999876 235578988887
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCCccHHHH---HHHhhhhccchhhhHHHHHHHHH-hcCcchhHHHHHHHHHHhcCC
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV---VKASDQCLLIGVGGSVHSLIFKV-GLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l---i~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~ll~~y~~~g~ 149 (162)
.+..=-+....++|++..+. -||...-... .+.-++.|..+.|+.++..-.+- ....+...|.+.=..=.+.|+
T Consensus 632 aae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 632 AAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 77776677788888887664 5665544333 34456778888998888776553 223456667777777778888
Q ss_pred hhHHH
Q 045917 150 IDFAK 154 (162)
Q Consensus 150 ~~~a~ 154 (162)
=+...
T Consensus 710 edT~k 714 (835)
T KOG2047|consen 710 EDTYK 714 (835)
T ss_pred HHHHH
Confidence 44433
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.74 E-value=0.19 Score=27.79 Aligned_cols=46 Identities=7% Similarity=0.009 Sum_probs=25.6
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
.++++.|..+++.+. .+...|...=..+.+.|++++|...|+...+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666666666554 2344444455555556666666666665543
No 175
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.091 Score=38.93 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred hcchhHHHHHhcCCCchhHHHHHHHhhC--CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 19 HHQLPALFLKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 19 a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
|++.+...=..+..-|+.--..=+.+|. ..+++++...++.++ -|.+.+| +-.+++..|...+|.++|-...
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc
Confidence 4555554444444444433333333333 777888888877776 4444444 4567777899999999987663
Q ss_pred HcCCCCCCccHHH-HHHHhhhhccchhhhHHHHHHHHHhcCcchhHH-HHHHHHHHhcCChhHHHHhhccc
Q 045917 92 KTGLRPDNLTYPF-VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG-NTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 92 ~~~~~p~~~t~~~-li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~-~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
...+ -|..+|-+ |.+.|.+.+..+.|+.++-.+ .-..+.... ..+-+-+-+++++=-|-+.|+++
T Consensus 421 ~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 421 GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3333 45666644 557778888888887765443 222233333 33444666788887777777765
No 176
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=1.7 Score=34.45 Aligned_cols=138 Identities=11% Similarity=0.013 Sum_probs=75.0
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHH--HHHHHH--cCCCchHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNT--LIRAYA--KTSCSIESIKLFD 88 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~--li~~~~--~~~~~~~a~~~~~ 88 (162)
++.++|.+.-..+..-+ +-++..+..=+-+.. .+++++|..+.+.-. -..+++. +=.+|+ +.++.++|+..++
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~-~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG-ALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-hhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 35666666666666555 333344444444444 677777776555433 1111121 233333 3566676666655
Q ss_pred HHHHcCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHHHhc----------------------------CcchhHHHH
Q 045917 89 EMLKTGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFKVGL----------------------------HSDKYIGNT 139 (162)
Q Consensus 89 ~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~~----------------------------~~~~~~~~~ 139 (162)
|..++.. +-..-...+-+.+++++|..+++++.+++. .| ..+|..
T Consensus 104 -----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel 177 (652)
T KOG2376|consen 104 -----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYEL 177 (652)
T ss_pred -----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHH
Confidence 4444443 333444556677777777777777644321 11 223443
Q ss_pred H---HHHHHhcCChhHHHHhhcc
Q 045917 140 L---LRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 140 l---l~~y~~~g~~~~a~~~~~~ 159 (162)
+ -..++..|++.+|++++..
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHH
Confidence 3 3456689999999988754
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.55 E-value=0.14 Score=28.00 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc-cchhhhHHHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL-LIGVGGSVHSLIFKV 128 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~-~~~~a~~i~~~~~~~ 128 (162)
...|..+=..+...|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|.+.+....+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4456666667777788888888887766542 224445666666777777 677777777665543
No 178
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.46 E-value=0.47 Score=31.71 Aligned_cols=63 Identities=13% Similarity=-0.029 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC--ccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN--LTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
..+..+-..|.+.|+.+.|++.|.++.+....|.. ..+-.+|+.+...+++..+.........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666666667777777766666554333322 2234455566666666666665555433
No 179
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.41 E-value=0.017 Score=36.86 Aligned_cols=127 Identities=8% Similarity=0.017 Sum_probs=82.8
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHH
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
+..+...+........+..+...+...++...+.++..|+ .+..+...++++... .+-...++..+-+.|.++++.-
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd~~~~~~~c~~~~l~~~a~~ 91 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYDLDKALRLCEKHGLYEEAVY 91 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS-CTHHHHHHHTTTSHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccCHHHHHHHHHhcchHHHHHH
Confidence 3344445567777888888887777778889999999999 877788888888533 2444566777777888888888
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
+|..+....--.+ .+...++++.|.+.... .+++.+|..+++.+...+..
T Consensus 92 Ly~~~~~~~~al~---------i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 92 LYSKLGNHDEALE---------ILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHCCTTHTTCSS---------TSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHcccHHHHHH---------HHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 7777543211111 13455666666644322 34578888888877666543
No 180
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.21 E-value=0.31 Score=37.77 Aligned_cols=152 Identities=13% Similarity=0.035 Sum_probs=93.4
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCc------hhHHHHHHHhhC-C----CChHHHHHHhhhhC---CChhHHHHHHHHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHN------TYIISRFILTSL-P----ISLHFTRSLFNNVM---PPLFAYNTLIRAY 74 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~-~----~~~~~a~~~~~~m~---~~~~~~~~li~~~ 74 (162)
+++-.|+-+...+.+..-.+.+-... ...|...+..++ . ...+.|.++++.+. |+...|...-.-+
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33334555566555554433332222 234555555555 3 35788999999988 9988876655444
Q ss_pred Hc-CCCchHHHHHHHHHHHcCCC-C--CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH-HHHhcCC
Q 045917 75 AK-TSCSIESIKLFDEMLKTGLR-P--DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR-MYAACKE 149 (162)
Q Consensus 75 ~~-~~~~~~a~~~~~~m~~~~~~-p--~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~-~y~~~g~ 149 (162)
.+ .|++++|.+.|++....... | ....+--+.-.+.-..++++|...+..+.+..- -+..+|..+.. +|...|+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhcc
Confidence 43 69999999999976432111 1 111222233345567899999999999887532 34555555444 5556888
Q ss_pred h-------hHHHHhhcccC
Q 045917 150 I-------DFAKALFDEMP 161 (162)
Q Consensus 150 ~-------~~a~~~~~~m~ 161 (162)
. ++|.++|.+.+
T Consensus 356 ~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred chhhhhhHHHHHHHHHHHH
Confidence 8 88888887754
No 181
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.14 E-value=0.16 Score=28.62 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc--CCC---CC-CccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT--GLR---PD-NLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
+|+.+=..|...|++++|++.|++..+. ... |+ ..++..+-..+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666777776666665432 111 11 3345556666666777777777666544
No 182
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.13 E-value=0.18 Score=40.97 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=70.7
Q ss_pred CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHH
Q 045917 47 PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~ 123 (162)
.+.+.+|..+++.++ ..+--|..+-.+|+..|+++-|.++|-+-- -|+-.|..|.+.|++++|.++-.
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHH
Confidence 455666777777766 233347888899999999999999987642 25567888999999999988765
Q ss_pred HHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 124 ~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+.. |.+.....|-+--.-.-+.|++.+|++++-
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 533 334445556555555667777777777653
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.12 E-value=0.65 Score=35.56 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=36.6
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---CCh----hHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---PPL----FAYNTLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
+..++.+=..|. .|++++|...|+..- |+. .+|..+-.+|.+.|+.++|++.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555666 677777777776643 442 34666666677777777777776666553
No 184
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.10 E-value=0.49 Score=34.02 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=60.1
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHH-----cCCCCCCccHHH
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-----TGLRPDNLTYPF 104 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~~ 104 (162)
..++..+...+. .|+++.+...+++.- -+...|..+|.+|.+.|+...|...|+.+++ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344566777777 888888888888776 5788899999999999999999999999866 488888877776
Q ss_pred HHHH
Q 045917 105 VVKA 108 (162)
Q Consensus 105 li~~ 108 (162)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6666
No 185
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.05 E-value=1.6 Score=31.51 Aligned_cols=108 Identities=8% Similarity=-0.007 Sum_probs=66.5
Q ss_pred chhhhcchhHHHHH-hcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC------CChhHHHHHHHHHHcCCCchHHH
Q 045917 15 TAHHHHQLPALFLK-TSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM------PPLFAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 15 ~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~------~~~~~~~~li~~~~~~~~~~~a~ 84 (162)
-+.+|..+++.... ..+-.|+.+...+++.-. ...+..-.++.+-+. ++..+...+|..++..+++.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 33444444443221 335566666777776665 122222222222222 67777788888888888888888
Q ss_pred HHHHHHHHc-CCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 85 KLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 85 ~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
+++..-... +..-|..-|..+|+.....|+..-.+++.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 888776544 56667888888888888888766554443
No 186
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.94 E-value=0.61 Score=37.63 Aligned_cols=146 Identities=14% Similarity=-0.008 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCC
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTS 78 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~ 78 (162)
...+..++.++|-...|..++..+ ..|...+.+|. .|+..+|..+...-- ||...|..+-.......
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 456777888888888888877764 34677788888 888888887766543 77777777766666666
Q ss_pred CchHHHHHHHHH-HHc----C-------------------CCCCC---ccHHHHHHHhhhhccchhhhHHHHHHHHHhcC
Q 045917 79 CSIESIKLFDEM-LKT----G-------------------LRPDN---LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH 131 (162)
Q Consensus 79 ~~~~a~~~~~~m-~~~----~-------------------~~p~~---~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~ 131 (162)
-+++|.++.+.- .+. | ++.+. .+|-.+=-+..+.++++.+-+.|..-... .
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~ 549 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--E 549 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--C
Confidence 666666666552 110 1 11111 11211112223456666666666555443 4
Q ss_pred cc-hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 132 SD-KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 132 ~~-~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
|| ...||++-.+|.+.|+-.+|.+.+.|
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 55 67899999999999999999988765
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.77 E-value=2 Score=31.63 Aligned_cols=80 Identities=10% Similarity=-0.042 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
.|+.--|-.-+.+++ .+++++-+.+-+. ..+++.|-.++..|.+.|+..+|...... .++..-++.|.
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKsPIGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~ 273 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS-KKSPIGYEPFVEACLKYGNKKEASKYIPK----------IPDEERVEMYL 273 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCCCCChHHHHHHHHHCCCHHHHHHHHHh----------CChHHHHHHHH
Confidence 478888999999999 9999998887654 45668999999999999999999988766 33466788889
Q ss_pred hhccchhhhHHH
Q 045917 111 QCLLIGVGGSVH 122 (162)
Q Consensus 111 ~~~~~~~a~~i~ 122 (162)
+.|++.+|.+.-
T Consensus 274 ~~~~~~~A~~~A 285 (319)
T PF04840_consen 274 KCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHH
Confidence 999998886653
No 188
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.76 E-value=0.93 Score=34.76 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc----cHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL----TYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
.+...|+.+=.+|.+.|++++|+..|++-.+ +.|+.. +|..+-.+|...|+.++|...++...+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999765 457754 5889999999999999999988887664
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.52 E-value=0.79 Score=32.93 Aligned_cols=151 Identities=8% Similarity=-0.056 Sum_probs=84.0
Q ss_pred HHHHhhchhhhcchhHHHHHhc--CCCc---hhHHHHHHHhhCCCChHHHHHHhhhhC--------CC--hhHHHHHHHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTS--LDHN---TYIISRFILTSLPISLHFTRSLFNNVM--------PP--LFAYNTLIRA 73 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~ll~~~~~~~~~~a~~~~~~m~--------~~--~~~~~~li~~ 73 (162)
.+...+++++|-+.|....... ..-. ...|......|...++++|...++... |+ ...+..+=..
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ 123 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEI 123 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444456666666655543222 1111 122333333333336666666666543 22 3345556666
Q ss_pred HHcC-CCchHHHHHHHHHHHc----CCCCC--CccHHHHHHHhhhhccchhhhHHHHHHHHHhc-----Ccchh-HHHHH
Q 045917 74 YAKT-SCSIESIKLFDEMLKT----GLRPD--NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-----HSDKY-IGNTL 140 (162)
Q Consensus 74 ~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-----~~~~~-~~~~l 140 (162)
|-.. |++++|++.|++-.+. + .+. ...+..+...+.+.|++++|.++++.+...-. ..+.. .+-..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 7777 8999999999886432 3 111 23345667788889999999999998876432 11221 22334
Q ss_pred HHHHHhcCChhHHHHhhccc
Q 045917 141 LRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 141 l~~y~~~g~~~~a~~~~~~m 160 (162)
+-++...|++-.|.+.|++.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44667789999999888763
No 190
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.36 E-value=0.65 Score=27.74 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
++.+-++.+....+.|+.....+.+++|-+.+++..|..+++.++.+ +..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 34444555555677888888888888888888888888888776632 1223445655554
No 191
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.35 E-value=2.6 Score=32.55 Aligned_cols=95 Identities=5% Similarity=-0.084 Sum_probs=54.8
Q ss_pred CChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 48 ISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 48 ~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
|+++.|.++-++. .+...|..|=....+.|+++-|.+.|.+.++ |..|+--|.-.|+.+.-.++-.....
T Consensus 332 g~L~~A~~~a~~~-~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 332 GNLDIALEIAKEL-DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp T-HHHHHHHCCCC-STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444433332 4566888888888888888888888777643 55555555666666666665555444
Q ss_pred HhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 128 ~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.|- ++.-..++.-.|+++++.+++.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 432 3444455555666666666554
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=2.4 Score=30.49 Aligned_cols=130 Identities=8% Similarity=-0.016 Sum_probs=75.6
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHH-----HHH
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIR-----AYA 75 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~-----~~~ 75 (162)
+..+...+.+.-....+..+.+...+.++...+.|.+.-- .|+.+.|...|++.+ .|-.+++.++. .|.
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 3333334455555666777766666677777777777777 888888888888665 44444444432 223
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHH
Q 045917 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 139 (162)
-.+++..|...|.+....+- .|.+..|+=.-...-.|++.+|.+..+.+... .|...+-++
T Consensus 264 g~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred cccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 35677777777777654311 12222232222223357788888877777654 344444443
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.06 E-value=0.93 Score=32.77 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=56.9
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhH
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
..+.+++.+|+..|.+-.+ +.|+ .+-|..=..+|.+.|.++.|.+-.+....-. +-....|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3456788888888888765 4554 4445666788888888888866655544322 1225667777778888888888
Q ss_pred HHHhhcc
Q 045917 153 AKALFDE 159 (162)
Q Consensus 153 a~~~~~~ 159 (162)
|.+.|.+
T Consensus 168 A~~aykK 174 (304)
T KOG0553|consen 168 AIEAYKK 174 (304)
T ss_pred HHHHHHh
Confidence 8887654
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.06 E-value=1.6 Score=34.36 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=53.9
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
.+...|.++--.....|++++|...+++..... |+...|..+-+.+...|+.++|...+....+..
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345677777555666799999999999987755 788889999999999999999999988876643
No 195
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.89 E-value=0.17 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc
Q 045917 136 IGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 136 ~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+|..|-+.|.+.|++++|.++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356777888888888888888765
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=0.89 Score=32.56 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH-----
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL----- 141 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll----- 141 (162)
.+.+++...-.|++.-.++++.+..+..-+-+..-.+.|.+...+.|+.+.+...|+.+.+..-..|-.+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445555555667777777888887776555566666666666677788888888887776544334434333333
Q ss_pred HHHHhcCChhHHHHhhcccC
Q 045917 142 RMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~m~ 161 (162)
..|.-.+++..|.+.|++++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred hheecccchHHHHHHHhhcc
Confidence 34455666666666666554
No 197
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.80 E-value=0.52 Score=28.45 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
+-++.+....+.|+.....+.+++|.+.+++..|.++++.+..+ +.+....|..++.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33344444556666666666666666666666666666665443 2222235555443
No 198
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.65 E-value=1.7 Score=27.51 Aligned_cols=124 Identities=8% Similarity=-0.011 Sum_probs=66.7
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHH
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a 83 (162)
.++..+...+........+..+.+.+ ..++...|.++..|+ .. .......++. .++.+....+++.|-+.+-++++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-ccccCCHHHHHHHHHHcCcHHHH
Confidence 34555555566666777777776665 366777888888877 42 2333344441 13344444566666666666666
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHhhhh-ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQC-LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~-~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
.-++..+.. +...++.+... ++.+.|.++... ..+...|..++..+.+
T Consensus 89 ~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 89 VELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 666655522 11122222222 455555554433 2255677776666553
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.55 E-value=1.6 Score=36.87 Aligned_cols=122 Identities=11% Similarity=0.000 Sum_probs=75.5
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHH--
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVK-- 107 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~-- 107 (162)
..|..|=..|. ..+...|.+-|+..- .+..++......|+...+++.|..+.-.- ....| -...++..-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~--~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA--AQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH--hhhchHHHHHhhhhhccc
Confidence 45666666666 456677777777654 56778888999999999999999883221 11111 1111122211
Q ss_pred HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+-..+++.++..=|+...+.. +.|...|..|-.+|.++|++.-|.++|++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 1223344444443333333332 456788889999999999999999999763
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=91.97 E-value=2.5 Score=27.95 Aligned_cols=90 Identities=8% Similarity=-0.139 Sum_probs=63.5
Q ss_pred HHHHHHhhCCCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 38 ISRFILTSLPISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 38 ~~~ll~~~~~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
|..--+.|..|++++|+.+|.-.. -+..=|-.|=..+-..+++++|.+.|...-..+. -|...+--.-..+...|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 444444444999999999999876 3333455555556667999999999988655432 34444555667777889
Q ss_pred cchhhhHHHHHHHHH
Q 045917 114 LIGVGGSVHSLIFKV 128 (162)
Q Consensus 114 ~~~~a~~i~~~~~~~ 128 (162)
+.+.|+..|......
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999988887763
No 201
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.87 E-value=6.9 Score=32.88 Aligned_cols=148 Identities=7% Similarity=-0.040 Sum_probs=88.4
Q ss_pred HhhchhhhcchhHHHHHhcC------CCc-hhHHHHHH-HhhC-CCChHHHHHHhhhhC---C--C----hhHHHHHHHH
Q 045917 12 LSKTAHHHHQLPALFLKTSL------DHN-TYIISRFI-LTSL-PISLHFTRSLFNNVM---P--P----LFAYNTLIRA 73 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~ll-~~~~-~~~~~~a~~~~~~m~---~--~----~~~~~~li~~ 73 (162)
..++.+++...+......-- .+. ......+. ..+. .|++++|...+++.. + + ....+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 34567777777766543211 111 11112222 2334 899999999888753 2 2 1234555556
Q ss_pred HHcCCCchHHHHHHHHHHHcCCC---CC--CccHHHHHHHhhhhccchhhhHHHHHHHHH----hcC--c-chhHHHHHH
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLR---PD--NLTYPFVVKASDQCLLIGVGGSVHSLIFKV----GLH--S-DKYIGNTLL 141 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~---p~--~~t~~~li~~~~~~~~~~~a~~i~~~~~~~----~~~--~-~~~~~~~ll 141 (162)
+...|++++|...+.+.....-. +. ..+...+-..+...|+++.|...+...... +.. + ....+..+-
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 67789999999999887643111 11 123344556677889999999988775442 211 1 123344455
Q ss_pred HHHHhcCChhHHHHhhcc
Q 045917 142 RMYAACKEIDFAKALFDE 159 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~ 159 (162)
..+...|++++|...+++
T Consensus 581 ~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 581 QLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 567778999999887765
No 202
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.86 E-value=2.5 Score=27.78 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=61.8
Q ss_pred hHHHHHHHhhC----CCChHHHHHHhhhhC---C---ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHH
Q 045917 36 YIISRFILTSL----PISLHFTRSLFNNVM---P---PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105 (162)
Q Consensus 36 ~~~~~ll~~~~----~~~~~~a~~~~~~m~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 105 (162)
.+.+.|+..+. .++.++++.+++.+. | ...++...+. ..+|++.+|..+|++..+.. |... |..-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~--~~~p-~~kA 82 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA--PGFP-YAKA 82 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC--CCCh-HHHH
Confidence 34555666554 678888888888887 4 3444555543 66889999999999986543 3333 3333
Q ss_pred HHHhhhhccchhhhHHH-HHHHHHhcCcchhHHHHHHHHHHhcCChhHHH
Q 045917 106 VKASDQCLLIGVGGSVH-SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~-~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~ 154 (162)
+.++|-...-+..++.+ ..+...+- |..+ ..|++.+-+..+...|.
T Consensus 83 LlA~CL~~~~D~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 83 LLALCLYALGDPSWRRYADEVLESGA--DPDA-RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchh
Confidence 44444333333334433 33444432 3333 45555555555544443
No 203
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.74 E-value=2.2 Score=26.94 Aligned_cols=106 Identities=13% Similarity=0.032 Sum_probs=61.6
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
...++..+. .+........++.+. .+...+|.+|..|++.+ ..+.++.++. .++.......++.|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345666666 677777777777664 44556777888777653 3444444442 24555566677777777
Q ss_pred ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc-CChhHHHHhhcc
Q 045917 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC-KEIDFAKALFDE 159 (162)
Q Consensus 113 ~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~-g~~~~a~~~~~~ 159 (162)
+-++++..++..+.. +...+..+... ++++.|.+.+.+
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 766666666544321 22233333333 666666666544
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=91.68 E-value=1.4 Score=29.07 Aligned_cols=82 Identities=10% Similarity=-0.093 Sum_probs=57.9
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCCccH-HHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHH
Q 045917 75 AKTSCSIESIKLFDEMLKTGLRPDNLTY-PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a 153 (162)
-..|++++|..+|+-+...+ |...-| ..|-..+-..+++++|...+......+. -|+...-..=.+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 35799999999999986633 222334 4444455556889999999887766543 3444455566899999999999
Q ss_pred HHhhcc
Q 045917 154 KALFDE 159 (162)
Q Consensus 154 ~~~~~~ 159 (162)
+..|..
T Consensus 125 ~~~f~~ 130 (165)
T PRK15331 125 RQCFEL 130 (165)
T ss_pred HHHHHH
Confidence 998753
No 205
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.58 E-value=1.6 Score=27.93 Aligned_cols=83 Identities=10% Similarity=-0.066 Sum_probs=45.6
Q ss_pred CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 47 PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
+|++.....-+-.+..+..-....+....+.|+-+.-.++++++.. .-.+++...-.+-.+|.+.|+..++.++....-
T Consensus 69 C~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 69 CGNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4445554444444444444455566677777777777777777653 233455555666777777777777777777777
Q ss_pred HHhc
Q 045917 127 KVGL 130 (162)
Q Consensus 127 ~~~~ 130 (162)
++|.
T Consensus 148 ekG~ 151 (161)
T PF09205_consen 148 EKGL 151 (161)
T ss_dssp HTT-
T ss_pred Hhch
Confidence 7665
No 206
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=3.5 Score=31.59 Aligned_cols=110 Identities=14% Similarity=0.009 Sum_probs=70.5
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHH----HHc-------C-----------------
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEM----LKT-------G----------------- 94 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~-------~----------------- 94 (162)
.++.++|.--|+... -+...|.-++.+|...|++++|+-+-++- .++ |
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 788999998898877 36888999999999999999988665542 111 1
Q ss_pred ------CCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 95 ------LRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 95 ------~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+.|+.. ..+.+.+-|...|..+++..+.+.-... .||....+.|=+.+...+.+.+|+.-|.
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111 1223334444455555555555544432 5677777777777777777777776553
No 207
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.37 E-value=3 Score=27.68 Aligned_cols=41 Identities=5% Similarity=-0.036 Sum_probs=30.3
Q ss_pred chhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 21 QLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
+..+.+.+.+++|++..+..+++.+. .|++..-..++.--.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 34555667888888889999999888 888777766665433
No 208
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.31 E-value=0.12 Score=32.86 Aligned_cols=25 Identities=12% Similarity=0.051 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
....+.++..|++.++.++.+++++
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4455556666666555555555544
No 209
>PLN02789 farnesyltranstransferase
Probab=91.26 E-value=4.7 Score=29.75 Aligned_cols=138 Identities=7% Similarity=-0.086 Sum_probs=81.2
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CC-ChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCc
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PI-SLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~-~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~ 80 (162)
-.++...+..++|..+...+.+.... +..+|+..=..+. .| .++++...++.+. .+...|+.--..+.+.|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 34444455666777777666544311 1223333333333 44 5678888877765 4556677554444455542
Q ss_pred --hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc
Q 045917 81 --IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 81 --~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~ 147 (162)
++++++++++.+..- -|..+|+.---.+...|+++++.+.+..+.+.+. .+...|+..-..+.+.
T Consensus 123 ~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 123 AANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRS 189 (320)
T ss_pred hhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhc
Confidence 567778777765322 3555666666666677788888888888887764 3566666655444444
No 210
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.06 E-value=0.51 Score=20.55 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChhHHHHhhcc
Q 045917 137 GNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 137 ~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
...+-..+...|++++|.+++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 44566788889999999888764
No 211
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.63 E-value=0.43 Score=22.91 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 135 YIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 135 ~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+++.|-..|...|++++|.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHH
Confidence 4678888889999999999888765
No 212
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.59 E-value=0.76 Score=21.69 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHH
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
|+.|=..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555666666665555
No 213
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.13 E-value=8.8 Score=31.02 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=52.4
Q ss_pred CChhHHHH--HHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHH
Q 045917 62 PPLFAYNT--LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138 (162)
Q Consensus 62 ~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 138 (162)
|.+..|+. +..++-+.|+++.|...++.-.. -.|+.+- |.+=.+.+...|++++|...+.+..+... +|+.+=+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INs 443 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINS 443 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHH
Confidence 44555554 55566667777777777666543 1222111 11112566667777777777776666543 4555544
Q ss_pred HHHHHHHhcCChhHHHHhh
Q 045917 139 TLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 139 ~ll~~y~~~g~~~~a~~~~ 157 (162)
--.+-..+.++.++|.++.
T Consensus 444 KcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHccccHHHHHHH
Confidence 4555555666666666654
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.12 E-value=5.7 Score=30.96 Aligned_cols=125 Identities=11% Similarity=0.021 Sum_probs=85.5
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC--C---------ChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCC
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM--P---------PLFAYNTLIRAYAK----TSCSIESIKLFDEMLKTGLRPD 98 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~---------~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~ 98 (162)
|.....++...+ .|+=+.+.+.+++-. . -...|..++..+.. ..+.+.|.+++.++.+ --|+
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~ 265 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPN 265 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCC
Confidence 344566666777 888888888888664 2 23446666655544 4577888899998865 4588
Q ss_pred CccHHHHH-HHhhhhccchhhhHHHHHHHHHh--c-CcchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 99 NLTYPFVV-KASDQCLLIGVGGSVHSLIFKVG--L-HSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 99 ~~t~~~li-~~~~~~~~~~~a~~i~~~~~~~~--~-~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
..-|...- +.+...|++++|.+.++...... . +.....+.-+.-++.-.+++++|.+.|.++.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 77764432 44556789999999998654311 1 2334555667777889999999999988764
No 215
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=12 Score=32.36 Aligned_cols=84 Identities=11% Similarity=-0.069 Sum_probs=61.7
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
+..|+.+-++=. .|.+.+|..-|=.. -|+..|..+|....+.|.+++-.+.+...+++.-+|... +.||-+|++.+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 455777766666 67777766554322 567789999999999999999988887766666666554 46888899888
Q ss_pred cchhhhHH
Q 045917 114 LIGVGGSV 121 (162)
Q Consensus 114 ~~~~a~~i 121 (162)
++.+.+..
T Consensus 1181 rl~elE~f 1188 (1666)
T KOG0985|consen 1181 RLTELEEF 1188 (1666)
T ss_pred hHHHHHHH
Confidence 87776654
No 216
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.99 E-value=5.8 Score=33.28 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=16.4
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 132 SDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 132 ~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
.|...+-.|-+.|-..|++-+|..+|
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34555556666777777776666655
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.96 E-value=0.53 Score=23.35 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 135 YIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 135 ~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.++..+-..|...|++++|.++|++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677888899999999999988764
No 218
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.84 E-value=5.3 Score=28.13 Aligned_cols=49 Identities=4% Similarity=-0.168 Sum_probs=28.6
Q ss_pred hhhhccchhhhHHHHHHHHH--hcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 109 SDQCLLIGVGGSVHSLIFKV--GLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 109 ~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
|.+.|.+..|..-++.+.+. +.+......-.+..+|.+.|..++|..+.
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33445554444445555442 22233444556778888899888887754
No 219
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.83 E-value=2.4 Score=30.74 Aligned_cols=92 Identities=17% Similarity=0.092 Sum_probs=65.0
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
++++|.+.|....... +.|++-|..--.+|+ .|..+.|.+=.+... | -.-+|..|=.+|...|++++|.+.|+.
T Consensus 96 ~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 4566666666665432 345666777777888 888888887776655 2 356788888888889999999999887
Q ss_pred HHHcCCCCCCccHHHHHHHh
Q 045917 90 MLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 90 m~~~~~~p~~~t~~~li~~~ 109 (162)
-.+ +.|+..+|-.=++..
T Consensus 175 aLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 175 ALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred hhc--cCCCcHHHHHHHHHH
Confidence 654 778777775544443
No 220
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.80 E-value=3.3 Score=34.43 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCChHHHHHHhhhhC---CChhHHHHHHHHH--HcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHH
Q 045917 47 PISLHFTRSLFNNVM---PPLFAYNTLIRAY--AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i 121 (162)
.+++..|..-.+... |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|.+.+..+++..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 567777777666654 442 344444444 4579999999888887655554 888999999999999999999999
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHhcCChhH
Q 045917 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
++..... -|+......+..+|++-+++.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 9988765 4667777788888888887764
No 221
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.79 E-value=0.74 Score=33.12 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH-----HhcCcchhHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK-----VGLHSDKYIGNTL 140 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~-----~~~~~~~~~~~~l 140 (162)
++..++..+...|+.+.+.+.++++.+.. +-+...|..++.+|.+.|+...|...++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34555666666666666666666665432 23555566777777777777777776666544 4666666666555
Q ss_pred HHH
Q 045917 141 LRM 143 (162)
Q Consensus 141 l~~ 143 (162)
-..
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.69 E-value=5.5 Score=28.46 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc----CCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc-Cc-chhHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT----GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-HS-DKYIGNT 139 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-~~-~~~~~~~ 139 (162)
.|+.-+..+ +.|++..|...|.+-.+. ...||. +-.|-+++...|++++|..+|..+.+.-. .| -+...--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 477777655 456688888888887654 233443 33477888888888888888877766421 11 1344555
Q ss_pred HHHHHHhcCChhHHHHhhccc
Q 045917 140 LLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~m 160 (162)
|-.+..+.|+.++|..+|++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 666777888888888887653
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.66 E-value=5.1 Score=31.36 Aligned_cols=51 Identities=16% Similarity=0.001 Sum_probs=29.7
Q ss_pred HcCCCchHHHHHHHHHHHcC-CCCCCccHHHHHHHhhhhccchhhhHHHHHH
Q 045917 75 AKTSCSIESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
-+.|+.++|.+.|++|.+.. ..-+.-.-..|++++-..+...++..+...=
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34577777777777765332 1112223455677777777777776666553
No 224
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=89.65 E-value=6.7 Score=31.65 Aligned_cols=128 Identities=15% Similarity=0.066 Sum_probs=82.2
Q ss_pred CCchhHHH--HHHHhhC-CCChHHHHHHhhhhC---CCh-hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHH
Q 045917 32 DHNTYIIS--RFILTSL-PISLHFTRSLFNNVM---PPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104 (162)
Q Consensus 32 ~~~~~~~~--~ll~~~~-~~~~~~a~~~~~~m~---~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 104 (162)
+|++..|+ -+.+.|- .|+++.|+...+..- |+. ..|-+=-+.+.+.|+++.|...+++-.+.+. ||...=+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHH
Confidence 45555554 4556666 999999999999887 432 2233334777889999999999998865432 33221113
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHhc--C---cchhHHHHHH---HHHHhcCChhHHHHhhccc
Q 045917 105 VVKASDQCLLIGVGGSVHSLIFKVGL--H---SDKYIGNTLL---RMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 105 li~~~~~~~~~~~a~~i~~~~~~~~~--~---~~~~~~~~ll---~~y~~~g~~~~a~~~~~~m 160 (162)
-.+-..+..+.++|.++.....+.|. . -+.....-++ .+|.+.|.+..|.+=|.++
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 44455567889999999988888774 0 0111111122 3567788888887766654
No 225
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=9.3 Score=30.57 Aligned_cols=118 Identities=10% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHHHHhhC-CCChHHHHHHhh--------hhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCCC---
Q 045917 37 IISRFILTSL-PISLHFTRSLFN--------NVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPDN--- 99 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~--------~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~--- 99 (162)
+.-+++.... .|+++.|.+++. ... ..+.+-.+++..+.+.++-..|-.++.+-...- -.+..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 4444555556 899999999888 333 345566777778888888888888887754321 11222
Q ss_pred -ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 100 -LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 100 -~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
.++.-+...--+.|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|..+
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 223333444456789999999999999864 57899999999999875 34555444
No 226
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.53 E-value=4 Score=26.18 Aligned_cols=84 Identities=13% Similarity=0.008 Sum_probs=55.4
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHH---HHhhhhccchhhh
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV---KASDQCLLIGVGG 119 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li---~~~~~~~~~~~a~ 119 (162)
.|+++.|.+.|...- .....||.--.++.-.|+.++|++=+.+-.+..-.-......+.+ .-|...|+.+.|+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 788888888888765 456778888888888888888888777766542222222222222 2334457777787
Q ss_pred HHHHHHHHHhc
Q 045917 120 SVHSLIFKVGL 130 (162)
Q Consensus 120 ~i~~~~~~~~~ 130 (162)
.=|+...+.|.
T Consensus 136 ~DFe~AA~LGS 146 (175)
T KOG4555|consen 136 ADFEAAAQLGS 146 (175)
T ss_pred HhHHHHHHhCC
Confidence 77777777764
No 227
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=89.45 E-value=2.8 Score=25.59 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=32.0
Q ss_pred ChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 49 SLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 49 ~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
+++++++.+++-. -|..++..|..+|..++|++++.+..+
T Consensus 28 ~~~~~e~~L~~~~----~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG----KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC----CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4555555555533 799999999999999999999999876
No 228
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=89.38 E-value=0.61 Score=29.60 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=25.9
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh
Q 045917 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
+-|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346678999999999999999984 67777654
No 229
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.36 E-value=4.3 Score=26.39 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=43.0
Q ss_pred HHHHHHHhhC----CCChHHHHHHhhhhC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHH
Q 045917 37 IISRFILTSL----PISLHFTRSLFNNVM------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106 (162)
Q Consensus 37 ~~~~ll~~~~----~~~~~~a~~~~~~m~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 106 (162)
+.+.|++... ..++++++.+++.+. +...++-..+. ..+|++.+|..+|++..+.+..+ .|..-+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL 83 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSAGAP---PYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccCCCc---hHHHHH
Confidence 3455555444 677788888888776 33445555543 56788888888888886654221 244444
Q ss_pred HHhhhh
Q 045917 107 KASDQC 112 (162)
Q Consensus 107 ~~~~~~ 112 (162)
.++|-.
T Consensus 84 ~A~CL~ 89 (153)
T TIGR02561 84 LALCLN 89 (153)
T ss_pred HHHHHH
Confidence 444433
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=6.4 Score=28.13 Aligned_cols=92 Identities=9% Similarity=-0.008 Sum_probs=69.7
Q ss_pred HHHHHHHhhCCCChHHHHHHhhhhC---C-ChhHHHH---HHHHHHcCCCchHHHHHHHHHHHcC-CCCC-CccHHHHHH
Q 045917 37 IISRFILTSLPISLHFTRSLFNNVM---P-PLFAYNT---LIRAYAKTSCSIESIKLFDEMLKTG-LRPD-NLTYPFVVK 107 (162)
Q Consensus 37 ~~~~ll~~~~~~~~~~a~~~~~~m~---~-~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~-~~p~-~~t~~~li~ 107 (162)
.|+.-++.|-.|++..|...|.... | ++++-|+ |-.++...|+.++|-.+|..+.+.- -.|- +.+.--|-.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6999999888888999999999886 3 2344333 5678888999999999999987642 2221 133445556
Q ss_pred HhhhhccchhhhHHHHHHHHH
Q 045917 108 ASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~ 128 (162)
...+.|+.++|...++.+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 777889999999999998875
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=7 Score=28.33 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=60.1
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh---ccchhhhHHHHHHHHHhcCcchhHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC---LLIGVGGSVHSLIFKVGLHSDKYIGNT 139 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~---~~~~~a~~i~~~~~~~~~~~~~~~~~~ 139 (162)
|...|-.|=..|.+.|+...|..-|++-.+. -.+|...+..+-+++... .+-.++..+++++.+.. +-|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 5667777778888888888888888776542 112233333333333322 23456777777777653 234555555
Q ss_pred HHHHHHhcCChhHHHHhhcccC
Q 045917 140 LLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
|-..+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 6667777888888887777663
No 232
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.77 E-value=6.4 Score=33.06 Aligned_cols=94 Identities=6% Similarity=-0.111 Sum_probs=65.4
Q ss_pred CchhHHHHHHHhhC---CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHc---------CCCCCCc
Q 045917 33 HNTYIISRFILTSL---PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT---------GLRPDNL 100 (162)
Q Consensus 33 ~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~~~ 100 (162)
-|+.|--++++... .|+.+.|.+-.+-++ +-..|..|-+.|.+.++++-|.--+..|.+. ...|+.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e- 801 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE- 801 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc-
Confidence 47788888888544 999999987776655 4457999999999999998888888777543 223432
Q ss_pred cHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 101 TYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 101 t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
+=.-..--....|.+++|+.+++...+.
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~ 829 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY 829 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2112222234678888888888776554
No 233
>PLN02789 farnesyltranstransferase
Probab=88.69 E-value=7.9 Score=28.56 Aligned_cols=118 Identities=5% Similarity=-0.070 Sum_probs=62.4
Q ss_pred HHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc
Q 045917 41 FILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 114 (162)
+-..+. .+..+.|..+.+.+. |+ ...|+.-=..+.+.| +++++++.++++.+..- -+..+|+.---.+.+.|.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCc
Confidence 333344 566677777777665 32 334544433444444 46777777777655322 223334432222233333
Q ss_pred --chhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 115 --IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 115 --~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+++..+...+.+.. +-+..+|+.---++.+.|+++++.+.++++
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 234455555555543 245666666666666677777777766654
No 234
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.18 E-value=1.5 Score=20.87 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
.+++.+-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666667777777777777776653
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.03 E-value=9.7 Score=28.79 Aligned_cols=126 Identities=13% Similarity=0.013 Sum_probs=66.5
Q ss_pred hhHHHHHHHH---hhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC----------CCChHHHHHHhhhhC---CChhH
Q 045917 3 SRQIETLIQL---SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL----------PISLHFTRSLFNNVM---PPLFA 66 (162)
Q Consensus 3 ~~~~~~~l~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~a~~~~~~m~---~~~~~ 66 (162)
...+.-+|.+ .|+-+.|.+++..+....-.+++.++..+-..|- ...++.|...|.+-= ||.++
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 4456666777 6777888888877665566666666665554433 112455555555432 33222
Q ss_pred ---HHHHHHHHHcCCC-chHHHHHH---HHH-HHcC---CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 67 ---YNTLIRAYAKTSC-SIESIKLF---DEM-LKTG---LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 67 ---~~~li~~~~~~~~-~~~a~~~~---~~m-~~~~---~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
+-+++...+.... ..+..++- ..+ .+.| -..|.+.+.++++++.-.|+.++|.+..+.+.+.
T Consensus 262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2223333322111 11222222 121 1223 2345555667777777777777777777777765
No 236
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=87.68 E-value=8.4 Score=27.68 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=77.3
Q ss_pred hHHHHHHHhhC-C-CChHHHHHHhhhhC------C----ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccH-
Q 045917 36 YIISRFILTSL-P-ISLHFTRSLFNNVM------P----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY- 102 (162)
Q Consensus 36 ~~~~~ll~~~~-~-~~~~~a~~~~~~m~------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~- 102 (162)
..+..+=..|- . |+++.|...|++.. . -...+.-+...+.+.|++++|.++|++....-...+..-|
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 34555556676 6 88888888888764 1 2344667778899999999999999998765443332211
Q ss_pred -----HHHHHHhhhhccchhhhHHHHHHHHH--hcCcc--hhHHHHHHHHHHh--cCChhHHHHhhcccC
Q 045917 103 -----PFVVKASDQCLLIGVGGSVHSLIFKV--GLHSD--KYIGNTLLRMYAA--CKEIDFAKALFDEMP 161 (162)
Q Consensus 103 -----~~li~~~~~~~~~~~a~~i~~~~~~~--~~~~~--~~~~~~ll~~y~~--~g~~~~a~~~~~~m~ 161 (162)
-..+-.+...|+...|...++..... ++..+ -.....||.+|-. ...+..|.+-|+.+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 11222344567888888888776542 33222 4456677777764 445566666666654
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.54 E-value=5.6 Score=25.52 Aligned_cols=57 Identities=9% Similarity=-0.071 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 102 YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 102 ~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+...++.....|.-+.-.++...+.+.+ ++++...-.+-.+|.+.|+..++..++.+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4456677788888888888888887643 57888888899999999999999888754
No 238
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=1.9 Score=31.70 Aligned_cols=96 Identities=6% Similarity=-0.049 Sum_probs=70.1
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc---CCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT---GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 138 (162)
....+-...+..-....+++++...+-..+.+ ...|++..+ ++++-|-+ -+.+++..+...-+.-|+-||.++.+
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence 34555666666666678899999888887654 344554433 34444333 24567777777778899999999999
Q ss_pred HHHHHHHhcCChhHHHHhhcc
Q 045917 139 TLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 139 ~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+++.+.+.+++.+|.++.-.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 999999999999999887543
No 239
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.35 E-value=4.7 Score=24.42 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=53.6
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
+-++|..|-+++...+-. .-...||+..+ .|++++|..+.+... ||..+|-++-. .+.|-.++...-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~~~---~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES---EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 456778888888766543 22344555444 899999999999888 99999888744 4556666565556666
Q ss_pred HHcCCCCCCccH
Q 045917 91 LKTGLRPDNLTY 102 (162)
Q Consensus 91 ~~~~~~p~~~t~ 102 (162)
..+|- |...+|
T Consensus 95 a~sg~-p~lq~F 105 (115)
T TIGR02508 95 AASGD-PRLQTF 105 (115)
T ss_pred HhCCC-HHHHHH
Confidence 55543 433434
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.90 E-value=1.8 Score=21.34 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
|..+-..|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555555543
No 241
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.50 E-value=5.3 Score=31.63 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=78.1
Q ss_pred ChHHHHHHhhhhC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHH
Q 045917 49 SLHFTRSLFNNVM------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 49 ~~~~a~~~~~~m~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i 121 (162)
.+.+..++|=++. +|.-....|=-.|.-.|++++|.+-|+...+ ++| |...||-|=-+++...+.++|...
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 3445556665554 4555666666667778999999999999866 556 456689999999999999999999
Q ss_pred HHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHHHHhh
Q 045917 122 HSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 122 ~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
+....+. +|+ +.+.-.|=-+|...|.+++|..-|
T Consensus 487 Y~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 487 YNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9888765 455 555556666788888888887665
No 242
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.22 E-value=8.6 Score=26.32 Aligned_cols=123 Identities=9% Similarity=-0.033 Sum_probs=81.9
Q ss_pred hcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC---CCCCC
Q 045917 29 TSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG---LRPDN 99 (162)
Q Consensus 29 ~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~ 99 (162)
....|+...--.|-.... .|+..+|...|++.- .|....-.+-++....+++..|...++++-+.. -.||
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 345566666666666677 888888888888765 566666666667777788888888888876543 2333
Q ss_pred ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHH
Q 045917 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
+.-.+-..+...|...+|+..|+..... -|+...-...-..+++.|+.++|..
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 3334557777778888888888887764 3554444444455667776666543
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.09 E-value=6.2 Score=28.80 Aligned_cols=112 Identities=10% Similarity=0.087 Sum_probs=67.7
Q ss_pred hhhhcchhHHHHHhc-C--CCchhHHHHHHHhhC---CCChHHHHHHhhhhC------CC-hhHHHHHHHHHHcCCC--c
Q 045917 16 AHHHHQLPALFLKTS-L--DHNTYIISRFILTSL---PISLHFTRSLFNNVM------PP-LFAYNTLIRAYAKTSC--S 80 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~-~--~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~------~~-~~~~~~li~~~~~~~~--~ 80 (162)
...|..+|+.|++.= + .++-+.+..++..-. .-..+.++..|+.+. .| ...-+.++....-..+ .
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v 198 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKV 198 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHH
Confidence 456789999997643 3 355566777776644 222566777777665 23 3444444444333333 4
Q ss_pred hHHHHHHHHHHHcCCCCCCccHHHHH-HHhhhhcc---chhhhHHHHHHHH
Q 045917 81 IESIKLFDEMLKTGLRPDNLTYPFVV-KASDQCLL---IGVGGSVHSLIFK 127 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~~~li-~~~~~~~~---~~~a~~i~~~~~~ 127 (162)
..+.++++.+++.|+++....|+.+- -+....+. .+...++.+.+.+
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 47889999999999999888887652 33333333 3444445555543
No 244
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=14 Score=28.40 Aligned_cols=120 Identities=12% Similarity=0.009 Sum_probs=73.3
Q ss_pred hHHHHHHHhhC---CCChHHHHHHhhhhC---CChhH-------------HHHHHHHHHcCCCchHHHHHHHHHHHc---
Q 045917 36 YIISRFILTSL---PISLHFTRSLFNNVM---PPLFA-------------YNTLIRAYAKTSCSIESIKLFDEMLKT--- 93 (162)
Q Consensus 36 ~~~~~ll~~~~---~~~~~~a~~~~~~m~---~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~m~~~--- 93 (162)
..+...++..+ ..+.+.+..-|++-. |+... |..==+-..+.|++.+|.+.|.+-.+.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 34566666666 788888888888765 44322 222223446689999999999997653
Q ss_pred CCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH--HHHhcCChhHHHHhhc
Q 045917 94 GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR--MYAACKEIDFAKALFD 158 (162)
Q Consensus 94 ~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~--~y~~~g~~~~a~~~~~ 158 (162)
.+.|+...|-..-....+.|+.++|..-.....+-. ...+.-.+.+ ++...++|++|.+-|+
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556555666778888888877665554321 1222222332 4445666666666554
No 245
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.74 E-value=3.6 Score=27.70 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=19.1
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 131 HSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 131 ~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|+..+|..++..+...|+.++|.+...+
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666666666666666666666666554
No 246
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.69 E-value=7.5 Score=25.15 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcC---C--CCCCccHHHHHHHhhhhcc-chhhhHHHHHHHHHhcCcchhHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG---L--RPDNLTYPFVVKASDQCLL-IGVGGSVHSLIFKVGLHSDKYIG 137 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~--~p~~~t~~~li~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~ 137 (162)
..-.|.+++..+..+++...+.+++.+.... + ..+..+|.+++++..+... ---+..++..+.+.+.++++.-|
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy 118 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4558889999898899999999988884321 1 3577889999999977665 34566789999998899999999
Q ss_pred HHHHHHHHhc
Q 045917 138 NTLLRMYAAC 147 (162)
Q Consensus 138 ~~ll~~y~~~ 147 (162)
..++.+..+.
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 9999987765
No 247
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=6 Score=31.05 Aligned_cols=95 Identities=18% Similarity=0.063 Sum_probs=72.4
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc-cHHHHHHHhhhhccchhhhHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL-TYPFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~i 121 (162)
.|+++.|...|-+.. +|.+.|+.=..+|+..|++++|+.=-.+ ...+.|++. -|+-.=.++.-.|++++|..-
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k--~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATK--TRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHH--HHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 899999999999876 7888999999999999999988754333 334667643 356666666667888988888
Q ss_pred HHHHHHHhcCcchhHHHHHHHHH
Q 045917 122 HSLIFKVGLHSDKYIGNTLLRMY 144 (162)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~ll~~y 144 (162)
+..-.+.. +.+...++.|..++
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhh
Confidence 87766543 34577888888888
No 248
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=85.16 E-value=6.6 Score=24.05 Aligned_cols=75 Identities=11% Similarity=0.005 Sum_probs=48.7
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
+.++|..|.+++...+-.- -...+|+..+ .|++++|...=.... ||..+|-++ +-.+.|-.+++..-+..+
T Consensus 21 cH~EA~tIa~wL~~~~~~~---E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEME---EVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTH---HHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 6788999999998877522 2345555444 899999944444444 999999887 446677777777777767
Q ss_pred HHcC
Q 045917 91 LKTG 94 (162)
Q Consensus 91 ~~~~ 94 (162)
-.+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5443
No 249
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.58 E-value=16 Score=28.00 Aligned_cols=117 Identities=13% Similarity=0.046 Sum_probs=76.4
Q ss_pred HHHHHHhhC---CCChHHHHHHhhhhC----CChhHHHHHHHHHHc--CCCchHHHHHHHHHHHcCCCCCCcc--HHHHH
Q 045917 38 ISRFILTSL---PISLHFTRSLFNNVM----PPLFAYNTLIRAYAK--TSCSIESIKLFDEMLKTGLRPDNLT--YPFVV 106 (162)
Q Consensus 38 ~~~ll~~~~---~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t--~~~li 106 (162)
|-+|-.++. .|+-..|.+.=.+-. .|....--++.+-.. .|+.++|.+-|+.|... |...- ...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 445555555 677777777666554 566655555555444 58999999999998753 21111 12233
Q ss_pred HHhhhhccchhhhHHHHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 107 KASDQCLLIGVGGSVHSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 107 ~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
-..-+.|+.+.|.++-+..... .|. ...+..++...|..|+++.|.++.+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3334677777777776665443 233 57788999999999999999998764
No 250
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.42 E-value=1.3 Score=20.65 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHhcCChhHHHH
Q 045917 132 SDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 132 ~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
-+...|..|=..|...|++++|++
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 457888888889999999988863
No 251
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.26 E-value=3 Score=21.27 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=16.8
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCccHHHHH
Q 045917 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 106 (162)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3455555555666665555555555554444
No 252
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.18 E-value=23 Score=29.39 Aligned_cols=118 Identities=12% Similarity=-0.066 Sum_probs=83.6
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc-cHHHHHHHhhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL-TYPFVVKASDQ 111 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~ 111 (162)
|...-..+. .+..++|..-+.+.. -....|.-.=..+...|...+|...|..-.. +.|+.+ ..+++-+.+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHH
Confidence 334444555 777788876666665 2333343333345557888888888877654 556544 46778888888
Q ss_pred hccchhhhH--HHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 112 CLLIGVGGS--VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 112 ~~~~~~a~~--i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.|+-.-+.. +..++.+.+. .+...|-.|=..+-+.|+.+.|-..|+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 998776666 8888888763 568889999999999999999988875
No 253
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.99 E-value=4.6 Score=30.22 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=47.6
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
+-|.+.|++++|.+.|..-.. +.| |.+++..-..+|.+.+.+..|+.=....... -...+.+|++.+.-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHH
Confidence 346778899999988876432 456 8888888888888888888776544433322 23345666655444
Q ss_pred hHHH
Q 045917 151 DFAK 154 (162)
Q Consensus 151 ~~a~ 154 (162)
.+++
T Consensus 175 R~~L 178 (536)
T KOG4648|consen 175 RESL 178 (536)
T ss_pred HHHH
Confidence 4333
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.69 E-value=15 Score=26.86 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=77.7
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C--ChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P--PLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~--~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
++..+|..+++......-.. ...--.+..+|. .|+.+.|..+++.++ . ....-.+-|..+.+.....+..++-
T Consensus 148 e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 45566666666665443222 333445555666 888888888888887 1 1222223344444445555444554
Q ss_pred HHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHH-hcCcchhHHHHHHHHHHhcCChhHH
Q 045917 88 DEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKV-GLHSDKYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 88 ~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~ll~~y~~~g~~~~a 153 (162)
++.-.. | |...=-.+...+...|+.+.|.+.+-.+.+. .-.-|...-..|+..+...|..|-+
T Consensus 227 ~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 227 RRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 444332 4 3333344566777778888777655444332 2234667778888888888865543
No 255
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=7.7 Score=30.50 Aligned_cols=51 Identities=14% Similarity=-0.059 Sum_probs=33.6
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHH
Q 045917 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~ 124 (162)
.+.+.|++..|+.-|.++.... +-|...|+.-.-+|.+.|.+..|..=...
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455678888888888776554 44566677777777777777666554333
No 256
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.41 E-value=7.1 Score=24.75 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
..+.++....-++.|++-....-+.+|-+.+++..|..+++.+..+ +.+...+|-.+++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 3345555666678888888888888888888888888888777543 2233334554443
No 257
>PF13934 ELYS: Nuclear pore complex assembly
Probab=82.92 E-value=13 Score=25.86 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=62.2
Q ss_pred HhcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccH
Q 045917 28 KTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102 (162)
Q Consensus 28 ~~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 102 (162)
..++++. +...+++|- .++++.|.+.+-+-. |+. ..-++..+...|+.+.|+.+++.+.-..-.+ ...
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~ 144 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELLSHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSP--EAL 144 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHH
Confidence 4444444 677777777 777888887775533 221 2247788888899999999988764221111 222
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
..++.. ..++.+.+|....+...... ....+..++....
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 333344 44567777776655443311 1345666666555
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.69 E-value=19 Score=27.41 Aligned_cols=111 Identities=13% Similarity=0.081 Sum_probs=71.0
Q ss_pred CCChHHHHHHhhhhC-------------------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 47 PISLHFTRSLFNNVM-------------------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
.|++..|...|+... .-..+++.+..+|.+.+++..|+.-...-+..+- +|.-..--==.
T Consensus 221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~ 299 (397)
T KOG0543|consen 221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQ 299 (397)
T ss_pred hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHH
Confidence 677777777766532 3355678888889999999999988888765321 22222222235
Q ss_pred HhhhhccchhhhHHHHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHH-HHhhccc
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFA-KALFDEM 160 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a-~~~~~~m 160 (162)
++...|+++.|+..|..+.+.. |+ ..+-+-|+.+--+..+.... .++|.+|
T Consensus 300 A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 300 ALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777889999999999988863 44 44444555555554444433 5555544
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.47 E-value=4.7 Score=24.19 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=37.7
Q ss_pred chhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 115 ~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.-+.++-...+......|++.+..+-++++-+.+++..|.++|+-.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3345555666666678999999999999999999999999999854
No 260
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=82.39 E-value=27 Score=28.97 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=66.6
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC----CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL----PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
.+++..-+....-.+++.++.++..+...+. .++.+++ .+.-.+. |.-..+.+.+. -+..+
T Consensus 243 ~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ils----------lm~~~ 311 (799)
T KOG4162|consen 243 PKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIPRENIEDAILS----------LMLLL 311 (799)
T ss_pred chHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhccccccHHHHHHH----------HHHHH
Confidence 3444445555555666777777777666554 5556655 2222211 22122222111 01223
Q ss_pred HHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 88 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+++....+.-|...|-.+--+....|+++.+-+.|+.....-+ .....|..+-..|+.+|.-..|..+.+
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3333334445555566666666666666666666665544322 344556666666666666666655544
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.06 E-value=11 Score=29.13 Aligned_cols=83 Identities=10% Similarity=-0.028 Sum_probs=61.5
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
..++..|..|=+... .|+++-|+..|.... -|..++-.|.-.|+.+.-.++-+.-...|- ++..+.++.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~ 413 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK----DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAAL 413 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHH
Confidence 457889999999999 999999999999977 677778888888988777777666554432 666777777
Q ss_pred hhccchhhhHHHHH
Q 045917 111 QCLLIGVGGSVHSL 124 (162)
Q Consensus 111 ~~~~~~~a~~i~~~ 124 (162)
-.|+.++..+++..
T Consensus 414 ~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 414 LLGDVEECVDLLIE 427 (443)
T ss_dssp HHT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 77887777666543
No 262
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.60 E-value=1.7 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 117 ~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+.++-+..+......|++.+..+.|+++.+.+++..|.++|+-.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444445555567899999999999999999999999999754
No 263
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=81.25 E-value=15 Score=25.22 Aligned_cols=115 Identities=8% Similarity=0.039 Sum_probs=62.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C---ChhHHHHHHHHHHcCC
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P---PLFAYNTLIRAYAKTS 78 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~---~~~~~~~li~~~~~~~ 78 (162)
+...+...|+..+|...|++...--+..|+...-.+-+... .+++..|...+++.- | ++.+.-.+-+.|+..|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 34445555666666666666655555566555555555555 666666666666543 1 2223334445566666
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
+..+|..-|+.... .-|+...-.-.-..+.+.|+..++..=.
T Consensus 175 ~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 175 KYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred CchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 66666666666544 3344444333444455555555554433
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.87 E-value=22 Score=26.81 Aligned_cols=145 Identities=9% Similarity=-0.061 Sum_probs=83.6
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CCh--hHHHHHHH--HHHcCCCchHH
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPL--FAYNTLIR--AYAKTSCSIES 83 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~--~~~~~li~--~~~~~~~~~~a 83 (162)
.|...+|-..|+++++- .|.|-..++.--++|+ .|+.+.-...++.+. +|. ++|-.-|. ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34555666666666543 5666677777777888 888877777777765 444 23333333 33346888888
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH---HhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK---VGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~---~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+.-++-.+-+ +.|...-.+....+-..|++.++.+...+-.. .+.-.-..-|.-.--.|...+.++.|+.+||.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 87766654321 22344445555555556677777665433211 11111122344444556677889999888874
No 265
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.67 E-value=3.2 Score=18.75 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc
Q 045917 136 IGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 136 ~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+|..+=..|...|++++|.+.|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456667788889999999888765
No 266
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.13 E-value=2.9 Score=30.44 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=28.3
Q ss_pred CChhH-HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccH
Q 045917 62 PPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTY 102 (162)
Q Consensus 62 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 102 (162)
|++.+ ||.-|....+.||+++|+.+++|-++.|++--..||
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44333 677777778888888888888888777776544444
No 267
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=79.93 E-value=16 Score=24.80 Aligned_cols=55 Identities=9% Similarity=-0.065 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 102 YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 102 ~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
|..+++-+-.+....+|......+...-- ..--.+-+.|.+.|.+..|..-|+.+
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~la----~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNRLA----EHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHHHH----HHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44445555554444555444443332210 11122456778888888777666543
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=36 Score=28.71 Aligned_cols=75 Identities=20% Similarity=0.145 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
.|++++|..-|-+-... ++| +.+|.-+-+...+..--.+.+.+.+.|+. +...-+.|+++|.|.++.++-.++
T Consensus 381 Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred cCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 45555555555443211 222 12344444444444444444555555542 333335555556555555554444
Q ss_pred hc
Q 045917 157 FD 158 (162)
Q Consensus 157 ~~ 158 (162)
.+
T Consensus 454 I~ 455 (933)
T KOG2114|consen 454 IS 455 (933)
T ss_pred Hh
Confidence 33
No 269
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.51 E-value=23 Score=29.73 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=13.6
Q ss_pred HHHhcCChhHHHHhhcccC
Q 045917 143 MYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 143 ~y~~~g~~~~a~~~~~~m~ 161 (162)
.+-..|++++|.+.+..+|
T Consensus 499 lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 499 LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcCHHHHHHHHhcCC
Confidence 3345788888888887765
No 270
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.46 E-value=15 Score=25.29 Aligned_cols=82 Identities=10% Similarity=-0.073 Sum_probs=57.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH---hcCcchhHHHHHHHHHHhc
Q 045917 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV---GLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~---~~~~~~~~~~~ll~~y~~~ 147 (162)
.-...+.|+ +.|.+.|-++...+..-+...-..|...|. ..+..++.+++....+. +-.+|+..+.+|...|-+.
T Consensus 114 Yy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 114 YYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 334444454 668888888877766555554555555554 56778888877666542 2267889999999999999
Q ss_pred CChhHHH
Q 045917 148 KEIDFAK 154 (162)
Q Consensus 148 g~~~~a~ 154 (162)
|+.+.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9999885
No 271
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=32 Score=27.98 Aligned_cols=97 Identities=12% Similarity=-0.071 Sum_probs=63.2
Q ss_pred CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 47 PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
.|+++.|..+-.+. -+..-|..|=.+..+.|++..|.+-|..-.+ |..|+-.+...|+.+....+-....
T Consensus 650 lgrl~iA~~la~e~-~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEA-NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred cCcHHHHHHHHHhh-cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 46666665554443 3556788888888888999988888776543 4556666666666665555555555
Q ss_pred HHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 127 ~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+.|. .|.-.-+|-..|+++++.+++.+
T Consensus 720 ~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 5543 23344567778888888887654
No 272
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=79.20 E-value=7.4 Score=23.74 Aligned_cols=27 Identities=11% Similarity=-0.079 Sum_probs=20.1
Q ss_pred cHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 101 TYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 101 t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
-|..|+.-|...|..++|.+++..+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777777777777777777665
No 273
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.79 E-value=15 Score=25.24 Aligned_cols=70 Identities=7% Similarity=-0.084 Sum_probs=50.9
Q ss_pred ChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc---CCCCCCccHHHHHHHhhhhccchhh
Q 045917 49 SLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT---GLRPDNLTYPFVVKASDQCLLIGVG 118 (162)
Q Consensus 49 ~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~li~~~~~~~~~~~a 118 (162)
.-+.|.+.|=.++ .+......-+..|....+.+++..++.+..+. +-.+|+..+.+|...+-+.|+.+.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4456777777776 34455555666666678899999998887653 3367888888899988888888766
No 274
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=78.05 E-value=35 Score=29.53 Aligned_cols=23 Identities=4% Similarity=-0.197 Sum_probs=16.9
Q ss_pred chhHHHHHHHhhC-CCChHHHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSL 56 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~ 56 (162)
+...+..+.+.|. ..+++.|..+
T Consensus 525 daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHH
Confidence 3455677778888 8888888776
No 275
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.59 E-value=16 Score=24.58 Aligned_cols=52 Identities=10% Similarity=-0.188 Sum_probs=25.5
Q ss_pred cCCCchHHHHHHHHHHH-cCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 76 KTSCSIESIKLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
...+.+......+...+ ....|+...|..++..+...|+.++|++....+..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444433333333322 23445555555555555556666666555555444
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=77.19 E-value=8.9 Score=25.60 Aligned_cols=60 Identities=3% Similarity=-0.123 Sum_probs=46.3
Q ss_pred ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD--KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+..+.+.|++.|+.+.|.+.+..+......+. ...+-.+|+...-.|+++.+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3466788999999999999999999887654333 45567788888888888877766543
No 277
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.00 E-value=4.5 Score=20.29 Aligned_cols=20 Identities=5% Similarity=-0.137 Sum_probs=9.3
Q ss_pred HHhhhhccchhhhHHHHHHH
Q 045917 107 KASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 107 ~~~~~~~~~~~a~~i~~~~~ 126 (162)
.+|...|+.+.|+.+.+.+.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 278
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=76.97 E-value=2.6 Score=25.93 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=24.4
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhc
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTS 30 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~ 30 (162)
+++..|.+|...++|.++.++|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 67889999999999999999999998
No 279
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.96 E-value=15 Score=22.96 Aligned_cols=41 Identities=5% Similarity=0.115 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 117 VGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 117 ~a~~i~~~~~~~~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
.+..+|..|..+|+- -....|...-..+.+.|++.+|.+||
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444441 22334444444444555555555544
No 280
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.85 E-value=6.9 Score=21.16 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
.=-+|.+|...|++++|.+..+++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345566666666666666555543
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=76.78 E-value=17 Score=23.39 Aligned_cols=120 Identities=14% Similarity=0.036 Sum_probs=76.1
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHH------HHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTL------IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~l------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
+++.++...- .++...++.-.+.-.|+...+..- --+++..|+++.|++.|.+-... .+-+...||.-..++
T Consensus 9 vln~i~npl~~t~~~~~aE~~lede~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~ 87 (175)
T KOG4555|consen 9 VLDSIFNPLELTNNLIPAESDLKDEEPDTQAIKASRELELKAIALAEAGDLDGALELFGQALCL-APERASAYNNRAQAL 87 (175)
T ss_pred HHcccCCcccccccccchhhhhcccCCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHH
Confidence 3444444444 555556665555444433333221 12456789999999999887654 334667789989998
Q ss_pred hhhccchhhhHHHHHHHH-HhcCcchhHHHHHHH---HHHhcCChhHHHHhhc
Q 045917 110 DQCLLIGVGGSVHSLIFK-VGLHSDKYIGNTLLR---MYAACKEIDFAKALFD 158 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~ll~---~y~~~g~~~~a~~~~~ 158 (162)
.-.|+.++|..=.....+ .|-+ +...+.+.+. .|-..|+.|.|..-|+
T Consensus 88 RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~dd~AR~DFe 139 (175)
T KOG4555|consen 88 RLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGNDDAARADFE 139 (175)
T ss_pred HHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCchHHHHHhHH
Confidence 888888888776666554 3432 4444444443 5677888888887765
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.75 E-value=4.9 Score=17.99 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc
Q 045917 136 IGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 136 ~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|..+=.+|...|++++|.+.|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455566778888888888888765
No 283
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=76.56 E-value=18 Score=23.39 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=56.8
Q ss_pred hhHHHHHHHhhCCCChHHHHHHhhhhC---C----ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 35 TYIISRFILTSLPISLHFTRSLFNNVM---P----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~a~~~~~~m~---~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
...|+.-...+-.|++++|.+.|+.+. | ....-=-++.+|.+.+++++|...+++-.+..-..-..-|-..+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344555555555899999999999887 2 344555688889999999999999999776554444466777777
Q ss_pred Hhhhhc
Q 045917 108 ASDQCL 113 (162)
Q Consensus 108 ~~~~~~ 113 (162)
+++...
T Consensus 91 gL~~~~ 96 (142)
T PF13512_consen 91 GLSYYE 96 (142)
T ss_pred HHHHHH
Confidence 776543
No 284
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.19 E-value=28 Score=25.50 Aligned_cols=109 Identities=6% Similarity=-0.089 Sum_probs=77.6
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.+++.+|..+|+... -+...--.+..+|...|+++.|..++..+...--.........-|+.+.+.....+...+.
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 899999999999876 3445566678889999999999999998865433333333344456666666666666666
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
...... +-|...--.|-..|.-.|+.+.|.+.+
T Consensus 227 ~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 227 RRLAAD--PDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 665543 225666677888888888888887654
No 285
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=75.71 E-value=11 Score=25.76 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=44.2
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHhc--------------CcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFKVGL--------------HSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~~~~--------------~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+++..|-+.-.+.+++++.+.+.+..+ .+.-.+.|.-...|.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3456677788889999999888866542 34445568888999999999999999875
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.93 E-value=23 Score=24.00 Aligned_cols=126 Identities=11% Similarity=-0.043 Sum_probs=67.2
Q ss_pred hhHHHHHHHhhCCCChHHHHHHhhhhC-CChhHHHHHH-----HHHHcCCCchHHHHHHHHHHHcCCCCCCc-cHHHHHH
Q 045917 35 TYIISRFILTSLPISLHFTRSLFNNVM-PPLFAYNTLI-----RAYAKTSCSIESIKLFDEMLKTGLRPDNL-TYPFVVK 107 (162)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~a~~~~~~m~-~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~li~ 107 (162)
...|-..++.-..++.++|+.-|.+.+ ...-.|-.|- ......|+...|...|++.-...-.|-.. -..-|=.
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 344555554434677788888888877 2222233221 23455688888888888876544434322 1111111
Q ss_pred --HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 108 --ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 108 --~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+...|.+++...-.+-+...+-......-..|=-+=-+.|++.+|.+.|+.+
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 12344555555555444443333333333344444445788888888888754
No 287
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.77 E-value=20 Score=23.11 Aligned_cols=61 Identities=10% Similarity=-0.057 Sum_probs=29.9
Q ss_pred HHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC
Q 045917 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 88 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~ 149 (162)
..+++.|++++..= ..+++.....++.-.|+.++..+.+.+...+..|.=.-|+.+...|-
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33444555443321 23444555554556666666666665544444444344455555443
No 288
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=73.91 E-value=12 Score=21.87 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=33.9
Q ss_pred chhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 21 QLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
++|+.....|+..|+..|..+++..- +--.+....+++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 78888888899999999998888888 777777777777775
No 289
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=73.56 E-value=21 Score=25.48 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=55.9
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhh----------------C-CChhHHHHHHHHHHcCCCchHH
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNV----------------M-PPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m----------------~-~~~~~~~~li~~~~~~~~~~~a 83 (162)
+....+..+++-+.....+++ +. .|+..+|...++.- - |.+.....++..+.+ +++++|
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A 257 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEA 257 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHH
Confidence 344445556655544444333 22 66766666655532 2 777777788877654 789999
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 84 IKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
.+++++..+.|..|... .+++++.+-
T Consensus 258 ~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 258 LKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred HHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 99999999999988654 556666653
No 290
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=73.10 E-value=15 Score=30.09 Aligned_cols=58 Identities=7% Similarity=0.197 Sum_probs=45.8
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC---CChh-----------HHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM---PPLF-----------AYNTLIRAYAKTSCSIESIKLFDEMLKTGLR 96 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~---~~~~-----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 96 (162)
.++++... .+++++|+++-+..+ ||++ -|...=.+|.+.|+-.+|..+++++-+..+.
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 56788888 999999999988877 4433 2556667899999999999999998765543
No 291
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.04 E-value=4.6 Score=23.31 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhc-CCC
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTS-LDH 33 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~~ 33 (162)
-++...|..|..-++|.++.+++.++| +.|
T Consensus 35 PtV~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 35 PTVIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 467889999999999999999999988 444
No 292
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.94 E-value=36 Score=24.46 Aligned_cols=49 Identities=12% Similarity=-0.111 Sum_probs=26.9
Q ss_pred HhhhhccchhhhHHHHHH---HHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 108 ASDQCLLIGVGGSVHSLI---FKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~---~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
.+....++..++..++.- ....-.-+..+...||.+| ..|+.|.+..|.
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 333444566666666552 2222233456667777776 456777766654
No 293
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=70.77 E-value=33 Score=25.43 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH----------hcCChh
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA----------ACKEID 151 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~----------~~g~~~ 151 (162)
.-.++|+.|.+.++.|..+.|..+.-.+.+.=.+.++..+++.+.... .-+..|+..+| -.|++.
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 346889999999999999998877777777767888888888876532 22555555554 367777
Q ss_pred HHHHhhcc
Q 045917 152 FAKALFDE 159 (162)
Q Consensus 152 ~a~~~~~~ 159 (162)
..+++++.
T Consensus 336 ~nmkLLQ~ 343 (370)
T KOG4567|consen 336 VNMKLLQN 343 (370)
T ss_pred HHHHHHhc
Confidence 77777654
No 294
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.79 E-value=40 Score=24.56 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=70.9
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHc---CCCchHHHHHHHHHHHcCCCCCCcc-H
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAK---TSCSIESIKLFDEMLKTGLRPDNLT-Y 102 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t-~ 102 (162)
+-|.-.|-.|=..|. .|++..|..-|.... ++...+..+-.++.. .....++..+|++... ..|+..+ -
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHH
Confidence 446778888888999 999999999999886 455554444444433 3566788899999876 3444443 3
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
..|--.+...|++.+|...++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 445567788999999999999999874
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.57 E-value=3.2 Score=18.45 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=14.8
Q ss_pred HHHHHHhcCChhHHHHhhccc
Q 045917 140 LLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~m 160 (162)
+-.+|.+.|++++|.+.|++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 345666778888888877654
No 296
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=68.85 E-value=14 Score=22.49 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccch
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~ 116 (162)
++..+...+..-.|.++++++++.+..++..|.-..++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555666678888888877776677777666666666665543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.73 E-value=9.8 Score=17.08 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
+|..+=..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555566666666666666666543
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.17 E-value=32 Score=22.73 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=51.2
Q ss_pred hchhhhcchhHHHHHhcCC-CchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHH-
Q 045917 14 KTAHHHHQLPALFLKTSLD-HNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLF- 87 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~- 87 (162)
++..+++.+++-++..... +...++...+ +. .|++.+|.++|+++. |....-.+|+..|.... -+...+.+
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~-~D~~Wr~~A 100 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL-GDPSWRRYA 100 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc-CChHHHHHH
Confidence 4677888888887665433 2222232222 23 899999999999998 44444445554444432 22223333
Q ss_pred HHHHHcCCCCCCccHHHHHHHhhhhccch
Q 045917 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIG 116 (162)
Q Consensus 88 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~ 116 (162)
++..+.+-.|+.. .+++.+-...+..
T Consensus 101 ~evle~~~d~~a~---~Lv~~Ll~~~~~~ 126 (160)
T PF09613_consen 101 DEVLESGADPDAR---ALVRALLARADLE 126 (160)
T ss_pred HHHHhcCCChHHH---HHHHHHHHhcccc
Confidence 3344444444332 3444444433333
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=67.99 E-value=39 Score=26.75 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=43.9
Q ss_pred HHHHHhcCCCchhHHHHHHHhhC--CCChHHHHHHhhhhC---C---ChhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 24 ALFLKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVM---P---PLFAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~a~~~~~~m~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
+....+...|-.++-.. +..|+ .|+.++|.+.|+++- | .......+|.++...+...++..++.+-.
T Consensus 248 e~~~~Rdt~~~~y~KrR-LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRR-LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhccccchhhhhHHH-HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33333333343444333 45555 888888888888885 3 23456678888888888888888888764
No 300
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.74 E-value=58 Score=25.63 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=59.2
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-C---ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-P---PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
...|+.-|. .|++.+|.+-.++.. | .-+.+.+++.+.-+.|+....++++++....| ..|.+.+-++|.+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhh
Confidence 456788888 999999999999887 3 47789999999999999998889988887765 45677788887775
Q ss_pred c
Q 045917 113 L 113 (162)
Q Consensus 113 ~ 113 (162)
.
T Consensus 588 ~ 588 (645)
T KOG0403|consen 588 Y 588 (645)
T ss_pred h
Confidence 4
No 301
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.55 E-value=43 Score=23.97 Aligned_cols=129 Identities=13% Similarity=0.074 Sum_probs=78.0
Q ss_pred CCchhHHHHHHHhhCCCChHHHHHHhhhhC---C----ChhHHHHHHHHHHcCCCchHHHHHHHHHHH-cCCCCCCccHH
Q 045917 32 DHNTYIISRFILTSLPISLHFTRSLFNNVM---P----PLFAYNTLIRAYAKTSCSIESIKLFDEMLK-TGLRPDNLTYP 103 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~---~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~t~~ 103 (162)
.|-...|+-.+..+-.|++++|.+-|+.+. | ...+--.++-++-+.++.++|....++-.+ .+-.|| ..|-
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 345566777777766899999999999887 2 244455567778889999999999999654 344444 3355
Q ss_pred HHHHHhhhh-------ccchhhhHHHHHH---HHH----hcCcchhHH------------HHHHHHHHhcCChhHHHHhh
Q 045917 104 FVVKASDQC-------LLIGVGGSVHSLI---FKV----GLHSDKYIG------------NTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 104 ~li~~~~~~-------~~~~~a~~i~~~~---~~~----~~~~~~~~~------------~~ll~~y~~~g~~~~a~~~~ 157 (162)
..|.+.+.. .+-..+...+..+ ... ...||...- -.+-+-|.+.|.+..|..-|
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 556655543 2222333333333 221 122332221 23455677788877777766
Q ss_pred cccC
Q 045917 158 DEMP 161 (162)
Q Consensus 158 ~~m~ 161 (162)
++|.
T Consensus 191 ~~v~ 194 (254)
T COG4105 191 EEVL 194 (254)
T ss_pred HHHH
Confidence 6653
No 302
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.31 E-value=9.1 Score=24.29 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 117 ~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
+..+....+..-.+.|++.+...-++++-+-+++..|.++|+-++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344445555566778999999999999999999999999998654
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.93 E-value=22 Score=23.21 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=38.1
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCC---ccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 75 AKTSCSIESIKLFDEMLKTGLRPDN---LTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
...+++.++..+++.|.- +.|+. .+|-..+ +...|++.+|..+++.+...+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 347899999999999965 44544 4444444 457899999999999998765
No 304
>PHA02940 hypothetical protein; Provisional
Probab=66.72 E-value=44 Score=23.84 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH
Q 045917 68 NTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 68 ~~li~~~~~~~~~~~a~~~~~~m 90 (162)
..+...|++.++.++-..+-+++
T Consensus 146 ~~la~~yvq~vk~d~r~~~a~~l 168 (315)
T PHA02940 146 ILLAGRYVQDVKKDDRRTIANKL 168 (315)
T ss_pred HHHHHHHHHHccccHHHHHHHHH
Confidence 34455555555555444443333
No 305
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=66.65 E-value=13 Score=22.79 Aligned_cols=48 Identities=10% Similarity=-0.071 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCCh
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISL 50 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~ 50 (162)
+..++.++......-.|.++++.+.+.+...+..|.=.-|+.+. .|-+
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45677888888777789999999998888777665444445444 5443
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.36 E-value=37 Score=25.05 Aligned_cols=55 Identities=13% Similarity=-0.023 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i 121 (162)
+++..-+.|..+|.+.+|..+-+...+.. +.+...+-.++..+...|+--.+.+-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhH
Confidence 34455556666777777777666654321 12334445566666666664444433
No 307
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=66.23 E-value=56 Score=24.87 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=50.1
Q ss_pred HHHHhhC-CCChHHHHHHhhhhC--CCh------hHHHHHHHHHHc---CCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 40 RFILTSL-PISLHFTRSLFNNVM--PPL------FAYNTLIRAYAK---TSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 40 ~ll~~~~-~~~~~~a~~~~~~m~--~~~------~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
.++-+|- ..+++...++.+.++ |+. ..---..-++.+ .|+.++|++++.......-.++..||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566 899999999999998 321 111122334444 7999999999999877777788888877655
Q ss_pred Hhh
Q 045917 108 ASD 110 (162)
Q Consensus 108 ~~~ 110 (162)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 544
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=65.92 E-value=37 Score=22.61 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=63.5
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH-hcCcchhHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV-GLHSDKYIGNTL 140 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~l 140 (162)
|+...|..+|..+.+.|++. .+..+.+.++-+|+......+-.+.. ....+.++--+|.++ + ..+..+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~i 95 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEI 95 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHH
Confidence 78889999999999998754 56667788888888888766654443 345566665555543 2 245667
Q ss_pred HHHHHhcCChhHHHHhhcc
Q 045917 141 LRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 141 l~~y~~~g~~~~a~~~~~~ 159 (162)
++.+...|++-+|.+...+
T Consensus 96 ievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 7888889999999988754
No 309
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=65.83 E-value=33 Score=22.13 Aligned_cols=21 Identities=0% Similarity=-0.034 Sum_probs=10.3
Q ss_pred HHHHhhC-CCChHHHHHHhhhh
Q 045917 40 RFILTSL-PISLHFTRSLFNNV 60 (162)
Q Consensus 40 ~ll~~~~-~~~~~~a~~~~~~m 60 (162)
-|+.+|. .++++.|...+++.
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 3334444 55555555555544
No 310
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=65.22 E-value=37 Score=22.46 Aligned_cols=35 Identities=3% Similarity=-0.126 Sum_probs=13.9
Q ss_pred HHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 26 FLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
++..|+.+++.= .+++..+. ....-.|..+++.+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~ 52 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLR 52 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHH
Confidence 344454443321 23333333 333334444444443
No 311
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.71 E-value=35 Score=21.97 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=16.1
Q ss_pred hHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 23 PALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
...+++.|+++++. -..+++.+. .++.-.|+.+++++.
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~ 47 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELR 47 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34444555544431 233333333 333344555555444
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.70 E-value=21 Score=25.16 Aligned_cols=79 Identities=13% Similarity=-0.012 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH--hcCcchhHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV--GLHSDKYIGNTLLRM 143 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~ll~~ 143 (162)
|.+.-++.+.+.+.+.+++.+.++-.+. -+.|..+=..+++-+|-.|++++|..=.+-..+. ...+-..+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4456677888889999999888876554 2234555567899999999999997655554432 234556778777776
Q ss_pred HH
Q 045917 144 YA 145 (162)
Q Consensus 144 y~ 145 (162)
-+
T Consensus 82 ea 83 (273)
T COG4455 82 EA 83 (273)
T ss_pred HH
Confidence 44
No 313
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.67 E-value=33 Score=28.51 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
+.+--+.-+...|+.++|.++-++-+ .||..-|-.=+.+++..+++++-++.-.. ...+.-|...+..+.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks------kksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS------KKSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc------cCCCCCchhHHHHHH
Confidence 34455666777888888888865553 38888887888888888888876655322 234688999999999
Q ss_pred hcCChhHHHHhhccc
Q 045917 146 ACKEIDFAKALFDEM 160 (162)
Q Consensus 146 ~~g~~~~a~~~~~~m 160 (162)
+.|+.++|.+.+.+.
T Consensus 756 ~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRV 770 (829)
T ss_pred hcccHHHHhhhhhcc
Confidence 999999999887654
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=64.49 E-value=1e+02 Score=27.30 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChhHHHHhh
Q 045917 138 NTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 138 ~~ll~~y~~~g~~~~a~~~~ 157 (162)
.-.+..|++...+++|.++-
T Consensus 1030 ~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1030 EEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHhhHhHHHHHHHHH
Confidence 34556777777788777764
No 315
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.35 E-value=13 Score=27.19 Aligned_cols=46 Identities=11% Similarity=-0.027 Sum_probs=36.2
Q ss_pred CCCCCCccH-HHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHH
Q 045917 94 GLRPDNLTY-PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139 (162)
Q Consensus 94 ~~~p~~~t~-~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 139 (162)
.+.|+..+| +.-|+...+.||+++|.++.++..+.|+..-..++-.
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 345666665 6899999999999999999999999998654444433
No 316
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=64.30 E-value=83 Score=26.15 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=24.1
Q ss_pred hHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 23 PALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
++.++++|-.|+.... -..++ .|++.+|-++|.+-.
T Consensus 623 L~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred HHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcC
Confidence 3456677777775332 23445 899999999988754
No 317
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=64.00 E-value=25 Score=20.58 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++|+-....|+..|+.++..+++...-+--.+...+++.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK 67 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLK 67 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344444445555555555555555444444444444443
No 318
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=63.59 E-value=19 Score=21.81 Aligned_cols=49 Identities=8% Similarity=-0.092 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChH
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLH 51 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~ 51 (162)
+..++.++......-.|.++++.+.+.+..++..|.-..|+.+. .|-+.
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45566777766666678889999988887777666555566555 55443
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.83 E-value=11 Score=15.54 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc
Q 045917 136 IGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 136 ~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|..+-..|...|+++.|...|.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555666667777777766543
No 320
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=62.77 E-value=45 Score=22.60 Aligned_cols=140 Identities=9% Similarity=0.033 Sum_probs=79.8
Q ss_pred HhhchhhhcchhHHHHHhcCC-C-chhHHHHHHHhhC-CCChHHHHHHhhhhC---CC--hhHHHHHHHHHHc-------
Q 045917 12 LSKTAHHHHQLPALFLKTSLD-H-NTYIISRFILTSL-PISLHFTRSLFNNVM---PP--LFAYNTLIRAYAK------- 76 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~--~~~~~~li~~~~~------- 76 (162)
..|+..+|.+.++.+...-.. | .+...-.+..++. .|+.+.|...++++. |+ ...+-..+.+.+.
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence 347889999999998765322 2 2333444555666 999999999999876 43 2223322222221
Q ss_pred ------CCCchHHHHHHHHHHHcCCCCCCccHH------------------HHHHHhhhhccchhhhHHHHHHHHHhcCc
Q 045917 77 ------TSCSIESIKLFDEMLKTGLRPDNLTYP------------------FVVKASDQCLLIGVGGSVHSLIFKVGLHS 132 (162)
Q Consensus 77 ------~~~~~~a~~~~~~m~~~~~~p~~~t~~------------------~li~~~~~~~~~~~a~~i~~~~~~~~~~~ 132 (162)
.+...+|...|++..+. -|++.-.. .+.+.|.+.|.+..|..-+..+.+. . |
T Consensus 97 ~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-y-p 172 (203)
T PF13525_consen 97 LRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN-Y-P 172 (203)
T ss_dssp H-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-S-T
T ss_pred hhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-C-C
Confidence 12334566666666543 13322111 1234566678888888888887775 2 3
Q ss_pred c----hhHHHHHHHHHHhcCChhHHHH
Q 045917 133 D----KYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 133 ~----~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
+ ....-.++.+|-+.|..+.|..
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 3 2345678889999998885543
No 321
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=62.01 E-value=21 Score=24.40 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=33.9
Q ss_pred CCChHHHHHHhhhhC-------CChhHHHHHHH-HHHcC--CCchHHHHHHHHHHHcCCCCCC----ccHHHHHHHhh
Q 045917 47 PISLHFTRSLFNNVM-------PPLFAYNTLIR-AYAKT--SCSIESIKLFDEMLKTGLRPDN----LTYPFVVKASD 110 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-------~~~~~~~~li~-~~~~~--~~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~ 110 (162)
.|++++|..-++.+. .-...|+.+.. +++.+ ..+.+|.-+|.-.... ..|+. +.+...|.+.+
T Consensus 42 ~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~~YilGl~ 118 (204)
T COG2178 42 RGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPIAYILGLA 118 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHHHHHHHHH
Confidence 677777777777665 23445666666 55554 3455555555555443 33332 34444555544
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.84 E-value=54 Score=23.19 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=40.4
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc--CCCCCCccHHHHHHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT--GLRPDNLTYPFVVKA 108 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~ 108 (162)
.+.+.++....++-. .|.-.-..++..|+-.|++++|..=++-.-+. ...+-..+|..+|.+
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 466666666655443 56777888999999999999998766554331 233344555555554
No 323
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.70 E-value=23 Score=20.35 Aligned_cols=18 Identities=6% Similarity=-0.178 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcCChhHHH
Q 045917 137 GNTLLRMYAACKEIDFAK 154 (162)
Q Consensus 137 ~~~ll~~y~~~g~~~~a~ 154 (162)
...|+.+|+..|.++++.
T Consensus 46 lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 324
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.54 E-value=22 Score=19.50 Aligned_cols=49 Identities=10% Similarity=-0.141 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 97 PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 97 p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
|...-++.+++..++-..++++........+.|. .+..+|-.-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555543 344444444444443
No 325
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.35 E-value=24 Score=22.23 Aligned_cols=43 Identities=7% Similarity=0.152 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHhcC-cchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 116 GVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 116 ~~a~~i~~~~~~~~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++...+|..|.++|+- .....|...-..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456677777777662 224456666666667777777777765
No 326
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=60.82 E-value=25 Score=21.51 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=20.1
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
++......+..-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555555555555554444444444444444443
No 327
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.49 E-value=39 Score=21.13 Aligned_cols=73 Identities=14% Similarity=0.072 Sum_probs=49.6
Q ss_pred hHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHHH
Q 045917 50 LHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 50 ~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~~ 124 (162)
++.+.+.|..-+ .|-.-|--+--.|+..- .++.++|..|...|+-....- |......+...|++.+|.+|+..
T Consensus 49 Ler~~~~f~~~~~Y~nD~RylkiWi~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 49 LERCIRKFKDDERYKNDERYLKIWIKYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555554443 44455555555566643 399999999999998665544 56777888889999999999865
No 328
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.14 E-value=55 Score=24.73 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=7.3
Q ss_pred ChHHHHHHhhhh
Q 045917 49 SLHFTRSLFNNV 60 (162)
Q Consensus 49 ~~~~a~~~~~~m 60 (162)
.+.+|+++|+..
T Consensus 231 Ti~~AE~l~k~A 242 (556)
T KOG3807|consen 231 TIVDAERLFKQA 242 (556)
T ss_pred hHHHHHHHHHHH
Confidence 455666666654
No 329
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.80 E-value=36 Score=26.02 Aligned_cols=88 Identities=8% Similarity=-0.096 Sum_probs=59.1
Q ss_pred HHHcCCCchHHHHHHHHHHHc-----CCC---------CCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHH
Q 045917 73 AYAKTSCSIESIKLFDEMLKT-----GLR---------PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGN 138 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~-----~~~---------p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 138 (162)
.|.+.|++..|..-|+..... +.. .-...+..+.-.+.+.+++..|.+........+. +|+...-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 566778888888887764321 111 1233456677778888899988888877776642 3443332
Q ss_pred HHHHHHHhcCChhHHHHhhcccC
Q 045917 139 TLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 139 ~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
-==.+|...|+++.|+..|.++.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 33357888999999999998753
No 330
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=59.21 E-value=12 Score=29.29 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=54.2
Q ss_pred CChHHHHHHhhhhC---CC----------hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh---
Q 045917 48 ISLHFTRSLFNNVM---PP----------LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ--- 111 (162)
Q Consensus 48 ~~~~~a~~~~~~m~---~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~--- 111 (162)
|.-..-+++|+.+. |. ...|++|..++.++-.+. -..+=.+|. ++...-+-++-+|.+
T Consensus 461 ~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~-d~~ik~E~i-----~~~nqkse~im~~Gkht~ 534 (650)
T KOG4334|consen 461 GKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWN-DLVIKKEMI-----GNGNQKSEVIMILGKHTE 534 (650)
T ss_pred ccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCc-ceeeeeecc-----CCCCccceeEeeecccee
Confidence 34455667788776 32 335788888777764443 112223333 332222233333333
Q ss_pred ---hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc
Q 045917 112 ---CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 112 ---~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~ 147 (162)
+.+-..+.++-.+-.-.-..|...+|.+||+.|.+.
T Consensus 535 ~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 535 EAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred eeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 234556666665554445689999999999999875
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.80 E-value=95 Score=25.01 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 31 LDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 31 ~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
...|-....+++..++ +.+..-++.+..+|- -+-..|-++...|..+ ..++-..+|.++.+..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d 128 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD 128 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc
Confidence 4456667778888888 888888888888776 6677777888888777 5566777777665543
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.77 E-value=17 Score=26.75 Aligned_cols=139 Identities=13% Similarity=0.029 Sum_probs=84.4
Q ss_pred hhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-------------------------------CCh
Q 045917 17 HHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-------------------------------PPL 64 (162)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-------------------------------~~~ 64 (162)
..|+++|..+..+.-++ .+-+-++..+- ..+...|...+.... -|.
T Consensus 150 ~KA~ELFayLv~hkgk~--v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHKGKE--VTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhcCCc--ccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 45788888886554332 22356666666 777777776655321 245
Q ss_pred hHHHHHHHHHHcC-CCchHHHHHHHHHHHcCCCCC-------------CccHHH----HHHHhhhhccchhhhHHHHHHH
Q 045917 65 FAYNTLIRAYAKT-SCSIESIKLFDEMLKTGLRPD-------------NLTYPF----VVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 65 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~-------------~~t~~~----li~~~~~~~~~~~a~~i~~~~~ 126 (162)
.-|-..+...... ...+++.++....+. +.-|+ ..+|.. .-..|..+|.+.+|.++++...
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5565555544443 233444444433321 22221 122333 3467778899999999998888
Q ss_pred HHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 127 ~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+.. +.+...+-.|+..|+..|+-..|.+=++.
T Consensus 307 tld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 307 TLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred hcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 765 46788888999999999995555544433
No 333
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=58.45 E-value=16 Score=20.38 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=30.9
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccc
Q 045917 75 AKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~ 115 (162)
.-.++.+.+.+++++..+.|..|.......+..+..+.|+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999888888777666677776666653
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.24 E-value=1.2e+02 Score=25.51 Aligned_cols=112 Identities=9% Similarity=-0.019 Sum_probs=65.1
Q ss_pred HHhhchhhhcchhHHHHHhcCC----CchhHHHHHHHhhC--CCC--hHHHHHHhhhhC---CChhHHHHHHHHHHcCCC
Q 045917 11 QLSKTAHHHHQLPALFLKTSLD----HNTYIISRFILTSL--PIS--LHFTRSLFNNVM---PPLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~--~~~--~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~ 79 (162)
.-.|++++|+++|-.+-++.+. .....|-...+.+- .++ -+.-+..|+.|. .+...|......|.+.|+
T Consensus 745 ~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3347888888888777665532 23334555555544 111 112333444443 566677777777777777
Q ss_pred chHHHHHHHHHH--------HcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 80 SIESIKLFDEML--------KTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 80 ~~~a~~~~~~m~--------~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.+.-.+-+-... ...++-|+.-...+.+++.+.|.-++|-+.+
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 765554433221 2235556666677788888888877776554
No 335
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.89 E-value=19 Score=28.80 Aligned_cols=60 Identities=7% Similarity=-0.016 Sum_probs=26.2
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
+.....-++..|. .|..+.|.++.+.+. ....-|..-+.-+.+.|+...+-.+-+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444566666666 777777777777665 33445666677777777777766666665543
No 336
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=55.30 E-value=82 Score=27.37 Aligned_cols=75 Identities=9% Similarity=-0.005 Sum_probs=55.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCC-ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcC
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g 148 (162)
|-....+.+++++|+.|.+.|+-+.. ..|...-..+.+.+.+.+|..++..-.+....|-...-..+.....+.+
T Consensus 88 ~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 88 LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 44667889999999999999986644 4456667777888889999999988888777776666555544444433
No 337
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.60 E-value=61 Score=22.12 Aligned_cols=62 Identities=3% Similarity=-0.024 Sum_probs=36.2
Q ss_pred hHHHHHHhhhhC---CChh----H-----HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc
Q 045917 50 LHFTRSLFNNVM---PPLF----A-----YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114 (162)
Q Consensus 50 ~~~a~~~~~~m~---~~~~----~-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 114 (162)
++.|..+|+.+. +... . =-..+..|.++|.+++|.+++++.-. .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 566777777766 2211 1 22244566777888888888777654 3565555555555554443
No 338
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.21 E-value=81 Score=23.52 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=34.1
Q ss_pred cchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHH
Q 045917 20 HQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYA 75 (162)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~ 75 (162)
.++|+.++..++.|.=+.+.=+.-.++ .-.+.++.++|+..-.|..-|..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHH
Confidence 456666666667776666665555566 66666677777666544444555555544
No 339
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.98 E-value=65 Score=24.42 Aligned_cols=48 Identities=17% Similarity=-0.033 Sum_probs=23.4
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHH
Q 045917 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
+|+..+|-..++++.+. .+.|...+.-.=++|.-.|+...-...++.+
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kI 163 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKI 163 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHh
Confidence 35555555555555432 3344444444445555555555444444444
No 340
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.71 E-value=1.2e+02 Score=24.53 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHHHHHhhCCCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchh
Q 045917 38 ISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGV 117 (162)
Q Consensus 38 ~~~ll~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~ 117 (162)
-++++..|..|-+-...+.+++| ..-+++..++.+-+..-+..+..+|..-| .+...+-.+++.|... .-++
T Consensus 45 k~si~~lyisg~~~~s~~~l~d~-----~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~ 116 (711)
T COG1747 45 KNSIIALYISGIISLSKQLLDDS-----CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQ 116 (711)
T ss_pred hhhhHHHHHHHHHHhhhccccch-----HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-Cchh
Confidence 45555554455444444444444 34456666666666666667777776533 4566667777777666 4445
Q ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 118 GGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 118 a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.-.+++.+.+..+. |+..-..|...|-+ ++...+...|.
T Consensus 117 l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~ 155 (711)
T COG1747 117 LYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFG 155 (711)
T ss_pred hHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHH
Confidence 55566655555442 33333344444443 44444444443
No 341
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=52.77 E-value=47 Score=20.65 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=27.2
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHH
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y 144 (162)
.++|+...++...++|..|...|.+.|- .+...-+.|-..+
T Consensus 65 PtViD~lrRC~T~EEALEVInylek~GE-It~e~A~eLr~~L 105 (128)
T PF09868_consen 65 PTVIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKELRSIL 105 (128)
T ss_pred ChHHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3567777778888888888888888873 4444444444333
No 342
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=52.21 E-value=86 Score=22.51 Aligned_cols=130 Identities=6% Similarity=-0.108 Sum_probs=77.3
Q ss_pred HhhchhhhcchhHHHHHhc--CCCc------hhHHHHHHHhhCCC-ChHHHHHHhhhh----------C---CC-----h
Q 045917 12 LSKTAHHHHQLPALFLKTS--LDHN------TYIISRFILTSLPI-SLHFTRSLFNNV----------M---PP-----L 64 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~--~~~~------~~~~~~ll~~~~~~-~~~~a~~~~~~m----------~---~~-----~ 64 (162)
+.|+.+.|...+....... ..|+ ...||.=...+..+ +++.|...+++. . |+ .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3478888988888886544 2232 22344444454444 666665555432 1 32 3
Q ss_pred hHHHHHHHHHHcCCCchHHH---HHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESI---KLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 140 (162)
.+...++.+|...+..+... .+.+.+.. .. |+ ...+-.-++.+-+.++.+.+.+++..|...-. -....+...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLES-EY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence 45677888888877666544 44455522 22 33 44454567777778888899998888887632 133445555
Q ss_pred HHHH
Q 045917 141 LRMY 144 (162)
Q Consensus 141 l~~y 144 (162)
++.+
T Consensus 162 l~~i 165 (278)
T PF08631_consen 162 LHHI 165 (278)
T ss_pred HHHH
Confidence 5555
No 343
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.55 E-value=1e+02 Score=23.25 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=39.3
Q ss_pred CCChHHHHHHhhhhC--------CChhHH--HHHHHHHHcCCCchHHHHHHHHHHH-----cCCCCCCcc
Q 045917 47 PISLHFTRSLFNNVM--------PPLFAY--NTLIRAYAKTSCSIESIKLFDEMLK-----TGLRPDNLT 101 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~--------~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t 101 (162)
.++.++|.+.++++. |+.+.| +.+.+.+...||++++.+.+++.+. .+++|++++
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 667888888887775 665554 3455566667888888888888766 577776554
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.45 E-value=29 Score=27.64 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHH
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
...++.-|.+.+++++|..++..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Confidence 445666777777777777776666
No 345
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.39 E-value=69 Score=21.19 Aligned_cols=66 Identities=9% Similarity=-0.060 Sum_probs=39.2
Q ss_pred HHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhh
Q 045917 53 TRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118 (162)
Q Consensus 53 a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a 118 (162)
+..+++... ..+..=..++..+...++.-.|.++++++.+.+..++..|.---++.+...|-+...
T Consensus 13 ~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 344444433 333333445555555566667777777777777777777766666666666655433
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.11 E-value=96 Score=22.76 Aligned_cols=53 Identities=11% Similarity=-0.010 Sum_probs=24.4
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh-----hccchhhhHHH
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ-----CLLIGVGGSVH 122 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~-----~~~~~~a~~i~ 122 (162)
-|-.|.|.+++..+.++-..-.+..-.-+...|.++++-|.. .|.+++|+++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344455555555555555554443222222235554444433 35555555544
No 347
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=51.02 E-value=16 Score=25.43 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=59.5
Q ss_pred CchHHHHHHHHHHHcCCC-------CCCccHHHHHHHhhhhcc---------chhhhHHHHHHHHHhcCc-chhHHHHHH
Q 045917 79 CSIESIKLFDEMLKTGLR-------PDNLTYPFVVKASDQCLL---------IGVGGSVHSLIFKVGLHS-DKYIGNTLL 141 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~-------p~~~t~~~li~~~~~~~~---------~~~a~~i~~~~~~~~~~~-~~~~~~~ll 141 (162)
..+.|..++.+|--..++ -...-|-.+.++|.+.|- .+..+.+.+-....|++. =+.+|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 356777887777554332 244557788888888653 345556777778888742 257899999
Q ss_pred HHHHhcCChhHHHHhhcccCC
Q 045917 142 RMYAACKEIDFAKALFDEMPE 162 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~m~~ 162 (162)
+-=...-+.++..+++..+++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k~ 236 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVKK 236 (236)
T ss_pred ccccCCCCHHHHHHHHHHhhC
Confidence 888888889999999887763
No 348
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.44 E-value=95 Score=22.48 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=79.4
Q ss_pred chhhhcchhHHHHHhcC----CCchhHHHHHHHhhC-CCChHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSL----DHNTYIISRFILTSL-PISLHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
....|.+.++.....+. ..++.....++.... .|..+.-..+++... ++...-..++.+.+...+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 35567777777765422 445566666666666 777776666666666 67888899999999999999989999
Q ss_pred HHHHHcC-CCCCCccHHHHHHHhhhhccc--hhhhHHH----HHHHHHhcCcchhHHHHHHHH----HHhcCChhHHHHh
Q 045917 88 DEMLKTG-LRPDNLTYPFVVKASDQCLLI--GVGGSVH----SLIFKVGLHSDKYIGNTLLRM----YAACKEIDFAKAL 156 (162)
Q Consensus 88 ~~m~~~~-~~p~~~t~~~li~~~~~~~~~--~~a~~i~----~~~~~~~~~~~~~~~~~ll~~----y~~~g~~~~a~~~ 156 (162)
+.....+ +++.. ...++.++...+.. +.+.+.+ +.+.+. +.++......++.. ++.....++..++
T Consensus 225 ~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 225 DLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 9888765 54444 34455555422222 3443332 333322 22222234444443 4445566666666
Q ss_pred hc
Q 045917 157 FD 158 (162)
Q Consensus 157 ~~ 158 (162)
|+
T Consensus 302 ~~ 303 (324)
T PF11838_consen 302 FE 303 (324)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 349
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=50.24 E-value=1.2e+02 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
..+.+.+...+..|+++.|+++.+.-++.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34677788888888888888888765543
No 350
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=49.47 E-value=66 Score=20.37 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=41.2
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC--CChhH-HHHHHHHHHcCCCchHHHHHHHHH
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM--PPLFA-YNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
.+..++-.++. .|..++|.++++.+. ++... -..++..|.+..+.++..++-++.
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44566666777 999999999999998 54444 445899999998888777765543
No 351
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.12 E-value=40 Score=23.80 Aligned_cols=55 Identities=5% Similarity=-0.258 Sum_probs=41.7
Q ss_pred HHHHHhhhhccchhhhHHHHHHHH----Hhc-CcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 104 FVVKASDQCLLIGVGGSVHSLIFK----VGL-HSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 104 ~li~~~~~~~~~~~a~~i~~~~~~----~~~-~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.+.+.|.+.|++++|.++++.+.. .|. .+...+...+..++.+.|+.++...+-=
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 355678889999999999988743 232 4556677889999999999998877643
No 352
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.03 E-value=16 Score=29.07 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=14.1
Q ss_pred hcCChhHHHHhhcccC
Q 045917 146 ACKEIDFAKALFDEMP 161 (162)
Q Consensus 146 ~~g~~~~a~~~~~~m~ 161 (162)
+...+|+-+++|+||.
T Consensus 315 R~~~vEenl~iw~EM~ 330 (712)
T KOG1147|consen 315 RSNSVEENLRIWEEMK 330 (712)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 7788999999999985
No 353
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.95 E-value=53 Score=19.14 Aligned_cols=68 Identities=7% Similarity=0.012 Sum_probs=35.8
Q ss_pred HcCCCchHHHHHHHHHHHc----CCCCC--CccHH--HHHHHhhhhccchhhhHHHHHHHHH-hcCcchhHHHHHHH
Q 045917 75 AKTSCSIESIKLFDEMLKT----GLRPD--NLTYP--FVVKASDQCLLIGVGGSVHSLIFKV-GLHSDKYIGNTLLR 142 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~----~~~p~--~~t~~--~li~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~ll~ 142 (162)
.+.|++..|.+-+.+..+. +..+. ...+. .+.......|+.++|...+++..+- .-.-|.......+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4568888887666665432 22221 11122 2334455667888888877776653 33444444443333
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=48.78 E-value=60 Score=26.46 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=45.3
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHH-HHHhhhhC--CChhHHHHHHHHHHcC---
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFT-RSLFNNVM--PPLFAYNTLIRAYAKT--- 77 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a-~~~~~~m~--~~~~~~~~li~~~~~~--- 77 (162)
.+..+|--+|.++.|.+.+.. ..+...+.+.+.+.+..|. .+-.+.. ..++..-. |...-+..||..|.+.
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 456677778888888776554 3455677888888888887 3333222 22222222 3346788899999985
Q ss_pred CCchHHHHHHHHHHH
Q 045917 78 SCSIESIKLFDEMLK 92 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~ 92 (162)
.++.+|++.|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 577778877766544
No 355
>PRK02287 hypothetical protein; Provisional
Probab=48.64 E-value=80 Score=21.14 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=41.2
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC--CC-hhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM--PP-LFAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
.+..++..++. .|..+.|..+++... ++ ...-..++..|.+..+.++..++-++..
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34566777777 899999999988887 43 3344568888988888888877766644
No 356
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=48.56 E-value=44 Score=25.99 Aligned_cols=121 Identities=8% Similarity=-0.108 Sum_probs=83.4
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC----------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-----CCCcc
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM----------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-----PDNLT 101 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~t 101 (162)
|..|=+.|. .|+++.|....+.-- .-...+..+=+++.-.|+++.|.+-|+.-....++ ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 444555666 788988877655321 33556777888888899999999999875433222 23445
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHH----HH-hcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 102 YPFVVKASDQCLLIGVGGSVHSLIF----KV-GLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 102 ~~~li~~~~~~~~~~~a~~i~~~~~----~~-~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.-+|-++|.-..++++|..+|..=. +. ........|.+|=.+|...|.-++|+.+.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5667778877888889988875421 11 123346788999999999999999887643
No 357
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.51 E-value=33 Score=23.65 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCC--------------CCCCccHHHHHHHhhhhccchhhhHHHH
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKTGL--------------RPDNLTYPFVVKASDQCLLIGVGGSVHS 123 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~--------------~p~~~t~~~li~~~~~~~~~~~a~~i~~ 123 (162)
++|..|.+.-++.+..++++.|-+..+ .+--...|...+.+.++|+++.|.-+.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 467788888899999999988866432 2445667888899999999999988765
No 358
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=48.04 E-value=45 Score=21.56 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=27.5
Q ss_pred hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHH
Q 045917 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~ 143 (162)
-+.|-.++.+.+.+++.++|+..+...|+..++-
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3557788888999999999998888888877754
No 359
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.44 E-value=74 Score=20.38 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHHHHHHcC-CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccc
Q 045917 69 TLIRAYAKT-SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115 (162)
Q Consensus 69 ~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~ 115 (162)
.++..+... ++.-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444433 34556666666666666555555555555555555544
No 360
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=47.00 E-value=75 Score=20.35 Aligned_cols=123 Identities=13% Similarity=0.026 Sum_probs=66.1
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---CCh-hHHHHHHH-HHHcCCCchHHHHHHHHHHHcCCCC----CCccHHH
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---PPL-FAYNTLIR-AYAKTSCSIESIKLFDEMLKTGLRP----DNLTYPF 104 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ 104 (162)
...+..+-..+. .+....+...+.... ++. ......-. .+...|+.+.+...+.+... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 333444444444 666667777766655 222 22222233 56777888888888777743 222 1222222
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 105 li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
....+...++.+.+...+....+.........+..+-..|...++++.|...+..
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 2233345566666666666665542211355666666677777766666665543
No 361
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.59 E-value=29 Score=20.87 Aligned_cols=23 Identities=0% Similarity=-0.002 Sum_probs=16.7
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
..++..|. .|+.++|..-++++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45566666 888888888888877
No 362
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=46.53 E-value=53 Score=18.42 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=6.6
Q ss_pred HHHHHHHHcCCCCCC
Q 045917 85 KLFDEMLKTGLRPDN 99 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~ 99 (162)
++++.+.+.|..++.
T Consensus 40 ~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 40 EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHHTTTCTT-
T ss_pred HHHHHHHHhcccccc
Confidence 344444445555544
No 363
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.44 E-value=1.3e+02 Score=24.46 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=47.8
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC--CCChHHHHHHhhhhC-------CChhHHHHHHHHHHcC
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL--PISLHFTRSLFNNVM-------PPLFAYNTLIRAYAKT 77 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~a~~~~~~m~-------~~~~~~~~li~~~~~~ 77 (162)
+..+.+-|..+.|.+.-+.+.+....-||...-.+|+.|+ ..++.--.+++++.+ .....|+.-+.-+.-+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3344555677778877777777777778889999999999 777777777777664 2334555544443333
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.38 E-value=1.2e+02 Score=22.36 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHH--cCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH-
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLK--TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA- 145 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~- 145 (162)
.-|.+++..+++.+++...-+--+ ..++|...-.. |--|.+.+......++-..=.+..-.-+..-|.++...|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 345555556666555544333211 12333322222 2223455555544444333222111112222444433333
Q ss_pred ----hcCChhHHHHhh
Q 045917 146 ----ACKEIDFAKALF 157 (162)
Q Consensus 146 ----~~g~~~~a~~~~ 157 (162)
=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 356666665543
No 365
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.10 E-value=1.8e+02 Score=24.46 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=54.1
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC-------CChhHHHHHHHHHHcCCCchHHHHHHHH----HHHcCCCCCCccHHHHH
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM-------PPLFAYNTLIRAYAKTSCSIESIKLFDE----MLKTGLRPDNLTYPFVV 106 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~t~~~li 106 (162)
.+|+.+|. +|++..+..+++... .-...||..|+...++|.++ ..++... +.+.-+.-|+.||..|+
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~-l~~~~~~~~~~lq~a~ln~d~~t~all~ 110 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE-LTDVLSNAKELLQQARLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 48999999 999999999999875 23567899999999998765 2333332 23345778899998888
Q ss_pred HHhhhh
Q 045917 107 KASDQC 112 (162)
Q Consensus 107 ~~~~~~ 112 (162)
.+....
T Consensus 111 ~~sln~ 116 (1117)
T COG5108 111 QASLNP 116 (1117)
T ss_pred HhhcCh
Confidence 776553
No 366
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.10 E-value=98 Score=21.14 Aligned_cols=128 Identities=7% Similarity=-0.111 Sum_probs=75.9
Q ss_pred HHHHHHHHh--hchhhhcchhHHHHHhcCCCchhHHHHHHH-hhC-CCChHHHHHHhhhhC---CChhHHHHH---H--H
Q 045917 5 QIETLIQLS--KTAHHHHQLPALFLKTSLDHNTYIISRFIL-TSL-PISLHFTRSLFNNVM---PPLFAYNTL---I--R 72 (162)
Q Consensus 5 ~~~~~l~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~-~~~~~~a~~~~~~m~---~~~~~~~~l---i--~ 72 (162)
+|...|.-. +...+|...|..+.+.|..-=+..-..-.. ... .|+-..|..-|+++. |.+....-+ = -
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 344444433 467788889999988886543333222222 333 899999999999987 222222111 1 1
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc
Q 045917 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS 132 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~ 132 (162)
.+..+|-+++...-..-+-..+-+.-...=.+|--+-.+.|++.+|.+.|..+......|
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 234467777666555444333322222233445556668999999999999887643333
No 367
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=44.95 E-value=34 Score=18.66 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.0
Q ss_pred cCCCchHHHHHHHHHHHcC-CCCC
Q 045917 76 KTSCSIESIKLFDEMLKTG-LRPD 98 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~-~~p~ 98 (162)
...|++.|+..|.+++..| ++|+
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChh
Confidence 4689999999999998765 4444
No 368
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=44.75 E-value=33 Score=26.91 Aligned_cols=76 Identities=7% Similarity=-0.028 Sum_probs=49.3
Q ss_pred HHHHHHHhhC---CCChHHHHHHhhhhC-------------------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 37 IISRFILTSL---PISLHFTRSLFNNVM-------------------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 37 ~~~~ll~~~~---~~~~~~a~~~~~~m~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
.|-.+..+.. .+.+++|...+..-. +|..-=++...++...|++.++..++++|...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3444544443 666777666554211 344444667788888999999999998887653
Q ss_pred ----CCCCCccHHHHHHHhhhh
Q 045917 95 ----LRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 95 ----~~p~~~t~~~li~~~~~~ 112 (162)
...|..+|+.++-.+.++
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHH
Confidence 347888888866555553
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.68 E-value=60 Score=25.89 Aligned_cols=110 Identities=13% Similarity=0.004 Sum_probs=69.8
Q ss_pred hchhhh-cchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 14 KTAHHH-HQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 14 ~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
|++..| +++++.++.....|+.....+.| +. .|.++.+...+.... ....+-..+++...+.|+++.|...-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 444433 56777776666666644333322 34 788888888888776 56777888999999999999999988
Q ss_pred HHHHHcCCC-CCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 88 DEMLKTGLR-PDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 88 ~~m~~~~~~-p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
.-|....++ |...+. ..-+.-..|-++++...+..+..
T Consensus 381 ~~~l~~eie~~ei~~i--aa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 381 EMMLSNEIEDEEVLTV--AAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHhccccCChhheee--ecccHHHHhHHHHHHHHHHHHhc
Confidence 888776664 332222 11222334555666655555543
No 370
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.48 E-value=79 Score=19.90 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=44.9
Q ss_pred hHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHH
Q 045917 50 LHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHS 123 (162)
Q Consensus 50 ~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~ 123 (162)
++.+.+.|...+ .|-.-|--+---|+.. .++..++|..|.+.||-..... |......+...|++.+|.+|+.
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADN--CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445666666555 3333332222223322 2557789999999988655444 4566667777889999998875
No 371
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.18 E-value=1.1e+02 Score=21.39 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=48.8
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhCCChhHH---HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVMPPLFAY---NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
.-++..+. .|+.+.|.++++...|+..+. +.++.. ..++.+.+|+..-+...+.. ....+..+++.+....
T Consensus 112 ~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 112 DKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 45888888 999999999999988433333 333444 66689999988877664421 1446777777776443
No 372
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=43.85 E-value=44 Score=24.89 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
---.++..|.+.|.+++|+++....++
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 344566677777777777766666543
No 373
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=43.53 E-value=69 Score=19.24 Aligned_cols=58 Identities=14% Similarity=0.027 Sum_probs=43.6
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccch---hhhHHHHHHHHHhc
Q 045917 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG---VGGSVHSLIFKVGL 130 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~---~a~~i~~~~~~~~~ 130 (162)
.+....+++...+.....++..+-|+-.|=+.+++.+.+....+ +|..+-..+...|+
T Consensus 5 lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGy 65 (99)
T cd04445 5 LYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGY 65 (99)
T ss_pred HHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCC
Confidence 34455677777777788888888899999999999988876554 66666677777775
No 374
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.19 E-value=2e+02 Score=25.03 Aligned_cols=91 Identities=16% Similarity=0.039 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHcCC--CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc----chhhhHHHH----HHHHHhcCcc
Q 045917 64 LFAYNTLIRAYAKTS--CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL----IGVGGSVHS----LIFKVGLHSD 133 (162)
Q Consensus 64 ~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~----~~~a~~i~~----~~~~~~~~~~ 133 (162)
..-...+|.+|++.+ ++++|+.+..++++. +...-...++..+-.-+ ++.|...++ .|.....+.|
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkD 887 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKD 887 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccC
Confidence 334677888999988 999999999999866 33333333333332211 222222211 1222234568
Q ss_pred hhHHHHHHHHHH-------------hcCChhHHHHhhc
Q 045917 134 KYIGNTLLRMYA-------------ACKEIDFAKALFD 158 (162)
Q Consensus 134 ~~~~~~ll~~y~-------------~~g~~~~a~~~~~ 158 (162)
+.-|-..|+-+- ..+++++|.+-+.
T Consensus 888 PKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~ 925 (928)
T PF04762_consen 888 PKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLS 925 (928)
T ss_pred hHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHH
Confidence 888888877665 4566667665443
No 375
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.83 E-value=1.3e+02 Score=21.87 Aligned_cols=101 Identities=10% Similarity=-0.004 Sum_probs=50.7
Q ss_pred CChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 48 ISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 48 ~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
.++......++.+. ....-..-|..+...|++..|++++.+..+.- . ...-|+++=.--. .+++.......+..
T Consensus 112 ~~l~~ll~~L~~i~-~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~~---~L~e~~~~i~~~ld 185 (291)
T PF10475_consen 112 QNLKKLLEKLEQIK-TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLSS---QLQETLELIEEQLD 185 (291)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHhH---HHHHHHHHHHHHHH
Confidence 33333333333332 33344455667778899999999988876531 0 1111211111111 12222222222111
Q ss_pred -----HhcCcchhHHHHHHHHHHhcCChhHHH
Q 045917 128 -----VGLHSDKYIGNTLLRMYAACKEIDFAK 154 (162)
Q Consensus 128 -----~~~~~~~~~~~~ll~~y~~~g~~~~a~ 154 (162)
--..-|+..|..++.+|.-.|+...+.
T Consensus 186 ~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 186 SDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 111346788888999988888766554
No 376
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=42.74 E-value=1.3e+02 Score=21.69 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=85.7
Q ss_pred hchhhhcchhHHHHHhcCCCchhHH---HHHHHhhC-CCChHHHHHHhhhhC---C--ChhHHHHHHHHHHc-------C
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYII---SRFILTSL-PISLHFTRSLFNNVM---P--PLFAYNTLIRAYAK-------T 77 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~-~~~~~~a~~~~~~m~---~--~~~~~~~li~~~~~-------~ 77 (162)
|++++|.+-|+.+.+. .+-++.+- -.++-++. .++.+.|....++.. | .-..|-..|.++.. .
T Consensus 48 gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 48 GNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred CCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccc
Confidence 5777888888887633 33333332 23333344 899999999998875 2 23445555555554 3
Q ss_pred CCchHHHHHHHHHHHc-------CCCCCCccHHH------------HHHHhhhhccchhhhHHHHHHHHHhcCcchhH--
Q 045917 78 SCSIESIKLFDEMLKT-------GLRPDNLTYPF------------VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI-- 136 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~-------~~~p~~~t~~~------------li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~-- 136 (162)
.|...+..-|..+++. .-.||...-.. +-+.|.+.|.+..|..-++.|.+. .+-+..+
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~e 205 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVRE 205 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHH
Confidence 5666666666666442 22333322211 234566677777777777888776 4333444
Q ss_pred -HHHHHHHHHhcCChhHHHHh
Q 045917 137 -GNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 137 -~~~ll~~y~~~g~~~~a~~~ 156 (162)
.-.+..+|-+.|..++|.+.
T Consensus 206 aL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 206 ALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHHHhCChHHHHHH
Confidence 34567889999999888764
No 377
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=42.41 E-value=14 Score=28.51 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=34.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCC---CCCCccHHHHHHHhhhhccchhhhHHHHH
Q 045917 74 YAKTSCSIESIKLFDEMLKTGL---RPDNLTYPFVVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~---~p~~~t~~~li~~~~~~~~~~~a~~i~~~ 124 (162)
+++.|+......+|+...+.|- ..-+..|+.|=++|.-.+++++|.++|..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 5667888888888888777653 23344566666777777788888877643
No 378
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=42.29 E-value=53 Score=18.28 Aligned_cols=22 Identities=14% Similarity=-0.009 Sum_probs=10.0
Q ss_pred CccHHHHHHHhhhhccchhhhH
Q 045917 99 NLTYPFVVKASDQCLLIGVGGS 120 (162)
Q Consensus 99 ~~t~~~li~~~~~~~~~~~a~~ 120 (162)
..|...|+.++.+.|..+-+..
T Consensus 57 ~at~~~L~~aL~~~~~~d~~~~ 78 (83)
T PF00531_consen 57 NATVDQLIQALRDIGRNDLAEK 78 (83)
T ss_dssp TSSHHHHHHHHHHTTHHHHHHH
T ss_pred CCcHHHHHHHHHHCCcHHHHHH
Confidence 3344445555444444444433
No 379
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.28 E-value=83 Score=22.18 Aligned_cols=54 Identities=7% Similarity=-0.018 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHc----C-CCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKT----G-LRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.+-.-|.+.|++++|.++|+.+... | ..+...+...+.+++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566788899999999999998422 2 2334444455556666666666555443
No 380
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.18 E-value=64 Score=20.66 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=21.4
Q ss_pred HHHHHhcCCCchhHHHHHHHhhC-C-CChHHHHHHhhhhC
Q 045917 24 ALFLKTSLDHNTYIISRFILTSL-P-ISLHFTRSLFNNVM 61 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ll~~~~-~-~~~~~a~~~~~~m~ 61 (162)
+.+++.|+.+++. -..++..+. . +..-.|..+++.+.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~ 44 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLI 44 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3456667665542 334444444 3 45667778877775
No 381
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.97 E-value=1.8e+02 Score=23.25 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC------------------CChhHHHHHHHHHHcCCCchHHHH
Q 045917 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------------------PPLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~------------------~~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
..+.+.|+..+......+... +.|++..|..+++... ++....-.++.+... ++.+.++.
T Consensus 189 ~il~~egi~~~~~al~~ia~~-s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~ 266 (509)
T PRK14958 189 HLLKEENVEFENAALDLLARA-ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLG 266 (509)
T ss_pred HHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 345567777776555544433 2677888888776431 333344445555544 88999999
Q ss_pred HHHHHHHcCCCCC
Q 045917 86 LFDEMLKTGLRPD 98 (162)
Q Consensus 86 ~~~~m~~~~~~p~ 98 (162)
++++|.+.|..|.
T Consensus 267 ~~~~l~~~g~~~~ 279 (509)
T PRK14958 267 CVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHcCCCHH
Confidence 9999999998874
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.47 E-value=1.3e+02 Score=22.83 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=9.5
Q ss_pred HHHHHHhcCChhHHHHhhc
Q 045917 140 LLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~ 158 (162)
.+..-+..|+.+-+..+++
T Consensus 171 pL~~A~~~g~~eiv~~Ll~ 189 (413)
T PHA02875 171 PLIIAMAKGDIAICKMLLD 189 (413)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3444445566655554443
No 383
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=41.46 E-value=1.2e+02 Score=21.18 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~ 147 (162)
++...+...|+..+..+++.|++-|++.
T Consensus 145 EL~~Al~~~Gy~Lspq~~~~lv~kyd~~ 172 (221)
T KOG0037|consen 145 ELRQALTQLGYRLSPQFYNLLVRKYDRF 172 (221)
T ss_pred HHHHHHHHcCcCCCHHHHHHHHHHhccc
Confidence 3444555566666666666666666644
No 384
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=41.16 E-value=1.3e+02 Score=21.27 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=46.6
Q ss_pred HHHHHHHhhCCCChHHHHHHhhhhC---CChh-HH---HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh
Q 045917 37 IISRFILTSLPISLHFTRSLFNNVM---PPLF-AY---NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 37 ~~~~ll~~~~~~~~~~a~~~~~~m~---~~~~-~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
.|..-...+..|++++|...|+.+. |+.. .- =.+..++.+.+++++|...+++..+.--.-....+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 4444444433899999999999987 5432 22 134567788999999999999986653322233344444443
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.87 E-value=34 Score=14.59 Aligned_cols=27 Identities=4% Similarity=-0.231 Sum_probs=14.1
Q ss_pred cchhhhHHHHHHHHHhcCcchhHHHHHH
Q 045917 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 114 ~~~~a~~i~~~~~~~~~~~~~~~~~~ll 141 (162)
+.+.+..+++.+.+.. +-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 4556666666665542 23455554444
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.79 E-value=1.5e+02 Score=23.74 Aligned_cols=80 Identities=13% Similarity=-0.017 Sum_probs=48.3
Q ss_pred cCCCchHHH-HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHH
Q 045917 76 KTSCSIESI-KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154 (162)
Q Consensus 76 ~~~~~~~a~-~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~ 154 (162)
..|++..|- +++.-+++....|+.....+.|. ...|+++.+.+......+. +.....+..++++..-+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 345555544 55555666666666555444443 3567777776666555442 2345566777788888888888777
Q ss_pred Hhhc
Q 045917 155 ALFD 158 (162)
Q Consensus 155 ~~~~ 158 (162)
..-.
T Consensus 378 s~a~ 381 (831)
T PRK15180 378 STAE 381 (831)
T ss_pred HHHH
Confidence 6544
No 387
>PLN03025 replication factor C subunit; Provisional
Probab=40.65 E-value=1.5e+02 Score=21.82 Aligned_cols=75 Identities=8% Similarity=0.107 Sum_probs=46.7
Q ss_pred HHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC-----------------CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 24 ALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM-----------------PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~-----------------~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
....+.|+..+......++..+ .|++..+...++... +....-..++.... .+++++|+..
T Consensus 169 ~i~~~egi~i~~~~l~~i~~~~-~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~~~~~~a~~~ 246 (319)
T PLN03025 169 KVVEAEKVPYVPEGLEAIIFTA-DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-KGKFDDACDG 246 (319)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3345667777776666665432 577777776665321 22223334444443 5788999999
Q ss_pred HHHHHHcCCCCCCc
Q 045917 87 FDEMLKTGLRPDNL 100 (162)
Q Consensus 87 ~~~m~~~~~~p~~~ 100 (162)
+.+|...|..|...
T Consensus 247 l~~ll~~g~~~~~I 260 (319)
T PLN03025 247 LKQLYDLGYSPTDI 260 (319)
T ss_pred HHHHHHcCCCHHHH
Confidence 99998888887643
No 388
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=40.42 E-value=97 Score=19.74 Aligned_cols=30 Identities=10% Similarity=-0.132 Sum_probs=18.0
Q ss_pred cHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 101 t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
.+.+++-.+...|+++.|..+.+...+.|.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 344555555666666666666666666553
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.36 E-value=1.2e+02 Score=20.78 Aligned_cols=61 Identities=5% Similarity=-0.025 Sum_probs=38.1
Q ss_pred hhhhcchhHHHHHhcCCCc--h-----hHHHHHHHhhC-CCChHHHHHHhhhhC--CChhHHHHHHHHHHc
Q 045917 16 AHHHHQLPALFLKTSLDHN--T-----YIISRFILTSL-PISLHFTRSLFNNVM--PPLFAYNTLIRAYAK 76 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~--~-----~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~ 76 (162)
++.|..+|+.+.+.--.|. . ..--..+..|. .|.+++|.++++..- |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 4567778888866544331 1 11233444666 999999999999987 665554444444443
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.00 E-value=1.7e+02 Score=23.66 Aligned_cols=93 Identities=10% Similarity=-0.006 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
+...|..-+.-+...++-. ....++....--..+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3444665555555443222 44445544332233445566778888888888888888777655533 2356777788
Q ss_pred HHHhcCChhHHHHhhcc
Q 045917 143 MYAACKEIDFAKALFDE 159 (162)
Q Consensus 143 ~y~~~g~~~~a~~~~~~ 159 (162)
-+.++|+.+.+.++-+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHH--------------
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 88888888777766554
No 391
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.54 E-value=2e+02 Score=23.11 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=41.5
Q ss_pred CchhHHHHHHHhhCCCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 045917 33 HNTYIISRFILTSLPISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP 97 (162)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 97 (162)
+.+..++.|++.+..=+.+.-..+++++. .....|..++.+....|-.....-+.+.++...+.+
T Consensus 308 ~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~ 373 (574)
T smart00638 308 PAAAKFLRLVRLLRTLSEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP 373 (574)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH
Confidence 45667777777766333444445555443 115678888899888888776666666666655543
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.04 E-value=60 Score=16.92 Aligned_cols=20 Identities=15% Similarity=0.090 Sum_probs=10.1
Q ss_pred HHHcCCCchHHHHHHHHHHH
Q 045917 73 AYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~ 92 (162)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34455555555555555544
No 393
>PRK07914 hypothetical protein; Reviewed
Probab=38.99 E-value=1.6e+02 Score=21.69 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=47.0
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC--CCChHH-HHHHhhh----hC--------CChhHHHH--HHHHHHcCCCchHHH
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL--PISLHF-TRSLFNN----VM--------PPLFAYNT--LIRAYAKTSCSIESI 84 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~-a~~~~~~----m~--------~~~~~~~~--li~~~~~~~~~~~a~ 84 (162)
+-+.+++.|+..++.....|+..+. .+.+.. ..++.-. +. .+...+|. ++.+ .-.|+..+|.
T Consensus 137 i~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dA-i~~g~~~~A~ 215 (320)
T PRK07914 137 VRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADK-AVAGDVAGAA 215 (320)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHH-HHCCCHHHHH
Confidence 3455567888888888888887765 333222 2222210 00 22222333 2332 3468999999
Q ss_pred HHHHHHHHcCCCCCCc
Q 045917 85 KLFDEMLKTGLRPDNL 100 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~ 100 (162)
.+++++...|..|-..
T Consensus 216 ~~l~~L~~~ge~p~~i 231 (320)
T PRK07914 216 EALRWAMMRGEPHVVL 231 (320)
T ss_pred HHHHHHHHCCCchHHH
Confidence 9999999999887543
No 394
>COG5210 GTPase-activating protein [General function prediction only]
Probab=37.16 E-value=63 Score=25.51 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++..+.+.|+.....++.-++..+.+...++.|.+++|.
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~ 402 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDC 402 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4667777778888888888888888888888888888774
No 395
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.03 E-value=2.2e+02 Score=22.74 Aligned_cols=74 Identities=7% Similarity=0.054 Sum_probs=49.1
Q ss_pred HHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC------------------CChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 26 FLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------------------PPLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~------------------~~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
+.+.|+..+......+. -.+.|++..|..+++... .+...+..++.+....+....|+..+
T Consensus 193 ~~~Egi~~e~eAL~~Ia-~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l 271 (484)
T PRK14956 193 CKIENVQYDQEGLFWIA-KKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEIL 271 (484)
T ss_pred HHHcCCCCCHHHHHHHH-HHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34567776665554333 223788888988887642 33444555666665555567899999
Q ss_pred HHHHHcCCCCCCc
Q 045917 88 DEMLKTGLRPDNL 100 (162)
Q Consensus 88 ~~m~~~~~~p~~~ 100 (162)
.+|.+.|..|...
T Consensus 272 ~~l~~~G~d~~~~ 284 (484)
T PRK14956 272 ESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHcCCCHHHH
Confidence 9999999887544
No 396
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=36.78 E-value=64 Score=25.22 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++|..+.+..+.||.+.+.-+...|++.=-+|-|-++||
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwD 498 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWD 498 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhh
Confidence 456667777788888888888888888888888888776
No 397
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.52 E-value=92 Score=18.33 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=29.8
Q ss_pred hcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCch
Q 045917 19 HHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 19 a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~ 81 (162)
+.++++.....|+ .+......+-..-. .|+.+.|..+++..+.....|+..+.++-..|.-+
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIVQKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhccCCcHHHHHHHHHHHcCchh
Confidence 3445555555552 22223333333333 45566666666665522335555555555554433
No 398
>COG5210 GTPase-activating protein [General function prediction only]
Probab=36.49 E-value=1.1e+02 Score=24.21 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHH
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 137 (162)
+++..|++.|+.+...++..++..+.+...++.+..+++.+.-.|+..-..++
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~ 415 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLA 415 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 77888899999999999999999999999999999999888777654333333
No 399
>COG0819 TenA Putative transcription activator [Transcription]
Probab=36.33 E-value=1.5e+02 Score=20.72 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHH-----------HHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLF-----------DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~-----------~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
|....|+..|...+..|++.+....+ ....+....+...-|...|+.|....-.+.++.+.+.+-+.+-
T Consensus 107 ~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~ 186 (218)
T COG0819 107 PANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAE 186 (218)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 77888999999999999887766443 2233334334566789999998764333344444444444333
Q ss_pred CcchhHHHHHHHHHHhcCChhH
Q 045917 131 HSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 131 ~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
..+..-...|...|...-++|.
T Consensus 187 ~~~~~~~~~l~~iF~~ss~~E~ 208 (218)
T COG0819 187 NSSEEELEKLKQIFLTASRFEL 208 (218)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666555543
No 400
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=36.12 E-value=85 Score=17.83 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=11.2
Q ss_pred CCchHHHHHHHHHHHcCCCC
Q 045917 78 SCSIESIKLFDEMLKTGLRP 97 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p 97 (162)
+++.++...+.++...|+.+
T Consensus 18 ~~~~~~~~~~~~l~~~G~s~ 37 (89)
T PF08542_consen 18 GDFKEARKKLYELLVEGYSA 37 (89)
T ss_dssp TCHHHHHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 46666666666666555544
No 401
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.08 E-value=74 Score=17.15 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=6.8
Q ss_pred CCCchHHHHHHHHHH
Q 045917 77 TSCSIESIKLFDEML 91 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~ 91 (162)
.|++=+|-+++.+..
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 444445555555443
No 402
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=35.26 E-value=1.4e+02 Score=20.06 Aligned_cols=57 Identities=4% Similarity=-0.112 Sum_probs=29.8
Q ss_pred HhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh
Q 045917 56 LFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 56 ~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
.|++++ .+...|+.++.......+.++....++++.+.=-+++..+...++..+.+.
T Consensus 88 flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V 147 (190)
T cd04400 88 YLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKI 147 (190)
T ss_pred HHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 455555 356667777665544434444444555555442234555555555555543
No 403
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.16 E-value=2.6e+02 Score=23.10 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=47.8
Q ss_pred HHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC------------------CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------------------PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~------------------~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
.+.+.|+..+......|.. .+.|++..+..+++... .+....-.++.+... |+...++.+
T Consensus 195 i~~~egi~ie~~AL~~La~-~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~ 272 (618)
T PRK14951 195 VLAAENVPAEPQALRLLAR-AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVET 272 (618)
T ss_pred HHHHcCCCCCHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 3356788777666665554 22788888888776431 233334445555544 889999999
Q ss_pred HHHHHHcCCCCC
Q 045917 87 FDEMLKTGLRPD 98 (162)
Q Consensus 87 ~~~m~~~~~~p~ 98 (162)
++++...|..|.
T Consensus 273 l~~l~~~G~~~~ 284 (618)
T PRK14951 273 ADELRLNGLSAA 284 (618)
T ss_pred HHHHHHcCCCHH
Confidence 999998887764
No 404
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=34.67 E-value=2.8e+02 Score=23.63 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhC--C------------ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVM--P------------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
.|.|..|..|-..-. .-.++-|+..|-... + +-..-.+=|.+| -|++++|.++|-+|.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 577777776655555 667777777766554 1 111122223333 478899999988886543
No 405
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=34.64 E-value=1.4e+02 Score=22.51 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=29.7
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
.++.|.++.+++++.|+.+|-.||--.++-... .+.-|....+.+...|
T Consensus 281 p~erAekf~k~irkLG~~~dG~sylD~FR~LIt--qIGNA~gyVRmirsgg 329 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYLDQFRQLIT--QIGNAMGYVRMIRSGG 329 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH--HHhHHHHHHHHHHHHh
Confidence 457778888888888888887777444433321 3444555555555444
No 406
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.91 E-value=2.9e+02 Score=23.29 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=47.5
Q ss_pred HHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC------------------CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 25 LFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------------------PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~------------------~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
.+.+.|+..+......|.+.. .|++..+..+++... .+....-.++.++.+ ++...++.+
T Consensus 190 Il~kEgi~id~eAL~~Ia~~A-~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~ 267 (709)
T PRK08691 190 VLDSEKIAYEPPALQLLGRAA-AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAK 267 (709)
T ss_pred HHHHcCCCcCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 335667777766655555432 677778877775431 233345555565555 889999999
Q ss_pred HHHHHHcCCCCC
Q 045917 87 FDEMLKTGLRPD 98 (162)
Q Consensus 87 ~~~m~~~~~~p~ 98 (162)
++++...|+.+.
T Consensus 268 l~~L~~~G~d~~ 279 (709)
T PRK08691 268 AQEMAACAVGFD 279 (709)
T ss_pred HHHHHHhCCCHH
Confidence 999998887654
No 407
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.91 E-value=1.1e+02 Score=18.34 Aligned_cols=23 Identities=9% Similarity=-0.171 Sum_probs=17.0
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
..++..|. .++.++|.+-+.++.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhC
Confidence 44566666 788888888888877
No 408
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=33.87 E-value=86 Score=20.87 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=34.8
Q ss_pred HHHHHHHH-HhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 120 SVHSLIFK-VGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 120 ~i~~~~~~-~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+++..+.+ .|+.|......-++..+++.-.++.+.++||.+
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~ 193 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVL 193 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 46677775 888888889999999999988999999999864
No 409
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=33.68 E-value=1.2e+02 Score=21.15 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=30.9
Q ss_pred hcchhHHHH-HhcCCCchhHHHHHHHhhC-CC-ChHHHHHHhhh-hCCC---hhHHHHHHHHHHc
Q 045917 19 HHQLPALFL-KTSLDHNTYIISRFILTSL-PI-SLHFTRSLFNN-VMPP---LFAYNTLIRAYAK 76 (162)
Q Consensus 19 a~~~~~~~~-~~~~~~~~~~~~~ll~~~~-~~-~~~~a~~~~~~-m~~~---~~~~~~li~~~~~ 76 (162)
|-.++-... +..+.+|.+|...+-+... .+ +.++..++|++ .+.+ ..-|.++|..+++
T Consensus 128 aDsILlYa~~rp~FVvD~Yt~R~l~rlg~i~~k~ydeik~~fe~~l~~~~~lyqe~HAlIv~~~K 192 (215)
T COG2231 128 ADSILLYALDRPVFVVDKYTRRLLSRLGGIEEKKYDEIKELFEENLPENLRLYQEFHALIVEHAK 192 (215)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHhcccccccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 334443332 3335667777666666666 44 57777777775 2322 2335555555444
No 410
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.65 E-value=2.5e+02 Score=23.73 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHH--cCCCCCCccHHHHHHHhhhhccchh
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLK--TGLRPDNLTYPFVVKASDQCLLIGV 117 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~li~~~~~~~~~~~ 117 (162)
+++.+|..+|++..+..+++.... .|-..-...||..|+...+.|+++-
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l 83 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL 83 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH
Confidence 789999999999999999988754 3434444568888999999887653
No 411
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=33.54 E-value=2.3e+02 Score=21.96 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=75.1
Q ss_pred HHHhhC-CCChHHHHHHhhhhC----------CChhHHHHHHHHHHcCCCchHHHHHHHHHHH----cCCCCCCccHHHH
Q 045917 41 FILTSL-PISLHFTRSLFNNVM----------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK----TGLRPDNLTYPFV 105 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~t~~~l 105 (162)
+-.++. .+.++.+.+-|+..- .-...|-.+=+.|++..|.++|.-+..+..+ .++.--..-|..+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 334444 677888887777543 2356688888888999999999877766432 1322222224333
Q ss_pred -----HHHhhhhccchhhhHHHHHHHHHhc-CcchhHH----HHHHHHHHhcCChhHHHHhhc
Q 045917 106 -----VKASDQCLLIGVGGSVHSLIFKVGL-HSDKYIG----NTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 106 -----i~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~----~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.-++...|.+.+|.+.-++..+..+ ..|..++ .++-+.|-..|+.|.|.+-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 3456677888888887776654332 2344443 456677888899888876654
No 412
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.52 E-value=1.5e+02 Score=20.85 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=50.9
Q ss_pred hcchhHHHHHhcC----CCchhHH-HHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHH
Q 045917 19 HHQLPALFLKTSL----DHNTYII-SRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 19 a~~~~~~~~~~~~----~~~~~~~-~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
..+++-.+...+. .|=...+ .+|-.++. .|-.++|..+++.+. .....-.-++..|++..+.++..++=++
T Consensus 126 h~RLLP~lVAANpVNYGrP~rLnCvEAlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~ 205 (263)
T KOG3154|consen 126 HERLLPYLVAANPVNYGRPWRLNCVEALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNE 205 (263)
T ss_pred cccccchhhhcCccccCCCceecHHHHHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHH
Confidence 4566666665442 2333333 44444555 999999999999998 3344456789999999999988877666
Q ss_pred HHH
Q 045917 90 MLK 92 (162)
Q Consensus 90 m~~ 92 (162)
.++
T Consensus 206 ~Le 208 (263)
T KOG3154|consen 206 FLE 208 (263)
T ss_pred HHH
Confidence 544
No 413
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=2e+02 Score=21.39 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=32.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-------HHHHHHHhhhhccchhhhH
Q 045917 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-------YPFVVKASDQCLLIGVGGS 120 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~li~~~~~~~~~~~a~~ 120 (162)
-+...+.++.++|...|.+...+|+.-+.-+ ...+.+-|...|+.....+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3445667788888888888887777655433 4446666666666544443
No 414
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.35 E-value=2.4e+02 Score=22.09 Aligned_cols=56 Identities=9% Similarity=-0.064 Sum_probs=30.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhc--CCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTS--LDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
+...+..||++..|.+.|...+..- .......|-.+|.... .|++.++...-.+..
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 4445566777777777776654432 1233444555555555 666655555544443
No 415
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.29 E-value=97 Score=17.63 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=11.1
Q ss_pred HHHHHhhhhC----CChhHHHHHHHHHHc
Q 045917 52 FTRSLFNNVM----PPLFAYNTLIRAYAK 76 (162)
Q Consensus 52 ~a~~~~~~m~----~~~~~~~~li~~~~~ 76 (162)
.|..++.+.+ .++..||++-..+.+
T Consensus 15 mA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 15 MAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 3444444443 344445554444433
No 416
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=32.99 E-value=2.3e+02 Score=21.79 Aligned_cols=120 Identities=4% Similarity=-0.122 Sum_probs=73.2
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCc------------hhHH--HHHHHhhC-CCChHHHHHHhhhhC----CChhHHH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHN------------TYII--SRFILTSL-PISLHFTRSLFNNVM----PPLFAYN 68 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~--~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~ 68 (162)
+++-+.|.+++|..-|+.+.+...... ...+ ...+..+. .|+...|......+- =|...|.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 345566788888888888876554221 1112 22333444 888888877777654 3666777
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
.--.+|...|++..|..=++..-...- -|..++--+-.-+-..|+.+......++..+.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 777888889999888755444322211 12233333444455677777777777776664
No 417
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=32.95 E-value=1.9e+02 Score=20.80 Aligned_cols=142 Identities=8% Similarity=0.028 Sum_probs=77.6
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHc--CCCchHHHHHHH
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAK--TSCSIESIKLFD 88 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~--~~~~~~a~~~~~ 88 (162)
.+.|.++.+.+.+.. +-.+..+-.-++.+. .++.+.+.+++..|. + ....+...+..+.. ......+...++
T Consensus 103 ~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld 181 (278)
T PF08631_consen 103 VEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLD 181 (278)
T ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 344666666664333 223444555566666 788889999998887 2 45667776666632 244567778888
Q ss_pred HHHHcCCCCCCc-cHHHH-HH---Hhhhhcc------chhhhHHHHHHHH-HhcCcchhHHHHH-------HHHHHhcCC
Q 045917 89 EMLKTGLRPDNL-TYPFV-VK---ASDQCLL------IGVGGSVHSLIFK-VGLHSDKYIGNTL-------LRMYAACKE 149 (162)
Q Consensus 89 ~m~~~~~~p~~~-t~~~l-i~---~~~~~~~------~~~a~~i~~~~~~-~~~~~~~~~~~~l-------l~~y~~~g~ 149 (162)
.+....+.|... -...+ +. ...+.++ ++...+++..+.+ .+.+.+..+-.++ .....+.++
T Consensus 182 ~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~ 261 (278)
T PF08631_consen 182 YLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKN 261 (278)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 877666666553 11111 11 1112222 3333344443322 2223333333332 233457889
Q ss_pred hhHHHHhhc
Q 045917 150 IDFAKALFD 158 (162)
Q Consensus 150 ~~~a~~~~~ 158 (162)
+++|.+.|+
T Consensus 262 y~~A~~w~~ 270 (278)
T PF08631_consen 262 YDEAIEWYE 270 (278)
T ss_pred HHHHHHHHH
Confidence 999988775
No 418
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.35 E-value=2.4e+02 Score=21.82 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=65.4
Q ss_pred cchhHHHHHhcCCCchhH--HHHHHHh-----hC-CCChHHHHHHhhhhC----CChhHHHHHHHHHH-cCCCchHHHHH
Q 045917 20 HQLPALFLKTSLDHNTYI--ISRFILT-----SL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYA-KTSCSIESIKL 86 (162)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~--~~~ll~~-----~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~-~~~~~~~a~~~ 86 (162)
.++.+.+.+.|..|+... ....+.. .. .+..+-+.-+++.-. ++....+.+..+.. ..|+. ++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~----~i 123 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY----SI 123 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----HH
Confidence 345666777777665322 1233333 44 666666666655432 33333444444442 44443 34
Q ss_pred HHHHHHcCCCCCCc---cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchh--HHHHHHHHHHhcCChhHHHHhhc
Q 045917 87 FDEMLKTGLRPDNL---TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY--IGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 87 ~~~m~~~~~~p~~~---t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++.+.+.|..++.. -.+. +..++..|. .-.++.+.+.+.|..++.. .-.+.+...+..|+.+-+.-+++
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~ 197 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENL-LHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLD 197 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcH-HHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 45555566655432 2333 333344441 1233455566666544322 22345666677777766665554
No 419
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=32.10 E-value=82 Score=20.45 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 108 (162)
+-|...+..+ ...|-..++..++++|.++|+..+..+|+..+.-
T Consensus 110 ~GtlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 110 TGTLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred eehhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3444444444 4457888888999999999999998888777654
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.92 E-value=1.4e+02 Score=22.61 Aligned_cols=102 Identities=20% Similarity=0.148 Sum_probs=55.8
Q ss_pred CCChHHHHHHhhhhC-CCh---hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc---cHHHHHHHhhhhccchhhh
Q 045917 47 PISLHFTRSLFNNVM-PPL---FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL---TYPFVVKASDQCLLIGVGG 119 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~li~~~~~~~~~~~a~ 119 (162)
.|+.+-+..+++.-. |+. .-++ .+...+..|+.+ +.+.+.+.|..|+.. ..+.+. ..+..|+.+.++
T Consensus 12 ~g~~~iv~~Ll~~g~~~n~~~~~g~t-pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~-~A~~~g~~~~v~ 85 (413)
T PHA02875 12 FGELDIARRLLDIGINPNFEIYDGIS-PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELH-DAVEEGDVKAVE 85 (413)
T ss_pred hCCHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHH-HHHHCCCHHHHH
Confidence 778888877776533 332 2233 444445566654 445556667666533 233344 445667766544
Q ss_pred HHHHHHHHHhcCcchh---HHHHHHHHHHhcCChhHHHHhhc
Q 045917 120 SVHSLIFKVGLHSDKY---IGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~---~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.+ .+.|...+.. .-.+.+..-+..|+.+-+..+++
T Consensus 86 ~L----l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~ 123 (413)
T PHA02875 86 EL----LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA 123 (413)
T ss_pred HH----HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh
Confidence 44 3444322111 12456666777888887777665
No 421
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=31.62 E-value=92 Score=18.96 Aligned_cols=35 Identities=6% Similarity=-0.131 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHH--HcCCCCCCccHHHHHHHhhhh
Q 045917 78 SCSIESIKLFDEML--KTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 78 ~~~~~a~~~~~~m~--~~~~~p~~~t~~~li~~~~~~ 112 (162)
|+.++....+-.+. ..+...+...+...++++...
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~r 97 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHR 97 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 55555554443332 445566666666666655543
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=31.19 E-value=1.7e+02 Score=22.36 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=27.8
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCc--cHHHHHHHhh--hhccchhhhHHHHHHHHH
Q 045917 76 KTSCSIESIKLFDEMLKTGLRPDNL--TYPFVVKASD--QCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~li~~~~--~~~~~~~a~~i~~~~~~~ 128 (162)
+.+++..|.++|+++.+. ++++.. .+..+.++|. ..-++++|.+.++.....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567777777777777665 444444 2222223322 234455666666555443
No 423
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=31.17 E-value=2.9e+02 Score=22.41 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=41.3
Q ss_pred hHHHHHHHhhCCCChHHHHHHhhhhC-C--ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 045917 36 YIISRFILTSLPISLHFTRSLFNNVM-P--PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95 (162)
Q Consensus 36 ~~~~~ll~~~~~~~~~~a~~~~~~m~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 95 (162)
..+..|+.....=+.++-..+++++. . ....++.++.+....|-...+.-+.+.+....+
T Consensus 347 ~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~ 409 (618)
T PF01347_consen 347 SKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL 409 (618)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 35777777776556777888888887 4 578899999999999887766555555555444
No 424
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.02 E-value=1.2e+02 Score=18.01 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
-+...+++..-++.. ....|+..|+.++.+.+.-..|+.+-+.+...|
T Consensus 47 ~eq~~qmL~~W~~~~--G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKT--GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 455555555544321 235567788888877777777777776666655
No 425
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.89 E-value=3.5e+02 Score=23.39 Aligned_cols=80 Identities=9% Similarity=-0.071 Sum_probs=53.2
Q ss_pred hchhhhcchhHHHHHhcCCCch-------hHHHHHHHhhC--CCChHHHHHHhhhhC---------CChhHHHHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNT-------YIISRFILTSL--PISLHFTRSLFNNVM---------PPLFAYNTLIRAYA 75 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~--~~~~~~a~~~~~~m~---------~~~~~~~~li~~~~ 75 (162)
.++.+|..+..++...-..|+. ..++++-.... .|+++.|..+-+..- +..+.+.++-.+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 4777888887777654433321 23555554444 788888877766543 56777777777887
Q ss_pred cCCCchHHHHHHHHHHHc
Q 045917 76 KTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~ 93 (162)
-.|++.+|..+.++-.+.
T Consensus 509 ~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 509 IRGELTQALALMQQAEQM 526 (894)
T ss_pred HhchHHHHHHHHHHHHHH
Confidence 889999998887665443
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.02 E-value=3.7e+02 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
-|..|+-.|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 699999999999999999999999865
No 427
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=29.89 E-value=29 Score=20.11 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=12.3
Q ss_pred HcCCCCCCccHHHHHHHhhhhccc
Q 045917 92 KTGLRPDNLTYPFVVKASDQCLLI 115 (162)
Q Consensus 92 ~~~~~p~~~t~~~li~~~~~~~~~ 115 (162)
+-.+.-+..+|..+|++|++.|..
T Consensus 17 QYeLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 17 QYELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HHTTTTTTTB------TTSS--EE
T ss_pred HHHhhcccceeeeeecccccceEE
Confidence 445677899999999999999873
No 428
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=29.62 E-value=53 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.612 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHcCCCCCCcc
Q 045917 81 IESIKLFDEMLKTGLRPDNLT 101 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t 101 (162)
..|+++|+-+.+.|++||..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 468999999999999998554
No 429
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.45 E-value=1.2e+02 Score=17.41 Aligned_cols=45 Identities=4% Similarity=-0.058 Sum_probs=28.0
Q ss_pred CCCchHHHHHHHHH---HHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 77 TSCSIESIKLFDEM---LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 77 ~~~~~~a~~~~~~m---~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
.|+.++|+..|+.- ...|+..... ..+....++.|.++...|.+.
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHHH
Confidence 47888888888763 3345433222 234555678888887777654
No 430
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.41 E-value=1.5e+02 Score=19.21 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 78 SCSIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
.+..+...++.+.....-+.. -.-..-|.-++.+.++++.+.++.+.+.+.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344445555555543211111 111223444555666666666666555543
No 431
>PRK14700 recombination factor protein RarA; Provisional
Probab=29.30 E-value=2.4e+02 Score=20.90 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=40.1
Q ss_pred HHHHHHcC---CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc-----chhhhHHHHHHHHHhc
Q 045917 70 LIRAYAKT---SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL-----IGVGGSVHSLIFKVGL 130 (162)
Q Consensus 70 li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-----~~~a~~i~~~~~~~~~ 130 (162)
+|+++.|+ .|++.|+=.+-.|.+.|-.|....=..++-++-..|. +..|...++....-|.
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 46777664 6888888888889888888876666666666666664 2333444445555554
No 432
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=29.16 E-value=1.8e+02 Score=19.50 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=35.7
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC--CC-hhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM--PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
.+..++..++. .|-.++|..+..... ++ ...-..++..|.+..+..+..++=++-.+
T Consensus 116 ss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVveiq~~~l~ 176 (179)
T COG2042 116 SSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVVEIQEEYLE 176 (179)
T ss_pred chHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHHHHHHHHHh
Confidence 34456666666 777888888777776 33 33344577777777666666666555443
No 433
>PRK05629 hypothetical protein; Validated
Probab=28.72 E-value=2.4e+02 Score=20.70 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=46.3
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC--CCChHHHHH-HhhhhC------------CChhHHHH--HHHHHHcCCCchHHH
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL--PISLHFTRS-LFNNVM------------PPLFAYNT--LIRAYAKTSCSIESI 84 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~a~~-~~~~m~------------~~~~~~~~--li~~~~~~~~~~~a~ 84 (162)
+-+.+++.|...++.....|+..+. .+.+....+ +.-... ++...++. ++. ..-.|+..+|.
T Consensus 135 i~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~d-Av~~g~~~~Al 213 (318)
T PRK05629 135 VTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIAD-LACAGQVSKAV 213 (318)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHH-HHHcCCHHHHH
Confidence 4456677888888888887877766 333222222 211000 12222222 222 23468999999
Q ss_pred HHHHHHHHcCCCCCC
Q 045917 85 KLFDEMLKTGLRPDN 99 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~ 99 (162)
.+++++...|..|-.
T Consensus 214 ~~l~~l~~~g~~pi~ 228 (318)
T PRK05629 214 ASTRRALQLGVSPVA 228 (318)
T ss_pred HHHHHHHHcCCCcHH
Confidence 999999999998844
No 434
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.39 E-value=3e+02 Score=21.79 Aligned_cols=103 Identities=10% Similarity=0.074 Sum_probs=55.5
Q ss_pred HHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC------------------CChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 27 LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM------------------PPLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 27 ~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
...|+..+......+.... .|++..+...++.+. ........++.+. +.++++.|+.++.
T Consensus 190 ~~egi~i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si-~~~d~~~Al~~l~ 267 (472)
T PRK14962 190 EAEGIEIDREALSFIAKRA-SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAI-FNGDVKRVFTVLD 267 (472)
T ss_pred HHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 3456666655555544422 456555655555431 1122233344433 4589999999999
Q ss_pred HHHHcCCCCCCccHHHHHHHhhhhccch------hhhHHHHHHHHHhcC
Q 045917 89 EMLKTGLRPDNLTYPFVVKASDQCLLIG------VGGSVHSLIFKVGLH 131 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~~li~~~~~~~~~~------~a~~i~~~~~~~~~~ 131 (162)
+|...|..|....=..+..++-..|..+ .+..+++...+-|++
T Consensus 268 ~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~ 316 (472)
T PRK14962 268 DVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFA 316 (472)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCc
Confidence 9999988887654333333333333322 333344444455553
No 435
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.23 E-value=4.1e+02 Score=23.26 Aligned_cols=119 Identities=12% Similarity=-0.008 Sum_probs=62.2
Q ss_pred HHHhhC-CCChHHHHHHhhhhC--------CChhHHHHHHHHHHc-CCCchHHHHHHHHHHHcCCCCCCccHHHHH----
Q 045917 41 FILTSL-PISLHFTRSLFNNVM--------PPLFAYNTLIRAYAK-TSCSIESIKLFDEMLKTGLRPDNLTYPFVV---- 106 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~--------~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~t~~~li---- 106 (162)
.++-+. .+++.+|+.+.+.-+ .+...|-.=+..+.+ .++.+.---++.++++.++.-. .|....
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~t--mY~~~~~~~~ 777 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKT--MYKDTYPPSS 777 (928)
T ss_pred HHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccc--cccccccccc
Confidence 344455 888999988888665 334443333444444 2555544455555554433221 111111
Q ss_pred -----HHhhhhccchhhhHHHHHHHHHhc-Ccc-hhHHHHHHHHHHhcC--ChhHHHHhhcccC
Q 045917 107 -----KASDQCLLIGVGGSVHSLIFKVGL-HSD-KYIGNTLLRMYAACK--EIDFAKALFDEMP 161 (162)
Q Consensus 107 -----~~~~~~~~~~~a~~i~~~~~~~~~-~~~-~~~~~~ll~~y~~~g--~~~~a~~~~~~m~ 161 (162)
..-.....-.+...+.+.+.+.-. ..+ ..-..++|.+|++.+ ++++|++...+++
T Consensus 778 ~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~ 841 (928)
T PF04762_consen 778 EAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELR 841 (928)
T ss_pred ccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 000011122344445555544321 223 344578889999998 8889988877654
No 436
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=27.83 E-value=34 Score=18.14 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
=.++..++|+.|....-.|....|+-.++=|.
T Consensus 7 y~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 7 YHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred CCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 34556677777766666666666665555444
No 437
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.82 E-value=3.3e+02 Score=21.99 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=56.4
Q ss_pred HHHHHHHhhch-------hhhcchhHHH-HHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC---CChhHHHH-----
Q 045917 6 IETLIQLSKTA-------HHHHQLPALF-LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM---PPLFAYNT----- 69 (162)
Q Consensus 6 ~~~~l~~~~~~-------~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~---~~~~~~~~----- 69 (162)
..+++.+|.++ ++....++.+ .+.|+..+......+-+. +.|-+.++..+++++. ...++...
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~-a~Gs~RDalslLDq~i~~~~~~It~~~v~~~l 241 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA-AEGSLRDALSLLDQAIAFGEGEITLESVRDML 241 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH-cCCChhhHHHHHHHHHHccCCcccHHHHHHHh
Confidence 34667777633 2333334333 567777776555544322 1777888888888775 11222222
Q ss_pred ----------HHHHHHcCCCchHHHHHHHHHHHcCCCCCCc
Q 045917 70 ----------LIRAYAKTSCSIESIKLFDEMLKTGLRPDNL 100 (162)
Q Consensus 70 ----------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 100 (162)
++.+ ...+|..+++..++++.+.|..|...
T Consensus 242 G~~~~~~~~~~~~~-i~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 242 GLTDIEKLLSLLEA-ILKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred CCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcCHHHH
Confidence 2222 23589999999999999999877544
No 438
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.50 E-value=2.4e+02 Score=20.36 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=10.2
Q ss_pred hcCChhHHHHhhcc
Q 045917 146 ACKEIDFAKALFDE 159 (162)
Q Consensus 146 ~~g~~~~a~~~~~~ 159 (162)
..+++.+|.++|++
T Consensus 166 ~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHHHHHHHHHH
Confidence 36777788888765
No 439
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=27.47 E-value=32 Score=21.58 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=18.1
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCccH
Q 045917 77 TSCSIESIKLFDEMLKTGLRPDNLTY 102 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~p~~~t~ 102 (162)
.|+...|.++++.++..|++|-...|
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 58888888888888888888865554
No 440
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=27.45 E-value=97 Score=16.57 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=12.4
Q ss_pred hhhcchhHHHHHhcCCC
Q 045917 17 HHHHQLPALFLKTSLDH 33 (162)
Q Consensus 17 ~~a~~~~~~~~~~~~~~ 33 (162)
+.+.++|+.|.+.|+-|
T Consensus 45 ~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 45 QMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 45677888888888654
No 441
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=27.34 E-value=2.5e+02 Score=20.53 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=46.0
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC--CCChHH-HHH--Hh--h-h--h---------C-CChhHHHHHHHHHHcCCCch
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL--PISLHF-TRS--LF--N-N--V---------M-PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~-a~~--~~--~-~--m---------~-~~~~~~~~li~~~~~~~~~~ 81 (162)
+-+.+.+.|...++.....|+.... ...+.. ..+ +| . . + . .....|. ++.+... |+..
T Consensus 139 i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~~~~if~-l~dai~~-~~~~ 216 (326)
T PRK07452 139 VERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNTTQNSLQ-LADALLQ-GNTG 216 (326)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccCcCcHHH-HHHHHHC-CCHH
Confidence 3455567788888888777777655 222211 111 12 0 0 1 0 2233454 5555544 8999
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 045917 82 ESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~ 99 (162)
+|..+++.+...|..|-.
T Consensus 217 ~A~~~l~~L~~~g~~p~~ 234 (326)
T PRK07452 217 KALALLDDLLDANEPALR 234 (326)
T ss_pred HHHHHHHHHHHCCCcHHH
Confidence 999999999998887743
No 442
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=27.31 E-value=1.6e+02 Score=18.99 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL 46 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 46 (162)
...+..+-.......+.++++.+++.|+..+..|....++-..
T Consensus 4 ~~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 4 QERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 3445555566677888999999999999998888777776555
No 443
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=27.25 E-value=1.3e+02 Score=17.11 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=23.2
Q ss_pred chhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 115 ~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
...+.+++..+.+.|. .+..-...|...+...|+.|-+.++.
T Consensus 36 ~~~~~dlf~~Le~~~~-i~~~nl~~L~~lL~~i~R~DL~~~i~ 77 (84)
T PF01335_consen 36 IKSGLDLFEELEKRGL-ISPDNLSLLKELLKRIGRPDLLKKIE 77 (84)
T ss_dssp TSSHHHHHHHHHHTTS-SSTTBHHHHHHHHHHTT-HHHHHHHH
T ss_pred hchHHHHHHHHHHcCC-CCCccHHHHHHHHHHhCHHHHHHHHH
Confidence 3455566666666654 23333455666666666666666554
No 444
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.97 E-value=81 Score=20.57 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 132 SDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 132 ~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
|+...|..++.+|.-.++.+.|+-+|.++|
T Consensus 37 ~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP 66 (197)
T KOG4414|consen 37 HDDWPYAIHLAGYFLHDDCDNARFLWKRIP 66 (197)
T ss_pred CCcchHHHHHHHHHHhccchhHHHHHHhCC
Confidence 344455556666666666666665555543
No 445
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.86 E-value=1.4e+02 Score=18.39 Aligned_cols=87 Identities=10% Similarity=-0.073 Sum_probs=43.9
Q ss_pred hhhcchhHHHH-HhcCCC-chhHHHHHHHhhC-CCChHHHHHHhh-hhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 17 HHHHQLPALFL-KTSLDH-NTYIISRFILTSL-PISLHFTRSLFN-NVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 17 ~~a~~~~~~~~-~~~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~-~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
+++.+.+..++ +.|+.| +...-=++...+. ...+.....-.+ ..+-+-.|| .|+..+....+-.+.-
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~~~~~d~g~e~~~~t~---------~Ge~~~~~~~ll~q~~ 76 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDEDIKDDSGLELNWKTF---------TGEYDDIYEALLKQRY 76 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCCccCCCCCeEEeeeee---------cCchHHHHHHHHHHHh
Confidence 34556666664 567888 6655555555544 332321100000 000111111 1666766665555554
Q ss_pred cCCCCCCccHHHHHHHhhhhc
Q 045917 93 TGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 93 ~~~~p~~~t~~~li~~~~~~~ 113 (162)
|...|..++...++.+...|
T Consensus 77 -g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 77 -GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred -CCCCCHHHHHHHHHHHHHHh
Confidence 66667777777777666543
No 446
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=26.69 E-value=2.4e+02 Score=20.05 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=54.1
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHH----hcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC--------CChhHHH
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLK----TSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM--------PPLFAYN 68 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~--------~~~~~~~ 68 (162)
+.+...+.+-...++..++.+.+.. .|..++......++.+++ .+-+.++..+++... ++...=.
T Consensus 15 ~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~~~~~~q~ 94 (253)
T PF09090_consen 15 QKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELEAESEEAQF 94 (253)
T ss_dssp HHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-TSSHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccCChHHHH
Confidence 4455566655555555555544433 233556788888999888 555777777666554 3434444
Q ss_pred HHHHHHHc--CCCchHHHHHHHHHHHcCCCCC
Q 045917 69 TLIRAYAK--TSCSIESIKLFDEMLKTGLRPD 98 (162)
Q Consensus 69 ~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~ 98 (162)
.+|.+-.+ ..++.-+.-+.+.|.+.++...
T Consensus 95 ~il~~v~~~W~~~~q~~~li~dkll~~~ii~~ 126 (253)
T PF09090_consen 95 WILDAVFRFWKNNPQMGFLIIDKLLNYGIISP 126 (253)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHHHHhcCCceehHHHHHHHhcCCCCH
Confidence 45554443 5778888899999988876543
No 447
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=26.62 E-value=2.7e+02 Score=20.66 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=44.5
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC-----------------CChhHHHH-HHHHHHcCCCchHH
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM-----------------PPLFAYNT-LIRAYAKTSCSIES 83 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~-----------------~~~~~~~~-li~~~~~~~~~~~a 83 (162)
+-+...+.|+..+......|+..+. |+...+..-++... .+..+++. =+.-+...|+..+|
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~-~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a 227 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG-GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKA 227 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHH
Confidence 3455567888888777777766554 33333332222221 11111221 12233457999999
Q ss_pred HHHHHHHHHcCCCCC
Q 045917 84 IKLFDEMLKTGLRPD 98 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~ 98 (162)
..+++++...|.+|-
T Consensus 228 ~~~l~~L~~~ge~p~ 242 (334)
T COG1466 228 LRLLRDLLLEGEEPL 242 (334)
T ss_pred HHHHHHHHHcCCcHH
Confidence 999999999888773
No 448
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.60 E-value=4.3e+02 Score=22.99 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=66.8
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC--CC------hhHHHHHHHHHHcCCCc--hHHHHHHHHHHHcCCCCCCccHHH--
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM--PP------LFAYNTLIRAYAKTSCS--IESIKLFDEMLKTGLRPDNLTYPF-- 104 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~--~~------~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~t~~~-- 104 (162)
|..|+..|. .|+-++|..+|.+.. +. ...+.-++.-+.+.+.. +-.++.-++..+..-.-....|+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 899999999 999999999999887 31 12233345544444444 555555555544332222222222
Q ss_pred ----------HHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc
Q 045917 105 ----------VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 105 ----------li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~ 147 (162)
-+-.+.+...-..+..+++.+....-.++....+.++..|++.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1222334444555666677766655556778889999999864
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.45 E-value=3.2e+02 Score=21.42 Aligned_cols=62 Identities=11% Similarity=-0.161 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC---CccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD---NLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
...+.-+-.+|...|+++.|++.|.+.+.- ++.. ...|-.+|....-.|+|.+...+.....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 344666677777777777777777763321 2222 2233444555555666666655554443
No 450
>PRK09857 putative transposase; Provisional
Probab=26.37 E-value=2.6e+02 Score=20.44 Aligned_cols=25 Identities=4% Similarity=-0.419 Sum_probs=10.5
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHH
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
..++......++.++..++++.+.+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~ 234 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAE 234 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHH
Confidence 3344333344444444444444433
No 451
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.34 E-value=1.1e+02 Score=24.16 Aligned_cols=19 Identities=32% Similarity=0.782 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHcCCCCCCc
Q 045917 82 ESIKLFDEMLKTGLRPDNL 100 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~ 100 (162)
-|.+++.++.+.|+.||..
T Consensus 243 Naaei~~~l~~r~~~pD~v 261 (561)
T COG2987 243 NAAEILPELLRRGIRPDLV 261 (561)
T ss_pred cHHHHHHHHHHcCCCCcee
Confidence 3444555555555555433
No 452
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=25.46 E-value=3.2e+02 Score=22.30 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
+.+..-|..++.-|. .+++++|.++.+-.+ ....|.++-....++.+..-++..|...
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv~-eqTMWAtlAa~Av~~~~m~~~EiAYaA~ 628 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFVQ-EQTMWATLAAVAVRKHQMQISEIAYAAA 628 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhcc-chHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 345556888888888 999999999987665 3335555555555555555444444433
No 453
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=25.28 E-value=71 Score=23.32 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=28.3
Q ss_pred CChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 045917 48 ISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95 (162)
Q Consensus 48 ~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 95 (162)
-+++..+++++..+ |+..|=+.+|-+++.. .++..++++++...|+
T Consensus 194 A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt--~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 194 ATYERSLSLLERAKELGPDIPTKSGLMVGLGET--DEEVIEVMDDLRSAGV 242 (306)
T ss_pred CcHHHHHHHHHHHHHhCCCcccccceeeecCCc--HHHHHHHHHHHHHcCC
Confidence 34555555555555 6677777777666543 4566666666666665
No 454
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=25.18 E-value=53 Score=19.00 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCC--chHHHHHHHHHHHcCCCCCCccHHHHH
Q 045917 66 AYNTLIRAYAKTSC--SIESIKLFDEMLKTGLRPDNLTYPFVV 106 (162)
Q Consensus 66 ~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~li 106 (162)
..|+++..+...|. +++-.+..+.-....+.|+...|+++.
T Consensus 3 ~LNn~~~~~~~~G~~~l~kD~eA~~~y~~~~V~pnt~~F~S~~ 45 (82)
T PF08343_consen 3 ELNNELNIYDEDGKIQLEKDKEAVRAYFKEHVNPNTVKFNSLK 45 (82)
T ss_dssp HHHHGGG---TTS---THHHHHHHHHHHHHTTGGGB---SSHH
T ss_pred HHHHHHcCCCCCCCcCchhHHHHHHHHHHHhcccceeecCCHH
Confidence 45666666666665 455555566656667888888887764
No 455
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=24.92 E-value=2.6e+02 Score=21.49 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=33.2
Q ss_pred hhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 44 TSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 44 ~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
.|. .|++++|...|..-. | +.+++..--.+|.+...+..|..=....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 456 788888888887655 5 7778877777888877776655444443
No 456
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=24.91 E-value=61 Score=21.26 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcC-CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 81 IESIKLFDEMLKTG-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 81 ~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
++=+.++.++++.| +......--.-|....+.++++.|.+|+..+...
T Consensus 71 ~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 71 EKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33344444444444 3333222222233344678899999988887654
No 457
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=24.26 E-value=35 Score=17.63 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=15.8
Q ss_pred cCCCchHHHHHHHHHHHcC-CCCC
Q 045917 76 KTSCSIESIKLFDEMLKTG-LRPD 98 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~-~~p~ 98 (162)
...|++.|...|.+++..| |+|+
T Consensus 25 n~Wd~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 25 NNWDYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp TTT-CCHHHHHHHHCCCTT-S-CC
T ss_pred cCCCHHHHHHHHHHHHHcCCCChH
Confidence 4678999999999887665 4444
No 458
>COG1084 Predicted GTPase [General function prediction only]
Probab=24.22 E-value=37 Score=25.33 Aligned_cols=55 Identities=7% Similarity=-0.050 Sum_probs=32.3
Q ss_pred CCchhHHHHHHHhhC------CCChHHHHH-------HhhhhC-CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 32 DHNTYIISRFILTSL------PISLHFTRS-------LFNNVM-PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~------~~~~~~a~~-------~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
..++...+.|.+.+. ..++++... .++.++ .|+.+.+.+|.||...|+..-.-.+
T Consensus 120 a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~l 188 (346)
T COG1084 120 AKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKL 188 (346)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHH
Confidence 345555555555433 233333333 344444 5667888899999999988744433
No 459
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=24.00 E-value=76 Score=18.35 Aligned_cols=28 Identities=4% Similarity=0.068 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHHHhc
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFLKTS 30 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~ 30 (162)
++.++.++...|..+-.+.+++++...+
T Consensus 5 Rs~Ll~vL~~~gs~e~~esvLD~LLs~e 32 (87)
T cd08787 5 RSELLEVLCSGGSLEPFESVLDWLLSQE 32 (87)
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHh
Confidence 4567778887888888888888876654
No 460
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=23.92 E-value=65 Score=21.60 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 123 SLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
..+.+.|+.+....+.-++..+++.=..+.+.++||
T Consensus 153 ~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD 188 (214)
T PF00566_consen 153 NHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD 188 (214)
T ss_dssp HHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH
Confidence 333444444444444445555544444444554444
No 461
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=23.78 E-value=1.2e+02 Score=15.58 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=12.0
Q ss_pred HcCCCchHHHHHHHHHHHcCCCC
Q 045917 75 AKTSCSIESIKLFDEMLKTGLRP 97 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~~p 97 (162)
...|--.+++.+.-++.+.|+.|
T Consensus 15 LntgLd~etL~ici~L~e~GVnP 37 (48)
T PF12554_consen 15 LNTGLDRETLSICIELCENGVNP 37 (48)
T ss_pred HcCCCCHHHHHHHHHHHHCCCCH
Confidence 33444455555555555555554
No 462
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=23.72 E-value=3.9e+02 Score=21.46 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHH-------HHH----HHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKL-------FDE----MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~-------~~~----m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
|....|+..+...+..|.+.+++.. |.+ +......++...|...|+.|...+--+.+..+...+.+..-
T Consensus 418 p~~~aY~~~l~~~a~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~ 497 (530)
T PRK14713 418 PVTLAYTDFLLARAAGGSYAVGAAAVLPCFWLYAEVGAELHARAGNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFR 497 (530)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 7788899999888888888775432 333 32211122346799999999844333333333444444333
Q ss_pred CcchhHHHHHHHHHHhcCChhH
Q 045917 131 HSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 131 ~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
..+......+.+.|.++=++|-
T Consensus 498 ~~s~~~~~~~~~~F~~a~~~E~ 519 (530)
T PRK14713 498 AASPAERAAMARAFLTACRYEL 519 (530)
T ss_pred hCCHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777655554
No 463
>PHA01754 hypothetical protein
Probab=23.30 E-value=1e+02 Score=16.57 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHcCCCCC
Q 045917 81 IESIKLFDEMLKTGLRPD 98 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~ 98 (162)
.++..+.++|++..++|-
T Consensus 47 ~EViKvvkemrr~~vkpv 64 (69)
T PHA01754 47 LEVVKVVKEMRRLQVKPV 64 (69)
T ss_pred HHHHHHHHHHHHcccCcc
Confidence 456678889988888773
No 464
>PF09520 RE_TdeIII: Type II restriction endonuclease, TdeIII; InterPro: IPR019045 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease MjaII, which recognises the double-stranded sequence GGNCC, but the cleavage site is unknown. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=23.08 E-value=2e+02 Score=20.63 Aligned_cols=83 Identities=6% Similarity=-0.067 Sum_probs=48.6
Q ss_pred CCchhHHHHHHHhhC--CCC--hHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 32 DHNTYIISRFILTSL--PIS--LHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~--~~~--~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
+++...++++++++. .|. ++..-.++.........-+.-+.+.......+...++..+....+..|+...++-.+.
T Consensus 49 ~~e~~~~ssf~rsl~TslG~s~fE~iA~ilA~~~~~~~~~q~~~~~~I~~~~~~~I~~i~~~l~~~~~~~~~~~~~~~i~ 128 (251)
T PF09520_consen 49 PKERMKLSSFERSLNTSLGQSIFEQIAKILAKGNGREAKRQYDVNGTISSQQQEKIDEIIDDLKSKGNKPNKPSEIEEIR 128 (251)
T ss_pred CHHHHHHHHHHHhccCcchHHHHHHHHHHHHhccchhhhhhhccccccCHHHHHHHHHHHHHHHhcccCCCcccHHHHHH
Confidence 445556777888877 565 5555555554431111111122233333334555566666766778899999988887
Q ss_pred Hhhhhcc
Q 045917 108 ASDQCLL 114 (162)
Q Consensus 108 ~~~~~~~ 114 (162)
..++.+.
T Consensus 129 ~~~~~~~ 135 (251)
T PF09520_consen 129 EICKKGN 135 (251)
T ss_pred HHHhcCc
Confidence 7776655
No 465
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=3.5e+02 Score=20.62 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc---CCCCCCccHHH--HHHHhhhhccchhhhHHHHHHHH-----HhcCcchh
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT---GLRPDNLTYPF--VVKASDQCLLIGVGGSVHSLIFK-----VGLHSDKY 135 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~--li~~~~~~~~~~~a~~i~~~~~~-----~~~~~~~~ 135 (162)
....++...-+.++.++|++.++++.+. -=+|+.+.|.. ..+.+-..|++.+++++..+..+ .++.|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3445566666678999999999999764 23466666644 34555567899999999888877 56666443
Q ss_pred H-HHHHHHHH-HhcCChhHH
Q 045917 136 I-GNTLLRMY-AACKEIDFA 153 (162)
Q Consensus 136 ~-~~~ll~~y-~~~g~~~~a 153 (162)
+ |..+=.-| -+.|++...
T Consensus 157 ~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHH
Confidence 3 33333333 335555543
No 466
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.79 E-value=2.7e+02 Score=19.24 Aligned_cols=54 Identities=4% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC----CC-hhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM----PP-LFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~----~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
..+.+++.+. .|+++.|.+.|.-+- .| ...|+.-+.-+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3577888888 999999999998775 22 234777777777777666665666665
No 467
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.63 E-value=5e+02 Score=22.40 Aligned_cols=90 Identities=14% Similarity=0.016 Sum_probs=52.5
Q ss_pred HHHHHHhhch-------hhhcchhHHH-HHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC-----------------
Q 045917 7 ETLIQLSKTA-------HHHHQLPALF-LKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM----------------- 61 (162)
Q Consensus 7 ~~~l~~~~~~-------~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~----------------- 61 (162)
.+++.+|..+ ++..+.+... .+.|+..+......|.+. +.|++..+..++++..
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~-A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG 242 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA-AQGSMRDALSLTDQAIAYSANEVTETAVSGMLG 242 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhC
Confidence 4566667422 2233333333 345666665444433322 2677778877765421
Q ss_pred -CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC
Q 045917 62 -PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 98 (162)
Q Consensus 62 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 98 (162)
.+...+..++..+. .++..+++.+++++...|..+.
T Consensus 243 ~~d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 243 ALDQTYMVRLLDALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 34444555555444 4889999999999988877653
No 468
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=22.55 E-value=1.9e+02 Score=19.22 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=30.0
Q ss_pred HHHHHHHH-cCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 85 KLFDEMLK-TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 85 ~~~~~m~~-~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
+++..+.+ .|+.|....+..++..+.+.-.++.+..+++.+...|
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 45555664 6777777777777777766666777777777665554
No 469
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=22.52 E-value=2.1e+02 Score=18.03 Aligned_cols=34 Identities=9% Similarity=-0.062 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 114 (162)
...+-+++...... .++...|..+||+-+++.|-
T Consensus 20 ~~t~~eI~~~l~~~-~ews~sTV~TLl~RL~KKg~ 53 (123)
T COG3682 20 PATVREIIEELPAD-REWSYSTVKTLLNRLVKKGL 53 (123)
T ss_pred CccHHHHHHHHhhc-ccccHHHHHHHHHHHHhccc
Confidence 44566666666554 56666777777777766554
No 470
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=22.43 E-value=39 Score=19.33 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
++...|.+. -|....+...++.+-+-++.+-|.++
T Consensus 47 ~la~lLv~~--y~~~~A~~vt~~il~~m~~~dLae~l 81 (83)
T PF02758_consen 47 DLADLLVQH--YGEQRAWEVTLKILEKMNRNDLAEKL 81 (83)
T ss_dssp HHHHHHHHH--TCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH--cCHHHHHHHHHHHHHHcChHHHHHHH
Confidence 344444443 35667777777777777777777654
No 471
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=3.8e+02 Score=20.87 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=12.8
Q ss_pred cCCCchhHHHHHHHhhC
Q 045917 30 SLDHNTYIISRFILTSL 46 (162)
Q Consensus 30 ~~~~~~~~~~~ll~~~~ 46 (162)
|-.||+..||..|.-.-
T Consensus 88 ~~~~D~d~wN~~L~~l~ 104 (434)
T KOG3870|consen 88 GEEPDIDSWNEFLKKLP 104 (434)
T ss_pred cCCCCHHHHHHHHHhCC
Confidence 34688999999997544
No 472
>PHA02884 ankyrin repeat protein; Provisional
Probab=22.24 E-value=3.2e+02 Score=20.17 Aligned_cols=86 Identities=10% Similarity=0.066 Sum_probs=41.4
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CCh-------hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc----cHHH
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PPL-------FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL----TYPF 104 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ 104 (162)
++.++.... .|..+-+..+++.=. ++. .-.+.+.. .++.|+.+ +.+-+.+.|..+|.. -.+.
T Consensus 33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~-Aa~~~~~e----ivklLL~~GADVN~~~~~~g~Tp 107 (300)
T PHA02884 33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIY-AIDCDNDD----AAKLLIRYGADVNRYAEEAKITP 107 (300)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCcCcccCCCCCCH
Confidence 455555555 677777776666433 332 23333433 34455543 334445566666642 1233
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHhcCcc
Q 045917 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSD 133 (162)
Q Consensus 105 li~~~~~~~~~~~a~~i~~~~~~~~~~~~ 133 (162)
+. ..+..|.. ++...+...|..++
T Consensus 108 Lh-~Aa~~~~~----eivklLL~~GAdin 131 (300)
T PHA02884 108 LY-ISVLHGCL----KCLEILLSYGADIN 131 (300)
T ss_pred HH-HHHHcCCH----HHHHHHHHCCCCCC
Confidence 33 33333333 34455556665544
No 473
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.22 E-value=1.3e+02 Score=23.73 Aligned_cols=20 Identities=5% Similarity=-0.208 Sum_probs=9.6
Q ss_pred HHHHhhhhccchhhhHHHHH
Q 045917 105 VVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 105 li~~~~~~~~~~~a~~i~~~ 124 (162)
-|++|.+.+++++|+...+.
T Consensus 92 TIDSyTR~n~y~~A~~~l~~ 111 (480)
T TIGR01503 92 TIDAYTRQNRYDEAAVGIKE 111 (480)
T ss_pred eeecccccccHHHHHHHHHh
Confidence 34555555555555444433
No 474
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=22.21 E-value=3.4e+02 Score=20.24 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=12.0
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
..|++.|. .|.+++|..+.....
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHH
Confidence 34455555 555555555555443
No 475
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.18 E-value=3.8e+02 Score=21.43 Aligned_cols=62 Identities=6% Similarity=0.008 Sum_probs=38.2
Q ss_pred HcCCCchHHHHHHHHHHHcC---CC----------CCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhH
Q 045917 75 AKTSCSIESIKLFDEMLKTG---LR----------PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~---~~----------p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 136 (162)
...|++.+|+.++++....+ +. ++...+..++++....+....+..++..+...|..|..++
T Consensus 211 ~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 211 KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 34689999999988754321 11 1222234445554444445678888888888887666554
No 476
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.07 E-value=4e+02 Score=21.01 Aligned_cols=122 Identities=9% Similarity=-0.008 Sum_probs=73.4
Q ss_pred hhHHHHHHHhhC--CCChHHHHHHhhhhC--CChhHHHHHHHHHHc--CCCchHHHHHHHHHHHcCCCCCCccHHHHH--
Q 045917 35 TYIISRFILTSL--PISLHFTRSLFNNVM--PPLFAYNTLIRAYAK--TSCSIESIKLFDEMLKTGLRPDNLTYPFVV-- 106 (162)
Q Consensus 35 ~~~~~~ll~~~~--~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~li-- 106 (162)
-.++-.+=.-|. .|+.++|...=-... -.+..+...+++.+- .++.+.+..-|++-++ +.|+...--.+-
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMM 245 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhh
Confidence 344444444444 777777766544443 233344555555443 4666777777766554 334433322221
Q ss_pred -----------HHhhhhccchhhhHHHHHHHHH---hcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 107 -----------KASDQCLLIGVGGSVHSLIFKV---GLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 107 -----------~~~~~~~~~~~a~~i~~~~~~~---~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+-..+.|++.+|.+.+.+.... ...|+...|...-.+..+.|+.++|..-.+
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 1234578899999988887653 346677778777778889999999876544
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.06 E-value=84 Score=14.58 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHH
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPF 104 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~ 104 (162)
++.|..+|+.... +-|+..+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4566666666654 2366555543
No 478
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=21.95 E-value=1.4e+02 Score=24.82 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=42.9
Q ss_pred cCCCCCCccHHHHHHHhhhhcc----chhhhHHHHHHHH----HhcCc---chhHHHHHHHHHHhcCChhHHHHh
Q 045917 93 TGLRPDNLTYPFVVKASDQCLL----IGVGGSVHSLIFK----VGLHS---DKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 93 ~~~~p~~~t~~~li~~~~~~~~----~~~a~~i~~~~~~----~~~~~---~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
.|...|...|..|+.++....+ .+++.++.+.+.+ .|+.+ +...-+.+.+-|+..|+.+-....
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a 285 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAA 285 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4677788899999999887544 5677777766654 35432 222335788899999976654433
No 479
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=21.83 E-value=2.4e+02 Score=18.31 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=61.7
Q ss_pred chhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----------CChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 21 QLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----------PPLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
.+|..++..--.|+..++...|.... --.++.+-++.+.-. -+...|.++|.++.++--+.-.-.++.
T Consensus 4 ~~f~~lr~~a~~~~~e~f~~ai~e~lV~EmYE~igKlRN~~~~G~~~~lp~~A~~~A~~~AmliGL~Nr~~ytT~a~~l~ 83 (143)
T PF07827_consen 4 GFFEKLREAAESPESEEFRQAIREFLVGEMYEFIGKLRNARQSGPHTYLPYLAMQLAWYGAMLIGLHNRTLYTTSARVLP 83 (143)
T ss_dssp SHHHHHHHHHH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHCT---SSCCCHHH
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHHHHHHHHhccceeeccccccH
Confidence 34556655555666666666665444 333333333333221 245568899999999877777777777
Q ss_pred HHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcC
Q 045917 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g 148 (162)
|-.+..=.|+ -|..+++- ...|++.++.++++... ..|+.+..=+.+.|
T Consensus 84 Eal~Lp~rP~--Gyd~l~~l-vm~G~L~d~~~i~~~cE--------~~W~Gl~~Wa~~hg 132 (143)
T PF07827_consen 84 EALSLPSRPS--GYDELAQL-VMSGQLTDPEKIYESCE--------ALWTGLVKWAAEHG 132 (143)
T ss_dssp HHTTSSS--T--THHHHHHH-HHHTB---HHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHhcCCCCCc--cHHHHHHH-HhccccCCHHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 7766533343 35555554 57788888888876643 34555555444444
No 480
>PRK00847 thyX FAD-dependent thymidylate synthase; Reviewed
Probab=21.63 E-value=2.7e+02 Score=19.24 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHcCCC
Q 045917 80 SIESIKLFDEMLKTGLR 96 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~ 96 (162)
.+.+.+.|+++.+.|+.
T Consensus 130 ~~~~~~~Y~~l~~~g~~ 146 (217)
T PRK00847 130 AEAAYEAYEELLEKGIA 146 (217)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 47788889999887764
No 481
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=21.26 E-value=5.1e+02 Score=21.97 Aligned_cols=89 Identities=10% Similarity=0.009 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHH-----------HHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLF-----------DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~-----------~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
|....|+..|...+..|++.+++..+ +++.+ ...|+. -|...|+.|...+-.+.+..+...+.+..-
T Consensus 644 p~~~aYt~~l~~~a~~g~~~~~laAllPC~w~Y~~ig~~l~~-~~~~~~-~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~ 721 (755)
T PRK09517 644 PVTMAYTDFLIARTYTEDYVVGVAAVLPCYWLYAEIGLMLAE-QNHDEH-PYKDWLNTYSGEEFIAGTRAAIARVEKALE 721 (755)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCc-hHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 77888999999888889888775433 22222 223444 399999999854333334444444444444
Q ss_pred CcchhHHHHHHHHHHhcCChhH
Q 045917 131 HSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 131 ~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
..+......+.+.|.+.-++|-
T Consensus 722 ~~s~~~~~~l~~~F~~a~~lE~ 743 (755)
T PRK09517 722 NAGPEQRVDAARAFLSASVHER 743 (755)
T ss_pred hCCHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777776655553
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.14 E-value=5.5e+02 Score=22.24 Aligned_cols=81 Identities=10% Similarity=0.129 Sum_probs=54.8
Q ss_pred chhHHHHHhcCCCc---hhHHHHHHHhhC-CCChHHHHHHhhhhC--CCh----------hHHHHHHHHHHcCCCchHHH
Q 045917 21 QLPALFLKTSLDHN---TYIISRFILTSL-PISLHFTRSLFNNVM--PPL----------FAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 21 ~~~~~~~~~~~~~~---~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~----------~~~~~li~~~~~~~~~~~a~ 84 (162)
..++.|+++=-.|+ +.+...++-.|- ..+++...++.+..+ ||+ +.|.-.++--.+.|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 45566665544454 445555666666 888999999999887 642 23555666666678999999
Q ss_pred HHHHHHHHc--CCCCCCcc
Q 045917 85 KLFDEMLKT--GLRPDNLT 101 (162)
Q Consensus 85 ~~~~~m~~~--~~~p~~~t 101 (162)
...-.|++. .+.||.+.
T Consensus 264 ~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHHHhcCCCCCceee
Confidence 888888664 46676544
No 483
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=99 Score=22.92 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=19.6
Q ss_pred HHHHHHHHHHc-----CCCchHHHHHHHHHHHcC
Q 045917 66 AYNTLIRAYAK-----TSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 66 ~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~ 94 (162)
....+|..+.+ .+++.+|.+++++|.+..
T Consensus 21 ~~~eli~~~~~~~gF~a~~l~eA~~I~~~m~~~~ 54 (318)
T COG1899 21 SVSELIDEMYKTGGFQARRLAEAVEILREMLESR 54 (318)
T ss_pred cHHHHHHHHHhhccccchhHHHHHHHHHHHHhhc
Confidence 45556664444 357888888888887764
No 484
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=21.02 E-value=2.6e+02 Score=19.04 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=29.6
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHc
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAK 76 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~ 76 (162)
+.+.....++..|. .|+.+..+++.-.+.+...-.+.++..|-+
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~ 64 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKK 64 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHH
Confidence 56678889999999 999888888887776332223333444433
No 485
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=20.78 E-value=3.8e+02 Score=23.63 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=40.8
Q ss_pred hhccchhhhHHHHHHHHHhcCcc-hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 111 QCLLIGVGGSVHSLIFKVGLHSD-KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 111 ~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
....+.+++.+|..|...|+.+. ...|...-..|.+.+.+.+|..+|..
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~ 139 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQL 139 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999998655 56677788889999999999999863
No 486
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=20.66 E-value=1.6e+02 Score=15.99 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=21.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
+..+..++.+-....+.+.+...|...+..+....+++.-+.|
T Consensus 4 L~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 4 LRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4444455555555555555555555555555544444444333
No 487
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.46 E-value=4.5e+02 Score=21.04 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhC-----------------CChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 26 FLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVM-----------------PPLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
+.+.|+..+......+.... .|++..+...++... +.....-.++.+. ..++..+|+.+++
T Consensus 188 ~~~egi~i~~~Al~~ia~~s-~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~ 265 (504)
T PRK14963 188 LEAEGREAEPEALQLVARLA-DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAA 265 (504)
T ss_pred HHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 34567777665554444322 577777766665532 2333344455555 4589999999999
Q ss_pred HHHHcCCCCC
Q 045917 89 EMLKTGLRPD 98 (162)
Q Consensus 89 ~m~~~~~~p~ 98 (162)
++...|..|.
T Consensus 266 ~Ll~~G~~~~ 275 (504)
T PRK14963 266 QLYRDGFAAR 275 (504)
T ss_pred HHHHcCCCHH
Confidence 9999987664
No 488
>PF07149 Pes-10: Pes-10; InterPro: IPR009819 This family consists of several Caenorhabditis elegans pes-10 and related proteins. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=20.28 E-value=4e+02 Score=20.39 Aligned_cols=131 Identities=11% Similarity=-0.003 Sum_probs=71.7
Q ss_pred hcCCCchhHHHHHHHhhCCCC---hHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHH-----------
Q 045917 29 TSLDHNTYIISRFILTSLPIS---LHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEML----------- 91 (162)
Q Consensus 29 ~~~~~~~~~~~~ll~~~~~~~---~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----------- 91 (162)
.+..|.....+.++......+ ...|.+++.... -+...++++=.+-.-.+++.+|-.+..+..
T Consensus 91 e~~~~ee~vv~Ll~~l~~~~d~~~vrlaf~lL~dl~~~le~ye~l~i~~~A~~~~~q~~EA~~Li~kv~~~l~~E~~~e~ 170 (370)
T PF07149_consen 91 EMRFPEEFVVNLLTNLMQFEDLDYVRLAFRLLNDLDFNLEDYEELGIYDRAMQFQDQFVEADELIDKVEMILQDEILDED 170 (370)
T ss_pred hccCchHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccch
Confidence 344555555444444333444 344666666665 233345555556666788888888887763
Q ss_pred -------------------HcCCCCC------------CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhH---H
Q 045917 92 -------------------KTGLRPD------------NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI---G 137 (162)
Q Consensus 92 -------------------~~~~~p~------------~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~---~ 137 (162)
.+|+-.. ...+...+-.|.+.|+-...-..........++++..- .
T Consensus 171 d~Ee~e~~e~d~~~~~~e~esg~~~~~ee~~~~~~~~~~EI~M~~La~~iksgn~~~I~~AI~~~~~~~~pL~lyrKYeI 250 (370)
T PF07149_consen 171 DQEEEEDEEIDDAEENSETESGIFTEEEEEEFRFDAAIMEICMRNLAQSIKSGNEEKISAAIKFFGEFEFPLELYRKYEI 250 (370)
T ss_pred hhhhcccccccchhhcCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 1111000 11233345677778887766666666666655554221 2
Q ss_pred HHHHHHHHhcCChhHHHHhhcccC
Q 045917 138 NTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 138 ~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
..|+..|+.. -+.|..++++++
T Consensus 251 ~~LI~~~~~~--~~~A~~L~~~I~ 272 (370)
T PF07149_consen 251 QRLIEKHGIH--NEDAMDLIDKIE 272 (370)
T ss_pred HHHHHHhccc--hhHHHHHHHHHH
Confidence 3455555444 667777777653
Done!