Query 045917
Match_columns 162
No_of_seqs 132 out of 1140
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 11:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.2E-36 1.8E-40 226.6 13.2 157 5-161 31-202 (501)
2 4g26_A Pentatricopeptide repea 100.0 4E-30 1.4E-34 194.5 11.0 145 4-148 62-224 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 8.8E-26 3E-30 178.5 7.1 127 34-160 126-262 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 1.7E-22 5.9E-27 160.0 4.2 141 3-148 130-286 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 4.8E-15 1.6E-19 113.3 14.0 151 7-159 414-575 (597)
6 2xpi_A Anaphase-promoting comp 99.6 4.9E-15 1.7E-19 113.2 13.4 152 6-160 345-501 (597)
7 3mkr_A Coatomer subunit epsilo 99.3 2.9E-10 1E-14 80.4 15.5 150 5-159 70-225 (291)
8 2ho1_A Type 4 fimbrial biogene 99.2 7.3E-10 2.5E-14 75.7 14.8 151 8-160 45-201 (252)
9 2vq2_A PILW, putative fimbrial 99.2 1.3E-09 4.3E-14 72.9 15.5 153 6-160 14-173 (225)
10 1w3b_A UDP-N-acetylglucosamine 99.2 2.7E-10 9.3E-15 82.8 12.2 123 35-159 237-364 (388)
11 1w3b_A UDP-N-acetylglucosamine 99.2 1E-09 3.6E-14 79.7 14.9 123 37-161 205-332 (388)
12 2y4t_A DNAJ homolog subfamily 99.2 1E-09 3.5E-14 81.0 14.3 85 74-160 153-237 (450)
13 2y4t_A DNAJ homolog subfamily 99.2 1E-09 3.5E-14 81.0 13.9 149 7-159 184-354 (450)
14 2q7f_A YRRB protein; TPR, prot 99.1 6.1E-09 2.1E-13 70.5 15.2 149 8-159 65-218 (243)
15 3as5_A MAMA; tetratricopeptide 99.1 2.9E-09 1E-13 68.9 12.5 151 7-160 15-170 (186)
16 2ho1_A Type 4 fimbrial biogene 99.1 7.1E-09 2.4E-13 70.8 14.2 152 6-160 77-235 (252)
17 3hym_B Cell division cycle pro 99.1 9.6E-09 3.3E-13 72.5 15.2 153 6-160 131-296 (330)
18 3cv0_A Peroxisome targeting si 99.1 5.5E-09 1.9E-13 73.6 13.9 149 10-160 148-312 (327)
19 3mkr_A Coatomer subunit epsilo 99.1 3.5E-09 1.2E-13 74.8 12.8 145 7-159 108-260 (291)
20 1b89_A Protein (clathrin heavy 99.1 1.3E-11 4.4E-16 91.4 0.2 141 4-160 7-148 (449)
21 2q7f_A YRRB protein; TPR, prot 99.1 5.1E-09 1.7E-13 70.9 13.1 149 9-160 32-185 (243)
22 3uq3_A Heat shock protein STI1 99.1 3E-09 1E-13 72.6 11.9 149 8-159 13-198 (258)
23 3vtx_A MAMA; tetratricopeptide 99.1 1.9E-08 6.4E-13 65.7 15.2 152 5-159 10-166 (184)
24 2pl2_A Hypothetical conserved 99.1 2.1E-09 7.1E-14 72.6 10.8 144 12-159 51-210 (217)
25 1fch_A Peroxisomal targeting s 99.1 6.9E-09 2.4E-13 74.5 14.1 147 12-159 193-355 (368)
26 2fo7_A Synthetic consensus TPR 99.0 3.4E-09 1.2E-13 64.9 10.5 121 38-160 4-129 (136)
27 1b89_A Protein (clathrin heavy 99.0 5.9E-10 2E-14 82.6 7.8 128 9-158 103-231 (449)
28 4eqf_A PEX5-related protein; a 99.0 2.4E-09 8.1E-14 77.2 10.6 148 10-159 75-272 (365)
29 4eqf_A PEX5-related protein; a 99.0 6.7E-09 2.3E-13 74.8 12.6 152 7-159 184-352 (365)
30 2vq2_A PILW, putative fimbrial 99.0 3E-08 1E-12 66.1 14.4 153 6-160 48-208 (225)
31 2pl2_A Hypothetical conserved 99.0 1.9E-08 6.5E-13 67.8 12.7 149 6-159 11-176 (217)
32 1fch_A Peroxisomal targeting s 99.0 2.1E-08 7.1E-13 72.0 13.6 151 7-159 71-276 (368)
33 3hym_B Cell division cycle pro 99.0 2.8E-08 9.6E-13 70.0 14.1 143 15-159 106-261 (330)
34 2gw1_A Mitochondrial precursor 98.9 2.2E-08 7.6E-13 74.8 13.3 150 7-160 244-398 (514)
35 3fp2_A TPR repeat-containing p 98.9 1.1E-07 3.7E-12 71.6 16.1 148 9-160 252-404 (537)
36 3cv0_A Peroxisome targeting si 98.9 7.1E-08 2.4E-12 67.9 14.2 148 8-159 29-197 (327)
37 2gw1_A Mitochondrial precursor 98.9 8.7E-08 3E-12 71.6 14.7 151 7-159 311-474 (514)
38 3uq3_A Heat shock protein STI1 98.9 9E-08 3.1E-12 65.1 13.5 152 6-159 44-232 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 98.8 9.5E-08 3.2E-12 65.7 12.6 142 14-158 19-168 (275)
40 3nf1_A KLC 1, kinesin light ch 98.8 5.1E-08 1.7E-12 68.1 10.7 155 6-160 33-221 (311)
41 2ond_A Cleavage stimulation fa 98.8 1.2E-07 4.1E-12 67.2 12.6 141 17-159 81-228 (308)
42 4gyw_A UDP-N-acetylglucosamine 98.8 2E-07 6.8E-12 73.6 14.6 151 5-159 14-170 (723)
43 3edt_B KLC 2, kinesin light ch 98.8 4E-08 1.4E-12 67.6 9.5 155 6-160 49-278 (283)
44 2ond_A Cleavage stimulation fa 98.8 1.2E-07 4.1E-12 67.2 12.1 153 5-160 104-267 (308)
45 3nf1_A KLC 1, kinesin light ch 98.8 5.3E-08 1.8E-12 68.0 10.0 154 6-159 75-303 (311)
46 3as5_A MAMA; tetratricopeptide 98.8 2.1E-07 7.3E-12 59.9 12.0 123 36-160 9-136 (186)
47 1xnf_A Lipoprotein NLPI; TPR, 98.8 3.7E-07 1.3E-11 62.8 13.8 151 7-160 50-241 (275)
48 3ieg_A DNAJ homolog subfamily 98.8 2.3E-07 7.8E-12 65.9 13.1 80 11-91 14-98 (359)
49 2fo7_A Synthetic consensus TPR 98.8 2.8E-07 9.7E-12 56.1 11.9 122 5-128 6-132 (136)
50 3ieg_A DNAJ homolog subfamily 98.8 2.2E-07 7.5E-12 66.0 12.7 152 6-160 43-214 (359)
51 4abn_A Tetratricopeptide repea 98.7 1.7E-07 5.7E-12 70.5 11.1 145 13-159 115-283 (474)
52 3fp2_A TPR repeat-containing p 98.7 8.5E-07 2.9E-11 66.7 15.1 152 6-159 316-487 (537)
53 3u4t_A TPR repeat-containing p 98.7 7.6E-07 2.6E-11 61.2 12.5 150 7-160 10-168 (272)
54 4abn_A Tetratricopeptide repea 98.7 2.1E-07 7.3E-12 69.9 10.3 153 6-161 143-319 (474)
55 3edt_B KLC 2, kinesin light ch 98.6 8.4E-08 2.9E-12 66.0 6.9 147 14-160 15-195 (283)
56 3vtx_A MAMA; tetratricopeptide 98.6 1.3E-06 4.4E-11 56.8 11.7 126 33-160 3-133 (184)
57 2ooe_A Cleavage stimulation fa 98.6 1E-06 3.6E-11 66.8 12.0 139 18-159 304-450 (530)
58 4i17_A Hypothetical protein; T 98.6 1E-06 3.5E-11 59.3 10.7 138 9-150 16-169 (228)
59 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.5E-06 8.7E-11 56.6 12.3 119 41-160 12-147 (213)
60 3qou_A Protein YBBN; thioredox 98.5 4E-06 1.4E-10 58.9 13.7 150 8-159 125-280 (287)
61 3u4t_A TPR repeat-containing p 98.5 1.3E-05 4.4E-10 54.9 15.8 151 7-160 81-247 (272)
62 2vsy_A XCC0866; transferase, g 98.5 1.4E-06 4.7E-11 66.7 11.7 143 14-159 3-153 (568)
63 3mv2_B Coatomer subunit epsilo 98.5 9.2E-07 3.1E-11 62.9 9.8 116 9-126 109-238 (310)
64 3mv2_B Coatomer subunit epsilo 98.4 3E-06 1E-10 60.2 11.0 136 19-159 85-236 (310)
65 4gyw_A UDP-N-acetylglucosamine 98.4 2.7E-06 9.3E-11 67.2 11.8 123 34-159 8-136 (723)
66 1ouv_A Conserved hypothetical 98.4 1.6E-05 5.4E-10 54.9 14.5 106 47-158 55-174 (273)
67 1qqe_A Vesicular transport pro 98.4 3.1E-06 1E-10 59.5 10.8 153 8-160 45-225 (292)
68 2r5s_A Uncharacterized protein 98.4 2.9E-06 9.9E-11 55.0 9.9 149 7-159 13-169 (176)
69 1na0_A Designed protein CTPR3; 98.4 6.2E-06 2.1E-10 49.4 10.9 110 35-146 9-123 (125)
70 2h6f_A Protein farnesyltransfe 98.4 1E-05 3.5E-10 59.3 13.8 146 6-154 103-255 (382)
71 2pzi_A Probable serine/threoni 98.4 4.7E-06 1.6E-10 65.4 12.4 146 13-161 404-561 (681)
72 1na0_A Designed protein CTPR3; 98.4 3.8E-06 1.3E-10 50.4 9.4 95 64-160 9-103 (125)
73 2ooe_A Cleavage stimulation fa 98.4 4.4E-06 1.5E-10 63.3 11.3 153 5-160 326-489 (530)
74 3gw4_A Uncharacterized protein 98.4 2.2E-06 7.6E-11 56.2 8.3 146 13-159 5-172 (203)
75 1ouv_A Conserved hypothetical 98.4 2.8E-05 9.6E-10 53.6 14.2 138 13-159 55-211 (273)
76 4i17_A Hypothetical protein; T 98.4 1.4E-05 4.7E-10 53.7 12.2 125 33-160 5-143 (228)
77 1a17_A Serine/threonine protei 98.3 9.8E-06 3.3E-10 51.3 10.8 121 37-159 15-142 (166)
78 3qky_A Outer membrane assembly 98.3 2.5E-05 8.6E-10 53.6 12.9 150 9-160 24-221 (261)
79 2vyi_A SGTA protein; chaperone 98.3 1.6E-05 5.4E-10 47.9 10.7 115 34-150 11-130 (131)
80 2lni_A Stress-induced-phosphop 98.3 1.8E-05 6.2E-10 48.0 11.0 114 33-148 14-132 (133)
81 2yhc_A BAMD, UPF0169 lipoprote 98.3 6.5E-05 2.2E-09 50.6 14.1 151 8-160 12-210 (225)
82 3ulq_A Response regulator aspa 98.3 1.6E-05 5.5E-10 57.6 11.6 149 11-159 114-289 (383)
83 1hh8_A P67PHOX, NCF-2, neutrop 98.2 4.4E-05 1.5E-09 50.4 12.6 117 9-130 15-152 (213)
84 3ro2_A PINS homolog, G-protein 98.2 1.2E-05 4E-10 56.3 9.7 151 9-159 14-208 (338)
85 3sf4_A G-protein-signaling mod 98.2 5.4E-06 1.9E-10 59.9 8.1 144 16-159 163-332 (406)
86 2h6f_A Protein farnesyltransfe 98.2 1.8E-05 6E-10 58.0 10.8 124 35-160 97-226 (382)
87 4a1s_A PINS, partner of inscut 98.2 5.2E-06 1.8E-10 60.4 7.7 150 9-159 57-248 (411)
88 3ro2_A PINS homolog, G-protein 98.2 4.9E-06 1.7E-10 58.2 7.2 145 16-160 159-329 (338)
89 1qqe_A Vesicular transport pro 98.2 5.5E-05 1.9E-09 53.0 12.5 152 8-161 85-267 (292)
90 2e2e_A Formate-dependent nitri 98.2 8.8E-06 3E-10 52.5 7.6 115 13-129 23-145 (177)
91 1p5q_A FKBP52, FK506-binding p 98.2 1.5E-05 5.3E-10 57.2 9.3 124 35-160 147-291 (336)
92 4a1s_A PINS, partner of inscut 98.1 1.2E-05 4E-10 58.6 8.5 144 16-159 199-368 (411)
93 3gyz_A Chaperone protein IPGC; 98.1 5.6E-05 1.9E-09 48.1 10.7 92 37-129 38-134 (151)
94 3u3w_A Transcriptional activat 98.1 6.2E-05 2.1E-09 52.7 11.9 118 42-159 82-221 (293)
95 2vgx_A Chaperone SYCD; alterna 98.1 9.8E-06 3.3E-10 51.3 7.1 110 17-129 4-119 (148)
96 2lni_A Stress-induced-phosphop 98.1 3.9E-05 1.3E-09 46.5 9.6 96 62-159 14-109 (133)
97 3gyz_A Chaperone protein IPGC; 98.1 3.1E-05 1E-09 49.3 9.2 95 63-159 35-129 (151)
98 3u3w_A Transcriptional activat 98.1 5.6E-05 1.9E-09 52.9 11.1 150 10-159 85-262 (293)
99 1elw_A TPR1-domain of HOP; HOP 98.1 4.8E-05 1.7E-09 44.9 9.3 91 37-128 6-101 (118)
100 4ga2_A E3 SUMO-protein ligase 98.1 1.7E-05 5.8E-10 50.2 7.5 131 14-149 11-149 (150)
101 2ifu_A Gamma-SNAP; membrane fu 98.1 2E-05 6.7E-10 55.7 8.6 151 8-159 44-220 (307)
102 4e6h_A MRNA 3'-END-processing 98.1 5.8E-05 2E-09 59.3 11.7 150 7-159 350-529 (679)
103 3qky_A Outer membrane assembly 98.1 0.00012 4E-09 50.2 12.0 125 35-160 15-174 (261)
104 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00012 4E-09 51.3 12.2 148 11-158 86-261 (293)
105 2vyi_A SGTA protein; chaperone 98.0 5.7E-05 2E-09 45.4 9.2 95 63-159 11-105 (131)
106 1hz4_A MALT regulatory protein 98.0 0.0002 6.9E-09 51.5 13.5 150 10-159 24-199 (373)
107 3q49_B STIP1 homology and U bo 98.0 7.9E-05 2.7E-09 45.6 9.9 96 33-129 7-107 (137)
108 2e2e_A Formate-dependent nitri 98.0 0.00013 4.5E-09 46.9 11.2 111 47-159 23-140 (177)
109 3ulq_A Response regulator aspa 98.0 6.3E-05 2.1E-09 54.5 10.5 120 8-127 151-292 (383)
110 3sf4_A G-protein-signaling mod 98.0 3.7E-05 1.3E-09 55.5 9.2 151 9-159 18-212 (406)
111 2dba_A Smooth muscle cell asso 98.0 0.0001 3.5E-09 45.5 10.1 95 34-129 27-129 (148)
112 3urz_A Uncharacterized protein 98.0 6E-05 2.1E-09 50.1 9.5 144 11-159 15-182 (208)
113 1elr_A TPR2A-domain of HOP; HO 98.0 5.8E-05 2E-09 45.4 8.7 93 66-159 6-104 (131)
114 3qou_A Protein YBBN; thioredox 98.0 5.8E-05 2E-09 52.9 9.7 126 32-160 114-245 (287)
115 2kck_A TPR repeat; tetratricop 98.0 3.8E-05 1.3E-09 45.0 7.6 92 66-159 8-102 (112)
116 3upv_A Heat shock protein STI1 98.0 8.4E-05 2.9E-09 45.0 9.2 91 37-128 6-101 (126)
117 2vgx_A Chaperone SYCD; alterna 98.0 6E-05 2E-09 47.6 8.7 94 64-159 21-114 (148)
118 4gco_A Protein STI-1; structur 98.0 0.00011 3.9E-09 45.0 9.7 91 37-128 15-110 (126)
119 2vsy_A XCC0866; transferase, g 98.0 4.5E-05 1.6E-09 58.3 9.4 110 48-159 3-116 (568)
120 2xcb_A PCRH, regulatory protei 98.0 8.6E-05 2.9E-09 46.2 9.2 91 38-129 21-116 (142)
121 3sz7_A HSC70 cochaperone (SGT) 98.0 7.8E-05 2.7E-09 47.5 9.2 95 34-129 10-109 (164)
122 3q15_A PSP28, response regulat 98.0 3.7E-05 1.3E-09 55.7 8.4 148 12-159 113-286 (378)
123 4ga2_A E3 SUMO-protein ligase 97.9 0.00011 3.8E-09 46.4 9.4 108 47-157 10-122 (150)
124 3ro3_A PINS homolog, G-protein 97.9 6.4E-05 2.2E-09 46.8 8.0 123 37-159 11-154 (164)
125 2fbn_A 70 kDa peptidylprolyl i 97.9 3.4E-05 1.2E-09 50.7 6.9 142 10-154 14-176 (198)
126 1xi4_A Clathrin heavy chain; a 97.9 0.00013 4.3E-09 61.3 11.3 144 7-159 1083-1246(1630)
127 2fbn_A 70 kDa peptidylprolyl i 97.9 3.6E-05 1.2E-09 50.6 6.6 116 43-159 12-147 (198)
128 2ifu_A Gamma-SNAP; membrane fu 97.9 0.00014 4.7E-09 51.3 9.9 146 13-159 4-180 (307)
129 3q49_B STIP1 homology and U bo 97.9 0.00014 4.8E-09 44.5 8.9 95 63-159 8-102 (137)
130 1elr_A TPR2A-domain of HOP; HO 97.9 7.7E-05 2.6E-09 44.9 7.5 108 36-145 5-123 (131)
131 1wao_1 Serine/threonine protei 97.8 8.1E-05 2.8E-09 56.0 8.4 110 47-158 19-134 (477)
132 2dba_A Smooth muscle cell asso 97.8 0.00047 1.6E-08 42.4 10.7 95 62-159 26-124 (148)
133 3gw4_A Uncharacterized protein 97.8 7.1E-05 2.4E-09 48.9 7.0 113 47-159 5-132 (203)
134 2r5s_A Uncharacterized protein 97.8 0.00028 9.4E-09 45.5 9.8 116 41-160 12-134 (176)
135 1hz4_A MALT regulatory protein 97.8 0.001 3.5E-08 47.7 13.7 153 8-160 61-241 (373)
136 2kck_A TPR repeat; tetratricop 97.8 0.00012 4E-09 42.8 7.4 95 35-129 6-107 (112)
137 1elw_A TPR1-domain of HOP; HOP 97.8 0.00034 1.2E-08 41.1 9.4 93 65-159 5-97 (118)
138 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00039 1.3E-08 44.1 10.0 84 8-92 19-107 (164)
139 1a17_A Serine/threonine protei 97.8 0.00037 1.3E-08 43.8 9.6 95 64-160 13-107 (166)
140 3upv_A Heat shock protein STI1 97.8 0.00068 2.3E-08 40.9 10.4 92 66-159 6-97 (126)
141 3rjv_A Putative SEL1 repeat pr 97.7 0.002 7E-08 42.8 13.4 147 8-159 26-193 (212)
142 3k9i_A BH0479 protein; putativ 97.7 2.2E-05 7.5E-10 47.3 3.1 98 47-145 3-108 (117)
143 1hxi_A PEX5, peroxisome target 97.7 0.00023 8E-09 43.2 7.8 85 72-159 25-110 (121)
144 2xev_A YBGF; tetratricopeptide 97.7 0.00073 2.5E-08 40.7 9.9 83 44-128 11-105 (129)
145 3q15_A PSP28, response regulat 97.7 0.00075 2.6E-08 48.8 11.5 150 7-159 189-361 (378)
146 2c2l_A CHIP, carboxy terminus 97.7 0.00037 1.3E-08 48.6 9.5 86 6-92 10-100 (281)
147 1p5q_A FKBP52, FK506-binding p 97.7 0.00096 3.3E-08 47.8 11.7 118 7-126 154-292 (336)
148 4gco_A Protein STI-1; structur 97.7 0.0009 3.1E-08 40.8 10.1 92 66-159 15-106 (126)
149 2pzi_A Probable serine/threoni 97.7 0.00011 3.9E-09 57.6 7.3 150 7-160 440-602 (681)
150 3rjv_A Putative SEL1 repeat pr 97.7 0.00069 2.3E-08 45.2 10.1 136 17-159 3-154 (212)
151 2xcb_A PCRH, regulatory protei 97.7 0.0006 2.1E-08 42.3 9.3 92 66-159 20-111 (142)
152 2qfc_A PLCR protein; TPR, HTH, 97.7 0.00099 3.4E-08 46.5 11.3 121 39-159 79-221 (293)
153 1xi4_A Clathrin heavy chain; a 97.7 0.0018 6.3E-08 54.6 14.1 135 6-156 1055-1189(1630)
154 2l6j_A TPR repeat-containing p 97.6 9.8E-05 3.4E-09 43.4 5.1 95 64-161 4-105 (111)
155 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00053 1.8E-08 51.3 9.3 118 36-155 269-406 (457)
156 2xm6_A Protein corresponding t 97.6 0.003 1E-07 47.3 13.3 137 14-159 273-428 (490)
157 4e6h_A MRNA 3'-END-processing 97.6 0.00062 2.1E-08 53.5 9.9 156 5-161 383-568 (679)
158 4gcn_A Protein STI-1; structur 97.6 0.0009 3.1E-08 40.8 8.8 88 69-158 13-107 (127)
159 4f3v_A ESX-1 secretion system 97.5 0.00029 1E-08 49.4 7.1 116 44-160 111-234 (282)
160 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.0013 4.5E-08 44.0 10.1 116 41-160 10-173 (225)
161 2xm6_A Protein corresponding t 97.5 0.0071 2.4E-07 45.2 14.2 77 48-127 129-215 (490)
162 3urz_A Uncharacterized protein 97.4 0.0016 5.3E-08 43.2 9.5 100 47-149 17-137 (208)
163 4b4t_Q 26S proteasome regulato 97.4 0.002 6.8E-08 47.1 10.8 150 10-159 14-200 (434)
164 2c2l_A CHIP, carboxy terminus 97.4 0.00095 3.2E-08 46.5 8.5 94 34-129 3-102 (281)
165 4gcn_A Protein STI-1; structur 97.4 0.0027 9.1E-08 38.7 9.5 100 38-139 11-121 (127)
166 3ro3_A PINS homolog, G-protein 97.4 0.00067 2.3E-08 42.0 6.9 123 6-128 15-158 (164)
167 2xev_A YBGF; tetratricopeptide 97.4 0.0049 1.7E-07 36.9 10.6 81 12-92 14-104 (129)
168 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00063 2.2E-08 48.8 7.3 122 37-160 181-325 (338)
169 4f3v_A ESX-1 secretion system 97.4 0.0017 6E-08 45.5 9.2 131 5-140 107-247 (282)
170 3k9i_A BH0479 protein; putativ 97.3 0.00032 1.1E-08 42.0 4.5 81 13-93 3-90 (117)
171 3rkv_A Putative peptidylprolyl 97.3 0.0042 1.4E-07 39.1 9.7 90 38-128 14-126 (162)
172 4g1t_A Interferon-induced prot 97.3 0.0047 1.6E-07 45.6 11.3 46 47-92 226-275 (472)
173 4b4t_Q 26S proteasome regulato 97.2 0.0065 2.2E-07 44.3 11.6 154 6-159 61-241 (434)
174 1wao_1 Serine/threonine protei 97.2 0.0021 7.3E-08 48.3 8.4 109 12-123 18-134 (477)
175 3n71_A Histone lysine methyltr 97.1 0.00034 1.2E-08 53.0 4.0 115 47-161 322-462 (490)
176 1ihg_A Cyclophilin 40; ppiase 97.1 0.0064 2.2E-07 44.2 10.2 116 38-156 226-363 (370)
177 3e4b_A ALGK; tetratricopeptide 97.0 0.026 9E-07 42.0 13.3 117 35-159 176-312 (452)
178 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0037 1.3E-07 44.8 8.2 94 64-160 179-290 (338)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.0051 1.7E-07 46.0 9.1 95 63-160 267-377 (457)
180 2kat_A Uncharacterized protein 97.0 0.0036 1.2E-07 37.0 6.8 96 52-148 3-103 (115)
181 1hxi_A PEX5, peroxisome target 97.0 0.0063 2.2E-07 36.6 8.0 86 41-128 23-114 (121)
182 1na3_A Designed protein CTPR2; 97.0 0.0091 3.1E-07 33.2 8.1 80 65-146 10-89 (91)
183 4g1t_A Interferon-induced prot 96.9 0.015 5E-07 42.9 11.1 144 14-159 227-397 (472)
184 3n71_A Histone lysine methyltr 96.9 0.0047 1.6E-07 46.7 8.2 119 10-128 319-464 (490)
185 2hr2_A Hypothetical protein; a 96.9 0.0097 3.3E-07 38.1 8.5 89 69-159 16-127 (159)
186 2kat_A Uncharacterized protein 96.8 0.0055 1.9E-07 36.2 6.8 74 18-92 3-81 (115)
187 2l6j_A TPR repeat-containing p 96.8 0.0059 2E-07 35.4 6.5 84 35-120 4-99 (111)
188 3ma5_A Tetratricopeptide repea 96.8 0.0039 1.3E-07 36.1 5.6 86 63-149 6-92 (100)
189 3ma5_A Tetratricopeptide repea 96.7 0.014 4.9E-07 33.7 7.8 59 34-92 6-69 (100)
190 1ihg_A Cyclophilin 40; ppiase 96.7 0.0042 1.4E-07 45.2 6.2 94 65-159 224-332 (370)
191 3qww_A SET and MYND domain-con 96.6 0.011 3.7E-07 44.1 8.0 84 76-159 310-407 (433)
192 3mkq_A Coatomer beta'-subunit; 96.5 0.034 1.2E-06 43.9 11.1 98 47-160 665-762 (814)
193 2uy1_A Cleavage stimulation fa 96.5 0.064 2.2E-06 40.5 12.1 147 6-160 219-380 (493)
194 3dra_A Protein farnesyltransfe 96.5 0.073 2.5E-06 37.7 11.6 145 14-160 124-284 (306)
195 3qwp_A SET and MYND domain-con 96.5 0.023 7.7E-07 42.3 9.1 89 71-159 294-396 (429)
196 3e4b_A ALGK; tetratricopeptide 96.4 0.06 2.1E-06 40.0 11.2 106 49-159 160-276 (452)
197 1klx_A Cysteine rich protein B 96.3 0.016 5.6E-07 35.7 6.7 109 14-130 9-128 (138)
198 3rkv_A Putative peptidylprolyl 96.2 0.077 2.6E-06 33.1 9.5 82 11-92 22-125 (162)
199 1klx_A Cysteine rich protein B 96.1 0.11 3.8E-06 31.9 9.8 105 47-159 8-122 (138)
200 1na3_A Designed protein CTPR2; 96.1 0.037 1.3E-06 30.6 6.9 59 35-93 9-72 (91)
201 3qww_A SET and MYND domain-con 95.4 0.025 8.7E-07 42.1 5.3 61 65-125 341-408 (433)
202 2hr2_A Hypothetical protein; a 95.4 0.16 5.4E-06 32.4 8.3 82 47-128 24-131 (159)
203 2kc7_A BFR218_protein; tetratr 95.3 0.054 1.8E-06 30.6 5.6 55 73-129 9-65 (99)
204 2kc7_A BFR218_protein; tetratr 94.7 0.11 3.6E-06 29.3 5.7 54 105-159 6-60 (99)
205 3qwp_A SET and MYND domain-con 94.7 0.058 2E-06 40.1 5.5 80 47-126 300-398 (429)
206 2uy1_A Cleavage stimulation fa 94.5 0.23 7.7E-06 37.6 8.3 107 13-126 299-411 (493)
207 1pc2_A Mitochondria fission pr 94.2 0.19 6.5E-06 31.8 6.4 66 62-128 30-100 (152)
208 3mkq_A Coatomer beta'-subunit; 93.8 1.2 4.1E-05 35.1 11.7 83 32-124 678-761 (814)
209 1wy6_A Hypothetical protein ST 93.6 0.54 1.8E-05 29.4 7.2 83 47-130 74-156 (172)
210 1v54_E Cytochrome C oxidase po 93.4 0.31 1.1E-05 28.6 5.6 43 85-127 31-73 (109)
211 1dce_A Protein (RAB geranylger 93.0 1.1 3.7E-05 34.6 9.9 128 16-146 45-190 (567)
212 2v5f_A Prolyl 4-hydroxylase su 92.7 0.45 1.6E-05 27.5 6.0 56 67-122 8-69 (104)
213 1wy6_A Hypothetical protein ST 92.6 1 3.5E-05 28.2 7.4 59 100-159 92-150 (172)
214 4gns_B Protein CSD3, chitin bi 92.5 3.4 0.00012 33.1 12.2 124 37-161 250-398 (754)
215 3u64_A Protein TP_0956; tetrat 92.4 2 7E-05 30.3 9.8 93 50-142 179-285 (301)
216 1zu2_A Mitochondrial import re 92.1 0.22 7.5E-06 31.7 4.2 88 12-102 14-127 (158)
217 3ly7_A Transcriptional activat 92.0 2.6 9E-05 30.7 12.1 129 29-159 188-335 (372)
218 3dra_A Protein farnesyltransfe 91.9 2.4 8.1E-05 29.9 13.9 33 116-149 203-235 (306)
219 2ff4_A Probable regulatory pro 91.6 0.52 1.8E-05 34.4 6.3 62 41-102 177-248 (388)
220 3bee_A Putative YFRE protein; 91.5 0.59 2E-05 26.6 5.4 65 63-129 5-73 (93)
221 3ly7_A Transcriptional activat 91.4 1.2 4E-05 32.5 7.8 66 62-129 275-340 (372)
222 1zu2_A Mitochondrial import re 91.2 1.2 4E-05 28.4 6.8 95 48-146 16-136 (158)
223 2y69_E Cytochrome C oxidase su 91.1 0.79 2.7E-05 28.4 5.6 59 83-142 72-130 (152)
224 3mkq_B Coatomer subunit alpha; 90.7 2.3 7.9E-05 27.5 10.5 97 10-122 15-112 (177)
225 4h7y_A Dual specificity protei 90.6 2.1 7.3E-05 27.1 9.1 95 62-158 11-118 (161)
226 3bee_A Putative YFRE protein; 90.6 1.4 4.9E-05 24.9 8.5 75 33-109 4-86 (93)
227 2uwj_G Type III export protein 90.5 1.6 5.6E-05 25.5 7.4 74 15-94 21-98 (115)
228 2p58_C Putative type III secre 90.3 1.7 5.8E-05 25.5 7.1 74 15-94 22-99 (116)
229 3q7a_A Farnesyltransferase alp 89.7 4.4 0.00015 29.2 13.2 147 9-158 63-232 (349)
230 1dce_A Protein (RAB geranylger 89.5 5.3 0.00018 30.7 10.5 134 16-152 89-244 (567)
231 1pc2_A Mitochondria fission pr 89.0 3 0.0001 26.3 7.6 18 75-92 82-99 (152)
232 3dss_A Geranylgeranyl transfer 87.9 5.8 0.0002 28.3 12.1 142 16-160 90-264 (331)
233 3mkq_B Coatomer subunit alpha; 87.3 4.4 0.00015 26.2 10.2 73 47-129 18-90 (177)
234 1nzn_A CGI-135 protein, fissio 87.2 0.97 3.3E-05 27.6 4.1 23 106-128 81-103 (126)
235 2v5f_A Prolyl 4-hydroxylase su 86.7 2.7 9.1E-05 24.1 5.8 66 33-100 3-80 (104)
236 2ff4_A Probable regulatory pro 86.6 1.7 5.9E-05 31.7 6.0 97 63-160 111-231 (388)
237 2nsz_A Programmed cell death p 85.3 4.5 0.00015 24.6 6.8 62 38-99 10-78 (129)
238 1v54_E Cytochrome C oxidase po 85.1 3 0.0001 24.5 5.2 47 62-109 43-89 (109)
239 3esl_A Checkpoint serine/threo 84.6 6.8 0.00023 25.9 7.5 85 51-136 61-152 (202)
240 2ion_A PDCD4, programmed cell 84.4 2.7 9.1E-05 26.5 5.3 90 38-127 12-112 (152)
241 3ffl_A Anaphase-promoting comp 83.8 6.6 0.00022 25.1 7.4 29 133-161 121-149 (167)
242 3u64_A Protein TP_0956; tetrat 82.7 4 0.00014 28.8 6.0 109 49-159 136-265 (301)
243 3q7a_A Farnesyltransferase alp 81.4 13 0.00044 26.8 11.4 137 11-150 99-258 (349)
244 4h7y_A Dual specificity protei 81.0 6.8 0.00023 24.8 6.0 58 78-136 74-131 (161)
245 4b4t_R RPN7, 26S proteasome re 80.4 7.8 0.00027 28.6 7.3 94 66-159 133-233 (429)
246 2d2s_A Exocyst complex compone 79.8 12 0.0004 25.4 7.6 84 71-157 25-114 (235)
247 2b7e_A PRE-mRNA processing pro 79.4 3.1 0.00011 21.6 3.5 35 80-114 2-37 (59)
248 2y69_E Cytochrome C oxidase su 78.6 6.4 0.00022 24.5 5.2 48 62-110 86-133 (152)
249 2wvi_A Mitotic checkpoint seri 77.6 11 0.00038 24.0 6.9 84 50-136 46-133 (164)
250 4b4t_P 26S proteasome regulato 75.4 23 0.00077 26.3 9.3 157 3-159 140-320 (445)
251 1nzn_A CGI-135 protein, fissio 75.1 6.8 0.00023 23.8 4.7 20 73-92 83-102 (126)
252 4aez_C MAD3, mitotic spindle c 75.0 16 0.00056 24.5 7.9 84 50-135 100-186 (223)
253 4a1g_A Mitotic checkpoint seri 73.9 14 0.00048 23.2 7.7 83 51-135 52-137 (152)
254 3dss_A Geranylgeranyl transfer 73.2 23 0.00077 25.3 10.9 96 50-147 90-192 (331)
255 3esl_A Checkpoint serine/threo 70.3 20 0.00067 23.7 6.4 46 113-158 93-139 (202)
256 2fu4_A Ferric uptake regulatio 70.0 11 0.00038 20.4 5.9 63 88-151 6-69 (83)
257 4gns_B Protein CSD3, chitin bi 69.6 31 0.0011 27.8 8.4 50 74-125 347-397 (754)
258 3lvg_A Clathrin heavy chain 1; 68.9 1.3 4.4E-05 34.0 0.6 81 66-154 56-136 (624)
259 3rjo_A Endoplasmic reticulum a 67.4 34 0.0012 25.1 11.8 103 3-110 200-312 (419)
260 3o48_A Mitochondria fission 1 66.6 14 0.0005 22.6 4.8 22 106-127 85-106 (134)
261 1mzb_A Ferric uptake regulatio 66.2 18 0.0006 21.9 5.3 37 114-150 33-69 (136)
262 2qq8_A TBC1 domain family memb 66.2 14 0.00049 26.2 5.6 76 86-161 215-293 (334)
263 3eiq_C Programmed cell death p 65.9 18 0.00061 26.2 6.0 65 37-101 219-290 (358)
264 2zu6_B Programmed cell death p 65.8 20 0.00068 25.3 6.1 64 38-101 169-239 (307)
265 1y8m_A FIS1; mitochondria, unk 65.7 19 0.00064 22.4 5.3 49 80-128 58-106 (144)
266 2w57_A Ferric uptake regulatio 65.7 21 0.00072 22.1 5.9 61 90-151 8-69 (150)
267 2fe3_A Peroxide operon regulat 65.4 18 0.00062 22.2 5.4 60 90-150 13-72 (145)
268 4a1g_A Mitotic checkpoint seri 62.8 15 0.00051 23.1 4.5 44 115-158 81-125 (152)
269 1ug3_A EIF4GI, eukaryotic prot 62.5 29 0.00099 24.7 6.6 58 38-95 14-77 (339)
270 4b4t_R RPN7, 26S proteasome re 62.5 44 0.0015 24.6 8.9 88 4-93 135-237 (429)
271 2xig_A Ferric uptake regulatio 62.3 25 0.00085 21.7 5.9 62 89-151 17-78 (150)
272 3l6a_A Eukaryotic translation 61.8 43 0.0015 24.3 7.7 60 38-97 15-81 (364)
273 1zbp_A Hypothetical protein VP 61.4 11 0.00037 26.2 4.0 107 11-128 8-129 (273)
274 3qye_A TBC1 domain family memb 61.3 30 0.001 24.4 6.5 75 85-159 209-287 (331)
275 3lpz_A GET4 (YOR164C homolog); 61.3 43 0.0015 24.1 10.0 111 37-157 37-159 (336)
276 1wdy_A 2-5A-dependent ribonucl 60.2 34 0.0012 22.6 6.6 128 22-159 20-170 (285)
277 4ets_A Ferric uptake regulatio 59.8 28 0.00097 21.9 5.6 70 81-151 14-86 (162)
278 1k1a_A B-cell lymphoma 3-encod 59.8 25 0.00085 22.8 5.6 50 8-58 14-67 (241)
279 3txn_A 26S proteasome regulato 59.7 49 0.0017 24.3 12.4 123 35-158 58-205 (394)
280 3aji_A 26S proteasome non-ATPa 59.7 25 0.00086 22.6 5.6 17 140-156 175-191 (231)
281 3kea_A K1L; tropism, ANK repea 59.6 24 0.00083 24.0 5.7 12 47-58 72-83 (285)
282 2wvi_A Mitotic checkpoint seri 59.3 22 0.00075 22.6 4.9 43 116-158 77-120 (164)
283 4ets_A Ferric uptake regulatio 59.1 26 0.00088 22.0 5.3 36 24-60 22-58 (162)
284 3twr_A Tankyrase-2; ankyrin re 58.8 28 0.00094 21.1 7.0 13 47-59 52-64 (165)
285 4aez_C MAD3, mitotic spindle c 57.8 21 0.00073 24.0 4.8 45 115-159 130-175 (223)
286 3eyy_A Putative iron uptake re 57.5 17 0.00058 22.3 4.2 35 115-149 33-67 (145)
287 1bd8_A P19INK4D CDK4/6 inhibit 57.3 28 0.00097 20.8 6.1 138 11-160 10-156 (156)
288 3mwm_A ZUR, putative metal upt 56.9 22 0.00074 21.7 4.5 47 69-115 18-64 (139)
289 3mwm_A ZUR, putative metal upt 56.7 13 0.00045 22.7 3.5 24 38-61 16-40 (139)
290 2o03_A Probable zinc uptake re 55.7 15 0.00053 22.0 3.7 45 70-114 16-60 (131)
291 1y1x_A Leishmania major homolo 55.6 23 0.00079 22.4 4.8 132 20-158 30-169 (191)
292 4fhn_B Nucleoporin NUP120; pro 55.6 93 0.0032 26.2 9.5 25 37-61 940-965 (1139)
293 2xig_A Ferric uptake regulatio 55.5 34 0.0012 21.1 5.6 35 25-60 17-52 (150)
294 2fe3_A Peroxide operon regulat 55.2 33 0.0011 20.9 5.7 37 24-61 11-48 (145)
295 3lvg_A Clathrin heavy chain 1; 55.1 3.7 0.00013 31.5 0.9 117 35-161 54-171 (624)
296 2nsz_A Programmed cell death p 55.1 15 0.00052 22.2 3.5 26 66-91 9-34 (129)
297 1zbp_A Hypothetical protein VP 55.1 28 0.00096 24.2 5.2 70 72-143 5-77 (273)
298 1wgl_A TOLL-interacting protei 54.5 21 0.00071 18.4 3.9 47 51-99 10-58 (59)
299 2o03_A Probable zinc uptake re 54.2 24 0.00082 21.2 4.4 47 105-151 16-62 (131)
300 2r9g_A AAA ATPase, central reg 52.4 48 0.0016 21.9 6.6 60 70-130 17-84 (204)
301 1mzb_A Ferric uptake regulatio 52.3 22 0.00077 21.5 4.0 34 26-60 9-44 (136)
302 2ko4_A Mediator of RNA polymer 51.3 28 0.00097 19.2 3.8 28 62-89 34-61 (81)
303 2i7a_A Calpain 13; calcium-dep 49.4 35 0.0012 21.4 4.8 24 135-158 131-154 (174)
304 3bge_A Predicted ATPase; struc 49.1 54 0.0018 21.6 5.5 45 70-114 10-57 (201)
305 3hra_A Ankyrin repeat family p 48.7 36 0.0012 21.3 4.8 107 47-158 82-199 (201)
306 1y8m_A FIS1; mitochondria, unk 48.5 17 0.00057 22.6 2.9 51 47-99 55-110 (144)
307 1fkm_A Protein (GYP1P), ORF YO 47.7 37 0.0013 24.8 5.2 45 85-129 217-261 (396)
308 2ion_A PDCD4, programmed cell 47.6 23 0.00078 22.1 3.6 26 66-91 11-36 (152)
309 3cqc_A Nuclear pore complex pr 46.8 15 0.0005 25.5 2.8 25 137-161 37-61 (270)
310 2qfz_A TBC1 domain family memb 46.4 22 0.00074 25.3 3.7 77 85-161 230-313 (345)
311 2yru_A Steroid receptor RNA ac 44.7 27 0.00093 20.9 3.4 44 85-128 47-90 (118)
312 2etb_A Transient receptor pote 43.8 66 0.0023 21.1 6.2 90 6-100 5-119 (256)
313 3eyy_A Putative iron uptake re 43.7 42 0.0014 20.5 4.4 12 24-35 8-19 (145)
314 3hzj_A Rabgap1L, RAB GTPase-ac 43.0 82 0.0028 21.9 6.6 74 85-158 175-251 (310)
315 4fhn_B Nucleoporin NUP120; pro 42.8 1.5E+02 0.0052 25.0 15.5 106 47-155 855-992 (1139)
316 1k1a_A B-cell lymphoma 3-encod 42.7 65 0.0022 20.7 6.1 103 47-159 19-138 (241)
317 3f6q_A Integrin-linked protein 42.3 58 0.002 20.0 5.8 13 47-59 49-61 (179)
318 4b4t_S RPN3, 26S proteasome re 41.3 1.2E+02 0.0041 23.3 7.8 70 24-93 216-299 (523)
319 1uzc_A Hypothetical protein FL 41.0 42 0.0014 18.0 4.2 38 79-116 13-50 (71)
320 2dod_A Transcription elongatio 40.8 46 0.0016 18.4 4.1 38 79-116 15-52 (82)
321 3ctd_A Putative ATPase, AAA fa 40.8 79 0.0027 21.1 6.2 62 69-130 37-106 (213)
322 2w57_A Ferric uptake regulatio 40.7 28 0.00094 21.5 3.2 37 24-61 6-44 (150)
323 1oai_A Nuclear RNA export fact 39.3 34 0.0012 17.6 2.8 23 76-98 32-55 (59)
324 2wpv_A GET4, UPF0363 protein Y 37.7 1.1E+02 0.0037 21.7 10.5 111 37-157 35-157 (312)
325 3ygs_P Procaspase 9; apoptosis 36.0 60 0.0021 18.3 4.6 64 19-84 23-88 (97)
326 2keb_A DNA polymerase subunit 36.0 64 0.0022 18.6 5.0 59 80-140 25-88 (101)
327 3utm_A Tankyrase-1; tankyrase, 35.9 1E+02 0.0035 21.0 7.2 110 39-158 26-145 (351)
328 3bu8_A Telomeric repeat-bindin 34.8 89 0.0031 21.0 4.9 20 140-159 120-139 (235)
329 3f3f_C Nucleoporin NUP85; stru 34.6 94 0.0032 24.1 5.7 52 101-154 518-569 (570)
330 3bqo_A Telomeric repeat-bindin 34.3 1E+02 0.0035 20.4 7.9 42 50-91 94-144 (211)
331 3no6_A Transcriptional activat 33.9 1.1E+02 0.0037 20.7 7.8 88 62-151 127-227 (248)
332 3ffl_A Anaphase-promoting comp 33.8 72 0.0025 20.4 4.2 67 93-159 12-88 (167)
333 4g8k_A 2-5A-dependent ribonucl 32.4 1.2E+02 0.0042 20.8 7.1 33 121-156 288-320 (337)
334 2etb_A Transient receptor pote 32.3 1E+02 0.0036 20.0 5.3 88 70-158 5-111 (256)
335 3t5v_B Nuclear mRNA export pro 32.2 1.3E+02 0.0044 22.6 6.0 82 77-158 139-244 (455)
336 3se6_A Endoplasmic reticulum a 31.4 2.3E+02 0.0078 23.6 11.4 106 3-110 751-863 (967)
337 3ibx_A TENA, HP1287, putative 31.4 1.1E+02 0.0038 20.0 6.5 90 62-151 111-211 (221)
338 2ijq_A Hypothetical protein; s 30.8 1E+02 0.0035 19.5 5.5 49 78-126 46-102 (161)
339 4b4t_P 26S proteasome regulato 30.4 1.7E+02 0.0056 21.7 10.4 144 14-159 30-202 (445)
340 3qwl_A TBC1 domain family memb 30.3 1.1E+02 0.0036 21.4 5.1 77 85-161 188-268 (294)
341 3us6_A Histidine-containing ph 30.0 1E+02 0.0035 19.1 8.5 36 39-74 11-49 (153)
342 3jxi_A Vanilloid receptor-rela 28.5 1E+02 0.0035 20.1 4.7 53 72-124 10-71 (260)
343 2d2s_A Exocyst complex compone 27.7 1.4E+02 0.0048 20.0 5.4 23 101-123 93-115 (235)
344 2rg8_A Programmed cell death p 27.6 39 0.0013 21.4 2.3 26 38-63 13-40 (165)
345 4b93_B Ankyrin repeat domain-c 27.6 1.4E+02 0.0046 20.1 5.2 68 86-158 134-206 (269)
346 1n00_A Annexin GH1; membrane-b 26.9 90 0.0031 22.1 4.3 98 17-124 20-132 (321)
347 3eiq_C Programmed cell death p 26.5 64 0.0022 23.4 3.5 26 66-91 219-244 (358)
348 4hl4_A TBC1 domain family memb 26.0 1.5E+02 0.0052 20.3 5.3 75 86-161 190-270 (292)
349 2y1l_E Darpin-8.4; hydrolase-i 26.0 1.1E+02 0.0039 18.4 6.7 125 22-157 29-166 (169)
350 3hgl_A Effector protein hopab2 25.9 89 0.0031 17.2 4.2 13 62-74 41-53 (85)
351 3kea_A K1L; tropism, ANK repea 25.6 1.6E+02 0.0053 19.8 7.1 129 21-158 76-216 (285)
352 4fn6_A Thiaminase-2, thiaminas 25.4 1.5E+02 0.0051 19.6 7.9 88 62-151 108-208 (229)
353 3l6a_A Eukaryotic translation 25.3 51 0.0017 23.8 2.8 26 66-91 14-39 (364)
354 2f8y_A Notch homolog 1, transl 25.2 1.3E+02 0.0045 18.9 6.1 37 22-59 40-80 (223)
355 3kae_A CDC27, possible protein 25.2 1.5E+02 0.0051 19.4 5.9 86 37-124 34-139 (242)
356 1wdy_A 2-5A-dependent ribonucl 24.6 1.5E+02 0.0051 19.3 5.4 110 40-159 7-127 (285)
357 1q2z_A ATP-dependent DNA helic 23.3 52 0.0018 19.6 2.2 44 50-96 43-95 (120)
358 3sjs_A URE3-BP sequence specif 23.2 1.6E+02 0.0053 19.0 5.4 30 47-76 83-115 (220)
359 1naf_A ADP-ribosylation factor 22.9 28 0.00096 22.0 0.9 25 22-46 21-45 (158)
360 1dp3_A TRAM protein; helix-loo 22.9 85 0.0029 15.9 2.5 34 80-113 12-45 (55)
361 4hbd_A KN motif and ankyrin re 22.9 1.8E+02 0.006 19.5 5.3 13 47-59 121-133 (276)
362 1rtw_A Transcriptional activat 22.3 1.7E+02 0.0058 19.1 6.4 88 62-151 100-198 (220)
363 1alv_A Calpain, S-camld; calci 21.7 1.4E+02 0.0049 18.0 8.3 101 52-158 48-152 (173)
364 3rm5_A Hydroxymethylpyrimidine 21.0 2.4E+02 0.0083 21.5 5.9 89 62-151 439-539 (550)
365 1ug3_A EIF4GI, eukaryotic prot 20.9 37 0.0013 24.2 1.3 26 66-91 13-38 (339)
366 1uhw_A Pleckstrin; three-helix 20.8 1.4E+02 0.0047 17.5 4.3 49 82-130 7-71 (109)
367 4fke_A Aminopeptidase N; zinc 20.8 3.6E+02 0.012 22.2 10.6 90 16-110 705-803 (909)
368 2qq8_A TBC1 domain family memb 20.6 65 0.0022 22.8 2.6 40 120-159 214-253 (334)
369 3hzj_A Rabgap1L, RAB GTPase-ac 20.5 75 0.0026 22.1 2.8 40 120-159 175-214 (310)
370 3v30_A DNA-binding protein rfx 20.4 1.5E+02 0.0051 17.7 4.5 102 47-158 12-123 (172)
371 2dzn_A Probable 26S proteasome 20.2 1.7E+02 0.0059 18.4 5.0 102 47-158 12-128 (228)
372 1ixm_A SPO0B, protein (sporula 20.1 97 0.0033 20.0 3.1 42 51-92 16-60 (192)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.2e-36 Score=226.60 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=149.0
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCC---------hHHHHHHhhhhC-----CChhHHHH
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PIS---------LHFTRSLFNNVM-----PPLFAYNT 69 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~---------~~~a~~~~~~m~-----~~~~~~~~ 69 (162)
..+..+.+.|++++|.++|+.|++.|+.||..+||+||.+|+ .+. ++.|.++|++|. ||..|||+
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 345556666899999999999999999999999999999998 654 688999999997 99999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~ 149 (162)
+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+|++||++|++.|+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcccC
Q 045917 150 IDFAKALFDEMP 161 (162)
Q Consensus 150 ~~~a~~~~~~m~ 161 (162)
+++|.++|++|+
T Consensus 191 ~d~A~~ll~~Mr 202 (501)
T 4g26_A 191 ADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999996
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4e-30 Score=194.52 Aligned_cols=145 Identities=7% Similarity=0.033 Sum_probs=135.6
Q ss_pred hHHHHHHHHhh------------chhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChh
Q 045917 4 RQIETLIQLSK------------TAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLF 65 (162)
Q Consensus 4 ~~~~~~l~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~ 65 (162)
.++..++..|+ +++.|.++|+.|...|+.||..+||+||++|+ .|++++|.++|++|. ||..
T Consensus 62 ~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 62 YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 35556666553 25678999999999999999999999999999 999999999999997 9999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|+.++|.+++++|.+.|..|+..||+.++..|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC
Q 045917 146 ACK 148 (162)
Q Consensus 146 ~~g 148 (162)
..+
T Consensus 222 s~~ 224 (501)
T 4g26_A 222 SEV 224 (501)
T ss_dssp SHH
T ss_pred cCc
Confidence 754
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.92 E-value=8.8e-26 Score=178.51 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=118.2
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC--------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM--------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 104 (162)
-..+||+||++|| .|++++|.++|++|. ||.+|||+||.+|++.|++++|.++|++|++.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3568999999999 999999999998763 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccc-hhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 105 VVKASDQCLLI-GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 105 li~~~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+|+++|+.|.. ++|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999985 789999999999999999999999999999988888887776554
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.7e-22 Score=159.97 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=120.7
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHH---HhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHHH
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFL---KTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIRA 73 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~~ 73 (162)
.+++++.+.++|++++|.++++.|. +.|+.||..|||+||++|| .|++++|.++|++|. ||.+|||++|.+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g 209 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 5788889999999999999998876 4689999999999999999 999999999999997 999999999999
Q ss_pred HHcCCCc-hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc------hhHHHHHHHHHHh
Q 045917 74 YAKTSCS-IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD------KYIGNTLLRMYAA 146 (162)
Q Consensus 74 ~~~~~~~-~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~~ll~~y~~ 146 (162)
+++.|+. ++|.++|++|.+.|+.||..||++++.++.+.+-++.++++ ..++.|+ ..+..-|.+.|++
T Consensus 210 lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHHHHHHcc
Confidence 9999985 78999999999999999999999999887776555555444 2344444 5566667778876
Q ss_pred cC
Q 045917 147 CK 148 (162)
Q Consensus 147 ~g 148 (162)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.64 E-value=4.8e-15 Score=113.28 Aligned_cols=151 Identities=9% Similarity=-0.021 Sum_probs=79.2
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~ 81 (162)
...+...|+.++|.++++.+.+.+ +.+..+++.+...|. .|++++|...|+.+. .+..+|+.+...|.+.|+++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 334444455555555555544332 224445555555555 555555555555543 33555555555555555555
Q ss_pred HHHHHHHHHHHc----CCCCC--CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHH
Q 045917 82 ESIKLFDEMLKT----GLRPD--NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 82 ~a~~~~~~m~~~----~~~p~--~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
+|.++|+++.+. +..|+ ..+|..+...|.+.|++++|..+++.+.+.+ +.+..+|..+..+|.+.|++++|.+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 555555555443 44454 3455555555555555555555555555443 2345555555555555555555555
Q ss_pred hhcc
Q 045917 156 LFDE 159 (162)
Q Consensus 156 ~~~~ 159 (162)
.|++
T Consensus 572 ~~~~ 575 (597)
T 2xpi_A 572 HLHE 575 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.63 E-value=4.9e-15 Score=113.24 Aligned_cols=152 Identities=11% Similarity=-0.001 Sum_probs=79.2
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCc
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~ 80 (162)
+...+...|+.++|.++++.+.+. .+.++.+++.+...|. .|++++|..+|+++. .+..+|+.++.+|.+.|++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344444555555555555555432 2334455555555555 555555555555543 2344555555555555555
Q ss_pred hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
++|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|.+++..+.+.. +.+..+|+.+..+|.+.|++++|.++|+++
T Consensus 424 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 424 DQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555554432 2244555555555555555555555555554432 224455555555555555555555555443
No 7
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=2.9e-10 Score=80.37 Aligned_cols=150 Identities=8% Similarity=-0.072 Sum_probs=115.1
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCch-hHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchH
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNT-YIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~ 82 (162)
.+...+...++.+.|.+.++.+...+..|+. ..+..+-..+. .|++++|...++. +.+...+..+...|.+.|++++
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3445556667788889999888877765654 44444446666 9999999999998 6667788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccHHHH----HHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFV----VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~l----i~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
|...|+++.+.. |+.. ...+ +..+...|++++|..+++.+.+. .+.+...++.+-.+|.+.|++++|.+.|+
T Consensus 149 A~~~l~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998753 6543 2223 33334458899999999998887 45678889999999999999999999887
Q ss_pred c
Q 045917 159 E 159 (162)
Q Consensus 159 ~ 159 (162)
+
T Consensus 225 ~ 225 (291)
T 3mkr_A 225 E 225 (291)
T ss_dssp H
T ss_pred H
Confidence 6
No 8
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.23 E-value=7.3e-10 Score=75.74 Aligned_cols=151 Identities=7% Similarity=-0.030 Sum_probs=107.7
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~ 82 (162)
..+...|+.++|.+.++.+.+.. +.++..+..+-..|. .|++++|...|++.. .+...|..+...|...|++++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 34455577788888887776653 334566777777777 888888888888765 356677777788888888888
Q ss_pred HHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 83 SIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 83 a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
|.+.|++..+.+..| +...+..+...+...|++++|...+....+.. +.+...+..+...|.+.|++++|.+.|++.
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888876633344 34456667777778888888888887777654 234667777777888888888887777653
No 9
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.23 E-value=1.3e-09 Score=72.92 Aligned_cols=153 Identities=11% Similarity=-0.048 Sum_probs=119.7
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcC-CC
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKT-SC 79 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~-~~ 79 (162)
+...+...|+.++|.+.+....+.. +.++..+..+-..|. .|++++|...|+... .+...|..+...+... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3445566688889998888887654 335667777888888 999999999998876 4677888888899999 99
Q ss_pred chHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 80 SIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+++|...+++..+.+..|+ ...+..+...+...|++++|...+....+.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999877333333 4567777888888999999999988887764 3357788888889999999999998887
Q ss_pred cc
Q 045917 159 EM 160 (162)
Q Consensus 159 ~m 160 (162)
+.
T Consensus 172 ~~ 173 (225)
T 2vq2_A 172 KY 173 (225)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.20 E-value=2.7e-10 Score=82.83 Aligned_cols=123 Identities=10% Similarity=0.024 Sum_probs=66.0
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
+.++..+-..|. .|++++|...|+.+. | +..+|..+...+.+.|++++|.+.|+++.+. .+.+..++..+...+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHH
Confidence 344555555555 555555555555543 2 2445555555555555666666555555443 223444555555555
Q ss_pred hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566666655555554431 22345555566666666666666665554
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.20 E-value=1e-09 Score=79.73 Aligned_cols=123 Identities=9% Similarity=-0.011 Sum_probs=88.4
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.+..+-..+. .|++++|...|+... | +..+|..+...|.+.|++++|.+.|+++.+.+ +.+..++..+...+.+
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3344444444 555555555555443 3 46677888888888888888888888887642 1234567888888888
Q ss_pred hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
.|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888999988888887763 4567888888888999999999988887653
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.18 E-value=1e-09 Score=80.99 Aligned_cols=85 Identities=9% Similarity=-0.073 Sum_probs=45.4
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHH
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a 153 (162)
+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|..++..+.+.. +.+..+|..+..+|...|++++|
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 444445555555554444321 1233445555555666666666666666655543 23455666666666666666666
Q ss_pred HHhhccc
Q 045917 154 KALFDEM 160 (162)
Q Consensus 154 ~~~~~~m 160 (162)
.+.|+++
T Consensus 231 ~~~~~~~ 237 (450)
T 2y4t_A 231 LSEVREC 237 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.17 E-value=1e-09 Score=80.97 Aligned_cols=149 Identities=8% Similarity=-0.030 Sum_probs=85.6
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHH-----------
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTL----------- 70 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~l----------- 70 (162)
..++..+|+.++|.+.+..+.+.. +.++.++..+...|. .|++++|...|+.+. |+ ...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655442 234555666666666 666666666666654 32 2233333
Q ss_pred -HHHHHcCCCchHHHHHHHHHHHcCCCCC-----CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHH
Q 045917 71 -IRAYAKTSCSIESIKLFDEMLKTGLRPD-----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144 (162)
Q Consensus 71 -i~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y 144 (162)
...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...+..+.+.. +.+...|..+..+|
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 55566666666666666666542 233 2245555666666666666666666665542 23456666666666
Q ss_pred HhcCChhHHHHhhcc
Q 045917 145 AACKEIDFAKALFDE 159 (162)
Q Consensus 145 ~~~g~~~~a~~~~~~ 159 (162)
.+.|++++|.+.|++
T Consensus 340 ~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 340 LIEEMYDEAIQDYET 354 (450)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHH
Confidence 677777776666654
No 14
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.12 E-value=6.1e-09 Score=70.51 Aligned_cols=149 Identities=7% Similarity=-0.068 Sum_probs=101.5
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~ 82 (162)
.++...|+.++|...++...+.. +.+...+..+-..+. .|++++|...|+... .+...|..+...+...|++++
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 34445567777777777666543 234556666666666 777777777777665 356667777777777788888
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
|...+++..+.. +.+...+..+...+.+.|++++|...+....+.. +.+..++..+..+|.+.|++++|.+.|++
T Consensus 144 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 144 ALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888777766542 2245556667777777788888887777776653 23466777777788888888888777765
No 15
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=2.9e-09 Score=68.87 Aligned_cols=151 Identities=7% Similarity=-0.044 Sum_probs=123.4
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~ 81 (162)
...+...|+.++|...++.+.+.. +.++..+..+-..+. .|++++|...++... .+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Confidence 344555678888888887775442 335677888888888 999999999999876 46778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+|.+.+++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.+.|++++|.+.+++.
T Consensus 94 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 94 LAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999987652 3456677888889999999999999999988764 346788999999999999999999998753
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.08 E-value=7.1e-09 Score=70.76 Aligned_cols=152 Identities=9% Similarity=-0.031 Sum_probs=125.6
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-----C-ChhHHHHHHHHHHcCC
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-----P-PLFAYNTLIRAYAKTS 78 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~-~~~~~~~li~~~~~~~ 78 (162)
+..++...|+.++|.+.+....+.. +.+...+..+-..|. .|++++|...|+... | +...|..+...+...|
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 4455666789999999999887764 335677888888888 999999999999874 3 4677888889999999
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++++|...|++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.+.|+.++|.+.++
T Consensus 156 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp CHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999987653 2346678888999999999999999999987753 3567788899999999999999999987
Q ss_pred cc
Q 045917 159 EM 160 (162)
Q Consensus 159 ~m 160 (162)
++
T Consensus 234 ~~ 235 (252)
T 2ho1_A 234 QL 235 (252)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.08 E-value=9.6e-09 Score=72.46 Aligned_cols=153 Identities=6% Similarity=-0.090 Sum_probs=115.4
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCc
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~ 80 (162)
+..++...|+.++|...+....+.... +...+..+-..|. .|++++|...|+... .+...|..+...+...|++
T Consensus 131 l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 131 YGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH
Confidence 344555667788888888877665422 3445555667777 888888888888775 4567788888888889999
Q ss_pred hHHHHHHHHHHHcC--------CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhH
Q 045917 81 IESIKLFDEMLKTG--------LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 81 ~~a~~~~~~m~~~~--------~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
++|...+++..+.. ...+..++..+...+.+.|++++|...++...+.. +.+...+..+-.+|.+.|++++
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 288 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFEN 288 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHH
Confidence 99999988876531 13345677888888888899999999888887764 3457788888889999999999
Q ss_pred HHHhhccc
Q 045917 153 AKALFDEM 160 (162)
Q Consensus 153 a~~~~~~m 160 (162)
|.+.|++.
T Consensus 289 A~~~~~~a 296 (330)
T 3hym_B 289 AVDYFHTA 296 (330)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99888765
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.08 E-value=5.5e-09 Score=73.62 Aligned_cols=149 Identities=5% Similarity=-0.004 Sum_probs=124.4
Q ss_pred HHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~ 84 (162)
+...|+.++|...+..+.+.. +.++..+..+-..+. .|++++|...++... .+...|..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 334467888888888887664 336778888888889 999999999999886 45788999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc-----------chhHHHHHHHHHHhcCChhHH
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS-----------DKYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~-----------~~~~~~~ll~~y~~~g~~~~a 153 (162)
..|++..+.. +.+..++..+...+.+.|++++|...++...+..... +...|..+..+|.+.|+.++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9999987643 2356678889999999999999999999988765332 578899999999999999999
Q ss_pred HHhhccc
Q 045917 154 KALFDEM 160 (162)
Q Consensus 154 ~~~~~~m 160 (162)
.+++++.
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 9998764
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.08 E-value=3.5e-09 Score=74.81 Aligned_cols=145 Identities=8% Similarity=-0.045 Sum_probs=116.0
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHH---HHHHHHHHcCCC
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAY---NTLIRAYAKTSC 79 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~---~~li~~~~~~~~ 79 (162)
..++...|+.++|.+.++. +.++..+..+...+. .|+.++|...|+.+. |+.... ...+..+...|+
T Consensus 108 a~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 3455666888888888776 567788888889999 999999999999997 664322 233444556699
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhH-HHHhhc
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF-AKALFD 158 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~-a~~~~~ 158 (162)
+++|..+|+++.+. .+.+...++.+..++.+.|++++|+..++...+.. +-+..++..+...+...|+.++ +.++++
T Consensus 182 ~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 182 LQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999876 44577778889999999999999999999988764 3467889999999999999976 567766
Q ss_pred c
Q 045917 159 E 159 (162)
Q Consensus 159 ~ 159 (162)
+
T Consensus 260 ~ 260 (291)
T 3mkr_A 260 Q 260 (291)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.08 E-value=1.3e-11 Score=91.44 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=14.6
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchH
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~ 82 (162)
.++-.++..+|++++|.++++.+ +++.+|..|..++. .|++++|...|... +|..+|..++.++...|++++
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCHHH
Confidence 34556677778888888877776 33347888888888 88888888887543 555577777777777788887
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
|...++..++. .+++.+.+.++.+|.+.|++.++++++. .|+..+|..+-+.|...|++++|...|+.+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 77755544432 3445666677777777777777666653 245556666666666666666666666554
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.07 E-value=5.1e-09 Score=70.89 Aligned_cols=149 Identities=9% Similarity=0.002 Sum_probs=117.3
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a 83 (162)
.+...|+.++|...++...+.. +.+...+..+-..+. .|++++|...|+... .+...|..+...+...|++++|
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ----------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHH
Confidence 3445578899999999887643 335677778888888 999999999999876 4678889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+.+++..+.. +.+...+..+...+.+.|++++|...+....+.. +.+...+..+...|.+.|++++|.+.|++.
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 111 KDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987653 2356677888899999999999999999988764 346788899999999999999999998763
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3e-09 Score=72.55 Aligned_cols=149 Identities=9% Similarity=-0.055 Sum_probs=93.0
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC--------hhHHHHHHHHHH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP--------LFAYNTLIRAYA 75 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~--------~~~~~~li~~~~ 75 (162)
..+...|+.++|...+....+.. .++..+..+-..+. .|++++|...|+... |+ ...|..+-..+.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 34445567777777777776666 56666666666667 777777777777654 22 466667777777
Q ss_pred cCCCchHHHHHHHHHHHcC------------------------CCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 76 KTSCSIESIKLFDEMLKTG------------------------LRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~------------------------~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
..|++++|...|++..+.. ..| +...+..+...+...|++++|...+....+..
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 169 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA- 169 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 7777777777777765521 111 22334455556666666666666666665543
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 131 HSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 131 ~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+.+...+..+-.+|.+.|++++|.+.|++
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 23455666666666666666666666654
No 23
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.07 E-value=1.9e-08 Score=65.67 Aligned_cols=152 Identities=11% Similarity=-0.090 Sum_probs=125.0
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCC
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~ 79 (162)
.+-..+...|++++|.+.++...+.. +-++..+..+-..|. .|++++|...++... .+...+..+-..+...++
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE 88 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC
Confidence 34455667789999999999987764 335677888888888 999999999999886 456677777788889999
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
++.+...+.+..+.. +-+...+..+-..+.+.|++++|.+.++...+.. +.+...|..+-.+|.+.|++++|.+.|++
T Consensus 89 ~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 89 KQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999986642 2345567778889999999999999999988864 34678899999999999999999999875
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.07 E-value=2.1e-09 Score=72.63 Aligned_cols=144 Identities=6% Similarity=-0.188 Sum_probs=64.5
Q ss_pred HhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-C-----------CChHHHHHHhhhhC---C-ChhHHHHHHHHHH
Q 045917 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-P-----------ISLHFTRSLFNNVM---P-PLFAYNTLIRAYA 75 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~-----------~~~~~a~~~~~~m~---~-~~~~~~~li~~~~ 75 (162)
..|+.++|...++...+.. +.++..+..+-..+. . |++++|...|+... | +...|..+=..+.
T Consensus 51 ~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 51 KLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3344455555554444332 122333444444444 4 55555555555443 2 2444444555555
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHH
Q 045917 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
..|++++|...|++..+.. .+...+..+-..+...|++++|...++...+.. +.+...+..+-..|.+.|++++|.+
T Consensus 130 ~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 130 LLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------
T ss_pred HcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 5555555555555555444 444455555555555555555555555555432 2234455555555555555555555
Q ss_pred hhcc
Q 045917 156 LFDE 159 (162)
Q Consensus 156 ~~~~ 159 (162)
.|++
T Consensus 207 ~~~~ 210 (217)
T 2pl2_A 207 AAAL 210 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.06 E-value=6.9e-09 Score=74.52 Aligned_cols=147 Identities=10% Similarity=-0.071 Sum_probs=123.9
Q ss_pred HhhchhhhcchhHHHHHhcCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHH
Q 045917 12 LSKTAHHHHQLPALFLKTSLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
..|+.++|...+..+.+..... ++.++..+-..|. .|++++|...|+... | +...|..+...+.+.|++++|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6788999999999987765432 5788888999999 999999999999876 4 57889999999999999999999
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc----------chhHHHHHHHHHHhcCChhHHHH
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS----------DKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~----------~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
.|++..+.. +.+...+..+...+.+.|++++|...+....+..... ...+|..+..+|.+.|+.++|.+
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987642 2345678889999999999999999999887754221 16789999999999999999999
Q ss_pred hhcc
Q 045917 156 LFDE 159 (162)
Q Consensus 156 ~~~~ 159 (162)
++.+
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 26
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=3.4e-09 Score=64.89 Aligned_cols=121 Identities=11% Similarity=-0.029 Sum_probs=84.8
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
+..+-..+. .|++++|...|+.+. .+...|..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 445555666 777778877777765 356667777777777788888888887776543 22344566677777778
Q ss_pred ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 113 LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 113 ~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 88888888877776653 234667777778888888888888877654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.04 E-value=5.9e-10 Score=82.64 Aligned_cols=128 Identities=9% Similarity=0.004 Sum_probs=58.4
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
...++|++.+++++++ .|+..+|..+-..|. .|++++|...|..+. .|.-+..++.+.|++++|.+.+
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----NFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT----CHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----hHHHHHHHHHHhccHHHHHHHH
Confidence 3444444444444442 234445555555555 555555555555543 5666666666666666666666
Q ss_pred HHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 88 DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 88 ~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+++ .+..+|..++.+|...|+++.|...... +..++.-...++..|.+.|++++|.++++
T Consensus 172 ~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 172 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 655 2455666666666666666666433322 11222223456666777777777766654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.03 E-value=2.4e-09 Score=77.16 Aligned_cols=148 Identities=11% Similarity=-0.041 Sum_probs=75.2
Q ss_pred HHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~ 84 (162)
+...|+.++|.+.++.+.+.. +.++..+..+-..|. .|++++|...|+... | +..+|..+...|...|++++|.
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHH
Confidence 334455555555555554432 223445555555555 555555555555544 2 3445555555555555555555
Q ss_pred HHHHHHHHcC------------------------------------------CCC---CCccHHHHHHHhhhhccchhhh
Q 045917 85 KLFDEMLKTG------------------------------------------LRP---DNLTYPFVVKASDQCLLIGVGG 119 (162)
Q Consensus 85 ~~~~~m~~~~------------------------------------------~~p---~~~t~~~li~~~~~~~~~~~a~ 119 (162)
..|++..+.. ..| +..++..+...+.+.|++++|.
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555543311 001 2344455555555555555555
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+....+.. +.+..+|..+-.+|.+.|++++|.+.|++
T Consensus 234 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 234 DAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555442 22345555555555555555555555543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.02 E-value=6.7e-09 Score=74.79 Aligned_cols=152 Identities=10% Similarity=-0.100 Sum_probs=123.8
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCC-CchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCc
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLD-HNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~ 80 (162)
..++...|+.++|.+.++.+.+.... +++.++..+-..|. .|++++|...|+... .+..+|+.+-..|.+.|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 44556668899999999999877543 26788899999999 999999999999876 4688999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcC-----------cchhHHHHHHHHHHhcCC
Q 045917 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH-----------SDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~-----------~~~~~~~~ll~~y~~~g~ 149 (162)
++|...|++..+.. +.+..++..+...+.+.|++++|...++...+.... .+..+|..+-.+|...|+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 99999999987642 234667888999999999999999999998775421 136889999999999999
Q ss_pred hhHHHHhhcc
Q 045917 150 IDFAKALFDE 159 (162)
Q Consensus 150 ~~~a~~~~~~ 159 (162)
.+.+.++..+
T Consensus 343 ~~~a~~~~~~ 352 (365)
T 4eqf_A 343 PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.00 E-value=3e-08 Score=66.10 Aligned_cols=153 Identities=9% Similarity=-0.098 Sum_probs=124.6
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-C-CChHHHHHHhhhhC-----C-ChhHHHHHHHHHHcC
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-P-ISLHFTRSLFNNVM-----P-PLFAYNTLIRAYAKT 77 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~-~~~~~a~~~~~~m~-----~-~~~~~~~li~~~~~~ 77 (162)
+..++...|+.++|.+.++...+.. +.+...+..+...+. . |++++|...|+... | +...|..+...+...
T Consensus 48 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 126 (225)
T 2vq2_A 48 RAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ 126 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc
Confidence 4455566688999999998887764 335677888888888 9 99999999999874 2 257788899999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
|++++|...|++..+.. +.+...+..+...+.+.|++++|...+....+.....+...+..+...+...|+.+.|...+
T Consensus 127 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 127 GQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999987653 23466778888999999999999999999887653256777888888999999999999887
Q ss_pred ccc
Q 045917 158 DEM 160 (162)
Q Consensus 158 ~~m 160 (162)
+.+
T Consensus 206 ~~~ 208 (225)
T 2vq2_A 206 AQL 208 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.98 E-value=1.9e-08 Score=67.85 Aligned_cols=149 Identities=12% Similarity=0.021 Sum_probs=124.1
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcC---
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKT--- 77 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~--- 77 (162)
+...+...|+.++|...++...+.. +.++..+..+-..+. .|++++|...|+... | +...|..+-..+...
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence 3445666789999999998887653 335666777777778 999999999999876 4 567888888889899
Q ss_pred --------CCchHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcC
Q 045917 78 --------SCSIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148 (162)
Q Consensus 78 --------~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g 148 (162)
|++++|...|++..+. .|+ ...+..+-..+...|++++|...++...+.. .+...+..+-.+|...|
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMG 165 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT
T ss_pred hhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcC
Confidence 9999999999998764 344 4567778888999999999999999999887 68889999999999999
Q ss_pred ChhHHHHhhcc
Q 045917 149 EIDFAKALFDE 159 (162)
Q Consensus 149 ~~~~a~~~~~~ 159 (162)
++++|...|++
T Consensus 166 ~~~~A~~~~~~ 176 (217)
T 2pl2_A 166 RLDEALAQYAK 176 (217)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999875
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.98 E-value=2.1e-08 Score=72.01 Aligned_cols=151 Identities=11% Similarity=-0.042 Sum_probs=100.4
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~ 81 (162)
...+...|+.++|...+..+.+.. +.++..+..+-..+. .|++++|...|+... .+..+|..+...|...|+++
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 344556678888888888887653 345667777878888 999999999998876 46778888888888999999
Q ss_pred HHHHHHHHHHHcCCC-----------------------------------------------C---CCccHHHHHHHhhh
Q 045917 82 ESIKLFDEMLKTGLR-----------------------------------------------P---DNLTYPFVVKASDQ 111 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~-----------------------------------------------p---~~~t~~~li~~~~~ 111 (162)
+|...|+++.+..-. | +..++..+...+.+
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 999888887654211 1 23344445555555
Q ss_pred hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 112 CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|++++|...+....+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 230 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555555442 22345555555556666666666555544
No 33
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.97 E-value=2.8e-08 Score=70.04 Aligned_cols=143 Identities=9% Similarity=-0.104 Sum_probs=81.9
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
+.++|.+.++...+.. +.++..+..+-..+. .|++++|...|+... | +...+..+-..|...|++++|...+++
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555554332 223444555555555 666666666666554 2 244555566666666666666666666
Q ss_pred HHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc--------CcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--------HSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 90 m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~--------~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+.. +.+...+..+...+...|++++|...+....+... +.+..++..+-.+|.+.|++++|.+.|++
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 65432 22345556666666667777777777666655321 22345666677777777777777766654
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.2e-08 Score=74.79 Aligned_cols=150 Identities=9% Similarity=-0.076 Sum_probs=126.6
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~ 81 (162)
...+...|+.++|...+....+.... +..+..+...+. .|++++|...|+... .+...|..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 33445567899999999998877644 778888888888 999999999999875 46778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+|...|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|++.
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999997753 2356678889999999999999999999988763 346788999999999999999999998764
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.91 E-value=1.1e-07 Score=71.58 Aligned_cols=148 Identities=8% Similarity=-0.096 Sum_probs=124.9
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a 83 (162)
.+...|+.++|...+....+.. |+...+..+-..+. .|++++|...|+... .+..+|..+-..+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344467889999998887764 44777888888888 999999999999886 4578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
...|++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+-..|...|++++|.+.|++.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999987753 2346678889999999999999999999998864 345778999999999999999999998763
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.91 E-value=7.1e-08 Score=67.87 Aligned_cols=148 Identities=8% Similarity=-0.060 Sum_probs=95.3
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~ 82 (162)
..+...|++++|..+++.+.+.. +.++..+..+-..+. .|++++|...|+... .+...|..+...+...|++++
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHH
Confidence 34556678888999888887654 335667777777788 999999999998876 357788888888888999999
Q ss_pred HHHHHHHHHHcCCCCCCc-cHHHH--------------HH-HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 83 SIKLFDEMLKTGLRPDNL-TYPFV--------------VK-ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~-t~~~l--------------i~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
|...+++..+.. |+.. .+..+ .. .+...|++++|...+..+.+.. +.+...+..+...|.+
T Consensus 108 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 108 ALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 999988876542 2211 12111 11 2445555666666555555442 2244555555555555
Q ss_pred cCChhHHHHhhcc
Q 045917 147 CKEIDFAKALFDE 159 (162)
Q Consensus 147 ~g~~~~a~~~~~~ 159 (162)
.|++++|.+.|++
T Consensus 185 ~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 185 SNNYDSAAANLRR 197 (327)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 6666655555543
No 37
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.89 E-value=8.7e-08 Score=71.56 Aligned_cols=151 Identities=10% Similarity=-0.027 Sum_probs=103.2
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~ 81 (162)
..++...|+.++|...+....+.. +.++..+..+-..+. .|++++|...|+... .+...|..+-..+...|+++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 344455567777777777766543 224556667777777 788888888777765 34667777777788888888
Q ss_pred HHHHHHHHHHHcCC-CCC----CccHHHHHHHhhh---hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHH
Q 045917 82 ESIKLFDEMLKTGL-RPD----NLTYPFVVKASDQ---CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 82 ~a~~~~~~m~~~~~-~p~----~~t~~~li~~~~~---~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a 153 (162)
+|...|++..+..- .++ ...+..+...+.. .|++++|...+....+.. +.+...+..+..+|.+.|++++|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 88888877754311 111 2267777777777 788888888887777653 23466777778888888888888
Q ss_pred HHhhcc
Q 045917 154 KALFDE 159 (162)
Q Consensus 154 ~~~~~~ 159 (162)
.+.|++
T Consensus 469 ~~~~~~ 474 (514)
T 2gw1_A 469 ITLFEE 474 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.88 E-value=9e-08 Score=65.08 Aligned_cols=152 Identities=11% Similarity=-0.072 Sum_probs=121.8
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcC--CCc----hhHHHHHHHhhC-CCChHHHHHHhhhhC---C-------------
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSL--DHN----TYIISRFILTSL-PISLHFTRSLFNNVM---P------------- 62 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~------------- 62 (162)
+...+...|+.++|...+........ .++ +..+..+-..|. .|++++|...|+... |
T Consensus 44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (258)
T 3uq3_A 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence 44556666888999998888765432 222 567788888888 999999999988764 2
Q ss_pred --------------ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 63 --------------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 63 --------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
+...|..+-..+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+....+.
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 24567778888999999999999999987653 235677888899999999999999999999886
Q ss_pred hcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 129 ~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
. +.+...|..+-.+|.+.|++++|.+.|++
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4 34578899999999999999999998875
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.84 E-value=9.5e-08 Score=65.74 Aligned_cols=142 Identities=9% Similarity=-0.098 Sum_probs=93.2
Q ss_pred hchhhhcchhHHHHHhcCC---CchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLD---HNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
++.++|...++.+.+.... .++..+..+-..+. .|++++|...|+... .+...|..+-..|...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 5667777777777654321 13455666666666 788888887777765 346777777777777788888888
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.|++..+.. +.+...+..+...+.+.|++++|...+..+.+.. |+.......+..+...|++++|...++
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 877776542 2245566777777777777877777777776643 443444444455556677777776664
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.82 E-value=5.1e-08 Score=68.13 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=119.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHh-------cCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC------------CChh
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKT-------SLDHNTYIISRFILTSL-PISLHFTRSLFNNVM------------PPLF 65 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------------~~~~ 65 (162)
+...+...|+.++|...+....+. ..+.....+..+-..|. .|++++|...|+... ....
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 445556668899999888887653 23334566777778888 999999999988764 2356
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc------CCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHH------hcCc
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT------GLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKV------GLHS 132 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~------~~~~ 132 (162)
.+..+-..|...|++++|...|++..+. +-.| ....+..+...+...|++++|...+....+. +..|
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 7888889999999999999999998654 2222 3445777888899999999999999888765 2123
Q ss_pred -chhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 133 -DKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 133 -~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
...++..+-.+|.+.|++++|.+.|++.
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888999999999999999998764
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.82 E-value=1.2e-07 Score=67.16 Aligned_cols=141 Identities=10% Similarity=0.030 Sum_probs=83.8
Q ss_pred hhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hh-HHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 17 HHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LF-AYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
++|..+++.....-.+-+...|..+...+. .|++++|..+|+... |+ .. .|..+...+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 566666666655312234456777777777 788888888887765 43 32 6777777777777777777777777
Q ss_pred HHcCCCCCCccHHHHHHHhh-hhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 91 LKTGLRPDNLTYPFVVKASD-QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 91 ~~~~~~p~~~t~~~li~~~~-~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+..- ++...|........ ..|+.++|..+++...+.. +-+...|..+...+.+.|++++|..+|++
T Consensus 161 ~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 65321 22222222211111 1466666666666665542 23456666666666666666666666654
No 42
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.80 E-value=2e-07 Score=73.61 Aligned_cols=151 Identities=7% Similarity=-0.046 Sum_probs=127.2
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCC
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~ 79 (162)
-+-.++...|++++|.+.|+...+.. +-+...++.+=..|. .|++++|...|++.. | +...|+.+=..|...|+
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566777899999999999987764 234677888888888 999999999999876 4 57889999999999999
Q ss_pred chHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 80 SIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+++|.+.|++..+. .|+ ...++.+-..+.+.|++++|...++...+.. +-+...+..+..+|...|++++|.+.++
T Consensus 93 ~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 93 VQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 99999999998763 343 5678889999999999999999999988864 2357889999999999999999998876
Q ss_pred c
Q 045917 159 E 159 (162)
Q Consensus 159 ~ 159 (162)
+
T Consensus 170 k 170 (723)
T 4gyw_A 170 K 170 (723)
T ss_dssp H
T ss_pred H
Confidence 5
No 43
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=4e-08 Score=67.58 Aligned_cols=155 Identities=10% Similarity=-0.055 Sum_probs=117.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHh------cCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC--------C----Chh
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKT------SLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM--------P----PLF 65 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--------~----~~~ 65 (162)
+..++...|+.++|...+...... +-.| ...++..+-..|. .|++++|...|+... + ...
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 128 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 444555567889999888887654 2223 4566777888888 999999999988764 1 256
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc------CCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHh---------
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT------GLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG--------- 129 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~--------- 129 (162)
+|..+-..|...|++++|...|++..+. +-.| ...++..+...+...|++++|...+....+..
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 6888888999999999999999998654 1122 34567778899999999999999998876541
Q ss_pred ---------------------------------------cCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 130 ---------------------------------------LHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 130 ---------------------------------------~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+.....+..+-..|.+.|++++|.+.|++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223456788899999999999999998763
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.80 E-value=1.2e-07 Score=67.17 Aligned_cols=153 Identities=10% Similarity=0.005 Sum_probs=118.1
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCc-hh-HHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHH-HHc
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHN-TY-IISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRA-YAK 76 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~-~~~ 76 (162)
.+..++...|+.++|..+|+...+. .|+ +. .|..+...+. .|++++|..+|+... | +...|...... +..
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4555666778899999999998873 443 33 7888888888 999999999999876 3 33444433322 223
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh-cCc--chhHHHHHHHHHHhcCChhHH
Q 045917 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHS--DKYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~-~~~--~~~~~~~ll~~y~~~g~~~~a 153 (162)
.|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+++...+.. ..| ....|..++..+.+.|+.+.|
T Consensus 182 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 699999999999986642 2355677888899999999999999999998863 344 367899999999999999999
Q ss_pred HHhhccc
Q 045917 154 KALFDEM 160 (162)
Q Consensus 154 ~~~~~~m 160 (162)
..++++.
T Consensus 261 ~~~~~~a 267 (308)
T 2ond_A 261 LKVEKRR 267 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 45
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=5.3e-08 Score=68.05 Aligned_cols=154 Identities=9% Similarity=-0.055 Sum_probs=117.2
Q ss_pred HHHHHHHhhchhhhcchhHHHHHh------cCC-CchhHHHHHHHhhC-CCChHHHHHHhhhhC------------CChh
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKT------SLD-HNTYIISRFILTSL-PISLHFTRSLFNNVM------------PPLF 65 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------------~~~~ 65 (162)
+..++...|+.++|...+...... +-. .....+..+-..|. .|++++|...|++.. ....
T Consensus 75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 444555667888998888877654 222 34566777888888 999999999998764 1345
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc------CCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHh---------
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT------GLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG--------- 129 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~--------- 129 (162)
.+..+-..+...|++++|.+.|++..+. +-.| ...++..+...+...|++++|...+....+..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6788888999999999999999998654 1122 23457778889999999999999998877531
Q ss_pred ---------------------------------------cCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 130 ---------------------------------------LHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 130 ---------------------------------------~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+.+..++..+-.+|.+.|++++|.+.|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 123456788899999999999999999875
No 46
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.78 E-value=2.1e-07 Score=59.90 Aligned_cols=123 Identities=11% Similarity=-0.060 Sum_probs=103.1
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
..+..+-..+. .|++++|...|+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555666677 999999999999987 467788899999999999999999999987652 235567788888999
Q ss_pred hhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 111 QCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 111 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
..|++++|...+....+.. +.+...+..+...|.+.|++++|.+.|++.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999999999988764 356788889999999999999999998763
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.78 E-value=3.7e-07 Score=62.75 Aligned_cols=151 Identities=13% Similarity=-0.005 Sum_probs=111.3
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~ 81 (162)
...+...|+.++|...+....+.. +.++..+..+-..|. .|++++|...|+... | +...|..+-..|...|+++
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHH
Confidence 344455578888999888887764 335677888888888 999999999999886 4 5788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh-----------------------------c--
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-----------------------------L-- 130 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~-----------------------------~-- 130 (162)
+|...|++..+. .|+.......+..+...|+.++|...+....... +
T Consensus 129 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 129 LAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 999999998763 4555555555555666778888877775544321 0
Q ss_pred Cc-----chhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 131 HS-----DKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 131 ~~-----~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.| +...+..+-.+|.+.|++++|...|++.
T Consensus 207 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 207 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01 1466677778888888888888887653
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.78 E-value=2.3e-07 Score=65.93 Aligned_cols=80 Identities=11% Similarity=-0.149 Sum_probs=36.9
Q ss_pred HHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
...|+.++|...+....+.. +.++..+..+-..+. .|++++|...|+... | +...|..+-..+...|++++|..
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHH
Confidence 33445555555555544432 122334444444444 555555555555443 2 33444444444445555555555
Q ss_pred HHHHHH
Q 045917 86 LFDEML 91 (162)
Q Consensus 86 ~~~~m~ 91 (162)
.|++..
T Consensus 93 ~~~~~~ 98 (359)
T 3ieg_A 93 DFKKVL 98 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 49
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.77 E-value=2.8e-07 Score=56.07 Aligned_cols=122 Identities=8% Similarity=-0.063 Sum_probs=100.4
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCC
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~ 79 (162)
.+...+...|+.++|..++..+.+.. +.++..+..+...+. .|++++|...|+... .+...|..+...+...|+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 34556667789999999999887764 335667777888888 999999999999886 457788889999999999
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
+++|...++++.+.. +.+...+..+...+.+.|+.++|...+..+.+.
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999987653 234567788889999999999999999888765
No 50
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.76 E-value=2.2e-07 Score=66.01 Aligned_cols=152 Identities=11% Similarity=-0.082 Sum_probs=122.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C---C-hhHHHHH-------
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P---P-LFAYNTL------- 70 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~---~-~~~~~~l------- 70 (162)
+...+...|+.++|...++...+.. +.++..+..+-..+. .|++++|...|+... | + ...+..+
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 43 RATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 3445556688999999999887764 335577888888888 999999999999886 6 3 3344444
Q ss_pred -----HHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 71 -----IRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 71 -----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 478888999999999999987653 2456677888899999999999999999988764 456888999999999
Q ss_pred hcCChhHHHHhhccc
Q 045917 146 ACKEIDFAKALFDEM 160 (162)
Q Consensus 146 ~~g~~~~a~~~~~~m 160 (162)
..|++++|.+.|++.
T Consensus 200 ~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 200 QLGDHELSLSEVREC 214 (359)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999998753
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.71 E-value=1.7e-07 Score=70.51 Aligned_cols=145 Identities=9% Similarity=-0.046 Sum_probs=98.0
Q ss_pred hhch-hhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcC---------C
Q 045917 13 SKTA-HHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKT---------S 78 (162)
Q Consensus 13 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~---------~ 78 (162)
.|+. ++|.+.++...+.. +-++..|..+-..|. .|++++|...|+... |+...|..+-..|... |
T Consensus 115 ~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhh
Confidence 3566 77777777666543 223556666666777 777777777777765 6666777777777777 7
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh--------ccchhhhHHHHHHHHHhcC--cchhHHHHHHHHHHhcC
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC--------LLIGVGGSVHSLIFKVGLH--SDKYIGNTLLRMYAACK 148 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------~~~~~a~~i~~~~~~~~~~--~~~~~~~~ll~~y~~~g 148 (162)
++++|...|++..+.. +-+...|..+-..+... |++++|...++...+.... -+...|..+-.+|...|
T Consensus 194 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272 (474)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence 7777777777766542 12345566666777666 7777777777777665310 25667777777777888
Q ss_pred ChhHHHHhhcc
Q 045917 149 EIDFAKALFDE 159 (162)
Q Consensus 149 ~~~~a~~~~~~ 159 (162)
++++|.+.|++
T Consensus 273 ~~~~A~~~~~~ 283 (474)
T 4abn_A 273 SYGEALEGFSQ 283 (474)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88887777754
No 52
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.71 E-value=8.5e-07 Score=66.67 Aligned_cols=152 Identities=9% Similarity=-0.050 Sum_probs=108.0
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCc
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~ 80 (162)
+..++...|+.++|...++...+.. +.++..+..+-..+. .|++++|...|+... .+...|..+-..+...|++
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 3444555677888888887776654 234566777777777 888888888888775 3466788888888888888
Q ss_pred hHHHHHHHHHHHcCCC-CC----CccHHHHHHHhhhh----------ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 81 IESIKLFDEMLKTGLR-PD----NLTYPFVVKASDQC----------LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~-p~----~~t~~~li~~~~~~----------~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
++|...|++..+..-. ++ ...+......+... |++++|...+....+.. +.+...+..+-.+|.
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888888887553211 11 11122333455556 88888888888887764 345778889999999
Q ss_pred hcCChhHHHHhhcc
Q 045917 146 ACKEIDFAKALFDE 159 (162)
Q Consensus 146 ~~g~~~~a~~~~~~ 159 (162)
+.|++++|.+.|++
T Consensus 474 ~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 474 QMEKIDEAIELFED 487 (537)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 99999999998875
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.66 E-value=7.6e-07 Score=61.17 Aligned_cols=150 Identities=9% Similarity=-0.013 Sum_probs=102.3
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--C-C----hhHHHHHHHHHHcCC
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--P-P----LFAYNTLIRAYAKTS 78 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~-~----~~~~~~li~~~~~~~ 78 (162)
...+...|++++|...+....+... .++..+..+-..|. .|++++|...|+... | + ...|..+-..+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3445556788888888888765532 23445666666777 888888888888765 2 2 233777778888888
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH-HHHHhcCChhHHHHhh
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL-RMYAACKEIDFAKALF 157 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll-~~y~~~g~~~~a~~~~ 157 (162)
++++|.+.|++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+- ..|. .+++++|.+.|
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~ 165 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVKADSSF 165 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8888888888876642 2244667777888888888888888887766542 23455566665 4444 45888888877
Q ss_pred ccc
Q 045917 158 DEM 160 (162)
Q Consensus 158 ~~m 160 (162)
++.
T Consensus 166 ~~a 168 (272)
T 3u4t_A 166 VKV 168 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.65 E-value=2.1e-07 Score=69.92 Aligned_cols=153 Identities=7% Similarity=-0.119 Sum_probs=126.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-C---------CChHHHHHHhhhhC----CChhHHHHHH
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-P---------ISLHFTRSLFNNVM----PPLFAYNTLI 71 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~---------~~~~~a~~~~~~m~----~~~~~~~~li 71 (162)
+..++...|+.++|.+.++...+.. |+...+..+-..|. . |++++|...|++.. .+...|..+-
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 220 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455666689999999999887765 55678888888888 8 99999999999876 4578899999
Q ss_pred HHHHcC--------CCchHHHHHHHHHHHcCCC--CCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH
Q 045917 72 RAYAKT--------SCSIESIKLFDEMLKTGLR--PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 72 ~~~~~~--------~~~~~a~~~~~~m~~~~~~--p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll 141 (162)
..|... |++++|...|++..+..-. -+...|..+-..+...|++++|...++...+.. +-+...+..+-
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~ 299 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 999888 9999999999998774211 366778889999999999999999999988764 23567788999
Q ss_pred HHHHhcCChhHHHHhhcccC
Q 045917 142 RMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~m~ 161 (162)
.++...|++++|.+.+.+++
T Consensus 300 ~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 99999999999998877653
No 55
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.63 E-value=8.4e-08 Score=65.95 Aligned_cols=147 Identities=12% Similarity=0.009 Sum_probs=111.2
Q ss_pred hchhhhcchhHHHHHh-------cCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC------------CChhHHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKT-------SLDHNTYIISRFILTSL-PISLHFTRSLFNNVM------------PPLFAYNTLIRA 73 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------------~~~~~~~~li~~ 73 (162)
|+.++|...++..... ..+....++..+-..|. .|++++|...|++.. ....+|..+-..
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 4666676666555432 22234566777777888 999999999988764 235678889999
Q ss_pred HHcCCCchHHHHHHHHHHHc------CC-CCCCccHHHHHHHhhhhccchhhhHHHHHHHHH------hcCc-chhHHHH
Q 045917 74 YAKTSCSIESIKLFDEMLKT------GL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV------GLHS-DKYIGNT 139 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~------~~-~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~------~~~~-~~~~~~~ 139 (162)
|...|++++|.+.|++..+. .- +....++..+...+...|++++|...+....+. +-.| ...++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999997654 11 223556777888999999999999999888765 1123 3567888
Q ss_pred HHHHHHhcCChhHHHHhhccc
Q 045917 140 LLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~m 160 (162)
+-.+|.+.|++++|.+.|++.
T Consensus 175 la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999998763
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.60 E-value=1.3e-06 Score=56.78 Aligned_cols=126 Identities=11% Similarity=0.005 Sum_probs=103.7
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
-++.+|..+=..|. .|++++|...|+... | +..+|..+-..|.+.|++++|...+........ -+...+..+-.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 35677888888888 999999999999876 4 577899999999999999999999999866432 23445566667
Q ss_pred HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+...++++.+...+....+.. +.+...+..+-.+|.+.|++++|.+.|++.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 7888899999999998887764 345778889999999999999999998763
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.57 E-value=1e-06 Score=66.79 Aligned_cols=139 Identities=10% Similarity=0.038 Sum_probs=95.2
Q ss_pred hhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC--hhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 18 HHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP--LFAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 18 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
+|..+++...+.-.+-+...|..+...+. .|++++|..+|+... |+ ...|......+.+.|++++|..+|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67777776654323345677777887777 889999998888876 43 2478888888888888888888888876
Q ss_pred HcCCCCC-CccHHHHHHH-hhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 92 KTGLRPD-NLTYPFVVKA-SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 92 ~~~~~p~-~~t~~~li~~-~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+. .|+ ...|...... +...|+.++|..+++...+.. +-+...|..++..+.+.|+.++|..+|++
T Consensus 384 ~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 384 ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 54 232 2222111111 124677888888888776653 23567788888888888888888888765
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.56 E-value=1e-06 Score=59.31 Aligned_cols=138 Identities=14% Similarity=-0.016 Sum_probs=108.9
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a 83 (162)
.+-..|+.++|...+....+...++++..+..+-..+. .|++++|...|+... | +...|..+-..|...|++++|
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHH
Confidence 44556789999999999988776567766666777777 999999999999886 4 467788899999999999999
Q ss_pred HHHHHHHHHcCCCCCC--------ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc---hhHHHHHHHHHHhcCCh
Q 045917 84 IKLFDEMLKTGLRPDN--------LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD---KYIGNTLLRMYAACKEI 150 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~--------~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~ll~~y~~~g~~ 150 (162)
...|++..+. .|+. ..|..+-..+...|++++|...+....+. .|+ ...+..+-.+|...|+.
T Consensus 96 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 96 IATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 9999998763 3443 34566667777889999999999888765 344 56777788888887777
No 59
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=2.5e-06 Score=56.57 Aligned_cols=119 Identities=12% Similarity=-0.095 Sum_probs=94.6
Q ss_pred HHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhh
Q 045917 41 FILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVG 118 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a 118 (162)
+-..+. .|++++|...|+... |+...|..+-..|.+.|++++|...|++..+.. +.+...+..+-..+...|++++|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence 334455 899999999999887 888889999999999999999999999877643 23456677788888899999999
Q ss_pred hHHHHHHHHHhcC--------------c-chhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 119 GSVHSLIFKVGLH--------------S-DKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 119 ~~i~~~~~~~~~~--------------~-~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
...+....+.... | ....+..+-.+|.+.|++++|.+.|++.
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9998888774311 1 2367888889999999999999988753
No 60
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=4e-06 Score=58.87 Aligned_cols=150 Identities=9% Similarity=-0.059 Sum_probs=114.3
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHH-HHHcCCCchH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIR-AYAKTSCSIE 82 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~-~~~~~~~~~~ 82 (162)
..+...|+.++|...++....... -++..+..+-..+. .|++++|...++... |+......... .+...++.++
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence 344566889999999988876642 34566777777888 999999999999987 66443333332 3566788888
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcC-cchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
|...+++..+.. +.+...+..+-..+...|++++|...+..+.+.... .+...+..+...|...|+.++|...|++
T Consensus 204 a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 204 EIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999988876642 234566788889999999999999999999886432 2367899999999999999999887754
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.53 E-value=1.3e-05 Score=54.93 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=100.1
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~ 81 (162)
..++...|+.++|...+....+.. +.++..+..+-..|. .|++++|...|+... | +...|..+-..+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 344455567777777777776643 224456777777777 888888888887776 3 3455555552333445888
Q ss_pred HHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhcc---chhhhHHHHHHHHHh-cCcc------hhHHHHHHHHHHhcCCh
Q 045917 82 ESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLL---IGVGGSVHSLIFKVG-LHSD------KYIGNTLLRMYAACKEI 150 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~---~~~a~~i~~~~~~~~-~~~~------~~~~~~ll~~y~~~g~~ 150 (162)
+|...|++..+. .|+ ...+..+...+...++ .++|...+....+.. -.|+ ...|..+-..|.+.|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 888888887653 233 3455556666666777 777888887776642 1233 25677788888999999
Q ss_pred hHHHHhhccc
Q 045917 151 DFAKALFDEM 160 (162)
Q Consensus 151 ~~a~~~~~~m 160 (162)
++|.+.|++.
T Consensus 238 ~~A~~~~~~a 247 (272)
T 3u4t_A 238 VKADAAWKNI 247 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 62
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.53 E-value=1.4e-06 Score=66.72 Aligned_cols=143 Identities=9% Similarity=-0.040 Sum_probs=103.7
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
|+.++|.+.++...+.. +.+...+..+-..+. .|++++|...|++.. .+...|..+-..|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56778888887775542 234566777777888 999999999999876 457788889999999999999999999
Q ss_pred HHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc---CChhHHHHhhcc
Q 045917 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC---KEIDFAKALFDE 159 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~---g~~~~a~~~~~~ 159 (162)
+..+.. +.+...+..+-..+.+.|++++|.+.++...+.. +.+...+..+..+|... |+.++|.+.+++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 987642 2245677888899999999999999999988764 23577888999999999 999999988865
No 63
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.52 E-value=9.2e-07 Score=62.89 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHHhhchhhhcchhHHHHHhcC-CCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-----ChhHHHHHHHHHHc--
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSL-DHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-----PLFAYNTLIRAYAK-- 76 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-----~~~~~~~li~~~~~-- 76 (162)
++...|+.++|.+++......+- .-+...+..++..+. .|+.+.|.+.++.|. | +-.+..-+..++..
T Consensus 109 i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 109 AQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHH
Confidence 33344555555555554433332 123344444555555 666666666665555 3 12333333333111
Q ss_pred --CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 77 --TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 77 --~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
.++..+|..+|+++.+. .|+..+-..+++++.+.|++++|+++++.+.
T Consensus 189 ~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22566666666665332 2332223334445555566666666555443
No 64
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.45 E-value=3e-06 Score=60.25 Aligned_cols=136 Identities=10% Similarity=-0.050 Sum_probs=101.6
Q ss_pred hcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C---ChhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 19 HHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P---PLFAYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 19 a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
|...++.....+ .++..+...+-..+. .|++++|.+++.... | +...+-..+..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666555444 445555555566666 999999999999872 3 56778889999999999999999999997
Q ss_pred HcCCCC-----CCccHHHHHHHhhh--hc--cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 92 KTGLRP-----DNLTYPFVVKASDQ--CL--LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 92 ~~~~~p-----~~~t~~~li~~~~~--~~--~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+. .| +..+...+.++... .| +..+|..+|+++... .|+...-..|+.++...|++++|++.++.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64 45 36666777766333 34 799999999998654 35534445566699999999999999864
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.45 E-value=2.7e-06 Score=67.21 Aligned_cols=123 Identities=10% Similarity=0.054 Sum_probs=106.4
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-CccHHHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFVVK 107 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~ 107 (162)
++..++.|=..|. .|++++|...|++.. | +..+|+.+=..|.+.|++++|+..|++..+. .|+ ...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567888888888 999999999999876 4 5788999999999999999999999998764 354 567888999
Q ss_pred HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+.+.|++++|.+.++...+.. +-+...|..+-.+|.+.|++++|.+.|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999988764 23578899999999999999999999875
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.45 E-value=1.6e-05 Score=54.87 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=55.5
Q ss_pred CCChHHHHHHhhhhC--CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh----hccch
Q 045917 47 PISLHFTRSLFNNVM--PPLFAYNTLIRAYAK----TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ----CLLIG 116 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~ 116 (162)
.+++++|...|+... .+...+..+-..|.. .+++++|...|++..+.+ +...+..+-..+.. .++.+
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHH
Confidence 455666666665554 344455555555555 566666666665555443 34444445455554 55555
Q ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHHh----cCChhHHHHhhc
Q 045917 117 VGGSVHSLIFKVGLHSDKYIGNTLLRMYAA----CKEIDFAKALFD 158 (162)
Q Consensus 117 ~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~----~g~~~~a~~~~~ 158 (162)
+|...+....+.+ +...+..+-..|.. .+++++|...|+
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYD 174 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5555555555443 23344444445554 555555555544
No 67
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.44 E-value=3.1e-06 Score=59.49 Aligned_cols=153 Identities=8% Similarity=-0.158 Sum_probs=112.7
Q ss_pred HHHHHhhchhhhcchhHHHHHh----cCCCc-hhHHHHHHHhhC-CCChHHHHHHhhhhC---C---C----hhHHHHHH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKT----SLDHN-TYIISRFILTSL-PISLHFTRSLFNNVM---P---P----LFAYNTLI 71 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~---~----~~~~~~li 71 (162)
.++...|+.++|...+...... |-++. ..+|+.+-..|. .|++++|...|+... + + ..+|+.+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445567778887777666443 22222 467888888888 999999999988765 2 2 45788888
Q ss_pred HHHHcC-CCchHHHHHHHHHHHcCCCC-C----CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcch------hHHHH
Q 045917 72 RAYAKT-SCSIESIKLFDEMLKTGLRP-D----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK------YIGNT 139 (162)
Q Consensus 72 ~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~------~~~~~ 139 (162)
..|... |++++|+..|++..+..-.. + ..++..+-..+.+.|++++|...++...+....... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 889886 99999999999875531111 1 245777888999999999999999998875432221 15677
Q ss_pred HHHHHHhcCChhHHHHhhccc
Q 045917 140 LLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~m 160 (162)
+-.+|...|++++|...|++-
T Consensus 205 lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 788899999999999998764
No 68
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.43 E-value=2.9e-06 Score=55.02 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=108.3
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHH--HHcCCCc
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRA--YAKTSCS 80 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~--~~~~~~~ 80 (162)
...+...|+.++|...++...+.. +-++..+..+-..+. .|++++|...|+... |+.. +..+... +...++.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHHHHHHHHhhccc
Confidence 344556688899988888775543 234566777777888 999999999999987 6333 3322221 1222334
Q ss_pred hHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc-chhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 81 IESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS-DKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.+|...+++..+. .|+ ...+..+-..+...|++++|...+..+.+....+ +...+..+...|...|+.++|...|+
T Consensus 91 ~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp CHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 4578888887653 354 5667888889999999999999999988764322 35688999999999999999998886
Q ss_pred c
Q 045917 159 E 159 (162)
Q Consensus 159 ~ 159 (162)
+
T Consensus 169 ~ 169 (176)
T 2r5s_A 169 R 169 (176)
T ss_dssp H
T ss_pred H
Confidence 5
No 69
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.43 E-value=6.2e-06 Score=49.37 Aligned_cols=110 Identities=9% Similarity=-0.059 Sum_probs=79.4
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
...+..+-..+. .|++++|...|++.. .+...|..+...+...|++++|...|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 455666667777 888999988888875 356778888888888899999999888887642 23455677788888
Q ss_pred hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 110 DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 110 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
...|++++|...+..+.+.. +.+...+..+-..+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 88888888888888877653 2234445554444443
No 70
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.43 E-value=1e-05 Score=59.29 Aligned_cols=146 Identities=8% Similarity=-0.007 Sum_probs=118.1
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCC-hHHHHHHhhhhC----CChhHHHHHHHHHHcCCC
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PIS-LHFTRSLFNNVM----PPLFAYNTLIRAYAKTSC 79 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~-~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~ 79 (162)
+..++...|+.++|...++...+.. +-+...|+.+-..+. .|+ +++|...|+... .+...|+.+=..+.+.|+
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence 3445566678999999999887654 235667777777888 886 999999999887 467889999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh-cCChhHHH
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA-CKEIDFAK 154 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~-~g~~~~a~ 154 (162)
+++|+..|++..+.. +-+...|..+-..+.+.|++++|...++.+.+... -+...|+.+-.+|.+ .|..++|.
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHH
Confidence 999999999997742 22556788888889999999999999999988753 468889999999999 77767773
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.42 E-value=4.7e-06 Score=65.40 Aligned_cols=146 Identities=10% Similarity=-0.110 Sum_probs=117.4
Q ss_pred hhchhhhcchhHHHHH------hcC-CCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCc
Q 045917 13 SKTAHHHHQLPALFLK------TSL-DHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~------~~~-~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~ 80 (162)
.|+.++|.+.++.... ... +.+...+..+-..+. .|++++|...|+... | +...|..+=..|...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 4677888888887761 122 335566777777788 999999999999887 4 577888888899999999
Q ss_pred hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
++|.+.|++..+.. +-+...+..+-..+.+.|++++ ...++...+.. +-+...|..+-.+|.+.|++++|.+.|++.
T Consensus 484 ~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 484 DSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999987642 1245667888899999999999 99999988764 345778999999999999999999999875
Q ss_pred C
Q 045917 161 P 161 (162)
Q Consensus 161 ~ 161 (162)
.
T Consensus 561 l 561 (681)
T 2pzi_A 561 P 561 (681)
T ss_dssp C
T ss_pred c
Confidence 3
No 72
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.41 E-value=3.8e-06 Score=50.36 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~ 143 (162)
...|..+...+...|++++|.+.|++..+.. +.+..++..+...+.+.|++++|...+..+.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4577888889999999999999999987653 2355677888899999999999999999988764 3467888999999
Q ss_pred HHhcCChhHHHHhhccc
Q 045917 144 YAACKEIDFAKALFDEM 160 (162)
Q Consensus 144 y~~~g~~~~a~~~~~~m 160 (162)
|...|++++|.+.|++.
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 99999999999998764
No 73
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.39 E-value=4.4e-06 Score=63.34 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=115.3
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCc--hhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHH-HHHHc
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHN--TYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLI-RAYAK 76 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li-~~~~~ 76 (162)
.+..+....|+.++|..+++...+. .|+ ...|......+. .|+++.|..+|+... |+ ...|-... ..+..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4556667778999999999998874 443 247888888888 899999999999886 32 22222211 12336
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc-Ccc--hhHHHHHHHHHHhcCChhHH
Q 045917 77 TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-HSD--KYIGNTLLRMYAACKEIDFA 153 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-~~~--~~~~~~ll~~y~~~g~~~~a 153 (162)
.|+.++|..+|+...+.. +-+...|..+++...+.|+.+.|..+++.....+. .|+ ..+|...+....+.|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999876542 23467788899999999999999999999887632 232 44788889988899999999
Q ss_pred HHhhccc
Q 045917 154 KALFDEM 160 (162)
Q Consensus 154 ~~~~~~m 160 (162)
.+++.++
T Consensus 483 ~~~~~r~ 489 (530)
T 2ooe_A 483 LKVEKRR 489 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 74
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=2.2e-06 Score=56.23 Aligned_cols=146 Identities=9% Similarity=-0.120 Sum_probs=103.1
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----------CChhHHHHHHHHHHcCCCch
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----------PPLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----------~~~~~~~~li~~~~~~~~~~ 81 (162)
.|++++|++.++.+.. ........+..+-..+. .|++++|...+++.. .....+..+-..|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4677788875544432 22234566777777777 999999999988764 23556777888889999999
Q ss_pred HHHHHHHHHHHc-CCCC-C----CccHHHHHHHhhhhccchhhhHHHHHHHHHhc-Ccc----hhHHHHHHHHHHhcCCh
Q 045917 82 ESIKLFDEMLKT-GLRP-D----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-HSD----KYIGNTLLRMYAACKEI 150 (162)
Q Consensus 82 ~a~~~~~~m~~~-~~~p-~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-~~~----~~~~~~ll~~y~~~g~~ 150 (162)
+|.+.+++..+. .-.+ + ...+..+-..+...|++++|...+....+..- ..+ ..++..+-..|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999986543 1112 1 23466677888889999999999888764321 111 23457788899999999
Q ss_pred hHHHHhhcc
Q 045917 151 DFAKALFDE 159 (162)
Q Consensus 151 ~~a~~~~~~ 159 (162)
++|.+.+++
T Consensus 164 ~~A~~~~~~ 172 (203)
T 3gw4_A 164 LEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 75
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.37 E-value=2.8e-05 Score=53.60 Aligned_cols=138 Identities=10% Similarity=-0.065 Sum_probs=80.8
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHHHHHHh----hC-CCChHHHHHHhhhhC--CChhHHHHHHHHHHc----CCCch
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILT----SL-PISLHFTRSLFNNVM--PPLFAYNTLIRAYAK----TSCSI 81 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~-~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~----~~~~~ 81 (162)
.++.++|...+....+.+ ++..+..+-.. .. .++.++|...|+... .+...+..+-..|.. .++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHH
Confidence 455666666666665554 23333222222 22 566777777776665 455566666666666 67777
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhh----hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh----cCChhHH
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQ----CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA----CKEIDFA 153 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~----~g~~~~a 153 (162)
+|...|++..+.+ +...+..+-..+.. .++.++|...++...+.+ +...+..+-..|.. .+++++|
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 7777777766554 33444555555555 566667766666665543 34555556666666 6677766
Q ss_pred HHhhcc
Q 045917 154 KALFDE 159 (162)
Q Consensus 154 ~~~~~~ 159 (162)
...|++
T Consensus 206 ~~~~~~ 211 (273)
T 1ouv_A 206 LARYSK 211 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.36 E-value=1.4e-05 Score=53.70 Aligned_cols=125 Identities=8% Similarity=-0.113 Sum_probs=99.9
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHH
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFV 105 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~l 105 (162)
.++..+..+=..+. .|++++|...|+... ++...+..+-..+...|++++|...|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 35566666666777 999999999999875 35666777888899999999999999998764 34 45567788
Q ss_pred HHHhhhhccchhhhHHHHHHHHHhcCcch-------hHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDK-------YIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~~~~~~~-------~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
-..+...|++++|...+....+... .+. ..|..+=..|.+.|++++|.+.|++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 8899999999999999999887642 234 45777777888999999999998764
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=9.8e-06 Score=51.27 Aligned_cols=121 Identities=11% Similarity=-0.032 Sum_probs=85.9
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.+..+-..+. .|++++|...|+... .+...|..+-..+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3445555666 888888888888765 357777888888888888999988888876642 2345567777778888
Q ss_pred hccchhhhHHHHHHHHHhcCcchhHH--HHHHHHHHhcCChhHHHHhhcc
Q 045917 112 CLLIGVGGSVHSLIFKVGLHSDKYIG--NTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~~~~~~~~~~--~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|++++|...+....+... .+...+ -.+...+.+.|++++|.+.+.+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888888888888776532 233444 3344447778888888877654
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.31 E-value=2.5e-05 Score=53.59 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=109.7
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCC--chhHHHHHHHhhC-CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHc--
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDH--NTYIISRFILTSL-PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAK-- 76 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~-- 76 (162)
.+-..|+.++|...+..+.+..... .+..+..+-..|. .|++++|...|+... |+ ...+..+-.++..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 3445578999999999987764221 1455666666777 999999999999886 53 3345556666777
Q ss_pred ------CCCchHHHHHHHHHHHcCCCCCC-ccH-----------------HHHHHHhhhhccchhhhHHHHHHHHHhcC-
Q 045917 77 ------TSCSIESIKLFDEMLKTGLRPDN-LTY-----------------PFVVKASDQCLLIGVGGSVHSLIFKVGLH- 131 (162)
Q Consensus 77 ------~~~~~~a~~~~~~m~~~~~~p~~-~t~-----------------~~li~~~~~~~~~~~a~~i~~~~~~~~~~- 131 (162)
.|++++|...|++..+.. |+. ... ..+-..+.+.|++++|...++.+.+....
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 181 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT 181 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred ccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 899999999999987642 433 333 34467788899999999999998876321
Q ss_pred -cchhHHHHHHHHHHhc----------CChhHHHHhhccc
Q 045917 132 -SDKYIGNTLLRMYAAC----------KEIDFAKALFDEM 160 (162)
Q Consensus 132 -~~~~~~~~ll~~y~~~----------g~~~~a~~~~~~m 160 (162)
.....+..+-.+|.+. |++++|...|++.
T Consensus 182 ~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 182 PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 1345677777888866 8889999988753
No 79
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.31 E-value=1.6e-05 Score=47.93 Aligned_cols=115 Identities=6% Similarity=-0.049 Sum_probs=90.7
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 108 (162)
+...+..+-..+. .|++++|...|+... .+...|..+-..+...|++++|...+++..+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455666666777 999999999999876 467788888889999999999999999987642 2245567778888
Q ss_pred hhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 109 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
+...|++++|...+....+.. +.+...+..+-.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999888764 23567777888888887765
No 80
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=1.8e-05 Score=48.01 Aligned_cols=114 Identities=11% Similarity=-0.047 Sum_probs=86.6
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
.++..+..+-..+. .|++++|...|+... .+...|..+-..+...|++++|...+++..+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34556667777777 999999999998875 367788888888889999999999999887642 224566777888
Q ss_pred HhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcC
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g 148 (162)
.+.+.|++++|...+....+.. +.+...+..+-.+|.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8889999999999998887753 234566666766776655
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.28 E-value=6.5e-05 Score=50.55 Aligned_cols=151 Identities=5% Similarity=-0.101 Sum_probs=107.1
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCC-C-chhHHHHHHHhhC-CCChHHHHHHhhhhC---CChh----HHHHHHHHHH--
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLD-H-NTYIISRFILTSL-PISLHFTRSLFNNVM---PPLF----AYNTLIRAYA-- 75 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~----~~~~li~~~~-- 75 (162)
..+-..|+.++|...++.+.+.... | .+..+..+-..|. .|++++|...|+... |+.. .+-.+-..+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 3455568999999999999875432 2 2345666777788 999999999999986 5432 2222222222
Q ss_pred ----------------cCCCchHHHHHHHHHHHcCCCCCCccH------------------HHHHHHhhhhccchhhhHH
Q 045917 76 ----------------KTSCSIESIKLFDEMLKTGLRPDNLTY------------------PFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 76 ----------------~~~~~~~a~~~~~~m~~~~~~p~~~t~------------------~~li~~~~~~~~~~~a~~i 121 (162)
..|+.++|...|++..+. .|+.... -.+-..+.+.|++++|...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 169 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNR 169 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 357899999999998763 3554322 1334567788999999999
Q ss_pred HHHHHHHhcC-c-chhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 122 HSLIFKVGLH-S-DKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 122 ~~~~~~~~~~-~-~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
++.+.+.-.. | ....+..+..+|.+.|+.++|.+.++.+
T Consensus 170 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 170 VEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9998876321 1 1356888999999999999999998754
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.27 E-value=1.6e-05 Score=57.61 Aligned_cols=149 Identities=7% Similarity=-0.083 Sum_probs=111.2
Q ss_pred HHhhchhhhcchhHHHHHhc-CCC----chhHHHHHHHhhC-CCChHHHHHHhhhhC------CC-----hhHHHHHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTS-LDH----NTYIISRFILTSL-PISLHFTRSLFNNVM------PP-----LFAYNTLIRA 73 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~-~~~----~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~-----~~~~~~li~~ 73 (162)
...|+.++|...+....+.- -.+ ...++..+-..|. .|+++.|...++... ++ ..+++.+=..
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 34478889999888876531 112 2355666777777 999999999888765 22 3467778888
Q ss_pred HHcCCCchHHHHHHHHHHHcCCC-CC----CccHHHHHHHhhhhccchhhhHHHHHHHHH----hc-CcchhHHHHHHHH
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLR-PD----NLTYPFVVKASDQCLLIGVGGSVHSLIFKV----GL-HSDKYIGNTLLRM 143 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~-p~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~----~~-~~~~~~~~~ll~~ 143 (162)
|...|++++|.+.|++..+..-. ++ ..++..+-..+...|++++|...+....+. +. +....++..+-..
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 99999999999999987543111 11 136777888899999999999999887662 22 3346678889999
Q ss_pred HHhcCChhHHHHhhcc
Q 045917 144 YAACKEIDFAKALFDE 159 (162)
Q Consensus 144 y~~~g~~~~a~~~~~~ 159 (162)
|.+.|++++|...+++
T Consensus 274 ~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 9999999999998865
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.25 E-value=4.4e-05 Score=50.43 Aligned_cols=117 Identities=12% Similarity=-0.107 Sum_probs=95.2
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a 83 (162)
.+...|+.++|...+... +.|++..+..+-..|. .|++++|...|+... .+...|..+-..|...|++++|
T Consensus 15 ~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHH
Confidence 344557888888887765 4668888888888999 999999999999876 4577888999999999999999
Q ss_pred HHHHHHHHHcCCCCCC----------------ccHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 84 IKLFDEMLKTGLRPDN----------------LTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~----------------~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
...|++..+..- .+. ..+..+-..+.+.|++++|...+....+...
T Consensus 91 ~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 91 IKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999876421 122 5677788889999999999999999887643
No 84
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.22 E-value=1.2e-05 Score=56.29 Aligned_cols=151 Identities=8% Similarity=-0.120 Sum_probs=104.7
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCc---hhHHHHHHHhhC-CCChHHHHHHhhhhC------C----ChhHHHHHHHHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHN---TYIISRFILTSL-PISLHFTRSLFNNVM------P----PLFAYNTLIRAY 74 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~----~~~~~~~li~~~ 74 (162)
.+...|++++|...++...+...... ...+..+-..+. .|++++|...++... + ....+..+-..+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 33455788899999988877642211 355667777777 999999999888753 1 255677788888
Q ss_pred HcCCCchHHHHHHHHHHHcCC-CCC----CccHHHHHHHhhhhcc--------------------chhhhHHHHHHHHH-
Q 045917 75 AKTSCSIESIKLFDEMLKTGL-RPD----NLTYPFVVKASDQCLL--------------------IGVGGSVHSLIFKV- 128 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~~~--------------------~~~a~~i~~~~~~~- 128 (162)
...|++++|...+++..+..- .++ ..++..+...+...|+ +++|...+......
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988654311 112 2366677778888888 88888877665432
Q ss_pred ---hcC-cchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 129 ---GLH-SDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 129 ---~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+-. .....+..+-..|...|++++|.+.+++
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 111 1234677777888888888888888765
No 85
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.22 E-value=5.4e-06 Score=59.88 Aligned_cols=144 Identities=11% Similarity=-0.064 Sum_probs=105.6
Q ss_pred hhhhcchhHHHHHh----cCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHHHHHHHcCCC
Q 045917 16 AHHHHQLPALFLKT----SLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTLIRAYAKTSC 79 (162)
Q Consensus 16 ~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~li~~~~~~~~ 79 (162)
+++|...+...... +..+ ...++..+-..|. .|++++|...+++.. ++ ..+|..+-..|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 77777777665432 2122 2345666777777 999999999998875 22 3478888889999999
Q ss_pred chHHHHHHHHHHHcCCC-CC----CccHHHHHHHhhhhccchhhhHHHHHHHHHhc-Ccc----hhHHHHHHHHHHhcCC
Q 045917 80 SIESIKLFDEMLKTGLR-PD----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-HSD----KYIGNTLLRMYAACKE 149 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~-p~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-~~~----~~~~~~ll~~y~~~g~ 149 (162)
+++|...+++..+..-. ++ ..++..+...+...|++++|...+....+... .++ ..++..+-..|.+.|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987543111 11 44667788889999999999999988765321 111 5577888899999999
Q ss_pred hhHHHHhhcc
Q 045917 150 IDFAKALFDE 159 (162)
Q Consensus 150 ~~~a~~~~~~ 159 (162)
+++|.+.|++
T Consensus 323 ~~~A~~~~~~ 332 (406)
T 3sf4_A 323 HDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 86
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.22 E-value=1.8e-05 Score=58.04 Aligned_cols=124 Identities=6% Similarity=-0.102 Sum_probs=104.4
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCC-chHHHHHHHHHHHcCCCCCCccHHHHHHH
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSC-SIESIKLFDEMLKTGLRPDNLTYPFVVKA 108 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 108 (162)
...|..+-..+. .|++++|...|+... | +...|+.+-..+...|+ +++|+..|++..+..- -+...|..+-..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 345666666777 999999999999886 4 57889999999999997 9999999999877422 255678888889
Q ss_pred hhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 109 SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 109 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+...|++++|...++.+.+.. +-+...|..+-.+|.+.|++++|...|++.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999999999998875 346888999999999999999999998764
No 87
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.20 E-value=5.2e-06 Score=60.40 Aligned_cols=150 Identities=8% Similarity=-0.084 Sum_probs=103.2
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCch----hHHHHHHHhhC-CCChHHHHHHhhhhC----------CChhHHHHHHHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNT----YIISRFILTSL-PISLHFTRSLFNNVM----------PPLFAYNTLIRA 73 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~-~~~~~~a~~~~~~m~----------~~~~~~~~li~~ 73 (162)
.+...|+.++|...++...+.+.. ++ ..+..+-..|. .|++++|...|++.. .....+..+-..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 334557888898888888776432 22 35666667777 899999988888664 234567778888
Q ss_pred HHcCCCchHHHHHHHHHHHc----C-CCCCCccHHHHHHHhhhhcc-----------------chhhhHHHHHHHHH---
Q 045917 74 YAKTSCSIESIKLFDEMLKT----G-LRPDNLTYPFVVKASDQCLL-----------------IGVGGSVHSLIFKV--- 128 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~----~-~~p~~~t~~~li~~~~~~~~-----------------~~~a~~i~~~~~~~--- 128 (162)
|...|++++|...|++..+. + -.....++..+-..+...|+ +++|...+....+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88889999999998886543 1 11123356667777888888 88888777665442
Q ss_pred -hc-CcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 129 -GL-HSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 129 -~~-~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+- ......+..+-..|...|++++|.+.|++
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11 11234667777788888888888887765
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.19 E-value=4.9e-06 Score=58.25 Aligned_cols=145 Identities=11% Similarity=-0.077 Sum_probs=105.2
Q ss_pred hhhhcchhHHHHHh----cCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHHHHHHHcCCC
Q 045917 16 AHHHHQLPALFLKT----SLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTLIRAYAKTSC 79 (162)
Q Consensus 16 ~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~li~~~~~~~~ 79 (162)
.++|.+.+...... +..+ ....+..+-..+. .|++++|...+++.. ++ ..++..+-..+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 77777776665332 2222 2345666777777 999999999998875 22 3378888889999999
Q ss_pred chHHHHHHHHHHHcCC-CCC----CccHHHHHHHhhhhccchhhhHHHHHHHHHhc-----CcchhHHHHHHHHHHhcCC
Q 045917 80 SIESIKLFDEMLKTGL-RPD----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-----HSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-----~~~~~~~~~ll~~y~~~g~ 149 (162)
+++|...+++..+..- .++ ..++..+...+...|++++|...+....+... .....++..+-..|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999998754311 111 44567778888999999999999888755321 1114477889999999999
Q ss_pred hhHHHHhhccc
Q 045917 150 IDFAKALFDEM 160 (162)
Q Consensus 150 ~~~a~~~~~~m 160 (162)
+++|.+.|++.
T Consensus 319 ~~~A~~~~~~a 329 (338)
T 3ro2_A 319 HDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99999998753
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.19 E-value=5.5e-05 Score=53.03 Aligned_cols=152 Identities=5% Similarity=-0.104 Sum_probs=106.8
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCC---C--chhHHHHHHHhhC-C-CChHHHHHHhhhhC---CC-------hhHHHHH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLD---H--NTYIISRFILTSL-P-ISLHFTRSLFNNVM---PP-------LFAYNTL 70 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~-~-~~~~~a~~~~~~m~---~~-------~~~~~~l 70 (162)
.++...|+.++|...++........ + ...+++.+-..|. . |++++|...|++.. |+ ..+|+.+
T Consensus 85 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 164 (292)
T 1qqe_A 85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3445557888888877776543211 1 1346777777787 7 99999999999875 21 3568888
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCCc------cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc------hhHHH
Q 045917 71 IRAYAKTSCSIESIKLFDEMLKTGLRPDNL------TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD------KYIGN 138 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~ 138 (162)
-..+.+.|++++|...|++..+........ .|..+...+...|+.++|...++...+. .|+ ...+.
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHH
Confidence 899999999999999999988754433322 3566667788899999999998876542 222 12345
Q ss_pred HHHHHHH--hcCChhHHHHhhcccC
Q 045917 139 TLLRMYA--ACKEIDFAKALFDEMP 161 (162)
Q Consensus 139 ~ll~~y~--~~g~~~~a~~~~~~m~ 161 (162)
.+...|. ..+++++|.+.|+++.
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCC
Confidence 5666665 4678999999998764
No 90
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.17 E-value=8.8e-06 Score=52.52 Aligned_cols=115 Identities=8% Similarity=0.010 Sum_probs=85.2
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHH-HHcCCCc--hHHH
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRA-YAKTSCS--IESI 84 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~-~~~~~~~--~~a~ 84 (162)
.|+.++|...+....+.. +.++..+..+-..|. .|++++|...|+... | +...|..+-.. +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 356778888887776654 345667777777888 999999999999876 4 56667777777 6788998 9999
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
..|++..+.. +.+...+..+...+...|++++|...+....+..
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999987642 1234566777788889999999999998887753
No 91
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.15 E-value=1.5e-05 Score=57.18 Aligned_cols=124 Identities=9% Similarity=-0.022 Sum_probs=100.6
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---CC----------------hhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---PP----------------LFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
...+..+=..|. .|++++|...|+... |+ ...|..+-..|.+.|++++|...|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445666666777 999999999999876 54 3789999999999999999999999987753
Q ss_pred CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHH-Hhhccc
Q 045917 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK-ALFDEM 160 (162)
Q Consensus 95 ~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~-~~~~~m 160 (162)
+.+...+..+-.++...|++++|...+....+.. +-+...+..+-.+|.+.|+.++|. ..|.+|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356677888899999999999999999988864 345778888999999999999884 345443
No 92
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.14 E-value=1.2e-05 Score=58.55 Aligned_cols=144 Identities=7% Similarity=-0.119 Sum_probs=106.2
Q ss_pred hhhhcchhHHHHHh----cCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHHHHHHHcCCC
Q 045917 16 AHHHHQLPALFLKT----SLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTLIRAYAKTSC 79 (162)
Q Consensus 16 ~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~li~~~~~~~~ 79 (162)
+++|.+.+...... +-.+ ...++..+-..|. .|++++|...|++.. ++ ...+..+-..|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 77777777665432 2222 2346667777777 999999999999875 22 3378889999999999
Q ss_pred chHHHHHHHHHHHcCCC-C----CCccHHHHHHHhhhhccchhhhHHHHHHHHHhc-----CcchhHHHHHHHHHHhcCC
Q 045917 80 SIESIKLFDEMLKTGLR-P----DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-----HSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~-p----~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-----~~~~~~~~~ll~~y~~~g~ 149 (162)
+++|...|++..+..-. . ...++..+...+...|++++|...+.......- .....++..+-..|.+.|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 99999999987543111 1 145677788889999999999999988765321 1124577888999999999
Q ss_pred hhHHHHhhcc
Q 045917 150 IDFAKALFDE 159 (162)
Q Consensus 150 ~~~a~~~~~~ 159 (162)
+++|.+.|++
T Consensus 359 ~~~A~~~~~~ 368 (411)
T 4a1s_A 359 HERALKYAEQ 368 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 93
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.14 E-value=5.6e-05 Score=48.09 Aligned_cols=92 Identities=9% Similarity=-0.024 Sum_probs=73.3
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.+..+=..+. .|++++|...|+... | +...|..+=.+|...|++++|...|++..+.. +-+...|..+-.++.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 3444445556 999999999999886 4 57788888889999999999999999987643 2246677888888999
Q ss_pred hccchhhhHHHHHHHHHh
Q 045917 112 CLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~~ 129 (162)
.|++++|...++...+..
T Consensus 117 lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQHS 134 (151)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999998888764
No 94
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.13 E-value=6.2e-05 Score=52.66 Aligned_cols=118 Identities=8% Similarity=-0.077 Sum_probs=88.0
Q ss_pred HHhhC-CCChHHHHHHhhhhC------CCh----hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc-----cHHHH
Q 045917 42 ILTSL-PISLHFTRSLFNNVM------PPL----FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL-----TYPFV 105 (162)
Q Consensus 42 l~~~~-~~~~~~a~~~~~~m~------~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----t~~~l 105 (162)
+..+. .|++++|...++... |+. ..+..+-..+...|++++|...|++..+.....+.. +++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45666 999999999999865 221 123345566667789999999999998744333322 57888
Q ss_pred HHHhhhhccchhhhHHHHHHHHH-----hcCcc-hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKV-----GLHSD-KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~-----~~~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
-..+...|++++|...+....+. +..+. ..++..+-..|.+.|++++|...+++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88999999999999999888742 11122 34778899999999999999998764
No 95
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=9.8e-06 Score=51.25 Aligned_cols=110 Identities=6% Similarity=-0.152 Sum_probs=81.1
Q ss_pred hhhcchhHHHHHhcCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 17 HHHHQLPALFLKTSLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 17 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
..+.+.++..... .| +...+..+-..+. .|++++|...|+... .+...|..+=..|...|++++|...|++.
T Consensus 4 ~~~~~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 4 GSGGGTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp --CCCSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344455554332 23 3344455555666 999999999999876 46778888888999999999999999998
Q ss_pred HHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 91 LKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 91 ~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
.... +-+...+..+-.++...|++++|...+....+..
T Consensus 82 l~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 82 AVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7642 2345667778889999999999999999887754
No 96
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=3.9e-05 Score=46.46 Aligned_cols=96 Identities=9% Similarity=-0.029 Sum_probs=80.4
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLL 141 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll 141 (162)
.+...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 346678888889999999999999999987642 2256677888888999999999999999988764 34678888999
Q ss_pred HHHHhcCChhHHHHhhcc
Q 045917 142 RMYAACKEIDFAKALFDE 159 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~ 159 (162)
.+|.+.|++++|.+.|++
T Consensus 92 ~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 999999999999999875
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.12 E-value=3.1e-05 Score=49.33 Aligned_cols=95 Identities=9% Similarity=-0.116 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
+...+..+=..+.+.|++++|...|++..+.. +-+...|..+-.++...|++++|...++...+.. +-+...|..+-.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 35566677778889999999999999987642 2356667888899999999999999999998875 345888999999
Q ss_pred HHHhcCChhHHHHhhcc
Q 045917 143 MYAACKEIDFAKALFDE 159 (162)
Q Consensus 143 ~y~~~g~~~~a~~~~~~ 159 (162)
+|.+.|++++|.+.|++
T Consensus 113 ~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999999875
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.10 E-value=5.6e-05 Score=52.89 Aligned_cols=150 Identities=10% Similarity=-0.063 Sum_probs=107.5
Q ss_pred HHHhhchhhhcchhHHHHHhc-CCCchh----HHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHHHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTS-LDHNTY----IISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTLIRA 73 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~li~~ 73 (162)
+...|+.++|..+++...... ..|+.. .+..+-..+. .+++++|...|+..- ++ ..+|+.+-..
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 344578888999988887643 233322 2334555666 889999999998764 33 2368889999
Q ss_pred HHcCCCchHHHHHHHHHHHc-----CCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHh----cCcc-hhHHHHHHH
Q 045917 74 YAKTSCSIESIKLFDEMLKT-----GLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVG----LHSD-KYIGNTLLR 142 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~-----~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~----~~~~-~~~~~~ll~ 142 (162)
|...|++++|...|++..+. +..+. ..++..+-..+.+.|++++|...+....+.. ..+. ..+|..+=.
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999999998641 11121 2367778889999999999999988776532 1122 567788888
Q ss_pred HHHhcCC-hhHHHHhhcc
Q 045917 143 MYAACKE-IDFAKALFDE 159 (162)
Q Consensus 143 ~y~~~g~-~~~a~~~~~~ 159 (162)
+|.+.|+ .++|.+.|++
T Consensus 245 ~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHTTCCHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHH
Confidence 9999995 6888887764
No 99
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=4.8e-05 Score=44.90 Aligned_cols=91 Identities=11% Similarity=-0.064 Sum_probs=50.1
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.+..+-..+. .|++++|...|+... | +...|..+-..+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444555 666666666666554 2 44555555556666666666666666654431 1133444555555666
Q ss_pred hccchhhhHHHHHHHHH
Q 045917 112 CLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~ 128 (162)
.|++++|...+....+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 66666666666555543
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.09 E-value=1.7e-05 Score=50.19 Aligned_cols=131 Identities=5% Similarity=-0.121 Sum_probs=90.9
Q ss_pred hchhhhcchhHHHHHhcCCC-chhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDH-NTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
|+++.|...+..... ..| ++..+-.+=..|. .|++++|...|+... | +..+|..+=..|.+.|++++|...|
T Consensus 11 ~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 455666555554422 222 2333445556677 999999999999876 4 6788999999999999999999999
Q ss_pred HHHHHcCCCCC-CccHHHHHHHhhhhccchhhhHH-HHHHHHHhcCcchhHHHHHHHHHHhcCC
Q 045917 88 DEMLKTGLRPD-NLTYPFVVKASDQCLLIGVGGSV-HSLIFKVGLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 88 ~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~i-~~~~~~~~~~~~~~~~~~ll~~y~~~g~ 149 (162)
++..+. .|+ ...+..+-..+.+.|+.+++... ++...+.. +-++.+|...-..+.+.|+
T Consensus 89 ~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 998763 354 45677788888899998876655 46666543 2346667666666666664
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.08 E-value=2e-05 Score=55.74 Aligned_cols=151 Identities=4% Similarity=-0.151 Sum_probs=105.6
Q ss_pred HHHHHhhchhhhcchhHHHHHhc--CC--C-chhHHHHHHHhhC-CCChHHHHHHhhhhC--------C--ChhHHHHHH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTS--LD--H-NTYIISRFILTSL-PISLHFTRSLFNNVM--------P--PLFAYNTLI 71 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~--~~--~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--------~--~~~~~~~li 71 (162)
.++...|+.++|...+....... .. + ...+++.+-..|. .|++++|...|+... + -..+++.+-
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555677888887777664432 11 1 1346777777888 899999988888653 1 135677777
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCC-----CCccHHHHHHHhhhhccchhhhHHHHHHHHHhc----Ccc-hhHHHHHH
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGLRP-----DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL----HSD-KYIGNTLL 141 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~----~~~-~~~~~~ll 141 (162)
..|.. |++++|+..|++..+..-.. ...++..+-..+.+.|++++|...++...+... .+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 78877 99999999998865421111 134577778889999999999999988766321 111 23566677
Q ss_pred HHHHhcCChhHHHHhhcc
Q 045917 142 RMYAACKEIDFAKALFDE 159 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~ 159 (162)
.+|...|++++|.+.|++
T Consensus 203 ~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 788888999999998875
No 102
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.08 E-value=5.8e-05 Score=59.27 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=99.5
Q ss_pred HHHHHHhhchhhhc-chhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--------------C--------
Q 045917 7 ETLIQLSKTAHHHH-QLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--------------P-------- 62 (162)
Q Consensus 7 ~~~l~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--------------~-------- 62 (162)
+..+...|+.++|. .++...... ++.+...|-......- .|+++.|..+|+... |
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 33444456666775 777777643 3445555666666666 888888888888764 1
Q ss_pred ----ChhHHHHHHHHHHcCCCchHHHHHHHHHHHc-C-CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhH
Q 045917 63 ----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-G-LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136 (162)
Q Consensus 63 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 136 (162)
....|-..+....+.|+.+.|..+|....+. + ..+......+.++..+ .++.+.|.++|+...+. ++-+...
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~ 506 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHH
Confidence 1235777777777788889999999888765 2 2222222233333322 34588888888887776 4445667
Q ss_pred HHHHHHHHHhcCChhHHHHhhcc
Q 045917 137 GNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 137 ~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
|...++.....|+.+.|..+|+.
T Consensus 507 w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 77888888888888888888875
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.07 E-value=0.00012 Score=50.20 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=92.2
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCC-CccHHH
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPD-NLTYPF 104 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~t~~~ 104 (162)
+..+-.+-..+. .|++++|...|+... |+ ...+..+-..|.+.|++++|...|++..+..- .|+ ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 333444444555 999999999999987 54 46677788889999999999999999877421 111 234555
Q ss_pred HHHHhhh--------hccchhhhHHHHHHHHHhcCcchhHH-----------------HHHHHHHHhcCChhHHHHhhcc
Q 045917 105 VVKASDQ--------CLLIGVGGSVHSLIFKVGLHSDKYIG-----------------NTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 105 li~~~~~--------~~~~~~a~~i~~~~~~~~~~~~~~~~-----------------~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+-.++.. .|++++|...+..+.+... -+.... ..+-..|.+.|++++|...|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666767 8999999999999887632 233444 4557789999999999999876
Q ss_pred c
Q 045917 160 M 160 (162)
Q Consensus 160 m 160 (162)
.
T Consensus 174 ~ 174 (261)
T 3qky_A 174 V 174 (261)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.07 E-value=0.00012 Score=51.27 Aligned_cols=148 Identities=11% Similarity=-0.041 Sum_probs=102.8
Q ss_pred HHhhchhhhcchhHHHHHhcCCC-ch----hHHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHHHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDH-NT----YIISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTLIRAY 74 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~li~~~ 74 (162)
...|+.++|.+.+....+..... +. ..+..+-..+. .|++++|...++..- .+ ..+|+.+-..|
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 34467777877777665543221 11 11223334445 889999999887652 11 44788888999
Q ss_pred HcCCCchHHHHHHHHHHHc-CCCCC-----CccHHHHHHHhhhhccchhhhHHHHHHHHHhc----Cc-chhHHHHHHHH
Q 045917 75 AKTSCSIESIKLFDEMLKT-GLRPD-----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL----HS-DKYIGNTLLRM 143 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~-~~~p~-----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~----~~-~~~~~~~ll~~ 143 (162)
...|++++|...|++..+. ...|+ ..++..+-..|.+.|++++|...+....+... .. -..+|..+-.+
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999997632 11222 14778888899999999999999988765421 11 15677888889
Q ss_pred HHhcCChhHH-HHhhc
Q 045917 144 YAACKEIDFA-KALFD 158 (162)
Q Consensus 144 y~~~g~~~~a-~~~~~ 158 (162)
|.+.|+.++| ...++
T Consensus 246 y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 246 LRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHH
Confidence 9999999999 66554
No 105
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.05 E-value=5.7e-05 Score=45.38 Aligned_cols=95 Identities=5% Similarity=-0.107 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
+...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45567778888899999999999999987642 2355667788888999999999999999988764 345778888999
Q ss_pred HHHhcCChhHHHHhhcc
Q 045917 143 MYAACKEIDFAKALFDE 159 (162)
Q Consensus 143 ~y~~~g~~~~a~~~~~~ 159 (162)
+|.+.|++++|.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 99999999999999875
No 106
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.05 E-value=0.0002 Score=51.46 Aligned_cols=150 Identities=9% Similarity=-0.041 Sum_probs=105.9
Q ss_pred HHHhhchhhhcchhHHHHHhcCCCchh----HHHHHHHhhC-CCChHHHHHHhhhhC------CCh----hHHHHHHHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTSLDHNTY----IISRFILTSL-PISLHFTRSLFNNVM------PPL----FAYNTLIRAY 74 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~-~~~~~~a~~~~~~m~------~~~----~~~~~li~~~ 74 (162)
....|+.++|...+..........++. .++.+-..+. .|++++|...+++.. .+. .+++.+-..+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344578889999888876654222222 3444455666 999999999998765 222 3356667778
Q ss_pred HcCCCchHHHHHHHHHHHc----CCC--CC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcC--c--chhHHHHHHHH
Q 045917 75 AKTSCSIESIKLFDEMLKT----GLR--PD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH--S--DKYIGNTLLRM 143 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~----~~~--p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~--~--~~~~~~~ll~~ 143 (162)
...|++++|.+.+++..+. +.. |. ...+..+-..+...|++++|...+.......-. + ....+..+-..
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 8899999999999987543 222 21 234455677888999999999999887764321 1 23467778889
Q ss_pred HHhcCChhHHHHhhcc
Q 045917 144 YAACKEIDFAKALFDE 159 (162)
Q Consensus 144 y~~~g~~~~a~~~~~~ 159 (162)
+...|++++|.+.+++
T Consensus 184 ~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 184 SLARGDLDNARSQLNR 199 (373)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 9999999999998865
No 107
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.05 E-value=7.9e-05 Score=45.60 Aligned_cols=96 Identities=6% Similarity=-0.041 Sum_probs=75.1
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHH
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVK 107 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 107 (162)
.++..+..+-..+. .|++++|...|+... | +...|..+-..+...|++++|...+++..+.. +.+...+..+-.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 35566777777777 999999999998775 3 46778888888888999999999998887643 224556777888
Q ss_pred HhhhhccchhhhHHHHHHHHHh
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
.+...|++++|...+....+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 8888999999999888877653
No 108
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.03 E-value=0.00013 Score=46.88 Aligned_cols=111 Identities=8% Similarity=-0.047 Sum_probs=84.7
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHH-hhhhccc--hhhh
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA-SDQCLLI--GVGG 119 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~-~~~~~~~--~~a~ 119 (162)
.|++++|...++... .+...|..+-..|...|++++|...|++..+.. +.+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 678888888887764 467788888899999999999999999986642 1244556666666 6678888 9999
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+....+.. +.+...+..+-..|...|++++|...|++
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999888764 23567788888999999999999998875
No 109
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.03 E-value=6.3e-05 Score=54.49 Aligned_cols=120 Identities=11% Similarity=-0.041 Sum_probs=76.8
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCC-C-----chhHHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLD-H-----NTYIISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTL 70 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~l 70 (162)
.++...|+.+.|...+......... + ...+++.+=..|. .|++++|...|+... ++ ..++..+
T Consensus 151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3344456677777766665432211 1 1234555556666 888888888887664 21 2367777
Q ss_pred HHHHHcCCCchHHHHHHHHHHHc----CC-CCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 71 IRAYAKTSCSIESIKLFDEMLKT----GL-RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
=..|...|++++|.+.|++..+. +- +....++..+-..+.+.|++++|...+....+
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788888888888888886552 22 23345566777778888888888877766544
No 110
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.02 E-value=3.7e-05 Score=55.47 Aligned_cols=151 Identities=8% Similarity=-0.124 Sum_probs=97.4
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCc---hhHHHHHHHhhC-CCChHHHHHHhhhhC----------CChhHHHHHHHHH
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHN---TYIISRFILTSL-PISLHFTRSLFNNVM----------PPLFAYNTLIRAY 74 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~-~~~~~~a~~~~~~m~----------~~~~~~~~li~~~ 74 (162)
.+...|+.++|...++...+.+.... ...+..+-..|. .|++++|...|+... .....+..+-..|
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34455788888888888776632211 245666666777 888888888877653 1244567777778
Q ss_pred HcCCCchHHHHHHHHHHHcCC-CCC----CccHHHHHHHhhhhcc--------------------chhhhHHHHHHHHH-
Q 045917 75 AKTSCSIESIKLFDEMLKTGL-RPD----NLTYPFVVKASDQCLL--------------------IGVGGSVHSLIFKV- 128 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~~~--------------------~~~a~~i~~~~~~~- 128 (162)
...|++++|...+++..+..- .++ ..++..+-..+...|+ +++|...+....+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877644210 011 3356666777777788 77777777665432
Q ss_pred ---hcC-cchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 129 ---GLH-SDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 129 ---~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+-. ....++..+-..|...|++++|.+.|++
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 111 1134566777777788888888777654
No 111
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.0001 Score=45.49 Aligned_cols=95 Identities=3% Similarity=-0.194 Sum_probs=70.9
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFV 105 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 105 (162)
+...+..+-..+. .|++++|...|+... |+ ...|..+-..|...|++++|...+++..+.. +.+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 4455666666666 888999988888775 65 5777778888888889999988888876542 1244566677
Q ss_pred HHHhhhhccchhhhHHHHHHHHHh
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
...+...|++++|...+....+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 778888888888888888877653
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.01 E-value=6e-05 Score=50.15 Aligned_cols=144 Identities=6% Similarity=-0.032 Sum_probs=94.6
Q ss_pred HHhhchhhhcchhHHHHHhcCCCchhHHHH----------------HHHhhC-CCChHHHHHHhhhhC---C-ChhHHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISR----------------FILTSL-PISLHFTRSLFNNVM---P-PLFAYNT 69 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~ 69 (162)
...|+.++|...+....+.... ++..+.. +-..|. .|++++|...|+... | +...|..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 93 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEA 93 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4557889999998888665321 2333444 566677 999999999999876 4 5788899
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhhcc--chhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQCLL--IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~--~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
+-..+...|++++|...|++..+. .|+ ..++..+-..+...|. ...+...+..... ..|....+..+=.++..
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~ 169 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLF 169 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHH
Confidence 999999999999999999998764 344 4456666666554443 2333333333221 12222233333445566
Q ss_pred cCChhHHHHhhcc
Q 045917 147 CKEIDFAKALFDE 159 (162)
Q Consensus 147 ~g~~~~a~~~~~~ 159 (162)
.|++++|...|++
T Consensus 170 ~~~~~~A~~~~~~ 182 (208)
T 3urz_A 170 TTRYEKARNSLQK 182 (208)
T ss_dssp HHTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 8899999988875
No 113
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=5.8e-05 Score=45.42 Aligned_cols=93 Identities=10% Similarity=-0.061 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc--Ccc----hhHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--HSD----KYIGNT 139 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~--~~~----~~~~~~ 139 (162)
.|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+....+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555556666677777777776665432 22344455566666666777777766666655432 111 455666
Q ss_pred HHHHHHhcCChhHHHHhhcc
Q 045917 140 LLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~ 159 (162)
+-.+|.+.|++++|.+.|++
T Consensus 85 la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 66677777777777766654
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.01 E-value=5.8e-05 Score=52.89 Aligned_cols=126 Identities=7% Similarity=-0.120 Sum_probs=94.7
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHH
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVV 106 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 106 (162)
+.+...+..+-..+. .|++++|...|+... | +...+..+-..+.+.|++++|...+++.... .|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 334444555555666 999999999999886 4 5778888999999999999999999987553 35443222222
Q ss_pred -HHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 107 -KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 107 -~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
..+...++.+++...++...... +.+...+..+-..|...|++++|.+.|.+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 23556677788888888777764 346888999999999999999999998764
No 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=3.8e-05 Score=44.96 Aligned_cols=92 Identities=12% Similarity=-0.045 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCc--chhHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHS--DKYIGNTLLRM 143 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~ll~~ 143 (162)
.|..+-..+...|++++|...|++..+.. +.+...+..+-..+...|++++|...+....+.. +. +...+..+-.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444555556666666666666654432 1233445555555666666666666666655442 12 35555666666
Q ss_pred HHhc-CChhHHHHhhcc
Q 045917 144 YAAC-KEIDFAKALFDE 159 (162)
Q Consensus 144 y~~~-g~~~~a~~~~~~ 159 (162)
|.+. |++++|.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HTTCSSCSHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 6666 666666666554
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=8.4e-05 Score=45.04 Aligned_cols=91 Identities=9% Similarity=-0.119 Sum_probs=60.0
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.+..+=..+. .|++++|...|+... .+...|..+-..|.+.|++++|...|++..+.. +.+...+..+-..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3444444555 777777777777665 346667777777777777777777777766532 1234456666677777
Q ss_pred hccchhhhHHHHHHHHH
Q 045917 112 CLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~ 128 (162)
.|++++|...+....+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 77777777777766554
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.99 E-value=6e-05 Score=47.56 Aligned_cols=94 Identities=7% Similarity=-0.113 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~ 143 (162)
...+..+-..+...|++++|...|++..... +.+...|..+-..+...|++++|...+....+.. +.+...+..+-.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 4445555666677777777777777765432 1244455666667777777777777777776653 2345666677777
Q ss_pred HHhcCChhHHHHhhcc
Q 045917 144 YAACKEIDFAKALFDE 159 (162)
Q Consensus 144 y~~~g~~~~a~~~~~~ 159 (162)
|...|++++|.+.|++
T Consensus 99 ~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 99 LLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 7777777777777654
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.98 E-value=0.00011 Score=44.95 Aligned_cols=91 Identities=7% Similarity=-0.130 Sum_probs=65.6
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.+...=..|. .|++++|...|++.. .+...|..+-.+|.+.|++++|+..|++..+.. +.+...|..+-..+..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3444455566 888888888888765 356777777788888888888888888876532 1234556777777888
Q ss_pred hccchhhhHHHHHHHHH
Q 045917 112 CLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~ 128 (162)
.|++++|...++...+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88888888888877765
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.98 E-value=4.5e-05 Score=58.31 Aligned_cols=110 Identities=8% Similarity=-0.098 Sum_probs=80.8
Q ss_pred CChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHH
Q 045917 48 ISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHS 123 (162)
Q Consensus 48 ~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~ 123 (162)
|++++|...|++.. | +...|..+-..|...|++++|.+.|++..+.. +-+...+..+-..+...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67888999998876 4 57788889999999999999999999987642 2245667888889999999999999999
Q ss_pred HHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 124 LIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 124 ~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
...+.. +.+...+..+-.+|.+.|++++|.+.|++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 988864 34578889999999999999999999875
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.98 E-value=8.6e-05 Score=46.23 Aligned_cols=91 Identities=4% Similarity=-0.150 Sum_probs=71.4
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC 112 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 112 (162)
+..+-..+. .|++++|...|+... | +...|..+-..|.+.|++++|...|++..+.. +-+...+..+-..+...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 333444555 999999999999876 4 67778888888999999999999999987643 23455667788888899
Q ss_pred ccchhhhHHHHHHHHHh
Q 045917 113 LLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 113 ~~~~~a~~i~~~~~~~~ 129 (162)
|++++|...++...+..
T Consensus 100 g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 100 GDLDGAESGFYSARALA 116 (142)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999998887654
No 121
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.97 E-value=7.8e-05 Score=47.48 Aligned_cols=95 Identities=5% Similarity=-0.092 Sum_probs=76.5
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKA 108 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 108 (162)
+...+..+-..+. .|++++|...|+... | +...|..+-..|.+.|++++|...|++..+.. +-+...|..+-..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666666777 999999999999876 4 67788888889999999999999999987643 2245667788888
Q ss_pred hhhhccchhhhHHHHHHHHHh
Q 045917 109 SDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 109 ~~~~~~~~~a~~i~~~~~~~~ 129 (162)
+...|++++|...+....+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 889999999999998887764
No 122
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.97 E-value=3.7e-05 Score=55.69 Aligned_cols=148 Identities=8% Similarity=-0.095 Sum_probs=108.4
Q ss_pred HhhchhhhcchhHHHHHhc-CCCc----hhHHHHHHHhhC-CCChHHHHHHhhhhC------CC-----hhHHHHHHHHH
Q 045917 12 LSKTAHHHHQLPALFLKTS-LDHN----TYIISRFILTSL-PISLHFTRSLFNNVM------PP-----LFAYNTLIRAY 74 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~-----~~~~~~li~~~ 74 (162)
..|+.++|...+....+.- -.++ ..++..+-..|. .|+++.|...++... ++ ..+++.+=..|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 3468888988888876432 1122 345666666777 999999998888764 22 44677788889
Q ss_pred HcCCCchHHHHHHHHHHHc----CCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHH----hcCcchhHHHHHHHHHH
Q 045917 75 AKTSCSIESIKLFDEMLKT----GLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKV----GLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~ll~~y~ 145 (162)
...|++++|.+.|++..+. +-.+ ...++..+-..+...|++++|...+....+. +.+....++..+-..|.
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 9999999999999887542 1111 1235667778888999999999999887661 22333677888899999
Q ss_pred hcCChhHHHHhhcc
Q 045917 146 ACKEIDFAKALFDE 159 (162)
Q Consensus 146 ~~g~~~~a~~~~~~ 159 (162)
+.|++++|...+++
T Consensus 273 ~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 273 KAGQTQKAFQFIEE 286 (378)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999998865
No 123
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.95 E-value=0.00011 Score=46.35 Aligned_cols=108 Identities=6% Similarity=-0.094 Sum_probs=87.8
Q ss_pred CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHH
Q 045917 47 PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSV 121 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i 121 (162)
.|+++.|...++... | +...+-.+=..|.+.|++++|.+.|++..+. .| +..+|..+-..+.+.|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 678899998888876 3 3445666778899999999999999998764 34 456788888999999999999999
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 122 HSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
+....+.. +-+...|..+-..|.+.|+.++|.+.|
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99988864 235788999999999999998766553
No 124
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=6.4e-05 Score=46.80 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=87.7
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CC----Cc
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PD----NL 100 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~ 100 (162)
++..+-..+. .|++++|...+++.. ++ ...+..+-..+...|++++|.+.+++..+..-. ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666 899999998888765 22 246777888888899999999999886542111 11 33
Q ss_pred cHHHHHHHhhhhccchhhhHHHHHHHHHhc----C-cchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGL----H-SDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 101 t~~~li~~~~~~~~~~~a~~i~~~~~~~~~----~-~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+..+-..+...|++++|...+....+... . .....+..+-..|...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 456667778888999999998877654321 1 1245677788899999999999988765
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.92 E-value=3.4e-05 Score=50.74 Aligned_cols=142 Identities=8% Similarity=-0.089 Sum_probs=97.7
Q ss_pred HHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-h----------------hHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-L----------------FAYN 68 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~----------------~~~~ 68 (162)
...-|+++.+.+.|+.-.... ......+..+-..+. .|++++|...|+... |+ . ..|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 344467777777776432221 112334455555666 999999999999875 32 2 6788
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcC
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK 148 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g 148 (162)
.+-..|.+.|++++|...+++..+.. +.+...+..+-.++...|++++|...+....+.. +-+...+..+-.++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 88888999999999999999987642 2345667778888999999999999999888764 235677888888888888
Q ss_pred ChhHHH
Q 045917 149 EIDFAK 154 (162)
Q Consensus 149 ~~~~a~ 154 (162)
+.+++.
T Consensus 171 ~~~~~~ 176 (198)
T 2fbn_A 171 EARKKD 176 (198)
T ss_dssp HHHC--
T ss_pred HHHHHH
Confidence 777766
No 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.91 E-value=0.00013 Score=61.30 Aligned_cols=144 Identities=11% Similarity=-0.009 Sum_probs=85.2
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHH
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
..++...+++++|.++.... -++.+|..+=.++. .|++++|..-|... .|...|..++..+.+.|++++|.+
T Consensus 1083 ~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1083 QVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 34455667777777666543 33666777777777 88888888887553 455566777888888888888888
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHH-----HHHh--------------cCcchhHHHHHHHHHHh
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLI-----FKVG--------------LHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~-----~~~~--------------~~~~~~~~~~ll~~y~~ 146 (162)
.|..-++.. +++...+.+..+|++.+++++.+.+.... ...| +--....|..+..+|.+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 1233 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 877654433 33333334666666665555433322100 0000 00012466777777777
Q ss_pred cCChhHHHHhhcc
Q 045917 147 CKEIDFAKALFDE 159 (162)
Q Consensus 147 ~g~~~~a~~~~~~ 159 (162)
.|+++.|.+.+++
T Consensus 1234 Lge~q~AIEaarK 1246 (1630)
T 1xi4_A 1234 LGEYQAAVDGARK 1246 (1630)
T ss_pred hCCHHHHHHHHHH
Confidence 7777777766643
No 127
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.89 E-value=3.6e-05 Score=50.62 Aligned_cols=116 Identities=10% Similarity=-0.063 Sum_probs=84.5
Q ss_pred HhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCC--------------CccH
Q 045917 43 LTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPD--------------NLTY 102 (162)
Q Consensus 43 ~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~--------------~~t~ 102 (162)
.... .|+++.+...|+.-. .....+..+-..+...|++++|...|++..+..- .|+ ...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344 677777777776543 3455677777888899999999999999876321 121 1567
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+-..+.+.|++++|...+....+.. +.+...+..+-.+|...|++++|.+.|++
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 778888899999999999999988864 34678888899999999999999998875
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.89 E-value=0.00014 Score=51.34 Aligned_cols=146 Identities=10% Similarity=-0.009 Sum_probs=104.4
Q ss_pred hhchhhhcchhHHHHHh------cCCCc----hhHHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHHHH
Q 045917 13 SKTAHHHHQLPALFLKT------SLDHN----TYIISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNTLI 71 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~------~~~~~----~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~li 71 (162)
.|+..+|.++++...+. ++.++ ...|+.....|. .|++++|...|.... .+ ..+|+.+-
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777665432 11233 235666777788 999999999888764 12 45788888
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCC---CC--CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcC---c--chhHHHHHH
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGL---RP--DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH---S--DKYIGNTLL 141 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~---~--~~~~~~~ll 141 (162)
..|.+.|++++|...|++..+.-. .| -..++..+-..+.. |++++|...+......... + ...++..+-
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999999999998654311 11 13456677778878 9999999999887653211 1 146788889
Q ss_pred HHHHhcCChhHHHHhhcc
Q 045917 142 RMYAACKEIDFAKALFDE 159 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~ 159 (162)
..|.+.|++++|.+.|++
T Consensus 163 ~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999999875
No 129
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.88 E-value=0.00014 Score=44.47 Aligned_cols=95 Identities=6% Similarity=-0.160 Sum_probs=54.0
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
+...|..+-..+...|++++|...|++..... +.+...+..+-..+...|++++|...+....+.. +.+...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555556666666666666666654432 1233445555556666666666666666665543 223555666666
Q ss_pred HHHhcCChhHHHHhhcc
Q 045917 143 MYAACKEIDFAKALFDE 159 (162)
Q Consensus 143 ~y~~~g~~~~a~~~~~~ 159 (162)
+|...|++++|...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 86 CQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 66666666666665543
No 130
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=7.7e-05 Score=44.87 Aligned_cols=108 Identities=6% Similarity=-0.066 Sum_probs=76.8
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCC--CCC----CccHHH
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL--RPD----NLTYPF 104 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~t~~~ 104 (162)
..+..+-..+. .|+++.|...|+... .+...|..+-..+...|++++|...+++..+..- .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666667 888888888888775 3566777788888888999999988888765421 222 556677
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 105 li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
+...+...|++++|...+....+.. |+......+-.++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 7788888889999998888887753 45555555544443
No 131
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.83 E-value=8.1e-05 Score=56.04 Aligned_cols=110 Identities=13% Similarity=0.012 Sum_probs=82.3
Q ss_pred CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 47 PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.|++++|...|++.. | +...|..+-..|.+.|++++|.+.+++..+.. +-+...+..+-.++...|++++|.+.+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~ 97 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDY 97 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788999999998775 4 57888888899999999999999999987652 224556777888888999999999999
Q ss_pred HHHHHHhcCcchhHHHHHHHH--HHhcCChhHHHHhhc
Q 045917 123 SLIFKVGLHSDKYIGNTLLRM--YAACKEIDFAKALFD 158 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~ll~~--y~~~g~~~~a~~~~~ 158 (162)
+...+... .+...+..+-.+ +.+.|++++|.+.++
T Consensus 98 ~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 98 ETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88877642 234455555555 888899999988877
No 132
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=0.00047 Score=42.39 Aligned_cols=95 Identities=6% Similarity=-0.136 Sum_probs=78.4
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC----CccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIG 137 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 137 (162)
.+...+..+-..+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+....+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45677888888889999999999999998763 455 5677778888889999999999998887763 3357788
Q ss_pred HHHHHHHHhcCChhHHHHhhcc
Q 045917 138 NTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 138 ~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..+-.+|...|++++|.+.|++
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 8888899999999999998875
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.82 E-value=7.1e-05 Score=48.88 Aligned_cols=113 Identities=8% Similarity=-0.100 Sum_probs=83.4
Q ss_pred CCChHHHHH---HhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc----CCCC-CCccHHHHHHHhhhhccchh
Q 045917 47 PISLHFTRS---LFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT----GLRP-DNLTYPFVVKASDQCLLIGV 117 (162)
Q Consensus 47 ~~~~~~a~~---~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~~~~~~ 117 (162)
.|++++|.+ .+..-+ .....+..+-..+...|++++|...+++..+. +..| ....+..+-..+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 689999999 554433 45678888888999999999999999997652 2211 23456667778889999999
Q ss_pred hhHHHHHHHHHh-cCc-----chhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 118 GGSVHSLIFKVG-LHS-----DKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 118 a~~i~~~~~~~~-~~~-----~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
|...+....+.- -.+ ....+..+-..|...|++++|.+.+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999988765531 112 244577888899999999999998865
No 134
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.81 E-value=0.00028 Score=45.50 Aligned_cols=116 Identities=9% Similarity=-0.072 Sum_probs=83.8
Q ss_pred HHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh--hhhc
Q 045917 41 FILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS--DQCL 113 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~--~~~~ 113 (162)
+-..+. .|++++|...|+... .+...|..+-..+...|++++|...|++.... .|+. .+..+...+ ...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~-~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDN-SYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCCh-HHHHHHHHHHHHhhc
Confidence 334555 899999999999987 46778899999999999999999999987543 3433 232222211 1222
Q ss_pred cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 114 ~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
....+...++...+.. +-+...+..+-.+|...|++++|.+.|++.
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3344667777766653 235788899999999999999999998764
No 135
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.81 E-value=0.001 Score=47.72 Aligned_cols=153 Identities=5% Similarity=-0.147 Sum_probs=101.3
Q ss_pred HHHHHhhchhhhcchhHHHHHhcC-CCch----hHHHHHHHhhC-CCChHHHHHHhhhhC--------C----ChhHHHH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSL-DHNT----YIISRFILTSL-PISLHFTRSLFNNVM--------P----PLFAYNT 69 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~-~~~~~~a~~~~~~m~--------~----~~~~~~~ 69 (162)
.++...|++++|.+.+........ ..++ .++..+-..+. .|++++|...+++.. + ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 344456788888888877654321 1122 22444555666 999999999988764 1 1234555
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCC--C--CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcch-hHHH-----H
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLR--P--DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDK-YIGN-----T 139 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~-~~~~-----~ 139 (162)
+-..+...|++++|...+++..+..-. + ...++..+-..+...|++++|...++......-.++. ..+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 667788899999999999987654222 1 1234666777888899999999999887765322221 1222 2
Q ss_pred HHHHHHhcCChhHHHHhhccc
Q 045917 140 LLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~m 160 (162)
....+...|++++|.+.+++.
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHhC
Confidence 334577999999999888754
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.81 E-value=0.00012 Score=42.78 Aligned_cols=95 Identities=5% Similarity=-0.182 Sum_probs=70.1
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CCCccHHHHHHH
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PDNLTYPFVVKA 108 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~ 108 (162)
...+..+-..+. .|++++|...|+... .+...|..+-..+...|++++|...|++..+..-. .+...+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555555666 888889888888765 45667778888888889999999998888764211 135667777788
Q ss_pred hhhh-ccchhhhHHHHHHHHHh
Q 045917 109 SDQC-LLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 109 ~~~~-~~~~~a~~i~~~~~~~~ 129 (162)
+.+. |++++|.+.+....+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 89999988888876653
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.00034 Score=41.08 Aligned_cols=93 Identities=8% Similarity=-0.093 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y 144 (162)
..|..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+-.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666677777777777777765532 1244455666667777777777777777766653 23456667777777
Q ss_pred HhcCChhHHHHhhcc
Q 045917 145 AACKEIDFAKALFDE 159 (162)
Q Consensus 145 ~~~g~~~~a~~~~~~ 159 (162)
...|++++|.+.|++
T Consensus 83 ~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 83 EFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 777777777777654
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.78 E-value=0.00039 Score=44.14 Aligned_cols=84 Identities=11% Similarity=-0.072 Sum_probs=59.6
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchH
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~ 82 (162)
..+...|++++|.+.+....+.. +.++..+..+-..|. .|++++|...|+... | +...|..+-..|...|++++
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 97 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKG 97 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Confidence 34445567778888777776654 234566666666777 888888888887765 3 46677777777888888888
Q ss_pred HHHHHHHHHH
Q 045917 83 SIKLFDEMLK 92 (162)
Q Consensus 83 a~~~~~~m~~ 92 (162)
|...|++..+
T Consensus 98 A~~~~~~al~ 107 (164)
T 3sz7_A 98 AKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887755
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.77 E-value=0.00037 Score=43.79 Aligned_cols=95 Identities=11% Similarity=-0.024 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM 143 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~ 143 (162)
...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+-.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456777778889999999999999987642 2356667788888899999999999999988764 3457788889999
Q ss_pred HHhcCChhHHHHhhccc
Q 045917 144 YAACKEIDFAKALFDEM 160 (162)
Q Consensus 144 y~~~g~~~~a~~~~~~m 160 (162)
|...|++++|.+.|++.
T Consensus 91 ~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 91 NMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH
Confidence 99999999999998763
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00068 Score=40.89 Aligned_cols=92 Identities=15% Similarity=-0.005 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
.|...=..+.+.|++++|...|++..+.. +.+...|..+-..+.+.|++++|...+....+.. +.+...|..+-.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445556667777777777777765532 2234556666677777777777777777776653 234566667777777
Q ss_pred hcCChhHHHHhhcc
Q 045917 146 ACKEIDFAKALFDE 159 (162)
Q Consensus 146 ~~g~~~~a~~~~~~ 159 (162)
..|++++|.+.|++
T Consensus 84 ~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 84 AVKEYASALETLDA 97 (126)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHH
Confidence 77777777776654
No 141
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.74 E-value=0.002 Score=42.81 Aligned_cols=147 Identities=7% Similarity=-0.091 Sum_probs=106.7
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhCCC----ChHHHHHHhhhhC--CChhHHHHHHHHHHc----C
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPI----SLHFTRSLFNNVM--PPLFAYNTLIRAYAK----T 77 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~a~~~~~~m~--~~~~~~~~li~~~~~----~ 77 (162)
.++...++.++|...+....+.| ++..+..|=..|..+ +.++|...|+... -+...+..+=..|.. .
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~ 102 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA 102 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSS
T ss_pred HHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCc
Confidence 34444578889999998887766 344455555555533 8999999999887 567777777777776 8
Q ss_pred CCchHHHHHHHHHHHcCCC-CCCccHHHHHHHhhh----hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc-C---
Q 045917 78 SCSIESIKLFDEMLKTGLR-PDNLTYPFVVKASDQ----CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC-K--- 148 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~-g--- 148 (162)
+++++|...|++..+.|.. .+...+..|-..+.. .++.++|...+....+. ..+...+..|=.+|... |
T Consensus 103 ~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~ 180 (212)
T 3rjv_A 103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFI 180 (212)
T ss_dssp CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTB
T ss_pred cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCC
Confidence 8999999999998765432 014566677677766 67899999999888776 23455677777788764 3
Q ss_pred --ChhHHHHhhcc
Q 045917 149 --EIDFAKALFDE 159 (162)
Q Consensus 149 --~~~~a~~~~~~ 159 (162)
+.++|.+.|++
T Consensus 181 ~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 181 EPNKQKALHWLNV 193 (212)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 89999988864
No 142
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=2.2e-05 Score=47.29 Aligned_cols=98 Identities=8% Similarity=-0.101 Sum_probs=63.6
Q ss_pred CCChHHHHHHhhhhC-C------ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhh
Q 045917 47 PISLHFTRSLFNNVM-P------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGG 119 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~ 119 (162)
.|++++|...|+... . +...|..+-..|...|++++|...|++..+..- -+...+..+-.++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777654 2 245677777788888999999999888766422 23556677778888888889888
Q ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHH
Q 045917 120 SVHSLIFKVGL-HSDKYIGNTLLRMYA 145 (162)
Q Consensus 120 ~i~~~~~~~~~-~~~~~~~~~ll~~y~ 145 (162)
..+....+... .|+...|...+..|.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 88887766532 233444444444443
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.72 E-value=0.00023 Score=43.17 Aligned_cols=85 Identities=11% Similarity=-0.011 Sum_probs=41.9
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
..+.+.|++++|...|++..+. .| +...|..+-..+...|+.++|...++...+... -+...+..+-.+|...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 3444455555555555555432 12 333344444455555555555555555544421 2344455555555555555
Q ss_pred hHHHHhhcc
Q 045917 151 DFAKALFDE 159 (162)
Q Consensus 151 ~~a~~~~~~ 159 (162)
++|.+.|++
T Consensus 102 ~~A~~~~~~ 110 (121)
T 1hxi_A 102 NAALASLRA 110 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 144
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.70 E-value=0.00073 Score=40.69 Aligned_cols=83 Identities=12% Similarity=-0.074 Sum_probs=59.4
Q ss_pred hhC-CCChHHHHHHhhhhC---CCh----hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC----CccHHHHHHHhhh
Q 045917 44 TSL-PISLHFTRSLFNNVM---PPL----FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD----NLTYPFVVKASDQ 111 (162)
Q Consensus 44 ~~~-~~~~~~a~~~~~~m~---~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~li~~~~~ 111 (162)
.+. .|++++|...|+... |+. ..+..+-..+...|++++|...|++..+.. |+ ...+..+-..+..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHH
Confidence 344 788888888888765 443 366667777788888888888888876542 33 2345566677778
Q ss_pred hccchhhhHHHHHHHHH
Q 045917 112 CLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 112 ~~~~~~a~~i~~~~~~~ 128 (162)
.|+.++|...++.+.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888887765
No 145
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.70 E-value=0.00075 Score=48.77 Aligned_cols=150 Identities=9% Similarity=-0.009 Sum_probs=99.5
Q ss_pred HHHHHHhhchhhhcchhHHHHHhc--CC--C-chhHHHHHHHhhC-CCChHHHHHHhhhhC--------C-ChhHHHHHH
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTS--LD--H-NTYIISRFILTSL-PISLHFTRSLFNNVM--------P-PLFAYNTLI 71 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~--~~--~-~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--------~-~~~~~~~li 71 (162)
..++...|+.++|.+.+....+.. .. + ...++..+=..|. .|++++|...|++.. | ...++..+-
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 344455578888888887765421 11 1 2345666666777 999999999888764 2 256677788
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCCcc----HHHHHHHhhhhcc---chhhhHHHHHHHHHhcCcc-hhHHHHHHHH
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLT----YPFVVKASDQCLL---IGVGGSVHSLIFKVGLHSD-KYIGNTLLRM 143 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t----~~~li~~~~~~~~---~~~a~~i~~~~~~~~~~~~-~~~~~~ll~~ 143 (162)
..|.+.|++++|...+++..+..-..+... +..+-..+...++ +.+|...++. .+..|+ ...+..+-..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 889999999999999999876533322222 3334444445555 4444444443 333233 3456778889
Q ss_pred HHhcCChhHHHHhhcc
Q 045917 144 YAACKEIDFAKALFDE 159 (162)
Q Consensus 144 y~~~g~~~~a~~~~~~ 159 (162)
|.+.|++++|...|++
T Consensus 346 y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 346 FESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 9999999999998875
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.69 E-value=0.00037 Score=48.61 Aligned_cols=86 Identities=7% Similarity=-0.108 Sum_probs=70.3
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCc
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCS 80 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~ 80 (162)
....+...|+.++|...+....+.. +.++..+..+-..|. .|++++|...++... | +...|..+-.+|...|++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3445566789999999999887763 235677777888888 999999999999886 4 577888888999999999
Q ss_pred hHHHHHHHHHHH
Q 045917 81 IESIKLFDEMLK 92 (162)
Q Consensus 81 ~~a~~~~~~m~~ 92 (162)
++|...|++..+
T Consensus 89 ~~A~~~~~~al~ 100 (281)
T 2c2l_A 89 DEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.68 E-value=0.00096 Score=47.78 Aligned_cols=118 Identities=7% Similarity=-0.108 Sum_probs=92.1
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCc--------------hhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHH
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHN--------------TYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAY 67 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~ 67 (162)
-..+...|+.++|...|........... ...+..+-..|. .|++++|...|+... .+...|
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 233 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 233 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3445566789999999998877654332 477888888888 999999999999886 467888
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhh-HHHHHHH
Q 045917 68 NTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGG-SVHSLIF 126 (162)
Q Consensus 68 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~-~i~~~~~ 126 (162)
..+-.+|...|++++|...|++..+. .| +...+..+-..+.+.|+.+++. .++..|.
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764 34 4456777778888888888884 4555543
No 148
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.68 E-value=0.0009 Score=40.83 Aligned_cols=92 Identities=9% Similarity=0.007 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
.|...=..|.+.|++++|++.|++..+.. +.+...|..+-.++.+.|++++|...+....+.. +.+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444556777888888888888876532 2345566777788888888888888888877764 235677778888888
Q ss_pred hcCChhHHHHhhcc
Q 045917 146 ACKEIDFAKALFDE 159 (162)
Q Consensus 146 ~~g~~~~a~~~~~~ 159 (162)
..|++++|.+.|++
T Consensus 93 ~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 93 AMREWSKAQRAYED 106 (126)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888887764
No 149
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.68 E-value=0.00011 Score=57.60 Aligned_cols=150 Identities=9% Similarity=-0.100 Sum_probs=111.7
Q ss_pred HHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCch
Q 045917 7 ETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~ 81 (162)
..++...|+.++|.+.++...+.. +-+...+..+=..|. .|++++|...|+... | +...|..+-..|.+.|+++
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTD 518 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Confidence 344556688999999998887654 234566777777777 999999999999876 4 5778888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC--------hhHH
Q 045917 82 ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE--------IDFA 153 (162)
Q Consensus 82 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~--------~~~a 153 (162)
+ ...|++..+.. +-+...|..+-..+.+.|++++|...++...+.. +-+...+..+-.+|...|+ +++|
T Consensus 519 ~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 595 (681)
T 2pzi_A 519 E-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDA 595 (681)
T ss_dssp T-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHH
T ss_pred H-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 9 99999987642 1244567888899999999999999998876643 1235667777777766444 6677
Q ss_pred HHhhccc
Q 045917 154 KALFDEM 160 (162)
Q Consensus 154 ~~~~~~m 160 (162)
.+.+.++
T Consensus 596 ~~~l~~~ 602 (681)
T 2pzi_A 596 ARRVEAL 602 (681)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 7766554
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.66 E-value=0.00069 Score=45.15 Aligned_cols=136 Identities=7% Similarity=-0.105 Sum_probs=103.3
Q ss_pred hhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--CChhHHHHHHHHHHcCC----CchHHHHHHHH
Q 045917 17 HHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--PPLFAYNTLIRAYAKTS----CSIESIKLFDE 89 (162)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~~~----~~~~a~~~~~~ 89 (162)
.+|.+.+......| ++..+..|=..|. .+++++|...|+... -+...+..+=..|.. + +.++|...|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35666777766654 5666777777777 999999999999887 566677777666776 6 89999999999
Q ss_pred HHHcCCCCCCccHHHHHHHhhh----hccchhhhHHHHHHHHHhcC-cchhHHHHHHHHHHh----cCChhHHHHhhcc
Q 045917 90 MLKTGLRPDNLTYPFVVKASDQ----CLLIGVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAA----CKEIDFAKALFDE 159 (162)
Q Consensus 90 m~~~~~~p~~~t~~~li~~~~~----~~~~~~a~~i~~~~~~~~~~-~~~~~~~~ll~~y~~----~g~~~~a~~~~~~ 159 (162)
..+.| +...+..|-..+.. .++.++|...+....+.|.. .+...+..|=.+|.. .++.++|.+.|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 87764 45566666666665 67899999998888776532 126778888888888 8899999998865
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.66 E-value=0.0006 Score=42.28 Aligned_cols=92 Identities=10% Similarity=-0.099 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
.+..+-..+.+.|++++|...|++..... +.+...|..+-..+.+.|++++|...+....+.. +.+...+..+-.+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555666777777777777765432 1234445556666667777777777777766653 234566666667777
Q ss_pred hcCChhHHHHhhcc
Q 045917 146 ACKEIDFAKALFDE 159 (162)
Q Consensus 146 ~~g~~~~a~~~~~~ 159 (162)
..|++++|.+.|++
T Consensus 98 ~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 98 QLGDLDGAESGFYS 111 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 77777777776654
No 152
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.66 E-value=0.00099 Score=46.47 Aligned_cols=121 Identities=9% Similarity=-0.085 Sum_probs=87.4
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC---CC-------hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CC----CccH
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM---PP-------LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR-PD----NLTY 102 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~---~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~t~ 102 (162)
...+..+. .|++++|...++... +. ...+..+-..+...|++++|...+++..+.... .+ ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34455666 999999999887553 21 122333555567789999999999998653222 12 2367
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHH-hcCcc-----hhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 103 PFVVKASDQCLLIGVGGSVHSLIFKV-GLHSD-----KYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~i~~~~~~~-~~~~~-----~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+.+-..+...|++++|...+....+. ...|+ ..++..+-..|.+.|++++|...+++
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 77888899999999999999887632 11222 25888899999999999999998875
No 153
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.65 E-value=0.0018 Score=54.61 Aligned_cols=135 Identities=14% Similarity=0.068 Sum_probs=99.3
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHH
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
+..++...|..++|..+|+... ......+.++.. .+++++|.++.++.. +..+|..+=.++.+.|++++|.+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~--i~nldrAiE~Aervn-~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEH--IGNLDRAYEFAERCN-EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHH--HhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455556678888888888852 122222333221 789999999988665 45688899999999999999999
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
-|.+- -|...|..++.+|.+.|+++++.+.+....+.. ++....+.+..+|++.+++++....
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 99653 567778889999999999999999998777654 3444445588888888887765544
No 154
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=9.8e-05 Score=43.37 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc-------hhH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD-------KYI 136 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~-------~~~ 136 (162)
...|..+-..+...|++++|.+.|++..+.. +.+...+..+-..+.+.|++++|...+....+.. |+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 3455566667777778888888777765532 1244556666677777778888877777766542 33 445
Q ss_pred HHHHHHHHHhcCChhHHHHhhcccC
Q 045917 137 GNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 137 ~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
+..+-.++...|+.+.|.+.|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5566667777777777777776654
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.57 E-value=0.00053 Score=51.26 Aligned_cols=118 Identities=11% Similarity=-0.019 Sum_probs=93.3
Q ss_pred hHHHHHHHhhC-CCChHHHHHHhhhhC---CC----------------hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 045917 36 YIISRFILTSL-PISLHFTRSLFNNVM---PP----------------LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 95 (162)
Q Consensus 36 ~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 95 (162)
..+..+=..+. .|++++|...|+... |+ ...|..+-.+|.+.|++++|+..|++..+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 44555666677 999999999999876 44 4788889999999999999999999987643
Q ss_pred CCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHH
Q 045917 96 RPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 96 ~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
+.+...|..+-.++...|++++|...+....+.. +-+...+..+-.++.+.|+.++|.+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356667788889999999999999999887753 2356788888889999998887764
No 156
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.56 E-value=0.003 Score=47.32 Aligned_cols=137 Identities=12% Similarity=-0.079 Sum_probs=80.1
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-C-----CChHHHHHHhhhhC--CChhHHHHHHHHHHcCC---CchH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-P-----ISLHFTRSLFNNVM--PPLFAYNTLIRAYAKTS---CSIE 82 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~-----~~~~~a~~~~~~m~--~~~~~~~~li~~~~~~~---~~~~ 82 (162)
++.++|...++.....| ++..+..+-..|. . ++.++|...|+... .+...+..+-..|...| +.++
T Consensus 273 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHH
Confidence 34555555555554443 2233333333333 3 67777777776655 34445555555555444 6667
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhh----hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh----cCChhHHH
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQ----CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA----CKEIDFAK 154 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~----~g~~~~a~ 154 (162)
|.+.|++..+.| +...+..+-..+.. .++.++|...+....+.| +...+..|-.+|.+ .++.++|.
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 777777766552 44455555555555 567777777777766654 34566666677776 67777777
Q ss_pred Hhhcc
Q 045917 155 ALFDE 159 (162)
Q Consensus 155 ~~~~~ 159 (162)
+.|++
T Consensus 424 ~~~~~ 428 (490)
T 2xm6_A 424 AWFDT 428 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 157
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.56 E-value=0.00062 Score=53.53 Aligned_cols=156 Identities=11% Similarity=-0.045 Sum_probs=110.7
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhc---------CCC------------chhHHHHHHHhhC-CCChHHHHHHhhhhC-
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTS---------LDH------------NTYIISRFILTSL-PISLHFTRSLFNNVM- 61 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~ll~~~~-~~~~~~a~~~~~~m~- 61 (162)
.++.+....|+.+.|+++|+.+.... ..| .+.+|...++... .|.++.|..+|+...
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566788899999998887642 113 2346777777766 888999999999875
Q ss_pred C-C---hhHHHHHHHHHHcC-CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcC--cch
Q 045917 62 P-P---LFAYNTLIRAYAKT-SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH--SDK 134 (162)
Q Consensus 62 ~-~---~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~--~~~ 134 (162)
. + ...|-.....-.+. ++.+.|..+|....+. ..-+..-|...++.....|+.+.|+.+|+........ -..
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 1 2 22332222222233 5699999999998765 3334444567888888889999999999988776432 246
Q ss_pred hHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 135 YIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 135 ~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
..|...++.-.+.|+.+.+.++.+++.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788899999999999999999988764
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.56 E-value=0.0009 Score=40.83 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhc--Ccc----hhHHHHHH
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL--HSD----KYIGNTLL 141 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~--~~~----~~~~~~ll 141 (162)
.+=..+.+.|++++|++.|++..+. .| +...|..+-..+.+.|++++|...+....+... .++ ..+|..+=
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3334455556666666666655442 22 233445555555666666666665555544321 111 12344444
Q ss_pred HHHHhcCChhHHHHhhc
Q 045917 142 RMYAACKEIDFAKALFD 158 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~ 158 (162)
.+|.+.|++++|.+.|+
T Consensus 91 ~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 55556666666666554
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.55 E-value=0.00029 Score=49.44 Aligned_cols=116 Identities=9% Similarity=-0.148 Sum_probs=78.4
Q ss_pred hhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC--CccHHHHHHHhhhhccchh
Q 045917 44 TSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD--NLTYPFVVKASDQCLLIGV 117 (162)
Q Consensus 44 ~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~~~~~~ 117 (162)
.+. .|++++|..+|+... |+....-.+-..+.+.+++++|+..|+...... .|. ...+..+=.++...|++++
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~e 189 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTE 189 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHH
Confidence 344 789999999998886 543344444457777889999998887443221 111 2245566677888889999
Q ss_pred hhHHHHHHHHHhcCcc--hhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 118 GGSVHSLIFKVGLHSD--KYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 118 a~~i~~~~~~~~~~~~--~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
|...++........|. .......-.++.+.|+.++|..+|+++
T Consensus 190 Al~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 190 AERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9888888764332143 335566667788899999999888764
No 160
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.53 E-value=0.0013 Score=44.02 Aligned_cols=116 Identities=12% Similarity=-0.011 Sum_probs=82.1
Q ss_pred HHHhhC-CCChHHHHHHhhhhC---CCh----hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc----cHHHHHHH
Q 045917 41 FILTSL-PISLHFTRSLFNNVM---PPL----FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL----TYPFVVKA 108 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~---~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~li~~ 108 (162)
+-..+. .|++++|...|+.+. |+. ..+..+-.+|.+.|++++|...|++..+. .|+.. .+..+-.+
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHH
Confidence 334455 899999999999886 542 46777788999999999999999998764 24433 23223333
Q ss_pred hh------------------hhccchhhhHHHHHHHHHhcCcc-hhHH-----------------HHHHHHHHhcCChhH
Q 045917 109 SD------------------QCLLIGVGGSVHSLIFKVGLHSD-KYIG-----------------NTLLRMYAACKEIDF 152 (162)
Q Consensus 109 ~~------------------~~~~~~~a~~i~~~~~~~~~~~~-~~~~-----------------~~ll~~y~~~g~~~~ 152 (162)
+. ..|+.++|...+..+.+.. |+ ...+ -.+-..|.+.|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 32 2578899999998887652 33 3332 234557889999999
Q ss_pred HHHhhccc
Q 045917 153 AKALFDEM 160 (162)
Q Consensus 153 a~~~~~~m 160 (162)
|...|++.
T Consensus 166 A~~~~~~~ 173 (225)
T 2yhc_A 166 VVNRVEGM 173 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 161
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.46 E-value=0.0071 Score=45.24 Aligned_cols=77 Identities=6% Similarity=-0.073 Sum_probs=32.0
Q ss_pred CChHHHHHHhhhhC--CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh----hccchh
Q 045917 48 ISLHFTRSLFNNVM--PPLFAYNTLIRAYAK----TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ----CLLIGV 117 (162)
Q Consensus 48 ~~~~~a~~~~~~m~--~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~~ 117 (162)
++.++|...|+... -+...+..+=..|.. .++.++|.+.|++..+.| +...+..+-..+.. .++.++
T Consensus 129 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 34445555444443 233333333333333 344455555554444332 23333333333333 344444
Q ss_pred hhHHHHHHHH
Q 045917 118 GGSVHSLIFK 127 (162)
Q Consensus 118 a~~i~~~~~~ 127 (162)
|...+....+
T Consensus 206 A~~~~~~a~~ 215 (490)
T 2xm6_A 206 SAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 162
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.45 E-value=0.0016 Score=43.18 Aligned_cols=100 Identities=14% Similarity=0.006 Sum_probs=79.9
Q ss_pred CCChHHHHHHhhhhC---CC-hhHHHH----------------HHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHH
Q 045917 47 PISLHFTRSLFNNVM---PP-LFAYNT----------------LIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFV 105 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~l 105 (162)
.|++++|...|+... |+ ...|.. +-..|.+.|++++|...|++..+. .| +...+..+
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 94 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEAC 94 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 899999999999876 43 444555 777889999999999999998764 34 45667888
Q ss_pred HHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~ 149 (162)
-..+...|++++|...++...+.. +-+...+..+-.+|...|+
T Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 95 AEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 899999999999999999998864 2357778777777765554
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.002 Score=47.07 Aligned_cols=150 Identities=7% Similarity=-0.106 Sum_probs=105.1
Q ss_pred HHHhhchhhhcchhHHHHHhcCCC-c---------------hhHHHHHHHhhC-CCChHHHHHHhhhhC------CCh--
Q 045917 10 IQLSKTAHHHHQLPALFLKTSLDH-N---------------TYIISRFILTSL-PISLHFTRSLFNNVM------PPL-- 64 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~~~~-~---------------~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~~-- 64 (162)
+...|+.++|.+.+..+.+..... + ...+..|...|. .|++++|...+.... ++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 455678999999998887644322 1 123677888888 999999999998775 221
Q ss_pred --hHHHHHHHHHHcCCCchHHHHHHHHHHH----cCCCCC-CccHHHHHHHhhhhccchhhhHHHHHHHHHhcC----c-
Q 045917 65 --FAYNTLIRAYAKTSCSIESIKLFDEMLK----TGLRPD-NLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLH----S- 132 (162)
Q Consensus 65 --~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~----~- 132 (162)
...+.+=..+...|+.+.+..++++... .+..+. ..++..+...+...|++++|..++..+...-.. +
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 1222222333346899999999988643 233332 235567888899999999999999887653221 1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 133 DKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 133 ~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
...++..+...|...|++++|...+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 245788899999999999999988764
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.42 E-value=0.00095 Score=46.52 Aligned_cols=94 Identities=6% Similarity=-0.041 Sum_probs=75.2
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVK 107 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 107 (162)
+...+..+-..+. .|++++|...|+... | +...|..+-..|.+.|++++|...+++..+. .| +...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445566666777 999999999999876 4 6788888889999999999999999988653 34 4456777788
Q ss_pred HhhhhccchhhhHHHHHHHHHh
Q 045917 108 ASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
++...|++++|...+....+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8899999999999998877654
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.40 E-value=0.0027 Score=38.66 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=69.0
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCC----CccHHHHH
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LRPD----NLTYPFVV 106 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~t~~~li 106 (162)
+..+=..+. .|++++|...|+... | +...|+.+=..|.+.|++++|++.|++..+.. ..++ ..+|..+-
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 444555666 899999999998765 4 46778888888889999999999998875431 1111 12344555
Q ss_pred HHhhhhccchhhhHHHHHHHHHhcCcchhHHHH
Q 045917 107 KASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNT 139 (162)
Q Consensus 107 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 139 (162)
..+...|++++|.+.+....+. .||..+...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 6667778888888888877654 456554433
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.39 E-value=0.00067 Score=42.02 Aligned_cols=123 Identities=7% Similarity=-0.093 Sum_probs=87.1
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCC-Cc----hhHHHHHHHhhC-CCChHHHHHHhhhhC------CC----hhHHHH
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLD-HN----TYIISRFILTSL-PISLHFTRSLFNNVM------PP----LFAYNT 69 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~----~~~~~~ 69 (162)
+...+...|++++|...+......... ++ ..++..+-..+. .|++++|...++... ++ ...+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 444555668888998888776543211 11 245666677777 999999999999865 12 456777
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHc----CCC-CCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKT----GLR-PDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
+-..+...|++++|.+.+++..+. +-. .....+..+-..+...|+.++|...+....+.
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888999999999999987543 111 11345666778888899999999988876653
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.39 E-value=0.0049 Score=36.89 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=39.5
Q ss_pred HhhchhhhcchhHHHHHhcCCCc--hhHHHHHHHhhC-CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHcCCCch
Q 045917 12 LSKTAHHHHQLPALFLKTSLDHN--TYIISRFILTSL-PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAKTSCSI 81 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~~~~~~ 81 (162)
..|+.++|...+....+...... +..+..+-..+. .|++++|...|+... |+ ...+..+-..+...|+++
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~ 93 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT 93 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHH
Confidence 34555555555555544321111 123333444444 566666666555543 32 333444455555556666
Q ss_pred HHHHHHHHHHH
Q 045917 82 ESIKLFDEMLK 92 (162)
Q Consensus 82 ~a~~~~~~m~~ 92 (162)
+|...|++..+
T Consensus 94 ~A~~~~~~~~~ 104 (129)
T 2xev_A 94 EAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00063 Score=48.81 Aligned_cols=122 Identities=11% Similarity=-0.049 Sum_probs=71.0
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC---CChh------------------HHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM---PPLF------------------AYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
.+..+=..+. .|++++|...|+... |+.. .|..+-.+|.+.|++++|...+++..+..
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3555556677 999999999999865 5433 78888888999999999999999987642
Q ss_pred CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHH-HHhcCChhHHHHhhccc
Q 045917 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRM-YAACKEIDFAKALFDEM 160 (162)
Q Consensus 95 ~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~-y~~~g~~~~a~~~~~~m 160 (162)
+.+...+..+-.++...|++++|...+....+.. +-+...+..|-.. ....+..+.+.+.|.+|
T Consensus 261 -p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 261 -EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345677888889999999999999988876542 1234555555555 33456677777777665
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.37 E-value=0.0017 Score=45.51 Aligned_cols=131 Identities=6% Similarity=-0.145 Sum_probs=93.9
Q ss_pred HHHHHHHHhhchhhhcchhHHHHHhcCCCch-hHHHHHHHhhC-CCChHHHHHHhhhhC--CCh----hHHHHHHHHHHc
Q 045917 5 QIETLIQLSKTAHHHHQLPALFLKTSLDHNT-YIISRFILTSL-PISLHFTRSLFNNVM--PPL----FAYNTLIRAYAK 76 (162)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~----~~~~~li~~~~~ 76 (162)
.+..++...|+.++|.++++.+...+ |+. ..|+.-+ .+. .+++++|...|+... |+. ..+-.+=.++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAV-VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHH-HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHH-HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 46778888899999999998886644 332 3333332 444 999999999999776 433 245556667888
Q ss_pred CCCchHHHHHHHHHHHcCCCCCC--ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHH
Q 045917 77 TSCSIESIKLFDEMLKTGLRPDN--LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 140 (162)
.|++++|++.|++-......|.. ......-.++.+.|+.++|..+++.+.... |+...+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 99999999999998754443542 234455667778999999999999998874 444444333
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.32 E-value=0.00032 Score=42.02 Aligned_cols=81 Identities=6% Similarity=-0.104 Sum_probs=63.3
Q ss_pred hhchhhhcchhHHHHHhcC--CCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHH
Q 045917 13 SKTAHHHHQLPALFLKTSL--DHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIK 85 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~ 85 (162)
.|+.++|...+....+.+. +.++..+..+-..|. .|++++|...|+... | +...+..+-.++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4678899999988877642 234566777777788 999999999999886 4 57788888899999999999999
Q ss_pred HHHHHHHc
Q 045917 86 LFDEMLKT 93 (162)
Q Consensus 86 ~~~~m~~~ 93 (162)
.|++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99997653
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.28 E-value=0.0042 Score=39.14 Aligned_cols=90 Identities=10% Similarity=0.045 Sum_probs=64.3
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-C---------------------ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-P---------------------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
+...=..+. .|++++|...|.... . +...|..+-.+|.+.|++++|+..+++..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444445556 888888888887653 1 12467777778888888888888888876642
Q ss_pred CCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 95 LRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 95 ~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
+.+...|..+-.++...|++++|...+....+.
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 224556677777888888888888888887765
No 172
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.27 E-value=0.0047 Score=45.56 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 47 PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
.++.++|...+++.. .+...+..+-..|...|++++|...|++..+
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 567778888877654 4566777788888888888888888877654
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0065 Score=44.31 Aligned_cols=154 Identities=10% Similarity=-0.048 Sum_probs=105.5
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhc-CCCch---hHHHHHHHhhC--CCChHHHHHHhhhhC----------CChhHHHH
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTS-LDHNT---YIISRFILTSL--PISLHFTRSLFNNVM----------PPLFAYNT 69 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~ll~~~~--~~~~~~a~~~~~~m~----------~~~~~~~~ 69 (162)
+..++...|+.++|.+.+....... ..++. ......+..+. .|+.+.+..+++... .-..++..
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 4556667788889988887765422 22222 22333444444 899999999988764 12456778
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCC-----CccHHHHHHHhhhhccchhhhHHHHHHHHHh--cC-c-c--hhHHH
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPD-----NLTYPFVVKASDQCLLIGVGGSVHSLIFKVG--LH-S-D--KYIGN 138 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~--~~-~-~--~~~~~ 138 (162)
+-..|...|++.+|..++++....-...+ ...+..+...|...|++.+|..++....... +. | . ...+.
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 88999999999999999999754322222 2356777889999999999999998875532 21 1 1 24456
Q ss_pred HHHHHHHhcCChhHHHHhhcc
Q 045917 139 TLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 139 ~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+-..|...|++++|.+.|.+
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 666677789999999877643
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.16 E-value=0.0021 Score=48.31 Aligned_cols=109 Identities=6% Similarity=-0.030 Sum_probs=81.8
Q ss_pred HhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHH
Q 045917 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
..|+.++|.+.++...+.. +.+...+..+-..|. .|++++|...+++.. .+...|..+-..|.+.|++++|.+.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3467888999998887663 334677888888888 999999999999886 4577888899999999999999999
Q ss_pred HHHHHHcCCCCC-CccHHHHHHH--hhhhccchhhhHHHH
Q 045917 87 FDEMLKTGLRPD-NLTYPFVVKA--SDQCLLIGVGGSVHS 123 (162)
Q Consensus 87 ~~~m~~~~~~p~-~~t~~~li~~--~~~~~~~~~a~~i~~ 123 (162)
|++..+. .|+ ...+..+-.+ +.+.|++++|.+.++
T Consensus 97 ~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9998764 343 3344445444 777899999998877
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.15 E-value=0.00034 Score=52.95 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=87.0
Q ss_pred CCChHHHHHHhhhhC-----------C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHH---cCCCCC----CccHHHHHH
Q 045917 47 PISLHFTRSLFNNVM-----------P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLK---TGLRPD----NLTYPFVVK 107 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~----~~t~~~li~ 107 (162)
.|++++|+.++++.- | ...+++.+...|...|++++|..++++..+ .-+.|+ ..+++.|-.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999887653 2 356799999999999999999999998643 223333 345778888
Q ss_pred HhhhhccchhhhHHHHHHHH-----Hhc-Ccc-hhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 108 ASDQCLLIGVGGSVHSLIFK-----VGL-HSD-KYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~~-----~~~-~~~-~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
.|...|++++|+.++++... .|- .|+ ..+.+.|-.++...|.+.+|+.++.+++
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877643 232 233 3345566678888999999999988764
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.09 E-value=0.0064 Score=44.19 Aligned_cols=116 Identities=12% Similarity=-0.012 Sum_probs=92.1
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC--------------------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM--------------------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR 96 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~--------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 96 (162)
+..+=..+. .|++++|...|+... .+...|..+-.+|.+.|++++|.+.+++..+. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 455555666 899999999888653 23567888888999999999999999998764 3
Q ss_pred C-CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 97 P-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 97 p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
| +...+..+-.++...|++++|...++...+.. +-+...+..+-.++.+.++.+++.+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45667778889999999999999999988764 23577788888888889988888765
No 177
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.04 E-value=0.026 Score=41.98 Aligned_cols=117 Identities=6% Similarity=-0.082 Sum_probs=64.3
Q ss_pred hhHHHHHHHhhC-CC---ChHHHHHHhhhhC----CChhHHHHHHHHHHcC----CCchHHHHHHHHHHHcCCCCCCccH
Q 045917 35 TYIISRFILTSL-PI---SLHFTRSLFNNVM----PPLFAYNTLIRAYAKT----SCSIESIKLFDEMLKTGLRPDNLTY 102 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~---~~~~a~~~~~~m~----~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t~ 102 (162)
+..+..|-..|. .| +.++|...|+... ++...+..+-..|... ++.++|...|++.. . -+...+
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~ 251 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASW 251 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHH
Confidence 335555555565 66 6666666666554 3333334444444333 56777777777665 2 233334
Q ss_pred HHHHHH-h--hhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcC-----ChhHHHHhhcc
Q 045917 103 PFVVKA-S--DQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACK-----EIDFAKALFDE 159 (162)
Q Consensus 103 ~~li~~-~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g-----~~~~a~~~~~~ 159 (162)
..+-.. + ...++.++|...+....+.| +...+..|=..|. .| ++++|.+.|++
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 444333 2 34566777777776666655 3445555555555 44 67777766653
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.01 E-value=0.0037 Score=44.76 Aligned_cols=94 Identities=7% Similarity=-0.078 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc------------------cHHHHHHHhhhhccchhhhHHHHHH
Q 045917 64 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL------------------TYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
...|..+=..+.+.|++++|...|++..+. .|+.. .|..+-..+.+.|++++|...+...
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445666777788899999999999997653 24432 6778888899999999999999998
Q ss_pred HHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 126 FKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 126 ~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
.+.. +.+...|..+-.+|...|++++|.+.|++.
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764 346788999999999999999999998764
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.00 E-value=0.0051 Score=45.96 Aligned_cols=95 Identities=6% Similarity=-0.078 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC----------------CccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD----------------NLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
....|...=..|.+.|++++|...|++..+. .|+ ...|..+-.++.+.|++++|...+....
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3556777888899999999999999998763 233 3678888899999999999999999998
Q ss_pred HHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 127 ~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+.. +.+...|..+-.+|...|++++|...|++.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 864 346788889999999999999999998753
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.98 E-value=0.0036 Score=36.99 Aligned_cols=96 Identities=8% Similarity=0.004 Sum_probs=67.0
Q ss_pred HHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 52 FTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 52 ~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
.|...|+... .+...|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+.++|...+....+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555543 457788888888999999999999999987643 22355677788888999999999999988766
Q ss_pred Hhc-CcchhHHHHHHHHHHhcC
Q 045917 128 VGL-HSDKYIGNTLLRMYAACK 148 (162)
Q Consensus 128 ~~~-~~~~~~~~~ll~~y~~~g 148 (162)
... ..+......+...+.+.|
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 432 234445555555444443
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.98 E-value=0.0063 Score=36.65 Aligned_cols=86 Identities=14% Similarity=-0.032 Sum_probs=68.6
Q ss_pred HHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhcc
Q 045917 41 FILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLL 114 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~ 114 (162)
+-..+. .|++++|...|+... | +...|..+=..+...|++++|...|++..+. .| +...+..+-..+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 334455 899999999999886 4 6777888888899999999999999988764 34 44567778888899999
Q ss_pred chhhhHHHHHHHHH
Q 045917 115 IGVGGSVHSLIFKV 128 (162)
Q Consensus 115 ~~~a~~i~~~~~~~ 128 (162)
+++|...++...+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887654
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.95 E-value=0.0091 Score=33.21 Aligned_cols=80 Identities=13% Similarity=-0.016 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y 144 (162)
..|..+-..+...|++++|...|++..+.. +.+...+..+-..+.+.|++++|...+....+.. +.+...+..+-.+|
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555566667777777777777765532 1234455666667777777777777777766643 22344555554444
Q ss_pred Hh
Q 045917 145 AA 146 (162)
Q Consensus 145 ~~ 146 (162)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.015 Score=42.91 Aligned_cols=144 Identities=9% Similarity=-0.077 Sum_probs=93.7
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC-hhHHHHHHHHHHc------------
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP-LFAYNTLIRAYAK------------ 76 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~------------ 76 (162)
++.++|.+.++...... +.++..+..+-..|. .|+.++|...|+... |+ ..+|..+-..|..
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35567777777765543 345566777888888 999999999999876 54 4445544333322
Q ss_pred -------CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchh--HHHHHHH-HHHh
Q 045917 77 -------TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY--IGNTLLR-MYAA 146 (162)
Q Consensus 77 -------~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~ll~-~y~~ 146 (162)
.+..++|...|++..... +.+..++..+-..+...|++++|...+....+....+... .+..+-. .+..
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 123456677777665432 3456678888999999999999999999887754332211 1222222 2346
Q ss_pred cCChhHHHHhhcc
Q 045917 147 CKEIDFAKALFDE 159 (162)
Q Consensus 147 ~g~~~~a~~~~~~ 159 (162)
.|+.++|...|.+
T Consensus 385 ~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 385 MKCEDKAIHHFIE 397 (472)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7899999887754
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.90 E-value=0.0047 Score=46.73 Aligned_cols=119 Identities=5% Similarity=-0.125 Sum_probs=86.8
Q ss_pred HHHhhchhhhcchhHHHHHhc---CCC----chhHHHHHHHhhC-CCChHHHHHHhhhhC-----------C-ChhHHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTS---LDH----NTYIISRFILTSL-PISLHFTRSLFNNVM-----------P-PLFAYNT 69 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----------~-~~~~~~~ 69 (162)
+...|+.++|+.++...+... +.+ ...+++.|-..|. .|++++|..++++.- | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345578889988887765422 223 2456788888999 999999999988763 2 2667999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHH---cCCCCCCcc----HHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLK---TGLRPDNLT----YPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~t----~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
+-..|...|++++|..++++-.+ .-+-||... .+.+-.++...+.+.+|+.++..+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988643 334444332 234445666678899999999888764
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.89 E-value=0.0097 Score=38.07 Aligned_cols=89 Identities=6% Similarity=-0.132 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCC--------C-----ccHHHHHHHhhhhccchhhhHHHHHHHHH-----hc
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPD--------N-----LTYPFVVKASDQCLLIGVGGSVHSLIFKV-----GL 130 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------~-----~t~~~li~~~~~~~~~~~a~~i~~~~~~~-----~~ 130 (162)
..=..+.+.|++++|...|++..+. .|+ . ..|+.+-.++.+.|++++|...++...+. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3334455667777777777776542 222 1 26777777788888888888888777664 01
Q ss_pred Cc-chhHH----HHHHHHHHhcCChhHHHHhhcc
Q 045917 131 HS-DKYIG----NTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 131 ~~-~~~~~----~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.| +...| ...=.++...|++++|...|++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 34 35566 7777888899999999988875
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.84 E-value=0.0055 Score=36.16 Aligned_cols=74 Identities=9% Similarity=0.008 Sum_probs=54.0
Q ss_pred hhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 18 HHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 18 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
.|...++...+.. +.++..+..+-..|. .|++++|...|+... | +...|..+-..|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555554432 235566777777777 999999999998876 3 466788888888889999999999888755
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0059 Score=35.38 Aligned_cols=84 Identities=8% Similarity=-0.046 Sum_probs=59.5
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC-------ccH
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-------LTY 102 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~t~ 102 (162)
...+..+-..+. .|++++|...|+... | +...|..+-..+.+.|++++|...|++..+ +.|+. ..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHHH
Confidence 445556666677 999999999999876 4 677888888899999999999999999875 34553 223
Q ss_pred HHHHHHhhhhccchhhhH
Q 045917 103 PFVVKASDQCLLIGVGGS 120 (162)
Q Consensus 103 ~~li~~~~~~~~~~~a~~ 120 (162)
..+-.++...|+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 334444445555555443
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.77 E-value=0.0039 Score=36.12 Aligned_cols=86 Identities=14% Similarity=0.019 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh-cCcchhHHHHHH
Q 045917 63 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG-LHSDKYIGNTLL 141 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~ll 141 (162)
+...|..+-..|...|++++|...|++..+..- -+...|..+-.++...|++++|...++...+.. -.++......+-
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 466788888889999999999999999876532 245567888899999999999999998876543 235566666666
Q ss_pred HHHHhcCC
Q 045917 142 RMYAACKE 149 (162)
Q Consensus 142 ~~y~~~g~ 149 (162)
..+.+.+.
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 66655443
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.71 E-value=0.014 Score=33.67 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=48.0
Q ss_pred chhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 34 NTYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 34 ~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
++..+..+-..|. .|++++|...|+... | +...|..+-..|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566677777777 999999999999876 4 467788888899999999999999988654
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.66 E-value=0.0042 Score=45.16 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHc--------------CCCC-CCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKT--------------GLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
..|..+=..+.+.|++++|...|++..+. ...| +...|..+-..+.+.|++++|...+....+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777778888999999999999987651 0222 34567778888999999999999999988753
Q ss_pred cCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 130 LHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 130 ~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+.+...+..+-.+|.+.|++++|.+.|++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 23577888899999999999999998875
No 191
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.59 E-value=0.011 Score=44.10 Aligned_cols=84 Identities=7% Similarity=-0.081 Sum_probs=63.1
Q ss_pred cCCCchHHHHHHHHHHH---cCCCCC----CccHHHHHHHhhhhccchhhhHHHHHHHHH-----h-cCcc-hhHHHHHH
Q 045917 76 KTSCSIESIKLFDEMLK---TGLRPD----NLTYPFVVKASDQCLLIGVGGSVHSLIFKV-----G-LHSD-KYIGNTLL 141 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~---~~~~p~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~-----~-~~~~-~~~~~~ll 141 (162)
..|++++|..++++..+ .-+-|+ ..+++.|...|...|++++|+.+++....- | -.|+ ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788999999988654 233444 255778889999999999999988876542 2 1344 45588899
Q ss_pred HHHHhcCChhHHHHhhcc
Q 045917 142 RMYAACKEIDFAKALFDE 159 (162)
Q Consensus 142 ~~y~~~g~~~~a~~~~~~ 159 (162)
..|...|++++|+.++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 999999999999998865
No 192
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.034 Score=43.92 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=58.9
Q ss_pred CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 47 PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
.|+++.|+++.+.+ .+...|..+-..+.+.|+++.|.+.|..+.+ |..+...+...++.+...++-+...
T Consensus 665 ~~~~~~A~~~~~~~-~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 665 VGQLTLARDLLTDE-SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HTCHHHHHHHHTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 57777777776554 4567888888899999999999999988754 3344444444555544444433333
Q ss_pred HHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 127 KVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 127 ~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
..| -++.-..+|.+.|++++|.+++.++
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 322 1233334455556666666555543
No 193
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.54 E-value=0.064 Score=40.55 Aligned_cols=147 Identities=8% Similarity=-0.036 Sum_probs=84.2
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhCCCChHHHHHHhhhh-----------C--CChhHHHHHHH
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSLPISLHFTRSLFNNV-----------M--PPLFAYNTLIR 72 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m-----------~--~~~~~~~~li~ 72 (162)
++..+...|+.+.|..++....+. +.+...+-......-.... ...+.+.. . .....|-..+.
T Consensus 219 ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 219 YSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHH--HHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 344455667888899999888877 3343333221111001111 11122111 1 12345666777
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCCccHH--HHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 73 AYAKTSCSIESIKLFDEMLKTGLRPDNLTYP--FVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
...+.++.+.|..+|... +.. ..+...|. +.++... .++.+.|..+++...+.- +-++..|...++...+.|+.
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 766778899999999888 221 11222232 2222221 236888999998887752 22345567778878888999
Q ss_pred hHHHHhhccc
Q 045917 151 DFAKALFDEM 160 (162)
Q Consensus 151 ~~a~~~~~~m 160 (162)
+.|..+|+..
T Consensus 371 ~~aR~l~er~ 380 (493)
T 2uy1_A 371 ENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 194
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.51 E-value=0.073 Score=37.72 Aligned_cols=145 Identities=10% Similarity=0.049 Sum_probs=99.9
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChH--HHHHHhhhhC----CChhHHHHHHHHHHcCCC------c
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLH--FTRSLFNNVM----PPLFAYNTLIRAYAKTSC------S 80 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~--~a~~~~~~m~----~~~~~~~~li~~~~~~~~------~ 80 (162)
++.+++..+++.+.... +-+-.+|+----.+. .|..+ ++...++.+- .|...|+---..+.+.++ +
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 56777788888877643 345556655544455 66666 8888888776 678888877777777776 8
Q ss_pred hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc-chhhhHHHHHHHHHh--cCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL-IGVGGSVHSLIFKVG--LHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-~~~a~~i~~~~~~~~--~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
+++++.+++...... -|...|+-+-..+.+.|+ .+.+..+...+...+ -..+...+..+.+.|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 888999888876432 355556655555555555 344555555544433 1346788899999999999999999998
Q ss_pred ccc
Q 045917 158 DEM 160 (162)
Q Consensus 158 ~~m 160 (162)
+..
T Consensus 282 ~~l 284 (306)
T 3dra_A 282 DLL 284 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.46 E-value=0.023 Score=42.27 Aligned_cols=89 Identities=7% Similarity=-0.133 Sum_probs=67.5
Q ss_pred HHHHHcCCCchHHHHHHHHHHHc--C-CCCC----CccHHHHHHHhhhhccchhhhHHHHHHHHH-----h-cCcc-hhH
Q 045917 71 IRAYAKTSCSIESIKLFDEMLKT--G-LRPD----NLTYPFVVKASDQCLLIGVGGSVHSLIFKV-----G-LHSD-KYI 136 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~--~-~~p~----~~t~~~li~~~~~~~~~~~a~~i~~~~~~~-----~-~~~~-~~~ 136 (162)
+..+.+.|++++|..++++..+. . +.|+ ..+++.+...|...|++++|+.++.....- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566789999999999988653 2 3333 235777888999999999999998876542 1 1343 456
Q ss_pred HHHHHHHHHhcCChhHHHHhhcc
Q 045917 137 GNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 137 ~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
++.|-..|...|++++|+.++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 88899999999999999998865
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.41 E-value=0.06 Score=40.01 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=70.7
Q ss_pred ChHHHHHHhhhhC-CChhHHHHHHHHHHcCC---CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh----ccchhhhH
Q 045917 49 SLHFTRSLFNNVM-PPLFAYNTLIRAYAKTS---CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC----LLIGVGGS 120 (162)
Q Consensus 49 ~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~----~~~~~a~~ 120 (162)
..+.+..+++... .+...+..+-..|...| +.++|++.|++-.+.|- ++...+..+-..|... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4555555666655 44447777777888888 88899999988877653 3333334455555444 57888888
Q ss_pred HHHHHHHHhcCcchhHHHHHHHH-H--HhcCChhHHHHhhcc
Q 045917 121 VHSLIFKVGLHSDKYIGNTLLRM-Y--AACKEIDFAKALFDE 159 (162)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~ll~~-y--~~~g~~~~a~~~~~~ 159 (162)
.++... .| +...+..|=.. | ...|+.++|.+.|++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 887776 43 44555555555 3 458899999888764
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.33 E-value=0.016 Score=35.72 Aligned_cols=109 Identities=8% Similarity=-0.102 Sum_probs=76.8
Q ss_pred hchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC--CChhHHHHHHHHHHc----CCCchHHHHH
Q 045917 14 KTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM--PPLFAYNTLIRAYAK----TSCSIESIKL 86 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~----~~~~~~a~~~ 86 (162)
++.++|.+.+....+.|. +.. . |=..|. .+..++|...|+..- -+...+..+=..|.. .++.++|...
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 467778888888877772 222 2 444555 667788888888776 666777777777776 7888899998
Q ss_pred HHHHHHcCCCCCCccHHHHHHHhhh----hccchhhhHHHHHHHHHhc
Q 045917 87 FDEMLKTGLRPDNLTYPFVVKASDQ----CLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 87 ~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~~a~~i~~~~~~~~~ 130 (162)
|++-.+.| +...+..|-..|.. .++.++|...++...+.|.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88887764 34555666666665 6778888888877777664
No 198
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.20 E-value=0.077 Score=33.12 Aligned_cols=82 Identities=13% Similarity=-0.059 Sum_probs=49.2
Q ss_pred HHhhchhhhcchhHHHHHh--------c---------CCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHH
Q 045917 11 QLSKTAHHHHQLPALFLKT--------S---------LDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYN 68 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~ 68 (162)
-..|++++|...|...... . -+.+...|..+-.+|. .|++++|...++... .+...|.
T Consensus 22 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 101 (162)
T 3rkv_A 22 FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALF 101 (162)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHH
Confidence 3445666777666666543 0 0112244555555555 777777777776654 3455666
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHH
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
.+-.+|...|++++|...|++..+
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh
Confidence 666677777777777777776654
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.10 E-value=0.11 Score=31.86 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=79.6
Q ss_pred CCChHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhh----hccchhhhH
Q 045917 47 PISLHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQ----CLLIGVGGS 120 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~~a~~ 120 (162)
.++.++|...|+..- -+.... +=..|...+.+++|.+.|++-.+.| +......|-..|.. .++.++|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 456788888888776 333344 4455556678888999999987764 45566666666666 788999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHh----cCChhHHHHhhcc
Q 045917 121 VHSLIFKVGLHSDKYIGNTLLRMYAA----CKEIDFAKALFDE 159 (162)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~ll~~y~~----~g~~~~a~~~~~~ 159 (162)
.++...+.| +...+..|=..|.. .++.++|.+.|++
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 999988775 46777888888888 8999999998864
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.08 E-value=0.037 Score=30.56 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=48.4
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
...+..+-..+. .|++++|...|+... | +...|..+-..+.+.|++++|...|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445666666777 999999999999875 3 5677888888999999999999999998764
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.40 E-value=0.025 Score=42.09 Aligned_cols=61 Identities=5% Similarity=-0.152 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHc---CCCCC----CccHHHHHHHhhhhccchhhhHHHHHH
Q 045917 65 FAYNTLIRAYAKTSCSIESIKLFDEMLKT---GLRPD----NLTYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
.+++.+-..|...|++++|..++++..+- -..|+ ..+++.|-..|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44555555555555555555555554321 11121 223455555555556666665555443
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.40 E-value=0.16 Score=32.42 Aligned_cols=82 Identities=15% Similarity=-0.012 Sum_probs=63.2
Q ss_pred CCChHHHHHHhhhhC---CC-------------hhHHHHHHHHHHcCCCchHHHHHHHHHHHc-----CCCCCC-ccH--
Q 045917 47 PISLHFTRSLFNNVM---PP-------------LFAYNTLIRAYAKTSCSIESIKLFDEMLKT-----GLRPDN-LTY-- 102 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~-~t~-- 102 (162)
.|++++|...|+..- |+ ...|+..=.++.+.|++++|+..+++-.+. .+.|+. ..|
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 688888888888765 54 227888888999999999999999987663 235643 345
Q ss_pred --HHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 103 --PFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 103 --~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
...-.++...|++++|...++...+.
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56667888889999999999887664
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.30 E-value=0.054 Score=30.64 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=34.6
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCC-Cc-cHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 73 AYAKTSCSIESIKLFDEMLKTGLRPD-NL-TYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
.+.+.|++++|...|++..+. .|+ .. .+..+-..+...|++++|...+....+..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445567777777777776553 233 23 55556666667777777777777766653
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.72 E-value=0.11 Score=29.34 Aligned_cols=54 Identities=9% Similarity=-0.110 Sum_probs=44.5
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHhcCcchh-HHHHHHHHHHhcCChhHHHHhhcc
Q 045917 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKY-IGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 105 li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~-~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
....+.+.|++++|...+....+.. +.+.. .+..+-.+|.+.|++++|.+.|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455678899999999999988764 23556 888888999999999999999875
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.68 E-value=0.058 Score=40.07 Aligned_cols=80 Identities=9% Similarity=-0.047 Sum_probs=52.7
Q ss_pred CCChHHHHHHhhhhC--------C----ChhHHHHHHHHHHcCCCchHHHHHHHHHHHc---CCCCC----CccHHHHHH
Q 045917 47 PISLHFTRSLFNNVM--------P----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKT---GLRPD----NLTYPFVVK 107 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~--------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~t~~~li~ 107 (162)
.|++++|..+++..- | ...+++.+...|...|++++|+.++++..+- -..|+ ..+++.|-.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 566777777665442 1 2456777888888888888888888776432 12222 234666777
Q ss_pred HhhhhccchhhhHHHHHHH
Q 045917 108 ASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 108 ~~~~~~~~~~a~~i~~~~~ 126 (162)
.|...|++++|+.++.+..
T Consensus 380 ~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 7888888888888776653
No 206
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.47 E-value=0.23 Score=37.55 Aligned_cols=107 Identities=7% Similarity=0.001 Sum_probs=52.9
Q ss_pred hhchhhhcchhHHHHHhcCCCchhHHH--HHHHhhCCCChHHHHHHhhhhC---CC-hhHHHHHHHHHHcCCCchHHHHH
Q 045917 13 SKTAHHHHQLPALFLKTSLDHNTYIIS--RFILTSLPISLHFTRSLFNNVM---PP-LFAYNTLIRAYAKTSCSIESIKL 86 (162)
Q Consensus 13 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~a~~~~~~m~---~~-~~~~~~li~~~~~~~~~~~a~~~ 86 (162)
.++.+.|+.+++.. +.. ..+...|. +.+.....++.+.|..+|+... |+ ...|...+....+.|+.+.|..+
T Consensus 299 ~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556666666655 211 11222232 2222222235666666666554 32 33344455555556666666666
Q ss_pred HHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 87 FDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 87 ~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
|.... -....|...++.-...|+.+.+.++++...
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66651 123345555555555566666666555544
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.25 E-value=0.19 Score=31.78 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=32.2
Q ss_pred CChhHHHHHHHHHHcCC---CchHHHHHHHHHHHcCCCC--CCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTS---CSIESIKLFDEMLKTGLRP--DNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
++..+.-.+-.++++++ +.+++..++++..+.+ .| +...+-.+--++.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34444444444555555 4445666666655443 12 1222233344445666666666666665554
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.83 E-value=1.2 Score=35.10 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 32 DHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 32 ~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
..++..|..+=..+. .++++.|++.|..+. -|..+...|...|+.+....+-+.....| -++.....+.
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~~----d~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~ 747 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNAH----DLESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYW 747 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----CHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc----ChhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHH
Confidence 356788999999999 999999999999987 23334444444555555444444333322 1334444455
Q ss_pred hhccchhhhHHHHH
Q 045917 111 QCLLIGVGGSVHSL 124 (162)
Q Consensus 111 ~~~~~~~a~~i~~~ 124 (162)
+.|++++|.+++.+
T Consensus 748 ~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 748 IAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555555543
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.60 E-value=0.54 Score=29.45 Aligned_cols=83 Identities=10% Similarity=-0.186 Sum_probs=54.6
Q ss_pred CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 47 PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
+|++..+..-+-.+..+..-.+..+......|+-++-.+++.++.. ..+|+....-.+..+|.+.|+..++.++..+.-
T Consensus 74 C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 74 CQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp CSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 5666666666655555555566667777777777777777777532 344555556666777777777777777777777
Q ss_pred HHhc
Q 045917 127 KVGL 130 (162)
Q Consensus 127 ~~~~ 130 (162)
++|+
T Consensus 153 ~kG~ 156 (172)
T 1wy6_A 153 KKGE 156 (172)
T ss_dssp HTTC
T ss_pred Hhhh
Confidence 7765
No 210
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.44 E-value=0.31 Score=28.61 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
+.++.+....+.|++....+.+++|.+.+++..|.++++.++.
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333334445555555555555555555555555555554443
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.02 E-value=1.1 Score=34.56 Aligned_cols=128 Identities=5% Similarity=-0.042 Sum_probs=83.6
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCC----------hHHHHHHhhhhC----CChhHHHHHHHHHHcCC--
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL-PIS----------LHFTRSLFNNVM----PPLFAYNTLIRAYAKTS-- 78 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~----------~~~a~~~~~~m~----~~~~~~~~li~~~~~~~-- 78 (162)
.++|.+.++.+...+.. +...|+.-=..+. .|+ ++++...++.+- .+..+|+.--..+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 35667777777665432 2233443333333 344 788888888876 56788888888888888
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc-cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL-LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
+++++++.++++.+... -|...|+.---...+.| ..+++.+.+..+.+... -|...|+..-..+.+
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 66999999999987542 25555655545555666 66777777777666543 467777766666555
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.72 E-value=0.45 Score=27.46 Aligned_cols=56 Identities=7% Similarity=-0.142 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcC------CCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 67 YNTLIRAYAKTSCSIESIKLFDEMLKTG------LRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
+-.+=..+.+.|++..|...|++..+.- -.+....+..+-.++.+.|+++.|...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344455666777777777777654321 1123334555556666666666665544
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.56 E-value=1 Score=28.19 Aligned_cols=59 Identities=10% Similarity=-0.153 Sum_probs=40.0
Q ss_pred ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 100 LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 100 ~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.-+...++.....|.-++-.++...+.. +.+|++...-.+-.+|.+.|+..+|.+++.+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3344556666777777777777777544 3456777777788888888888887777643
No 214
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.50 E-value=3.4 Score=33.08 Aligned_cols=124 Identities=14% Similarity=0.067 Sum_probs=77.3
Q ss_pred HHHHHHHhhC-CCC-hHHHHHHhhhhC---CChhH--HHHHHHHHHcCC-CchHHHHHHHHHHH------cCCCCCCccH
Q 045917 37 IISRFILTSL-PIS-LHFTRSLFNNVM---PPLFA--YNTLIRAYAKTS-CSIESIKLFDEMLK------TGLRPDNLTY 102 (162)
Q Consensus 37 ~~~~ll~~~~-~~~-~~~a~~~~~~m~---~~~~~--~~~li~~~~~~~-~~~~a~~~~~~m~~------~~~~p~~~t~ 102 (162)
....|++.+. .++ .+.|..+|+.+. |.... ..++|....+.+ +--+|..+..+..+ ....+.....
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3456666666 666 577999999887 43222 233344333332 22335555554432 1233322111
Q ss_pred -------HHH----HHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 103 -------PFV----VKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 103 -------~~l----i~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
..| .+.|...|+++.|.++-......- +-+-.+|-.|..+|.+.|+++.|+-.++-+|
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112 345666789999999888876652 3347889999999999999999999988876
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.41 E-value=2 Score=30.27 Aligned_cols=93 Identities=11% Similarity=-0.010 Sum_probs=68.2
Q ss_pred hHHHHHHhhhhC---CC---hhHHHHHHHHHHcC-----CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhh-ccchh
Q 045917 50 LHFTRSLFNNVM---PP---LFAYNTLIRAYAKT-----SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQC-LLIGV 117 (162)
Q Consensus 50 ~~~a~~~~~~m~---~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-~~~~~ 117 (162)
...|...+++.. |+ -..|..+-..|.+. |+.++|...|++-.+.+-.-+..+...+-+.++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344555555444 55 56899999999995 99999999999987743222466777788888885 99999
Q ss_pred hhHHHHHHHHHhcC--cchhHHHHHHH
Q 045917 118 GGSVHSLIFKVGLH--SDKYIGNTLLR 142 (162)
Q Consensus 118 a~~i~~~~~~~~~~--~~~~~~~~ll~ 142 (162)
+.+.++........ |+....+.+-+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 99999999887665 66655554443
No 216
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.11 E-value=0.22 Score=31.72 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=43.7
Q ss_pred HhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCC----------hHHHHHHhhhhC---C-ChhHHHHHHHHHHc
Q 045917 12 LSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PIS----------LHFTRSLFNNVM---P-PLFAYNTLIRAYAK 76 (162)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~----------~~~a~~~~~~m~---~-~~~~~~~li~~~~~ 76 (162)
+.+.+++|...++...... +.++..|+.+=..+. .++ +++|...|++.. | +...|..+=++|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3345556666665555443 223334443333333 332 346666666554 3 34455555555554
Q ss_pred C-----------CCchHHHHHHHHHHHcCCCCCCccH
Q 045917 77 T-----------SCSIESIKLFDEMLKTGLRPDNLTY 102 (162)
Q Consensus 77 ~-----------~~~~~a~~~~~~m~~~~~~p~~~t~ 102 (162)
. |++++|...|++..+ +.|+...|
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHH
Confidence 4 256666666666544 34554444
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.03 E-value=2.6 Score=30.70 Aligned_cols=129 Identities=12% Similarity=-0.020 Sum_probs=78.5
Q ss_pred hcCCCchhHHHHHHHhhC---CC---ChHHHHHHhhhhC---CC-hhHHHHHHHHHHc----CC-CchHHHHHHHHHHH-
Q 045917 29 TSLDHNTYIISRFILTSL---PI---SLHFTRSLFNNVM---PP-LFAYNTLIRAYAK----TS-CSIESIKLFDEMLK- 92 (162)
Q Consensus 29 ~~~~~~~~~~~~ll~~~~---~~---~~~~a~~~~~~m~---~~-~~~~~~li~~~~~----~~-~~~~a~~~~~~m~~- 92 (162)
.+.+.++..|...+++.. .+ ...+|..+|++.. |+ ...|..+--+|.. .+ .......+-..+..
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445667777888777665 33 3577888888876 54 3344433223321 11 11122222222221
Q ss_pred ---cCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 93 ---TGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 93 ---~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..-..+..++..+--.+...|++++|...++.....+ |+...|..+=..+.-.|++++|.+.|++
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1224456666666556666789999999998888875 6777776666778889999999887753
No 218
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=91.90 E-value=2.4 Score=29.93 Aligned_cols=33 Identities=9% Similarity=-0.166 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC
Q 045917 116 GVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 116 ~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~ 149 (162)
+++.+.+....... +-|...|+.+-..+.+.|+
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 33334444444433 2344555555555555555
No 219
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.60 E-value=0.52 Score=34.44 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=41.9
Q ss_pred HHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHH-----cCCCCCCccH
Q 045917 41 FILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK-----TGLRPDNLTY 102 (162)
Q Consensus 41 ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~ 102 (162)
+...+. .|+.+++...+.... .+-..|-.+|.++.+.|+..+|++.|++..+ .|+.|+..+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 334445 777777776666554 3556778888888888888888888877533 3777766543
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.52 E-value=0.59 Score=26.60 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHcCCC---chHHHHHHHHHHHcCCCCCC-ccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 63 PLFAYNTLIRAYAKTSC---SIESIKLFDEMLKTGLRPDN-LTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 63 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
+...+..+-.++...++ .++|..++++..+ +.|+. .....+-..+.+.|++++|...++.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34445555555543433 6888888888766 33443 334445577778888999999888887753
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.40 E-value=1.2 Score=32.52 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=54.6
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
.+...|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|+.++|...+....+..
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 567788887777777899999999999998875 777666666777788999999999998877764
No 222
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.15 E-value=1.2 Score=28.36 Aligned_cols=95 Identities=15% Similarity=0.023 Sum_probs=64.5
Q ss_pred CChHHHHHHhhhhC----CChhHHHHHHHHHHcCCC----------chHHHHHHHHHHHcCCCCC-CccHHHHHHHhhhh
Q 045917 48 ISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSC----------SIESIKLFDEMLKTGLRPD-NLTYPFVVKASDQC 112 (162)
Q Consensus 48 ~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~ 112 (162)
+.+++|...++... .+...|+.+=.++...++ +++|...|++..+ +.|+ ..+|..+=.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHh
Confidence 34667777777665 356666655556665554 4588888888765 4454 45677788888776
Q ss_pred c-----------cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHh
Q 045917 113 L-----------LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAA 146 (162)
Q Consensus 113 ~-----------~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~ 146 (162)
| ++++|.+.++...+. .|+-..|..-+...-+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 4 899999999888875 5777777666655433
No 223
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.05 E-value=0.79 Score=28.43 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHH
Q 045917 83 SIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLR 142 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~ 142 (162)
..+-++.+...++.|+.....+.+++|-+.+++..|..+++-++.+ +.+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3444555555677888888888888888888888888887776654 3344555666654
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.68 E-value=2.3 Score=27.53 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=51.4
Q ss_pred HHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHH
Q 045917 10 IQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFD 88 (162)
Q Consensus 10 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (162)
--.+|+++.|.++-+.+ -+...|..|=+... .|+++-|++.|.... -|..+.-.|.-.|+.++...+-+
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----SFDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----CHHHHHHHHHHhCCHHHHHHHHH
Confidence 34456666666654443 24556666666666 677777766666655 33333334444455544433322
Q ss_pred HHHHcCCCCCCccHHHHHHHhhhhccchhhhHHH
Q 045917 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVH 122 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~ 122 (162)
.-...| -++..+..+.-.|+++++.+++
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 222221 2455555556666666666655
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.64 E-value=2.1 Score=27.09 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=51.5
Q ss_pred CChhHHHHHHHHHHcCCCc------hHHHHHHHHHHHcCCCCCC-ccHHHHHH------HhhhhccchhhhHHHHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCS------IESIKLFDEMLKTGLRPDN-LTYPFVVK------ASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~-~t~~~li~------~~~~~~~~~~a~~i~~~~~~~ 128 (162)
.|..+|=..+...-+.|++ ++..++|.+-.. .++|+. ..|...|. .+...++.+.|+++|..+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455666666666666776 666666665543 244432 11111111 111236677777777777654
Q ss_pred hcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 129 GLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 129 ~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.+.=..+|-..-..=.+.|++..|.+++.
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 22225555555555566777777777654
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.57 E-value=1.4 Score=24.94 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=49.9
Q ss_pred CchhHHHHHHHhhC-C---CChHHHHHHhhhhC---C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHH
Q 045917 33 HNTYIISRFILTSL-P---ISLHFTRSLFNNVM---P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPF 104 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~---~~~~~a~~~~~~m~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 104 (162)
.++..+..+-..+. . ...++|..++++.- | +..+...+=..+.+.|++++|...|+++.+.. |+......
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~~~~ 81 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLDRVT 81 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHHH
Confidence 34444544444443 2 23789999999886 4 46666667778888999999999999998753 33333444
Q ss_pred HHHHh
Q 045917 105 VVKAS 109 (162)
Q Consensus 105 li~~~ 109 (162)
+....
T Consensus 82 i~~~I 86 (93)
T 3bee_A 82 IIESI 86 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 227
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.53 E-value=1.6 Score=25.52 Aligned_cols=74 Identities=8% Similarity=-0.044 Sum_probs=54.5
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
+-++|..|-+++...+. .-...+|+..+ .|++++|..+.+... ||..+|-++-. .+.|-.+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 56788888888887765 23455555555 999999999999998 99999988844 5667766666666566
Q ss_pred HHcC
Q 045917 91 LKTG 94 (162)
Q Consensus 91 ~~~~ 94 (162)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 5554
No 228
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.34 E-value=1.7 Score=25.47 Aligned_cols=74 Identities=8% Similarity=-0.035 Sum_probs=52.7
Q ss_pred chhhhcchhHHHHHhcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHH
Q 045917 15 TAHHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEM 90 (162)
Q Consensus 15 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (162)
+-++|..|-+++...+. .-...+|+..+ .|++++|..+.+... ||..+|-++-. .+.|-.+++..-+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 56788888888877765 22445555555 899999999999988 99999988844 4556666665555566
Q ss_pred HHcC
Q 045917 91 LKTG 94 (162)
Q Consensus 91 ~~~~ 94 (162)
..+|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 5443
No 229
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=89.68 E-value=4.4 Score=29.23 Aligned_cols=147 Identities=7% Similarity=-0.002 Sum_probs=96.0
Q ss_pred HHHHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CC-ChHHHHHHhhhhC----CChhHHHHHHHHHHcC-C-Cc
Q 045917 9 LIQLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PI-SLHFTRSLFNNVM----PPLFAYNTLIRAYAKT-S-CS 80 (162)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~-~~~~a~~~~~~m~----~~~~~~~~li~~~~~~-~-~~ 80 (162)
++.+....++|.++.+.+...+.. +..+|+.-=..+. .+ .++++...++.+- .+...|+.--..+.+. + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 333444556788888888766432 3345565555555 66 5999999999886 5677788876666665 6 88
Q ss_pred hHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccch--------hhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC---
Q 045917 81 IESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG--------VGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE--- 149 (162)
Q Consensus 81 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~--------~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~--- 149 (162)
++++++++.+.+.. +-|...|+----...+.+.++ ++.+....+.+... -|-..|+.--..+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 99999999997532 224444544333444445555 77777777777653 477788777777777665
Q ss_pred ----hhHHHHhhc
Q 045917 150 ----IDFAKALFD 158 (162)
Q Consensus 150 ----~~~a~~~~~ 158 (162)
++++.+.++
T Consensus 220 ~~~~~~eELe~~~ 232 (349)
T 3q7a_A 220 SSRSLQDELIYIL 232 (349)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 456655543
No 230
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=89.48 E-value=5.3 Score=30.71 Aligned_cols=134 Identities=7% Similarity=-0.035 Sum_probs=91.6
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CC--ChHHHHHHhhhhC----CChhHHHHHHHHHHcCC-CchHHHHHH
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL-PI--SLHFTRSLFNNVM----PPLFAYNTLIRAYAKTS-CSIESIKLF 87 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~--~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~-~~~~a~~~~ 87 (162)
++++...++.+.+.. +-+..+|+----.+. .+ +++++...++.+- .+..+|+---..+.+.| ..+++++.+
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 677888888877654 334555655444455 66 6799999999886 67889998888888888 889999998
Q ss_pred HHHHHcCCCCCCccHHHHHHHhhhh--------------ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhH
Q 045917 88 DEMLKTGLRPDNLTYPFVVKASDQC--------------LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDF 152 (162)
Q Consensus 88 ~~m~~~~~~p~~~t~~~li~~~~~~--------------~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~ 152 (162)
+++.+... -|...|+..-..+.+. +.++++.+.+....... +-|...|..+-..+.+.++.++
T Consensus 168 ~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 168 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 88865432 3445555544444432 45677777777766653 3467888887777777776444
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.99 E-value=3 Score=26.30 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=10.0
Q ss_pred HcCCCchHHHHHHHHHHH
Q 045917 75 AKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~ 92 (162)
.+.|++++|.+.++...+
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHh
Confidence 555555555555555544
No 232
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.86 E-value=5.8 Score=28.34 Aligned_cols=142 Identities=7% Similarity=-0.038 Sum_probs=91.9
Q ss_pred hhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CC--ChHHHHHHhhhhC----CChhHHHHHHHHHHcCCC-chHHHHHH
Q 045917 16 AHHHHQLPALFLKTSLDHNTYIISRFILTSL-PI--SLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSC-SIESIKLF 87 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~--~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~-~~~a~~~~ 87 (162)
++++..+++.+.... +-+..+|+----.+. .+ .++++...++.+- .|..+|+---....+.|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456677777776543 345556655554555 45 5889999998886 688889888777778888 48999999
Q ss_pred HHHHHcCCCCCCccHHHHHHHhhhh--------------ccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc------
Q 045917 88 DEMLKTGLRPDNLTYPFVVKASDQC--------------LLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC------ 147 (162)
Q Consensus 88 ~~m~~~~~~p~~~t~~~li~~~~~~--------------~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~------ 147 (162)
+++.+... -|...|+..-....+. +.++++.+.+....... +-|...|+.+--.+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 99987543 3555565544444333 34566666666666553 34677777665555554
Q ss_pred -----CChhHHHHhhccc
Q 045917 148 -----KEIDFAKALFDEM 160 (162)
Q Consensus 148 -----g~~~~a~~~~~~m 160 (162)
+.++++.+.++++
T Consensus 247 ~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 247 SVEKSTVLQSELESCKEL 264 (331)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 3456666655543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.28 E-value=4.4 Score=26.24 Aligned_cols=73 Identities=4% Similarity=-0.096 Sum_probs=52.9
Q ss_pred CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHH
Q 045917 47 PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
.|+++.|.++.++. .+...|..+=......|+++-|.+.|....+ |..+.--|.-.|+.+...++-+...
T Consensus 18 lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp TTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 79999999998766 4677899999999999999999999998753 4444444555666655555444433
Q ss_pred HHh
Q 045917 127 KVG 129 (162)
Q Consensus 127 ~~~ 129 (162)
..|
T Consensus 88 ~~g 90 (177)
T 3mkq_B 88 TRE 90 (177)
T ss_dssp HTT
T ss_pred HCc
Confidence 333
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.23 E-value=0.97 Score=27.57 Aligned_cols=23 Identities=0% Similarity=-0.233 Sum_probs=11.8
Q ss_pred HHHhhhhccchhhhHHHHHHHHH
Q 045917 106 VKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
--++.+.|+++.|.+.++.+.+.
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444555555555555555543
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.68 E-value=2.7 Score=24.06 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=50.4
Q ss_pred CchhHHHHHHHhhC-CCChHHHHHHhhhhC-----------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc
Q 045917 33 HNTYIISRFILTSL-PISLHFTRSLFNNVM-----------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL 100 (162)
Q Consensus 33 ~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 100 (162)
.++..+-.|=..+. .+++..|...|+... +....+..+-.++.+.|+++.|...+++..+ +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 34445556666667 999999999888754 2355688888999999999999999999876 566653
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.63 E-value=1.7 Score=31.67 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHH---cCCCchHHHHHHHHHHHc--C-CCCCC--ccH----------------HHHHHHhhhhccchhh
Q 045917 63 PLFAYNTLIRAYA---KTSCSIESIKLFDEMLKT--G-LRPDN--LTY----------------PFVVKASDQCLLIGVG 118 (162)
Q Consensus 63 ~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~--~-~~p~~--~t~----------------~~li~~~~~~~~~~~a 118 (162)
|...|..++.... ..|+.+.+.+.+++.... | .-++. ..| ..+++.+...|+.+++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4555666655433 347777777777776543 2 22221 111 1233444556777777
Q ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 119 GSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 119 ~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
......+.... +.+...|..||.+|.+.|+..+|.+.|++.
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76666665442 446778888999999999999998888753
No 237
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=85.33 E-value=4.5 Score=24.56 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=45.4
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CC---hhHHHHHHHHHHcCCC--chHHHHHHHHHHHcCCCCCC
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PP---LFAYNTLIRAYAKTSC--SIESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 99 (162)
.+.+++-|. .|+.++|.+-++++. |. .....++..+.-+.++ -+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 477889999 999999999999998 53 3445666666666542 35677888888877655443
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.07 E-value=3 Score=24.45 Aligned_cols=47 Identities=15% Similarity=0.344 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHh
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKAS 109 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 109 (162)
|++....+.+.+|-+.+++.-|.+++.-.+.+ +.+...+|..+++-.
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 77777888888888888888888888777654 334455677777654
No 239
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.56 E-value=6.8 Score=25.94 Aligned_cols=85 Identities=11% Similarity=-0.007 Sum_probs=56.7
Q ss_pred HHHHHHhhhhC--CChh----HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHH
Q 045917 51 HFTRSLFNNVM--PPLF----AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHS 123 (162)
Q Consensus 51 ~~a~~~~~~m~--~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~ 123 (162)
+.+.+.|...+ .+-. .|-..+..+ ..+...++.++|..|...||-..... |......+...|++.+|..|+.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554 3322 233333332 13446799999999999988665444 5677778888899999999999
Q ss_pred HHHHHhcCcchhH
Q 045917 124 LIFKVGLHSDKYI 136 (162)
Q Consensus 124 ~~~~~~~~~~~~~ 136 (162)
.-.+.+-+|-...
T Consensus 140 ~GI~~~A~P~~rL 152 (202)
T 3esl_A 140 LGAENNCRPYNRL 152 (202)
T ss_dssp HHHHTTCBSHHHH
T ss_pred HHHHcCCccHHHH
Confidence 8888777775433
No 240
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=84.41 E-value=2.7 Score=26.47 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CC---hhHHHHHHHHHHcCCC--chHHHHHHHHHHHcCCCCCCcc---HHHHHH
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PP---LFAYNTLIRAYAKTSC--SIESIKLFDEMLKTGLRPDNLT---YPFVVK 107 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t---~~~li~ 107 (162)
.+.+++-|. .|+.++|.+-++++. |. .....++..++-+.++ -+.+..++..+...++.+.... |..+++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~ 91 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 91 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 578899999 999999999999998 53 4455666666666432 4567788888887766554433 222233
Q ss_pred Hhhhhc-cchhhhHHHHHHHH
Q 045917 108 ASDQCL-LIGVGGSVHSLIFK 127 (162)
Q Consensus 108 ~~~~~~-~~~~a~~i~~~~~~ 127 (162)
.+-... +...|..++..+..
T Consensus 92 ~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 92 EIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp HHHHHHHHSTTHHHHHHHHHH
T ss_pred hChHhccCccchHHHHHHHHH
Confidence 322222 34455555544433
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.75 E-value=6.6 Score=25.15 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 133 DKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 133 ~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
+..+---+-.||.+.|++++|..+++.+|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33444457789999999999999998775
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=82.68 E-value=4 Score=28.80 Aligned_cols=109 Identities=6% Similarity=-0.076 Sum_probs=70.8
Q ss_pred ChHHHHHHhhhhC---CChhHHHHHHHHH-HcC--CCc------hHHHHHHHHHHHcCCCCC---CccHHHHHHHhhh--
Q 045917 49 SLHFTRSLFNNVM---PPLFAYNTLIRAY-AKT--SCS------IESIKLFDEMLKTGLRPD---NLTYPFVVKASDQ-- 111 (162)
Q Consensus 49 ~~~~a~~~~~~m~---~~~~~~~~li~~~-~~~--~~~------~~a~~~~~~m~~~~~~p~---~~t~~~li~~~~~-- 111 (162)
+.......+.+.. +....|..++.+- +.. |++ +.|..++++.. .+.|+ -..|..+-..|.+
T Consensus 136 ~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl--eLDP~~~~GsA~~~LG~lY~~vP 213 (301)
T 3u64_A 136 DEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC--DLWPSYQEGAVWNVLTKFYAAAP 213 (301)
T ss_dssp CHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH--HHCTTHHHHHHHHHHHHHHHHSC
T ss_pred chhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHhCC
Confidence 3344444555554 4455677666543 332 332 33333333333 34565 3467778888888
Q ss_pred ---hccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc-CChhHHHHhhcc
Q 045917 112 ---CLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC-KEIDFAKALFDE 159 (162)
Q Consensus 112 ---~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~-g~~~~a~~~~~~ 159 (162)
.|+.++|++.|++..+.+-.-+..++...-+.|+.. |+.+.+.+.+++
T Consensus 214 p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 214 ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 499999999999998865322477778888888884 999999998865
No 243
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=81.41 E-value=13 Score=26.83 Aligned_cols=137 Identities=9% Similarity=-0.091 Sum_probs=90.0
Q ss_pred HHhh-chhhhcchhHHHHHhcCCCchhHHHHHHHhhC-C-C-ChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCch-
Q 045917 11 QLSK-TAHHHHQLPALFLKTSLDHNTYIISRFILTSL-P-I-SLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSI- 81 (162)
Q Consensus 11 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~-~-~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~- 81 (162)
...+ .++++..+++.+.... +-+..+|+----.+. . + +.+++..+++.+- .|..+|+---..+.+.|..+
T Consensus 99 ~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 99 TSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc
Confidence 3345 4778888888877544 334556665555555 3 6 8889999999887 57778877555555555555
Q ss_pred -------HHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc-------chhhhHHHHHHHHHhcCcchhHHHHHHHHHHhc
Q 045917 82 -------ESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL-------IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 82 -------~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-------~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~ 147 (162)
++++.++++.+... -|...|+.--....+.+. ++++.+......... +-|...|+.+-..+.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 89999999987543 355566665555555554 456666666666543 34678888777777776
Q ss_pred CCh
Q 045917 148 KEI 150 (162)
Q Consensus 148 g~~ 150 (162)
|+.
T Consensus 256 ~~~ 258 (349)
T 3q7a_A 256 SLP 258 (349)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.00 E-value=6.8 Score=24.84 Aligned_cols=58 Identities=3% Similarity=-0.149 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhH
Q 045917 78 SCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI 136 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 136 (162)
+++++|.++|+.++...-.. .-.|....+.-.+.|++..|++++......+..|....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 78999999999987642222 44455555666678999999999999888776554433
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.38 E-value=7.8 Score=28.63 Aligned_cols=94 Identities=12% Similarity=-0.083 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC--CCccHHHHHHHhhhhccchhhhHHHHHHHHHhc-CcchhHHHHHH-
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP--DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL-HSDKYIGNTLL- 141 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~ll- 141 (162)
++..+-..|.+.|+.+.|.+.|.++...-..+ -...+-..++.+...+++..+......+..... .+|....+.+-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56677888888999999999999987653322 233455567788888899988888877755322 12222221111
Q ss_pred ---HHHHhcCChhHHHHhhcc
Q 045917 142 ---RMYAACKEIDFAKALFDE 159 (162)
Q Consensus 142 ---~~y~~~g~~~~a~~~~~~ 159 (162)
..+...+++..|-+.|-+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHH
Confidence 112356777777776643
No 246
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=79.82 E-value=12 Score=25.38 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=39.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHc--CCCC----CCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHH
Q 045917 71 IRAYAKTSCSIESIKLFDEMLKT--GLRP----DNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY 144 (162)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y 144 (162)
+..+....++++|.++.++.... ++++ +.......++.-.....-.-+..+...+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 44555556666666666554321 2221 111222223333333333333334333322 33445555666666
Q ss_pred HhcCChhHHHHhh
Q 045917 145 AACKEIDFAKALF 157 (162)
Q Consensus 145 ~~~g~~~~a~~~~ 157 (162)
.+.|+-+.|.++|
T Consensus 102 ~rLg~~~~A~~lf 114 (235)
T 2d2s_A 102 IKLGLPEQALDLF 114 (235)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCChhHHHHHH
Confidence 7777777777665
No 247
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=79.44 E-value=3.1 Score=21.63 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHh-hhhcc
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKAS-DQCLL 114 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~-~~~~~ 114 (162)
.++|.+.|.+|++..-.+...||.-.++.+ ++-.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 468899999998776667778899999888 55443
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.62 E-value=6.4 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
|++....+.+.+|-+.+|+.-|.++|+-.+.+ +.+...+|..+++-.-
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 133 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHh
Confidence 99999999999999999999999999988765 4555777988887754
No 249
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=77.64 E-value=11 Score=23.98 Aligned_cols=84 Identities=6% Similarity=-0.002 Sum_probs=55.2
Q ss_pred hHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHHHH
Q 045917 50 LHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 50 ~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
++.+.+.|..-+ -|..-...-| -|+.. .+++.++|..|...||-..... |......+...|++.+|..|+..-
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl-~ya~~--~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWL-KLGRL--CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHH-HHHHH--CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHH-HHHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555544 3333222222 33332 2457789999999988665444 566777778889999999999998
Q ss_pred HHHhcCcchhH
Q 045917 126 FKVGLHSDKYI 136 (162)
Q Consensus 126 ~~~~~~~~~~~ 136 (162)
.+.+-+|-...
T Consensus 123 i~~~A~P~~~L 133 (164)
T 2wvi_A 123 IQQKAEPLERL 133 (164)
T ss_dssp HHTTCBSHHHH
T ss_pred HHcCCCcHHHH
Confidence 88877776544
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.36 E-value=23 Score=26.34 Aligned_cols=157 Identities=9% Similarity=0.085 Sum_probs=95.7
Q ss_pred hhHHHHHHHHhhchhhhcchhHHHHHhcCCCc-----hhHHHHHHHhhC-CCChHHHHHHhhhhC-------CC----hh
Q 045917 3 SRQIETLIQLSKTAHHHHQLPALFLKTSLDHN-----TYIISRFILTSL-PISLHFTRSLFNNVM-------PP----LF 65 (162)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~-~~~~~~a~~~~~~m~-------~~----~~ 65 (162)
...+..+.-..|++.+|..++..+...-...+ ...+...++.|. .+++..|..+++... ++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 35677888888999999999988865433222 345677778888 999999999888764 11 23
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCCccHHHHHHH----hhhhccchhhhHHHHHHHHHhcCcchhHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKA----SDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTL 140 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~----~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 140 (162)
-+..++..+...+++.+|...|.+..+. .+.-|...+..++.. ..-.+.-..-..+...+.+....++...+..|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 3555666667789999999888887543 222233333322221 11112222222333333333334567788899
Q ss_pred HHHHHhc--CChhHHHHhhcc
Q 045917 141 LRMYAAC--KEIDFAKALFDE 159 (162)
Q Consensus 141 l~~y~~~--g~~~~a~~~~~~ 159 (162)
+.+|... .+++.+.+.|..
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHhchHhhhHHHHHHHHH
Confidence 9999764 345666665543
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=75.13 E-value=6.8 Score=23.80 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=10.9
Q ss_pred HHHcCCCchHHHHHHHHHHH
Q 045917 73 AYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~ 92 (162)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 44455555555555555544
No 252
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.98 E-value=16 Score=24.53 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=58.0
Q ss_pred hHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHHHHH
Q 045917 50 LHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 50 ~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~~~~ 126 (162)
++.+.+.|...+ .+-.-|--+---|+.. .+++.++|..|...||-..... |......+...|++.+|..|+..-.
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555554 4434444444445553 4678899999999988665444 5677778888899999999999988
Q ss_pred HHhcCcchh
Q 045917 127 KVGLHSDKY 135 (162)
Q Consensus 127 ~~~~~~~~~ 135 (162)
+.+-+|-..
T Consensus 178 ~~~A~P~~r 186 (223)
T 4aez_C 178 RMKAKPFLR 186 (223)
T ss_dssp HHTCBSHHH
T ss_pred HcCCccHHH
Confidence 887777433
No 253
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.86 E-value=14 Score=23.22 Aligned_cols=83 Identities=7% Similarity=-0.003 Sum_probs=56.1
Q ss_pred HHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 51 HFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 51 ~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
+.+.+.|..-+ .|-.-|--+---|+.. .+++.++|..|...||-..... |......+...|++.+|..|+..-.+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555565544 3333333333344443 3558899999999988665444 56777788888999999999998888
Q ss_pred HhcCcchh
Q 045917 128 VGLHSDKY 135 (162)
Q Consensus 128 ~~~~~~~~ 135 (162)
.+-+|-..
T Consensus 130 ~~A~P~~r 137 (152)
T 4a1g_A 130 NQAEPREF 137 (152)
T ss_dssp TTCBSHHH
T ss_pred cCCccHHH
Confidence 87777433
No 254
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=73.15 E-value=23 Score=25.31 Aligned_cols=96 Identities=4% Similarity=-0.013 Sum_probs=65.8
Q ss_pred hHHHHHHhhhhC----CChhHHHHHHHHHHcCC--CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc-chhhhHHH
Q 045917 50 LHFTRSLFNNVM----PPLFAYNTLIRAYAKTS--CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL-IGVGGSVH 122 (162)
Q Consensus 50 ~~~a~~~~~~m~----~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-~~~a~~i~ 122 (162)
++++..+++.+- .+..+|+.--..+.+.+ .+++++++++.+.+... -|...|+.---.....|. .+++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777665 57888888777777777 47899999999987532 344555544444455566 47888888
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHhc
Q 045917 123 SLIFKVGLHSDKYIGNTLLRMYAAC 147 (162)
Q Consensus 123 ~~~~~~~~~~~~~~~~~ll~~y~~~ 147 (162)
..+.+..+ -|...|+..-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHh
Confidence 88887653 5777787666555554
No 255
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.30 E-value=20 Score=23.74 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=39.1
Q ss_pred ccchhhhHHHHHHHHHhcC-cchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 113 LLIGVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 113 ~~~~~a~~i~~~~~~~~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++..+...+|..|...|+- .....|...-..+-..|++.+|.+||+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3466899999999999983 446778889999999999999999986
No 256
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=70.02 E-value=11 Score=20.41 Aligned_cols=63 Identities=8% Similarity=0.012 Sum_probs=42.2
Q ss_pred HHHHHcCCCCCCccHHHHHHHhhhhc-cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChh
Q 045917 88 DEMLKTGLRPDNLTYPFVVKASDQCL-LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 88 ~~m~~~~~~p~~~t~~~li~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
..|++.|+..+..- ..+++.+...+ ..-.+.++++.+.+.+...+..|....|+.+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 34666777766544 34556665554 56677788888877665567777777788888777654
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=69.58 E-value=31 Score=27.77 Aligned_cols=50 Identities=2% Similarity=-0.195 Sum_probs=39.2
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCC-CCccHHHHHHHhhhhccchhhhHHHHHH
Q 045917 74 YAKTSCSIESIKLFDEMLKTGLRP-DNLTYPFVVKASDQCLLIGVGGSVHSLI 125 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~i~~~~ 125 (162)
+...|+++.|+++-++-.. +.| +-.||..|.+.|.+.|+++.|.-...-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4457999999999887655 345 4678999999999999999998766554
No 258
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=68.92 E-value=1.3 Score=33.99 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA 145 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~ 145 (162)
.|+-+=.++...+++.+|.+-|-+- -|...|..+|+++.+.|.+++-.....+.++. ..++.+-+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 4444444444445454444332111 24444555555555555555555554444433 223344455555555
Q ss_pred hcCChhHHH
Q 045917 146 ACKEIDFAK 154 (162)
Q Consensus 146 ~~g~~~~a~ 154 (162)
|.|++.+-+
T Consensus 128 k~~rL~elE 136 (624)
T 3lvg_A 128 KTNRLAELE 136 (624)
T ss_dssp TSCSSSTTT
T ss_pred hhCcHHHHH
Confidence 555554433
No 259
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=67.37 E-value=34 Score=25.06 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=60.4
Q ss_pred hhHHHHHHHHhh---chhhhcchhHHHHHhc----CCCchhHHHHHHHhhCCCChHHHHHHhhhhC--CChhHHHHHHHH
Q 045917 3 SRQIETLIQLSK---TAHHHHQLPALFLKTS----LDHNTYIISRFILTSLPISLHFTRSLFNNVM--PPLFAYNTLIRA 73 (162)
Q Consensus 3 ~~~~~~~l~~~~---~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~a~~~~~~m~--~~~~~~~~li~~ 73 (162)
+..++...+..| ..+.|.+.|+.....+ ++|+. ...+-+.+.+.-++-..+++.+. .+..-=+.++.+
T Consensus 200 R~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dl---r~~Vy~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~a 276 (419)
T 3rjo_A 200 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDV---TLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFA 276 (419)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGG---HHHHHHHHTTSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCc---ceeEEeeeeCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 445555555555 3567777887765432 44442 22222222333333445565555 556667789999
Q ss_pred HHcCCCchHHHHHHHHHHHcCC-CCCCccHHHHHHHhh
Q 045917 74 YAKTSCSIESIKLFDEMLKTGL-RPDNLTYPFVVKASD 110 (162)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~ 110 (162)
++...+.....++++......+ ++. -...++.+..
T Consensus 277 L~~s~d~~ll~~~L~~~l~~~~ir~q--D~~~~~~~v~ 312 (419)
T 3rjo_A 277 LCRTQNKEKLQWLLDESFKGDKIKTQ--EFPQILTLIG 312 (419)
T ss_dssp HTTCSCHHHHHHHHHHHHHTSSSCGG--GHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCchh--HHHHHHHHHh
Confidence 9999999988888888776654 433 3334455544
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.61 E-value=14 Score=22.63 Aligned_cols=22 Identities=5% Similarity=-0.056 Sum_probs=10.2
Q ss_pred HHHhhhhccchhhhHHHHHHHH
Q 045917 106 VKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 106 i~~~~~~~~~~~a~~i~~~~~~ 127 (162)
.-++.+.|+++.|.+..+.+.+
T Consensus 85 Avg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 85 TIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444555555544444443
No 261
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=66.24 E-value=18 Score=21.94 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=17.2
Q ss_pred cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 114 ~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
..-.|.++++.+.+.+...+..|.-.-|+.+.+.|-+
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3444555555555544334444444444444444433
No 262
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=66.15 E-value=14 Score=26.22 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=48.8
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH---hcCChhHHHHhhcccC
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA---ACKEIDFAKALFDEMP 161 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~---~~g~~~~a~~~~~~m~ 161 (162)
+++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|...-..+.-+++..+. -..+.++..+++.++|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 455667778989888888888888777778888888888877663211222223333222 2345677777776654
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.94 E-value=18 Score=26.22 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=46.1
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC-CC---hhHHHHHHHHHHcCCC--chHHHHHHHHHHHcCCCCCCcc
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM-PP---LFAYNTLIRAYAKTSC--SIESIKLFDEMLKTGLRPDNLT 101 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~-~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t 101 (162)
..+.++.-|. .++.++|.+.++++. |. .+...++..+.-+.++ .+....++..+...|+.+....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3588888888 999999999999998 53 3445566666665433 3557788888887766554443
No 264
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=65.80 E-value=20 Score=25.33 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CC---hhHHHHHHHHHHcCCC--chHHHHHHHHHHHcCCCCCCcc
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PP---LFAYNTLIRAYAKTSC--SIESIKLFDEMLKTGLRPDNLT 101 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t 101 (162)
.+.++.-|. .|+.++|.+.++++. |. .....++..+.-+.++ .+....++..+...|+.+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 578888888 999999999999998 53 3445556666665433 4556688888887766554443
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.74 E-value=19 Score=22.43 Aligned_cols=49 Identities=6% Similarity=0.043 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
..++..++.+..+.+-.-.-...--|.-++.+.|+++.|.+..+.+.+.
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3445555555544321111111223344555666666666666655553
No 266
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=65.72 E-value=21 Score=22.06 Aligned_cols=61 Identities=8% Similarity=0.017 Sum_probs=33.1
Q ss_pred HHHcCCCCCCccHHHHHHHhhhhc-cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChh
Q 045917 90 MLKTGLRPDNLTYPFVVKASDQCL-LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 90 m~~~~~~p~~~t~~~li~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
|++.|++++..=. .+++.+...+ ..-.|.++++.+.+.+...+..|.-.-|+.+...|.+.
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4555655543322 3344444444 45567777777766655455555555556666665543
No 267
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=65.43 E-value=18 Score=22.17 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=30.3
Q ss_pred HHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCCh
Q 045917 90 MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEI 150 (162)
Q Consensus 90 m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~ 150 (162)
+++.|++++..=. .+++.+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455555443322 23334434444556666666665554444555555555555555544
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.84 E-value=15 Score=23.09 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=37.3
Q ss_pred chhhhHHHHHHHHHhc-CcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 115 IGVGGSVHSLIFKVGL-HSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 115 ~~~a~~i~~~~~~~~~-~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.++...+|..|.++|+ ......|...-..+-..|++.+|.+||+
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3568899999999987 3446778888899999999999999986
No 269
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=62.54 E-value=29 Score=24.73 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=31.3
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CC---hhHHHHHHHHHHcCC-CchHHHHHHHHHHHcCC
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PP---LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGL 95 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~ 95 (162)
...++.-|. .|+.++|.+-++++. |. .....++..+.-+.. .-+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 356777777 788888888888876 42 222233333332221 22344456666655544
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.49 E-value=44 Score=24.60 Aligned_cols=88 Identities=9% Similarity=0.020 Sum_probs=63.5
Q ss_pred hHHHHHHHHhhchhhhcchhHHHHHhcCC--CchhHHHHHHHhhC-CCChHHHHHHhhhhC------CChhH------HH
Q 045917 4 RQIETLIQLSKTAHHHHQLPALFLKTSLD--HNTYIISRFILTSL-PISLHFTRSLFNNVM------PPLFA------YN 68 (162)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~------~~~~~------~~ 68 (162)
..+..++..+|+.+.|.+++..++..... .-...+-.+++.+. .+++..+....+... ++... |.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 45777888999999999999998765443 34566777888888 999999998888775 33222 33
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
.++ +...+++..|...|.+....
T Consensus 215 gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHhChHHHHHHHHHHHhcc
Confidence 332 23468899999988887544
No 271
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.25 E-value=25 Score=21.72 Aligned_cols=62 Identities=13% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChh
Q 045917 89 EMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 89 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
.+++.|++++..=. .+++.+...+..-.|.++++.+.+.+...+..|.-..|+.+...|.+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 35556665543322 344444444556677777777766655555555555566666666543
No 272
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=61.83 E-value=43 Score=24.26 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=39.2
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CC----hhHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCC
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PP----LFAYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRP 97 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~----~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p 97 (162)
...++.-|. .|+.++|.+-++++. |+ .+.+..+..++-+.. .-+.+..++..+...++.+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 478888888 999999999999998 74 234444444444432 1234446667776665543
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.40 E-value=11 Score=26.21 Aligned_cols=107 Identities=8% Similarity=-0.030 Sum_probs=64.6
Q ss_pred HHhhchhhhcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CC----hhHHHHHHHHHHcCCCchH
Q 045917 11 QLSKTAHHHHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PP----LFAYNTLIRAYAKTSCSIE 82 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~----~~~~~~li~~~~~~~~~~~ 82 (162)
-+.|++.++.+....-.+. -+-|...-..+++.+| .|+++.|...++... |+ ...|-.+|.
T Consensus 8 l~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~---------- 76 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK---------- 76 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----------
T ss_pred HhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----------
Confidence 3446677776655544444 3567888899999999 999999999988776 44 333444443
Q ss_pred HHHHHHHHHHcCCCCCC----c-cHHHHHHHhhh--hccchhhhHHHHHHHHH
Q 045917 83 SIKLFDEMLKTGLRPDN----L-TYPFVVKASDQ--CLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 83 a~~~~~~m~~~~~~p~~----~-t~~~li~~~~~--~~~~~~a~~i~~~~~~~ 128 (162)
|+..-.+..+.+-.|.. . -...++++... .|+.++|..+-......
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22232333344433322 1 23445555443 47788888777666554
No 274
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=61.34 E-value=30 Score=24.42 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHH----HhcCChhHHHHhhcc
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY----AACKEIDFAKALFDE 159 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y----~~~g~~~~a~~~~~~ 159 (162)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|...-..+.-+++..+ .++.+.++....+.+
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 455666777888888888888888877767888888888887776542222333333332 234567777776654
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.26 E-value=43 Score=24.06 Aligned_cols=111 Identities=11% Similarity=-0.011 Sum_probs=60.9
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHH----HHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLF----DEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
+|.++..-|. .+++++|..++-.- ...+.+.|+...+-++- +-..+.++++|..+...+++.+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 4566666666 77777776665432 12333445555555444 334456777777766666666655
Q ss_pred hccchhh-hHHH----HHHHHHh--cCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 112 CLLIGVG-GSVH----SLIFKVG--LHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 112 ~~~~~~a-~~i~----~~~~~~~--~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
...-+.. ..+. .+-.+.| ...|+.....+-..|.+.+++.+|++-|
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4432211 1122 2223333 2345566666777777888888877654
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.18 E-value=34 Score=22.61 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=66.0
Q ss_pred hhHHHHHhcCCCchh---HHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 22 LPALFLKTSLDHNTY---IISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~---~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
+.+.+.+.|..++.. .-.+.+...+ .|+.+-+..+++.-. ++..-++.+..+ +..|+. ++++.+.+.
T Consensus 20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~ 94 (285)
T 1wdy_A 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AIAGSV----KLLKLFLSK 94 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHTCH----HHHHHHHHT
T ss_pred HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HHcCCH----HHHHHHHHc
Confidence 444455556544321 1123344444 888887777776533 333333333333 334443 455556667
Q ss_pred CCCCCCc---cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchh------------HHHHHHHHHHhcCChhHHHHhhc
Q 045917 94 GLRPDNL---TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY------------IGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 94 ~~~p~~~---t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~------------~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
|..++.. -++.+..+ +..|+. ++++.+.+.|..++.. .-.+.+..-++.|+.+-+..+++
T Consensus 95 g~~~~~~~~~g~t~L~~A-~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 95 GADVNECDFYGFTAFMEA-AVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169 (285)
T ss_dssp TCCTTCBCTTCCBHHHHH-HHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCccCcccCCHHHHH-HHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 7666543 23444444 445554 3455566666544422 11245566667788877777665
Q ss_pred c
Q 045917 159 E 159 (162)
Q Consensus 159 ~ 159 (162)
+
T Consensus 170 ~ 170 (285)
T 1wdy_A 170 E 170 (285)
T ss_dssp T
T ss_pred h
Confidence 3
No 277
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=59.83 E-value=28 Score=21.85 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=41.2
Q ss_pred hHHHHHHHH-HHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH--hcCcchhHHHHHHHHHHhcCChh
Q 045917 81 IESIKLFDE-MLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV--GLHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 81 ~~a~~~~~~-m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
..+++-+.+ +++.|++++..= ..+++.+...+..-.|.++++.+.+. +...+..|.=.-|+.+.+.|.+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344444433 455676664432 34555665666677777888777776 55556555555566777666554
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.79 E-value=25 Score=22.77 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHhhchhhhcchhHHHHHhcCCCch---hHHHHHHHhhC-CCChHHHHHHhh
Q 045917 8 TLIQLSKTAHHHHQLPALFLKTSLDHNT---YIISRFILTSL-PISLHFTRSLFN 58 (162)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~-~~~~~~a~~~~~ 58 (162)
..-...|+.+.++.+++.+.+.|..++. .-.+. +...+ .|+.+-+..+++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHHHHHHHHH
Confidence 3344445666666666655555544332 12222 22333 666665555554
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.71 E-value=49 Score=24.27 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=77.6
Q ss_pred hhHHHHHHHhhC--CCChHHHHHHhhhhC----CChhHH------HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc-
Q 045917 35 TYIISRFILTSL--PISLHFTRSLFNNVM----PPLFAY------NTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT- 101 (162)
Q Consensus 35 ~~~~~~ll~~~~--~~~~~~a~~~~~~m~----~~~~~~------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t- 101 (162)
.-..+.|++.+. .+..+.-..+..+.. ....+| .-+...|...|++.+|..++.++.+.=-+.|.-+
T Consensus 58 ~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~ 137 (394)
T 3txn_A 58 AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL 137 (394)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh
Confidence 445678889888 566655555555443 222233 2578899999999999999999876411223222
Q ss_pred ----HHHHHHHhhhhccchhhhHHHHHHHHH--hcCcchhHHHHHHHH-----HH-hcCChhHHHHhhc
Q 045917 102 ----YPFVVKASDQCLLIGVGGSVHSLIFKV--GLHSDKYIGNTLLRM-----YA-ACKEIDFAKALFD 158 (162)
Q Consensus 102 ----~~~li~~~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~ll~~-----y~-~~g~~~~a~~~~~ 158 (162)
+-.-++.|...+++.++...+...... .+.+++.+. +-++. +. ..+++..|...|-
T Consensus 138 llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 138 LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHHHHHhhHHHHHhccCHHHHHHHHH
Confidence 333456777889999999888776542 232344332 22332 23 6788888887764
No 280
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=59.70 E-value=25 Score=22.63 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=7.7
Q ss_pred HHHHHHhcCChhHHHHh
Q 045917 140 LLRMYAACKEIDFAKAL 156 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~ 156 (162)
.+..-++.|+.+-+.-+
T Consensus 175 ~L~~A~~~~~~~~v~~L 191 (231)
T 3aji_A 175 PLHLACDEERVEEAKFL 191 (231)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 33444445555444443
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.63 E-value=24 Score=23.96 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=5.3
Q ss_pred CCChHHHHHHhh
Q 045917 47 PISLHFTRSLFN 58 (162)
Q Consensus 47 ~~~~~~a~~~~~ 58 (162)
.|+.+-+..+++
T Consensus 72 ~g~~~~v~~Ll~ 83 (285)
T 3kea_A 72 LEDTKIVKILLF 83 (285)
T ss_dssp SSSCHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 444444444443
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.33 E-value=22 Score=22.63 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHhcC-cchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 116 GVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 116 ~~a~~i~~~~~~~~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+....+|..|..+|+- .-...|...-..|-..|++.+|.+||.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5688899999999883 346778888888999999999999986
No 283
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=59.08 E-value=26 Score=22.04 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=16.2
Q ss_pred HHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhh
Q 045917 24 ALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNV 60 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m 60 (162)
+.+++.|+.+++ .-..++..+. .+..-.|..+++.+
T Consensus 22 ~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l 58 (162)
T 4ets_A 22 KILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEI 58 (162)
T ss_dssp HHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHH
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 344555555543 2333444444 44444455554443
No 284
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=58.76 E-value=28 Score=21.09 Aligned_cols=13 Identities=8% Similarity=0.053 Sum_probs=7.3
Q ss_pred CCChHHHHHHhhh
Q 045917 47 PISLHFTRSLFNN 59 (162)
Q Consensus 47 ~~~~~~a~~~~~~ 59 (162)
.|+.+-+..+++.
T Consensus 52 ~~~~~~v~~Ll~~ 64 (165)
T 3twr_A 52 YNRVSVVEYLLQH 64 (165)
T ss_dssp TTCHHHHHHHHHT
T ss_pred cChHHHHHHHHhc
Confidence 5666555555554
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.79 E-value=21 Score=23.97 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=37.8
Q ss_pred chhhhHHHHHHHHHhcC-cchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 115 IGVGGSVHSLIFKVGLH-SDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 115 ~~~a~~i~~~~~~~~~~-~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+....+|..|...|+- .....|...-..|-..|++.+|.+||+.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35788899999999883 4467788899999999999999999863
No 286
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.52 E-value=17 Score=22.34 Aligned_cols=35 Identities=6% Similarity=-0.115 Sum_probs=16.4
Q ss_pred chhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCC
Q 045917 115 IGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKE 149 (162)
Q Consensus 115 ~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~ 149 (162)
.-.|.++++.+.+.+...+..|.=.-|+.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44555555555544433344443344444444443
No 287
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=57.30 E-value=28 Score=20.75 Aligned_cols=138 Identities=12% Similarity=-0.054 Sum_probs=69.2
Q ss_pred HHhhchhhhcchhHHHHHhcC-CCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHH
Q 045917 11 QLSKTAHHHHQLPALFLKTSL-DHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~ 84 (162)
...|+.+.++.+++. ....+ ..+..-.+.|. . + .|+.+-+..+++.-. +|..-++.+..+ +..|+.+
T Consensus 10 ~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~-~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~--- 82 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR-ELVHPDALNRFGKTALQ-V-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDA-ARTGFLD--- 82 (156)
T ss_dssp HHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHH-H-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH---
T ss_pred HHhCCHHHHHHHHHh-hCcCccccCCCCCcHHH-H-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-HHcCcHH---
Confidence 334566666555544 11111 12333344444 4 7 888888888776533 344444444444 3445554
Q ss_pred HHHHHHHHcCCCCCCc---cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhccc
Q 045917 85 KLFDEMLKTGLRPDNL---TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEM 160 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~---t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m 160 (162)
+.+.+.+.|..++.. -.+.+..+ +..|+.+-++-+.+. .... ..|..- .+.+..-++.|+.+-+.-+++.|
T Consensus 83 -~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~-~~~~-~~~~~g-~t~l~~A~~~~~~~~v~~Ll~~~ 156 (156)
T 1bd8_A 83 -TLKVLVEHGADVNVPDGTGALPIHLA-VQEGHTAVVSFLAAE-SDLH-RRDARG-LTPLELALQRGAQDLVDILQGHM 156 (156)
T ss_dssp -HHHHHHHTTCCSCCCCTTSCCHHHHH-HHHTCHHHHHHHHTT-SCTT-CCCTTS-CCHHHHHHHSCCHHHHHHHHTTC
T ss_pred -HHHHHHHcCCCCCCcCCCCCcHHHHH-HHhChHHHHHHHHhc-cCCC-CcCCCC-CCHHHHHHHcCcHHHHHHHHhhC
Confidence 444455566655433 33444444 455665544444333 1110 112222 24455556788888887777654
No 288
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=56.91 E-value=22 Score=21.68 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccc
Q 045917 69 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLI 115 (162)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~ 115 (162)
.++..+...++.-.|.++++.+++.+...+..|.---++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555555666666766666665555555555555555555443
No 289
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=56.73 E-value=13 Score=22.70 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=15.6
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
-..++..+. .+..-.|..+++.+.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~ 40 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLK 40 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 355666666 555666777777764
No 290
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.66 E-value=15 Score=22.03 Aligned_cols=45 Identities=13% Similarity=0.013 Sum_probs=24.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 114 (162)
++..+...+..-.|.++++.+++.+...+..|.--.++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444455556666666666665555555555555555554443
No 291
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=55.64 E-value=23 Score=22.37 Aligned_cols=132 Identities=10% Similarity=-0.066 Sum_probs=58.8
Q ss_pred cchhHHHHH-hcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 045917 20 HQLPALFLK-TSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 94 (162)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (162)
+++|..+-. ..-..+..-+..++.... ...-++...+|+.+- ....+|..++..+... .....+|+..-..+
T Consensus 30 ~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~---~~~~~~F~~~D~d~ 106 (191)
T 1y1x_A 30 MEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI---LSMREGFRKRDSSG 106 (191)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---HHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH---HHHHHHHHHhCCCC
Confidence 344444422 222344444444443333 344556666776665 3456666666665543 34445555543221
Q ss_pred CCCCCccHHHHHHHhhhhc---cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 95 LRPDNLTYPFVVKASDQCL---LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 95 ~~p~~~t~~~li~~~~~~~---~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
-...+..-+...+...| .-+++..++..+-..+ -....|.-++..+.....+..+.+.++
T Consensus 107 --~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~--dg~i~~~eF~~~~~~~~~~~~~F~~~D 169 (191)
T 1y1x_A 107 --DGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQR--RGSLGFDDYVELSIFVCRVRNVFAFYD 169 (191)
T ss_dssp --SSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTC--SSSBCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCeEeHHHHHHHHHHHHHHHHHHHHhC
Confidence 01233333333333333 2233334444332221 124556666666655544444444443
No 292
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.61 E-value=93 Score=26.22 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=13.9
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
.|..+++.+. .|++++|...+-.++
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 3555555555 666666655555444
No 293
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.53 E-value=34 Score=21.11 Aligned_cols=35 Identities=6% Similarity=0.006 Sum_probs=13.5
Q ss_pred HHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhh
Q 045917 25 LFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNV 60 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m 60 (162)
.+++.|+.+++. -..++..+. .+..-.|..+++.+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l 52 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSI 52 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHH
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHH
Confidence 344455444321 223333333 33344445555444
No 294
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.20 E-value=33 Score=20.95 Aligned_cols=37 Identities=3% Similarity=0.041 Sum_probs=18.7
Q ss_pred HHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC
Q 045917 24 ALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM 61 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~ 61 (162)
+.+++.|+.+++. -..++..+. .+..-.|..+++.+.
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~ 48 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALE 48 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHG
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 4455666655542 233444444 444455666666654
No 295
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=55.14 E-value=3.7 Score=31.55 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=76.2
Q ss_pred hhHHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 35 TYIISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 35 ~~~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
+..|..|=++.. .+++.+|..-|=.. .|+..|..+|....+.|++++-.+.+..-++..-+| ..=+.|+-+|++.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTN 130 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhC
Confidence 344666666666 55555554433221 566688999999999999998888776655543334 44467999999999
Q ss_pred cchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcccC
Q 045917 114 LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 114 ~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
++.+-++... .|+..-...+=+-+...|.++.|.-+|..++
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 9887766542 2555555555566666777776666665543
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.09 E-value=15 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
..+.++.-|...|+.++|..-++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35678999999999999999999985
No 297
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.06 E-value=28 Score=24.18 Aligned_cols=70 Identities=9% Similarity=-0.038 Sum_probs=46.6
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCCcc-HHHHHHHhhhhccchhhhHHHHHHHHHh--cCcchhHHHHHHHH
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLT-YPFVVKASDQCLLIGVGGSVHSLIFKVG--LHSDKYIGNTLLRM 143 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~ll~~ 143 (162)
....+.|++++++.-..+-.+. .|.... =..|++-+|-.|+++.|.+=.....+.. ..|....|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 4566788999999877776553 243333 3558899999999999988776666543 23344455555554
No 298
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=54.53 E-value=21 Score=18.40 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=27.2
Q ss_pred HHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 045917 51 HFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 51 ~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 99 (162)
++....+.+|= -+......++. ...|+++.|...+-+|...+..|++
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 44444555543 33333333333 3467888888888888776666653
No 299
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=54.18 E-value=24 Score=21.16 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=34.8
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChh
Q 045917 105 VVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 105 li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
+++.+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 45555556667789999999988776667777777778888877654
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=52.40 E-value=48 Score=21.92 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=40.1
Q ss_pred HHHHHHc---CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc-----chhhhHHHHHHHHHhc
Q 045917 70 LIRAYAK---TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL-----IGVGGSVHSLIFKVGL 130 (162)
Q Consensus 70 li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-----~~~a~~i~~~~~~~~~ 130 (162)
+|+++.| -.+++.|+-.+-+|.+.| .|....=..++-+.-..|. +..|...++...+-|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4555555 489999999999999999 7765555556666666655 3344445555556665
No 301
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.30 E-value=22 Score=21.45 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=14.8
Q ss_pred HHHhcCCCchhHHHHHHHhhC-CC-ChHHHHHHhhhh
Q 045917 26 FLKTSLDHNTYIISRFILTSL-PI-SLHFTRSLFNNV 60 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~ll~~~~-~~-~~~~a~~~~~~m 60 (162)
+++.|+.+++. -..++..+. .+ ..-.|..+++.+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l 44 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKAL 44 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHH
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 44555554432 223333333 33 444555555555
No 302
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=51.33 E-value=28 Score=19.16 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=13.4
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (162)
|++.||+-+...+-+..-..+++.+.++
T Consensus 34 pgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 34 PNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp TTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555555555544444444444444443
No 303
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=49.42 E-value=35 Score=21.43 Aligned_cols=24 Identities=4% Similarity=-0.119 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHhhc
Q 045917 135 YIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 135 ~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
..|.-.+..+.+...+.+|.+.|+
T Consensus 131 I~~~EF~~~~~~~~~~~~~F~~~D 154 (174)
T 2i7a_A 131 VSFPSLVCFLMRLEAMAKTFRNLS 154 (174)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555554444434444444443
No 304
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=49.08 E-value=54 Score=21.62 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=32.3
Q ss_pred HHHHHHc---CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc
Q 045917 70 LIRAYAK---TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL 114 (162)
Q Consensus 70 li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 114 (162)
+|+++.| -.|++.|+-.+-+|.+.|-.|....=..++-+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 4556655 47899999999999999988865555555555555554
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.70 E-value=36 Score=21.29 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=50.4
Q ss_pred CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC-CCC---CCccHHHHHHHhhhhccchh
Q 045917 47 PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRP---DNLTYPFVVKASDQCLLIGV 117 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p---~~~t~~~li~~~~~~~~~~~ 117 (162)
.|+.+-+..+++.-. .+..-.+.+. ..+..|+.+ +.+.+.+.| ..+ |..-.+.+..++........
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHID----NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHH-HHHHTTCHH----HHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 666666666664432 2222222222 233344443 333333333 332 33334445444432222222
Q ss_pred hhHHHHHHHHHhcCcchhHH--HHHHHHHHhcCChhHHHHhhc
Q 045917 118 GGSVHSLIFKVGLHSDKYIG--NTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 118 a~~i~~~~~~~~~~~~~~~~--~~ll~~y~~~g~~~~a~~~~~ 158 (162)
-.++.+.+.+.|..++.... .+.+..-++.|+.+-+.-+.+
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 35667777777765553322 234555566777776665543
No 306
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=48.46 E-value=17 Score=22.64 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=29.3
Q ss_pred CCChHHHHHHhhhhC---CC-hhH-HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 045917 47 PISLHFTRSLFNNVM---PP-LFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~-~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 99 (162)
..+...+..++++.- |. ..- .=-+--++.+.|++++|.+..+.+.+ ++|+.
T Consensus 55 ~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 55 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 344556666666654 31 111 11233366777888888888777766 55653
No 307
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=47.67 E-value=37 Score=24.80 Aligned_cols=45 Identities=4% Similarity=0.046 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHh
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVG 129 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~ 129 (162)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 455666777888888888878777777667888888888887766
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.62 E-value=23 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
..+.+|.-|...|+.++|...++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45678999999999999999999985
No 309
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=46.79 E-value=15 Score=25.51 Aligned_cols=25 Identities=36% Similarity=0.689 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCChhHHHHhhcccC
Q 045917 137 GNTLLRMYAACKEIDFAKALFDEMP 161 (162)
Q Consensus 137 ~~~ll~~y~~~g~~~~a~~~~~~m~ 161 (162)
-|.|++-|..+|+++.|.++|+.+|
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 4788999999999999999999876
No 310
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=46.43 E-value=22 Score=25.33 Aligned_cols=77 Identities=6% Similarity=0.053 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc---hhHHHHHHHHH----HhcCChhHHHHhh
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD---KYIGNTLLRMY----AACKEIDFAKALF 157 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~ll~~y----~~~g~~~~a~~~~ 157 (162)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|.... ..+.-+++..+ .++.+++++..++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3445566678888777777777777777678888888888877664322 12233334333 2357888888888
Q ss_pred cccC
Q 045917 158 DEMP 161 (162)
Q Consensus 158 ~~m~ 161 (162)
.+++
T Consensus 310 ~~~p 313 (345)
T 2qfz_A 310 QNLP 313 (345)
T ss_dssp TSCS
T ss_pred HcCC
Confidence 7765
No 311
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.66 E-value=27 Score=20.86 Aligned_cols=44 Identities=7% Similarity=-0.111 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHH
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKV 128 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~ 128 (162)
-+|+.+.+..+.|+...--.-+..+...+++..|.+++..+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34555566667555433333344455778889999888887664
No 312
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=43.81 E-value=66 Score=21.05 Aligned_cols=90 Identities=8% Similarity=-0.146 Sum_probs=52.4
Q ss_pred HHHHHHHhhchhhhcchhHHHHHhcCCCch-------hHHHHHHHhhCC---CChHHHHHHhhhhC-CC-----------
Q 045917 6 IETLIQLSKTAHHHHQLPALFLKTSLDHNT-------YIISRFILTSLP---ISLHFTRSLFNNVM-PP----------- 63 (162)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~---~~~~~a~~~~~~m~-~~----------- 63 (162)
.+..-...|+.+..+.+.+.+.+.|..++. ...+.|..+... |+.+-+..+++.-. ++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 344445567888888899988888865443 334444443325 88877777776533 21
Q ss_pred ---hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc
Q 045917 64 ---LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL 100 (162)
Q Consensus 64 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 100 (162)
..-++.+..+ +..|+.+ +.+.+.+.|..++..
T Consensus 85 ~~d~~g~t~L~~A-~~~g~~~----~v~~Ll~~ga~~~~~ 119 (256)
T 2etb_A 85 DEFYQGHSALHIA-IEKRSLQ----CVKLLVENGADVHLR 119 (256)
T ss_dssp STTTTTCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCC
T ss_pred cccccCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCcc
Confidence 2344444443 4456544 444455567666544
No 313
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.71 E-value=42 Score=20.51 Aligned_cols=12 Identities=0% Similarity=-0.081 Sum_probs=5.7
Q ss_pred HHHHHhcCCCch
Q 045917 24 ALFLKTSLDHNT 35 (162)
Q Consensus 24 ~~~~~~~~~~~~ 35 (162)
+.+++.|+++++
T Consensus 8 ~~L~~~g~r~T~ 19 (145)
T 3eyy_A 8 SDLRQRGYRLTP 19 (145)
T ss_dssp HHHHTTTCCCCH
T ss_pred HHHHHcCCCcCH
Confidence 344455555443
No 314
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=42.96 E-value=82 Score=21.89 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHH---hcCChhHHHHhhc
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYA---ACKEIDFAKALFD 158 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~---~~g~~~~a~~~~~ 158 (162)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|...-..+.-+++..+. -..+.++..+.|.
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555666778888888888888888776678888888888877764321222222222211 1236666666653
No 315
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.84 E-value=1.5e+02 Score=24.97 Aligned_cols=106 Identities=9% Similarity=-0.065 Sum_probs=74.7
Q ss_pred CCChHHHHHHhhhhC---------C------------------ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 045917 47 PISLHFTRSLFNNVM---------P------------------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 99 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---------~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 99 (162)
.|++++|...|.... . -..=|.-++..+-+.+.++.+.++-+.-.+..- ++.
T Consensus 855 ~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~ 933 (1139)
T 4fhn_B 855 SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDD 933 (1139)
T ss_dssp TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCC
T ss_pred cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCC
Confidence 999999999998663 0 011267788888888999988887766544321 222
Q ss_pred c-----cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHH
Q 045917 100 L-----TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKA 155 (162)
Q Consensus 100 ~-----t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~ 155 (162)
. .|..+++++...|++++|-.....+..... -......||...|..|.++.-..
T Consensus 934 ~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 934 EDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhC
Confidence 1 478889999999999999888766654433 34566778888887777765443
No 316
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.69 E-value=65 Score=20.66 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=56.0
Q ss_pred CCChHHHHHHhhhhC--------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCcc---HHHHHHHhhhhccc
Q 045917 47 PISLHFTRSLFNNVM--------PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNLT---YPFVVKASDQCLLI 115 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~li~~~~~~~~~ 115 (162)
.|+.+.+..+++... .+..-++.+.. .+..|+. ++++.+.+.|..++... .+.+..+ +..|+.
T Consensus 19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~ 92 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL-AVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLA-CEHRSP 92 (241)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHH-HHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHH-HHcCCH
Confidence 888888888876322 34444444444 4445554 35555666776665433 3334333 455554
Q ss_pred hhhhHHHHHHHHHhc----Ccch--hHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 116 GVGGSVHSLIFKVGL----HSDK--YIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 116 ~~a~~i~~~~~~~~~----~~~~--~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+ +++.+.+.+. .++. ..-.+.+..-+..|+.+-+..+++.
T Consensus 93 ~----~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 138 (241)
T 1k1a_A 93 T----CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138 (241)
T ss_dssp H----HHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred H----HHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 4 3444455543 2221 1233556666778888877766653
No 317
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=42.34 E-value=58 Score=19.96 Aligned_cols=13 Identities=8% Similarity=-0.148 Sum_probs=6.5
Q ss_pred CCChHHHHHHhhh
Q 045917 47 PISLHFTRSLFNN 59 (162)
Q Consensus 47 ~~~~~~a~~~~~~ 59 (162)
.|+.+-+..+++.
T Consensus 49 ~~~~~~v~~Ll~~ 61 (179)
T 3f6q_A 49 EGRSAVVEMLIMR 61 (179)
T ss_dssp TTCHHHHHHHHHT
T ss_pred cCcHHHHHHHHHc
Confidence 5555555444443
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.31 E-value=1.2e+02 Score=23.30 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=46.0
Q ss_pred HHHHHhcCCCc----hhHHHHHHHhhC-CCChHHHHHHhhhhC-CCh-hHHHHHH-------HHHHcCCCchHHHHHHHH
Q 045917 24 ALFLKTSLDHN----TYIISRFILTSL-PISLHFTRSLFNNVM-PPL-FAYNTLI-------RAYAKTSCSIESIKLFDE 89 (162)
Q Consensus 24 ~~~~~~~~~~~----~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~-~~~~~li-------~~~~~~~~~~~a~~~~~~ 89 (162)
...+..-+..| ...+|.+++.|. .+.++.|..+..... |.. .+.+-.. ..+.-.+++.+|.+-+..
T Consensus 216 ~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 216 KFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33344444444 466889999999 999999999999987 532 2222222 123346889999888777
Q ss_pred HHHc
Q 045917 90 MLKT 93 (162)
Q Consensus 90 m~~~ 93 (162)
-.+.
T Consensus 296 A~rk 299 (523)
T 4b4t_S 296 AIRK 299 (523)
T ss_dssp HTSS
T ss_pred HHHh
Confidence 6543
No 319
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=41.04 E-value=42 Score=17.97 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=26.7
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccch
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~ 116 (162)
..++|.+.|.+|++..-.....+|...+..+..-.++.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~ 50 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYS 50 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCcccc
Confidence 45789999999876544455678888888776654443
No 320
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=40.79 E-value=46 Score=18.40 Aligned_cols=38 Identities=13% Similarity=-0.150 Sum_probs=26.8
Q ss_pred CchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccch
Q 045917 79 CSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIG 116 (162)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~ 116 (162)
..+++...|.+|+...-.+...||...+...+.-.++.
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~ 52 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL 52 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccc
Confidence 45788999999976544455678888887776654443
No 321
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.77 E-value=79 Score=21.07 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=42.0
Q ss_pred HHHHHHHc---CCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhcc-----chhhhHHHHHHHHHhc
Q 045917 69 TLIRAYAK---TSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLL-----IGVGGSVHSLIFKVGL 130 (162)
Q Consensus 69 ~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-----~~~a~~i~~~~~~~~~ 130 (162)
-+|+++.| -.+++.|+-.+-+|.+.|-.|....=..++-+.-..|. +..|...++...+-|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34566655 47899999999999999988876655666666666655 3344445555566665
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.68 E-value=28 Score=21.52 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=19.6
Q ss_pred HHHHHhcCCCchhHHHHHHHhhC-CC-ChHHHHHHhhhhC
Q 045917 24 ALFLKTSLDHNTYIISRFILTSL-PI-SLHFTRSLFNNVM 61 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ll~~~~-~~-~~~~a~~~~~~m~ 61 (162)
+.+++.|+.+++. -..++..+. .+ ..-.|..+++.+.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~ 44 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLI 44 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3455666665542 234444444 44 4555666666664
No 323
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=39.25 E-value=34 Score=17.56 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.8
Q ss_pred cCCCchHHHHHHHHHHHcC-CCCC
Q 045917 76 KTSCSIESIKLFDEMLKTG-LRPD 98 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~-~~p~ 98 (162)
...|++.|...|.+++..| |+|+
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHH
Confidence 4689999999999998655 4443
No 324
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=37.66 E-value=1.1e+02 Score=21.70 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=65.0
Q ss_pred HHHHHHHhhC-CCChHHHHHHhhhhCCChhHHHHHHHHHHcCCCchHHHHHH----HHHHHcCCCCCCccHHHHHHHhhh
Q 045917 37 IISRFILTSL-PISLHFTRSLFNNVMPPLFAYNTLIRAYAKTSCSIESIKLF----DEMLKTGLRPDNLTYPFVVKASDQ 111 (162)
Q Consensus 37 ~~~~ll~~~~-~~~~~~a~~~~~~m~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~li~~~~~ 111 (162)
.|.++..-|. .+++++|..++-.- ...+.++|+...|-++- +-..+.+++++......+++.+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4555555555 66666666654431 22334456666666653 334556788887777777776655
Q ss_pred hccch-hhhHHHHHH----HHHh--cCcchhHHHHHHHHHHhcCChhHHHHhh
Q 045917 112 CLLIG-VGGSVHSLI----FKVG--LHSDKYIGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 112 ~~~~~-~a~~i~~~~----~~~~--~~~~~~~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
...-+ .-.++...+ .+.| ...|+.....+-..|.+.|++.+|++-|
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 43222 122333333 3332 1346777788888888999999888754
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.03 E-value=60 Score=18.33 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=40.6
Q ss_pred hcchhHHHHHhcCCCchhHHHHHHHhhC-CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHH
Q 045917 19 HHQLPALFLKTSLDHNTYIISRFILTSL-PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESI 84 (162)
Q Consensus 19 a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~ 84 (162)
...+++.+.+.|+- +......+- ... ....+.|..+++.++ ....+|..++.++...|+..-|.
T Consensus 23 ~~~vld~L~~~~vl-t~~~~e~I~-~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 23 VDQLWDVLLSRELF-RPHMIEDIQ-RAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CTTTHHHHHHTTSS-CHHHHHHHH-TSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHH-hccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 55677777777743 222223222 221 246788888888888 66778888888887766655443
No 326
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.00 E-value=64 Score=18.63 Aligned_cols=59 Identities=17% Similarity=0.041 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHH-H----HHHhcCcchhHHHHH
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSL-I----FKVGLHSDKYIGNTL 140 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~-~----~~~~~~~~~~~~~~l 140 (162)
.-.+..+-++...-|+.|+.....-+++-|...+- + +.++..+ | ...|..|+....+.+
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 34566777888888999998888888888776653 2 4433222 2 344666776665544
No 327
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=35.86 E-value=1e+02 Score=20.99 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=51.5
Q ss_pred HHHHHhhCCCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc---cHHHHHHHhh
Q 045917 39 SRFILTSLPISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL---TYPFVVKASD 110 (162)
Q Consensus 39 ~~ll~~~~~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~li~~~~ 110 (162)
+.|+.+...|+.+....++.... .|..-++.+. ..+..|+.+ +.+.+.+.|..++.. -.+.|..+ +
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A-~ 99 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH-LAAGYNRVR----IVQLLLQHGADVHAKDKGGLVPLHNA-C 99 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH-H
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHH-H
Confidence 33333333777777777776544 2332233333 333445543 444444555554433 23334333 3
Q ss_pred hhccchhhhHHHHHHHHHhcCcchhH--HHHHHHHHHhcCChhHHHHhhc
Q 045917 111 QCLLIGVGGSVHSLIFKVGLHSDKYI--GNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 111 ~~~~~~~a~~i~~~~~~~~~~~~~~~--~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
..|+.+ +++.+.+.|..++... -.+.+..-+..|+.+-+..+++
T Consensus 100 ~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 100 SYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 444433 4445555555443221 1234444556666666665554
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.84 E-value=89 Score=21.02 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=12.7
Q ss_pred HHHHHHhcCChhHHHHhhcc
Q 045917 140 LLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 140 ll~~y~~~g~~~~a~~~~~~ 159 (162)
.+-.|.+.|.+++|.++|++
T Consensus 120 AV~VCiek~~f~kA~eiLkr 139 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKK 139 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHH
Confidence 44556667777777766654
No 329
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.60 E-value=94 Score=24.15 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=22.6
Q ss_pred cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHH
Q 045917 101 TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAK 154 (162)
Q Consensus 101 t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~ 154 (162)
....++..|.+.|-.+.|+++...+-..-.. +-..+ .-|..|+|.|+++..+
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 4566889999999999999998887655432 33344 6778899999988764
No 330
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.32 E-value=1e+02 Score=20.43 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=30.3
Q ss_pred hHHHHHHhhhhC--CC-hh------HHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 50 LHFTRSLFNNVM--PP-LF------AYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 50 ~~~a~~~~~~m~--~~-~~------~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
++.|..+|+.+. .| .+ .=-..+..|.++|.+++|.+++++.-
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 678999999887 22 11 12234567888999999999999853
No 331
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=33.91 E-value=1.1e+02 Score=20.68 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHHcC-CCchHHHHHH-----------HHHHHcCCCCCCccHHHHHHHhhhhccchhh-hHHHHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKT-SCSIESIKLF-----------DEMLKTGLRPDNLTYPFVVKASDQCLLIGVG-GSVHSLIFKV 128 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~-~~~~~a~~~~-----------~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a-~~i~~~~~~~ 128 (162)
|....|+..+...+.. |++.+++..+ +.+.+.+-.+....|...|+.|. ..+..+ ..+...+-+.
T Consensus 127 p~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~~~~~~~Y~~WI~~Y~--~ef~~~v~~~~~~ld~~ 204 (248)
T 3no6_A 127 PSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS--TEMDELVDVFDQLMDRL 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTTCCTTSTTHHHHHHHH--HHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 6677888888888887 8887765433 33444433223467889999998 455444 3344444444
Q ss_pred hcCcchhHHHHHHHHHHhcCChh
Q 045917 129 GLHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 129 ~~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
+-..+......+...|.+.-++|
T Consensus 205 ~~~~s~~~~~~l~~~F~~a~~lE 227 (248)
T 3no6_A 205 TKHCSETEKKEIKENFLQSTIHE 227 (248)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHH
Confidence 43445556667777776654444
No 332
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=33.81 E-value=72 Score=20.35 Aligned_cols=67 Identities=15% Similarity=0.006 Sum_probs=38.7
Q ss_pred cCCCCCCccH--HHHHHHhhhhccchhhhHHHHHHHHH-hcCcch-------hHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 93 TGLRPDNLTY--PFVVKASDQCLLIGVGGSVHSLIFKV-GLHSDK-------YIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 93 ~~~~p~~~t~--~~li~~~~~~~~~~~a~~i~~~~~~~-~~~~~~-------~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
.|+.|....| -.-++.....+.++.|+-+-..+... +..|+. .+...+-+++...|++..|...|++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4555544433 33466667777888888777665442 223332 2456677888899999999888765
No 333
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.42 E-value=1.2e+02 Score=20.78 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHh
Q 045917 121 VHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKAL 156 (162)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~ 156 (162)
+.+.+.+.|..++..+ .+..=++.|+.+-+.-+
T Consensus 288 iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~L 320 (337)
T 4g8k_A 288 IAELLCKRGASTDCGD---LVMTARRNYDHSLVKVL 320 (337)
T ss_dssp HHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHH
Confidence 3444555565444332 23333445555544443
No 334
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.33 E-value=1e+02 Score=20.03 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=47.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCC-------ccHHHHHHHhhhh---ccchhhhHHHHHHHHHhcCc-------
Q 045917 70 LIRAYAKTSCSIESIKLFDEMLKTGLRPDN-------LTYPFVVKASDQC---LLIGVGGSVHSLIFKVGLHS------- 132 (162)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~t~~~li~~~~~~---~~~~~a~~i~~~~~~~~~~~------- 132 (162)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++ .. |+.+-++.+.+.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 344456678888777777777777765554 3344555444 44 66665555554333222100
Q ss_pred -ch-hHHHHHHHHHHhcCChhHHHHhhc
Q 045917 133 -DK-YIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 133 -~~-~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+. ..-.+.+..-+..|+.+-+..+++
T Consensus 84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 111 (256)
T 2etb_A 84 TDEFYQGHSALHIAIEKRSLQCVKLLVE 111 (256)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 00 112344555567777777766654
No 335
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=32.23 E-value=1.3e+02 Score=22.60 Aligned_cols=82 Identities=6% Similarity=-0.037 Sum_probs=53.8
Q ss_pred CCCchHHHHHHHHHHHc---CCCCCC------------ccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc--------
Q 045917 77 TSCSIESIKLFDEMLKT---GLRPDN------------LTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD-------- 133 (162)
Q Consensus 77 ~~~~~~a~~~~~~m~~~---~~~p~~------------~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~-------- 133 (162)
...++++-+++.++-.. +-.|+. ...+.+++.|.+.++...+..++..+...+..|+
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 45667777777777543 222222 2367889999999999999999999988765322
Q ss_pred hhHHHHHHH-HHHhcCChhHHHHhhc
Q 045917 134 KYIGNTLLR-MYAACKEIDFAKALFD 158 (162)
Q Consensus 134 ~~~~~~ll~-~y~~~g~~~~a~~~~~ 158 (162)
..+|...+. .++-.+++.+|.+-|.
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~ 244 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFN 244 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHH
Confidence 334444443 4456888888877653
No 336
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=31.45 E-value=2.3e+02 Score=23.63 Aligned_cols=106 Identities=9% Similarity=0.019 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhh---chhhhcchhHHHHHhcCC--CchhHHHHHHHhhCCCChHHHHHHhhhhC--CChhHHHHHHHHHH
Q 045917 3 SRQIETLIQLSK---TAHHHHQLPALFLKTSLD--HNTYIISRFILTSLPISLHFTRSLFNNVM--PPLFAYNTLIRAYA 75 (162)
Q Consensus 3 ~~~~~~~l~~~~---~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~a~~~~~~m~--~~~~~~~~li~~~~ 75 (162)
+..++...+..| ..++|.+.|+.....+-. +.+. ....+-+.+.+.-++=..+++.+. .+..-=+.++.+++
T Consensus 751 R~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~-lr~~Vyc~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ 829 (967)
T 3se6_A 751 RSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTD-VLKIVYSVGAQTTAGWNYLLEQYELSMSSAEQNKILYALS 829 (967)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHH-HHHHHHHHHTTSHHHHHHHHHHHHHCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChh-hhhHhHhhhhccHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 344455544544 456788888776654322 2221 222221222444333444555555 55555678999999
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCccHHHHHHHhh
Q 045917 76 KTSCSIESIKLFDEMLKTGLRPDNLTYPFVVKASD 110 (162)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 110 (162)
...+.....++++......... ..-...++.+..
T Consensus 830 ct~d~~ll~~~L~~~l~~~~i~-~qd~~~~~~~v~ 863 (967)
T 3se6_A 830 TSKHQEKLLKLIELGMEGKVIK-TQNLAALLHAIA 863 (967)
T ss_dssp TCCCHHHHHHHHHHHHHCSSSC-GGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCcCcCc-HhHHHHHHHHHH
Confidence 9999998888888877654322 233444555544
No 337
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=31.42 E-value=1.1e+02 Score=20.04 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=52.9
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHH-----------HHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLF-----------DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~-----------~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
|.+..|...+...+..|++.+++..+ +.+.+.+-.+....|...|+.|....--+.+..+.+.+-+.+-
T Consensus 111 p~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~ 190 (221)
T 3ibx_A 111 LANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTL 190 (221)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSSSTTTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 66777888888888888877765432 2233222112355788999998753322333444444444443
Q ss_pred CcchhHHHHHHHHHHhcCChh
Q 045917 131 HSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 131 ~~~~~~~~~ll~~y~~~g~~~ 151 (162)
..+......+...|.+.-++|
T Consensus 191 ~~~~~~~~~~~~~F~~a~~lE 211 (221)
T 3ibx_A 191 ASSKQEIEKLKEIFITTSEYE 211 (221)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHH
Confidence 445556667777776654444
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.78 E-value=1e+02 Score=19.46 Aligned_cols=49 Identities=14% Similarity=-0.137 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHHHHcCCCC--CCccHHHHHH-H-----hhhhccchhhhHHHHHHH
Q 045917 78 SCSIESIKLFDEMLKTGLRP--DNLTYPFVVK-A-----SDQCLLIGVGGSVHSLIF 126 (162)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~p--~~~t~~~li~-~-----~~~~~~~~~a~~i~~~~~ 126 (162)
|++=+|.+++++.....-.+ ....|-.||+ . ..+.|+...|..++....
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666655443333 3333444444 1 123455666665555543
No 339
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.37 E-value=1.7e+02 Score=21.69 Aligned_cols=144 Identities=6% Similarity=-0.043 Sum_probs=78.5
Q ss_pred hchhhhcchhHHHHH-hc----CCCchhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHH----HcCCC
Q 045917 14 KTAHHHHQLPALFLK-TS----LDHNTYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAY----AKTSC 79 (162)
Q Consensus 14 ~~~~~a~~~~~~~~~-~~----~~~~~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~----~~~~~ 79 (162)
+++..|.+.+-.+.+ .. ..-+......++..|. .++++.....+.-+. -.......++..+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 456666665555543 22 3334566777888888 888887766555443 1122222333322 12222
Q ss_pred chHHHHHHHHHHH--cCCCCCCc--------cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc-----hhHHHHHHHHH
Q 045917 80 SIESIKLFDEMLK--TGLRPDNL--------TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD-----KYIGNTLLRMY 144 (162)
Q Consensus 80 ~~~a~~~~~~m~~--~~~~p~~~--------t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~ll~~y 144 (162)
.+.... ..... ..+..... ....|.+.+...|++.+|..+...+..--...+ ...+-..++.|
T Consensus 110 ~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221111 11111 11222111 124567778888999999998888764322111 34667788888
Q ss_pred HhcCChhHHHHhhcc
Q 045917 145 AACKEIDFAKALFDE 159 (162)
Q Consensus 145 ~~~g~~~~a~~~~~~ 159 (162)
...+++..|..+..+
T Consensus 188 l~~~d~~~a~~~~~k 202 (445)
T 4b4t_P 188 ILKGDYSQATVLSRK 202 (445)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 999999988877654
No 340
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=30.33 E-value=1.1e+02 Score=21.42 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhHHHHHHHHH----HhcCChhHHHHhhccc
Q 045917 85 KLFDEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY----AACKEIDFAKALFDEM 160 (162)
Q Consensus 85 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y----~~~g~~~~a~~~~~~m 160 (162)
++++.+.+.|+.|.......++..+.+.=.++.+..+++.+...|...-..+.-+++..+ .+....++..++++++
T Consensus 188 ~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~l 267 (294)
T 3qwl_A 188 RLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENI 267 (294)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Confidence 456667777886543322445555555556788888888887644332233333444332 3455557778887776
Q ss_pred C
Q 045917 161 P 161 (162)
Q Consensus 161 ~ 161 (162)
+
T Consensus 268 p 268 (294)
T 3qwl_A 268 P 268 (294)
T ss_dssp C
T ss_pred C
Confidence 5
No 341
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=29.98 E-value=1e+02 Score=19.10 Aligned_cols=36 Identities=6% Similarity=-0.085 Sum_probs=19.2
Q ss_pred HHHHHhhC-CCChHHHHHHhhhhC--CChhHHHHHHHHH
Q 045917 39 SRFILTSL-PISLHFTRSLFNNVM--PPLFAYNTLIRAY 74 (162)
Q Consensus 39 ~~ll~~~~-~~~~~~a~~~~~~m~--~~~~~~~~li~~~ 74 (162)
+.++.... .|-+++.+..+.++. .+......++..|
T Consensus 11 ~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~F 49 (153)
T 3us6_A 11 VDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLF 49 (153)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 44444555 566665555555555 3444555555555
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.49 E-value=1e+02 Score=20.09 Aligned_cols=53 Identities=9% Similarity=-0.140 Sum_probs=29.9
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCCcc-------HHHHHHHhh--hhccchhhhHHHHH
Q 045917 72 RAYAKTSCSIESIKLFDEMLKTGLRPDNLT-------YPFVVKASD--QCLLIGVGGSVHSL 124 (162)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~li~~~~--~~~~~~~a~~i~~~ 124 (162)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-++.+.+.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344556777777777776666666655333 344544432 45666555555444
No 343
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.72 E-value=1.4e+02 Score=20.03 Aligned_cols=23 Identities=4% Similarity=-0.292 Sum_probs=12.1
Q ss_pred cHHHHHHHhhhhccchhhhHHHH
Q 045917 101 TYPFVVKASDQCLLIGVGGSVHS 123 (162)
Q Consensus 101 t~~~li~~~~~~~~~~~a~~i~~ 123 (162)
.....+..+.+.|.-++|.++|-
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHH
Confidence 34444555555555555555543
No 344
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.58 E-value=39 Score=21.37 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=22.3
Q ss_pred HHHHHHhhC-CCChHHHHHHhhhhC-CC
Q 045917 38 ISRFILTSL-PISLHFTRSLFNNVM-PP 63 (162)
Q Consensus 38 ~~~ll~~~~-~~~~~~a~~~~~~m~-~~ 63 (162)
...+++-|. .++.++|..-++++. |+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~ 40 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 40 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 477888888 999999999999998 54
No 345
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=27.55 E-value=1.4e+02 Score=20.05 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCCCCcc---HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchhH--HHHHHHHHHhcCChhHHHHhhc
Q 045917 86 LFDEMLKTGLRPDNLT---YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKYI--GNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t---~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~--~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+.+.+.+.|..||... .+.|..+ +..|+.+- .+.+.+.|..++... -.+.+..-+..|+.+-+.-+++
T Consensus 134 ~~~~Ll~~g~~~n~~d~~g~TpL~~A-~~~g~~~~----v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 206 (269)
T 4b93_B 134 VVKCLLDSNAKPNKKDLSGNTPLIYA-CSGGHHEL----VALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206 (269)
T ss_dssp HHHHHHHTTCCSCCCCTTCCCHHHHH-HHTTCGGG----HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCCHHH----HHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 4444556666665443 3444444 34555543 344455665443222 1334445556677766655543
No 346
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=26.95 E-value=90 Score=22.05 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=52.2
Q ss_pred hhhcchhHHHHHhcCCCchhHHHHHHHhhC---CCChHHHHHHhhhhC----------CChhHHHHHHHHHHcCCCchHH
Q 045917 17 HHHHQLPALFLKTSLDHNTYIISRFILTSL---PISLHFTRSLFNNVM----------PPLFAYNTLIRAYAKTSCSIES 83 (162)
Q Consensus 17 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~a~~~~~~m~----------~~~~~~~~li~~~~~~~~~~~a 83 (162)
.+|..+.+-|+.. ..|. ..|+..++ +.+.......|+.+- -..-.|.-++-++....--.+|
T Consensus 20 ~DA~~L~~A~kG~--Gtde---~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA 94 (321)
T 1n00_A 20 EDCEQLRKAFSGW--GTNE---GLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPAERDA 94 (321)
T ss_dssp HHHHHHHHHTSSS--SCCH---HHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCCC--CCCH---HHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCchHHHHHHHHcCChhHHHH
Confidence 4566666666543 4554 55566655 223444444454432 1223467777777765556777
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHhhhh--ccchhhhHHHHH
Q 045917 84 IKLFDEMLKTGLRPDNLTYPFVVKASDQC--LLIGVGGSVHSL 124 (162)
Q Consensus 84 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~--~~~~~a~~i~~~ 124 (162)
..+.+.|+ |...|..+ +++.++.. .++....+.+..
T Consensus 95 ~~l~~A~k--g~Gtde~~---lieIL~tRs~~ql~~i~~~Y~~ 132 (321)
T 1n00_A 95 LLANEATK--RWTSSNQV---LMEIACTRSANQLLHARQAYHA 132 (321)
T ss_dssp HHHHHHHS--SSCSSCHH---HHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhh--ccCCCHHH---HHHHHhcCCHHHHHHHHHHHHH
Confidence 78888884 45556544 44444432 234444444443
No 347
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.50 E-value=64 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
..+.+|.-|...|+.++|...++++.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHcc
Confidence 36889999999999999999999995
No 348
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=26.04 E-value=1.5e+02 Score=20.31 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHhhhhc-cchhhhHHHHHHHHHhcCcchhHHHHHHHHH----Hhc-CChhHHHHhhcc
Q 045917 86 LFDEMLKTGLRPDNLTYPFVVKASDQCL-LIGVGGSVHSLIFKVGLHSDKYIGNTLLRMY----AAC-KEIDFAKALFDE 159 (162)
Q Consensus 86 ~~~~m~~~~~~p~~~t~~~li~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~ll~~y----~~~-g~~~~a~~~~~~ 159 (162)
+++.+.+.++ +...++..++..+.+.- .++.+..+++.+...|...-..+.-+++... .++ .+.+....++.+
T Consensus 190 L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~ 268 (292)
T 4hl4_A 190 LHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQ 268 (292)
T ss_dssp HHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHS
T ss_pred HHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4555666677 45667776776665554 4888888888888776432233333333322 122 355666666655
Q ss_pred cC
Q 045917 160 MP 161 (162)
Q Consensus 160 m~ 161 (162)
++
T Consensus 269 lp 270 (292)
T 4hl4_A 269 IP 270 (292)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 349
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=26.01 E-value=1.1e+02 Score=18.36 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=63.0
Q ss_pred hhHHHHHhcCCCc---hhHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 045917 22 LPALFLKTSLDHN---TYIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT 93 (162)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (162)
+.+.+.+.|..++ ....+. +...+ .|+.+-+..+++.-. .+..-++.+.. .+..|+.+ +.+.+.+.
T Consensus 29 ~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~ 102 (169)
T 2y1l_E 29 EVRILMANGADVNAEDASGWTP-LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL-AALFGHLE----IVEVLLKN 102 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH-HHHcCCHH----HHHHHHHc
Confidence 3445555565443 222333 33334 788887777776533 33333444433 33445543 44555566
Q ss_pred CCCCCCcc---HHHHHHHhhhhccchhhhHHHHHHHHHhcCcchh--HHHHHHHHHHhcCChhHHHHhh
Q 045917 94 GLRPDNLT---YPFVVKASDQCLLIGVGGSVHSLIFKVGLHSDKY--IGNTLLRMYAACKEIDFAKALF 157 (162)
Q Consensus 94 ~~~p~~~t---~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~ll~~y~~~g~~~~a~~~~ 157 (162)
|..++... .+.+..+ ++.|+.+ +.+.+.+.|..++.. .-.+.+..-++.|+.+-+.-+.
T Consensus 103 g~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 103 GADVNANDMEGHTPLHLA-AMFGHLE----IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp TCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 66554432 3334333 4445443 455566667654432 1234555556777776655443
No 350
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=25.94 E-value=89 Score=17.16 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=7.5
Q ss_pred CChhHHHHHHHHH
Q 045917 62 PPLFAYNTLIRAY 74 (162)
Q Consensus 62 ~~~~~~~~li~~~ 74 (162)
.+...+++++.++
T Consensus 41 lsr~e~~il~qHF 53 (85)
T 3hgl_A 41 FSRVEQNIFRQHF 53 (85)
T ss_dssp CCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHC
Confidence 4555666665554
No 351
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.61 E-value=1.6e+02 Score=19.82 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=63.2
Q ss_pred chhHHHHHhcCCCch---hHHHHHHHhhC-CCChHHHHHHhhhhC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 21 QLPALFLKTSLDHNT---YIISRFILTSL-PISLHFTRSLFNNVM----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 21 ~~~~~~~~~~~~~~~---~~~~~ll~~~~-~~~~~~a~~~~~~m~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
++.+.+.+.|..++. ...+.|. ..+ .|+.+-+.-+++.-. .+..-|.+.+...+..|+.+ +.+.+.+
T Consensus 76 ~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~ 150 (285)
T 3kea_A 76 KIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLS 150 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHT
T ss_pred HHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHh
Confidence 455666666655432 2223333 333 777777777766522 34434344455555566654 4444445
Q ss_pred cCCCCCCc-cHHHHHHHhhhhccchhhhHHHHHHHHHhcCcc---hhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 93 TGLRPDNL-TYPFVVKASDQCLLIGVGGSVHSLIFKVGLHSD---KYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 93 ~~~~p~~~-t~~~li~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
.|..+... .-.+.+...+..|+.+-++-+. +.|..++ ..-+++.+..-++.|+.+-+.-+++
T Consensus 151 ~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~ 216 (285)
T 3kea_A 151 EIPSTFDLAILLSCIHITIKNGHVDMMILLL----DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK 216 (285)
T ss_dssp TSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH----HHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTT
T ss_pred CCCccccccCCccHHHHHHHcChHHHHHHHH----HcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH
Confidence 55444222 3334444445666655444443 3343222 2223334555556677666655543
No 352
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=25.37 E-value=1.5e+02 Score=19.55 Aligned_cols=88 Identities=9% Similarity=-0.074 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHcC-CCchHHHHHH-------H----HHHHcCCCCCCccHHHHHHHhhhhccchhh-hHHHHHHHHH
Q 045917 62 PPLFAYNTLIRAYAKT-SCSIESIKLF-------D----EMLKTGLRPDNLTYPFVVKASDQCLLIGVG-GSVHSLIFKV 128 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~-~~~~~a~~~~-------~----~m~~~~~~p~~~t~~~li~~~~~~~~~~~a-~~i~~~~~~~ 128 (162)
|.+..|+..+...+.. |++.+++..+ . .+.+.+..+....|...|+.|. ..+..+ ..+...+-+.
T Consensus 108 p~~~aY~~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~--~~f~~~v~~~~~~ld~~ 185 (229)
T 4fn6_A 108 PSGDHYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYS--TEMDDIINVFESLMNKL 185 (229)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCTTCCTTSTHHHHHHHHT--TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHh--HHHHHHHHHHHHHHHHH
Confidence 6677788888888877 8887765432 2 3333332223457899999998 455444 3334444444
Q ss_pred hcCcchhHHHHHHHHHHhcCChh
Q 045917 129 GLHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 129 ~~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
+-..+......+...|.+.-++|
T Consensus 186 ~~~~~~~~~~~~~~~F~~a~~lE 208 (229)
T 4fn6_A 186 AESMSDKELEQVKQVFLESCIHE 208 (229)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHH
Confidence 43345556666777776654444
No 353
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.28 E-value=51 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
.-..+|.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 35678999999999999999999985
No 354
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=25.20 E-value=1.3e+02 Score=18.88 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=18.0
Q ss_pred hhHHHHHhcCCCch---hHHHHHHHhhC-CCChHHHHHHhhh
Q 045917 22 LPALFLKTSLDHNT---YIISRFILTSL-PISLHFTRSLFNN 59 (162)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~ll~~~~-~~~~~~a~~~~~~ 59 (162)
+.+.+.+.|..++. ...+.| ...+ .|+.+-+..+++.
T Consensus 40 ~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 40 AAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRN 80 (223)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHB
T ss_pred HHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHc
Confidence 44445555554432 222232 3333 6777666666654
No 355
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.20 E-value=1.5e+02 Score=19.44 Aligned_cols=86 Identities=12% Similarity=-0.008 Sum_probs=60.6
Q ss_pred HHHHHHHhhC--CCChHHHHHHhhhhC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC---------------
Q 045917 37 IISRFILTSL--PISLHFTRSLFNNVM-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD--------------- 98 (162)
Q Consensus 37 ~~~~ll~~~~--~~~~~~a~~~~~~m~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------- 98 (162)
-|..|+..-. .|....+.-++.... -+..=|..+ +|-+..+...|..-+....+..+..|
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 4666665444 888888888877766 444445555 67788999999999999987766533
Q ss_pred -Cc-cHHHHHHHhhhhccchhhhHHHHH
Q 045917 99 -NL-TYPFVVKASDQCLLIGVGGSVHSL 124 (162)
Q Consensus 99 -~~-t~~~li~~~~~~~~~~~a~~i~~~ 124 (162)
.. -++.+..-|...|+.++|...+..
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 11 245666778888998888876543
No 356
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.58 E-value=1.5e+02 Score=19.31 Aligned_cols=110 Identities=12% Similarity=0.134 Sum_probs=62.9
Q ss_pred HHHHhhC-CCChHHHHHHhhhhC-C----ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc---cHHHHHHHhh
Q 045917 40 RFILTSL-PISLHFTRSLFNNVM-P----PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL---TYPFVVKASD 110 (162)
Q Consensus 40 ~ll~~~~-~~~~~~a~~~~~~m~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~li~~~~ 110 (162)
..+...+ .|+++.+..+++.-. + +..-++. +...+..|+. ++++.+.+.|..|+.. -.+.+..+ +
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~-L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLA-A 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHH-H
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH-HHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHH-H
Confidence 3444445 899998888887654 2 2222333 4444555665 4555566667666543 23344433 4
Q ss_pred hhccchhhhHHHHHHHHHhcCcchhH--HHHHHHHHHhcCChhHHHHhhcc
Q 045917 111 QCLLIGVGGSVHSLIFKVGLHSDKYI--GNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 111 ~~~~~~~a~~i~~~~~~~~~~~~~~~--~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
..|+.+ +++.+.+.|..++... -.+.+..-+..|+.+-+..+++.
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh
Confidence 555543 5556666776554322 23456666788888877776654
No 357
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.33 E-value=52 Score=19.56 Aligned_cols=44 Identities=7% Similarity=0.166 Sum_probs=21.2
Q ss_pred hHHHHHHhhhhC------CChhHHHHHHHHHHc---CCCchHHHHHHHHHHHcCCC
Q 045917 50 LHFTRSLFNNVM------PPLFAYNTLIRAYAK---TSCSIESIKLFDEMLKTGLR 96 (162)
Q Consensus 50 ~~~a~~~~~~m~------~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~ 96 (162)
+++|...+..|+ -.+..||..|..+-. .++. .++|..+++.++.
T Consensus 43 y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 43 FMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 444555555544 345566666655542 2222 3445555554443
No 358
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=23.24 E-value=1.6e+02 Score=19.03 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=14.9
Q ss_pred CCChHHHHHHhhhhC---CChhHHHHHHHHHHc
Q 045917 47 PISLHFTRSLFNNVM---PPLFAYNTLIRAYAK 76 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~---~~~~~~~~li~~~~~ 76 (162)
....+++..+++.+- ....+|...+..+..
T Consensus 83 ~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~ 115 (220)
T 3sjs_A 83 RLSPQTALRMMRIFDTDFNGHISFYEFMAMYKF 115 (220)
T ss_dssp CCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 334445555555553 334555555554444
No 359
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.93 E-value=28 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=14.8
Q ss_pred hhHHHHHhcCCCchhHHHHHHHhhC
Q 045917 22 LPALFLKTSLDHNTYIISRFILTSL 46 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~ 46 (162)
.++.+.++|-|-|....|.||+.-.
T Consensus 21 ~L~~Lirs~~PeDL~~AN~LiK~m~ 45 (158)
T 1naf_A 21 MLARLLKSSHPEDLRAANKLIKEMV 45 (158)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHh
Confidence 4556666666666666666665544
No 360
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=22.93 E-value=85 Score=15.87 Aligned_cols=34 Identities=6% Similarity=0.077 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHcCCCCCCccHHHHHHHhhhhc
Q 045917 80 SIESIKLFDEMLKTGLRPDNLTYPFVVKASDQCL 113 (162)
Q Consensus 80 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 113 (162)
.++..++..+=++.|-.+...+|++..+.+...|
T Consensus 12 ~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 12 VYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp HHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 3445555666666677777777766666655443
No 361
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=22.86 E-value=1.8e+02 Score=19.46 Aligned_cols=13 Identities=8% Similarity=0.278 Sum_probs=7.6
Q ss_pred CCChHHHHHHhhh
Q 045917 47 PISLHFTRSLFNN 59 (162)
Q Consensus 47 ~~~~~~a~~~~~~ 59 (162)
.|+.+-+..+++.
T Consensus 121 ~g~~~~v~~Ll~~ 133 (276)
T 4hbd_A 121 HANFPVVQQLLDS 133 (276)
T ss_dssp TTCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHC
Confidence 5666666655553
No 362
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=22.30 E-value=1.7e+02 Score=19.09 Aligned_cols=88 Identities=5% Similarity=0.024 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHH-----------HHHHHcCCCCCCccHHHHHHHhhhhccchhhhHHHHHHHHHhc
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIKLF-----------DEMLKTGLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFKVGL 130 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~-----------~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~~~~ 130 (162)
|.+..|+..+...+..|++.+++..+ +.+.+.. .|+ ..|...|+.|....--+.+..+.+.+.+..-
T Consensus 100 p~t~aY~~~l~~~a~~~~~~~~laAl~pc~~~Y~~i~~~l~~~~-~~~-~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~ 177 (220)
T 1rtw_A 100 WRAKSYVNYLLSVASLGSFLEGFTALYCEEKAYYEAWKWVRENL-KER-SPYQEFINHWSSQEFGEYVKRIEKILNSLAE 177 (220)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC-SSC-CTTHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC-chHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 55667777777777777776665443 2233332 254 5678888888765322233333333333222
Q ss_pred CcchhHHHHHHHHHHhcCChh
Q 045917 131 HSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 131 ~~~~~~~~~ll~~y~~~g~~~ 151 (162)
.++......+...|.+.-++|
T Consensus 178 ~~~~~~~~~~~~~f~~a~~lE 198 (220)
T 1rtw_A 178 KHGEFEKERAREVFKEVSKFE 198 (220)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHH
Confidence 234445555666665544433
No 363
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=21.67 E-value=1.4e+02 Score=18.00 Aligned_cols=101 Identities=7% Similarity=-0.046 Sum_probs=44.4
Q ss_pred HHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCCccHHHHHHHhhhhccchhhhHHHHHHHH
Q 045917 52 FTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNLTYPFVVKASDQCLLIGVGGSVHSLIFK 127 (162)
Q Consensus 52 ~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~~~~a~~i~~~~~~ 127 (162)
.+..+++.+- ....+|...+..+.+. +....+|+..-.. .-..+..-+..++..+...-.-+++..++....
T Consensus 48 ~~~~l~~~~D~~~~g~i~~~eF~~~~~~~---~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d- 123 (173)
T 1alv_A 48 TCRSMVAVMDSDTTGKLGFEEFKYLWNNI---KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS- 123 (173)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHHHHH---HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCCCCccCHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc-
Confidence 4444555443 2345555555554432 3444555544322 123344445455544332222233444444332
Q ss_pred HhcCcchhHHHHHHHHHHhcCChhHHHHhhc
Q 045917 128 VGLHSDKYIGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 128 ~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
. ......|...+..+.+...+..+.+.|+
T Consensus 124 d--~dg~i~~~eF~~~~~~~~~~~~~F~~~D 152 (173)
T 1alv_A 124 D--EGGNMDFDNFISCLVRLDAMFRAFKSLD 152 (173)
T ss_dssp C--SSSCBCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred C--CCCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 1224556666666655544555554444
No 364
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=21.04 E-value=2.4e+02 Score=21.55 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=50.6
Q ss_pred CChhHHHHHHHHHHcCCCchHHHH-------HHHHHHHc----CCCCCCccHHHHHHHhhhhccchh-hhHHHHHHHHHh
Q 045917 62 PPLFAYNTLIRAYAKTSCSIESIK-------LFDEMLKT----GLRPDNLTYPFVVKASDQCLLIGV-GGSVHSLIFKVG 129 (162)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~-------~~~~m~~~----~~~p~~~t~~~li~~~~~~~~~~~-a~~i~~~~~~~~ 129 (162)
|....|+..+...+..|++.+.+. +|.+.-+. .-.+....|...|+.|... .+.+ +..+.+.+-+..
T Consensus 439 p~~~aYt~~l~~~a~~g~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~~-~f~~~v~~~~~~ld~~~ 517 (550)
T 3rm5_A 439 PALRAYSRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASS-WYREAMDEGEKLLNHIL 517 (550)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTCCCSCTTSHHHHHHHHTTSH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHhCCH-HHHHHHHHHHHHHHHHH
Confidence 567778888888888888877543 23333221 1112344688999998753 3333 333333343333
Q ss_pred cCcchhHHHHHHHHHHhcCChh
Q 045917 130 LHSDKYIGNTLLRMYAACKEID 151 (162)
Q Consensus 130 ~~~~~~~~~~ll~~y~~~g~~~ 151 (162)
-..+......+...|.+.-++|
T Consensus 518 ~~~~~~~~~~l~~~F~~a~~lE 539 (550)
T 3rm5_A 518 ETYPPEQLDTLVTIYAEVCELE 539 (550)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHH
Confidence 3334455666667766655444
No 365
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.94 E-value=37 Score=24.16 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHH
Q 045917 66 AYNTLIRAYAKTSCSIESIKLFDEML 91 (162)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (162)
..+.++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35678899999999999999988884
No 366
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=20.77 E-value=1.4e+02 Score=17.48 Aligned_cols=49 Identities=18% Similarity=0.094 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH--cCCC-----------CCCccHHHHHHHhhhhcc---chhhhHHHHHHHHHhc
Q 045917 82 ESIKLFDEMLK--TGLR-----------PDNLTYPFVVKASDQCLL---IGVGGSVHSLIFKVGL 130 (162)
Q Consensus 82 ~a~~~~~~m~~--~~~~-----------p~~~t~~~li~~~~~~~~---~~~a~~i~~~~~~~~~ 130 (162)
...+++.+|+. .|++ |+..+=+-+++.+.+.+. -++|..+-..+.+.|+
T Consensus 7 ~l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 7 GLGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp THHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 45678888874 5665 456666777777777663 3677788888888886
No 367
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.76 E-value=3.6e+02 Score=22.22 Aligned_cols=90 Identities=10% Similarity=0.009 Sum_probs=50.2
Q ss_pred hhhhcchhHHHHHhc----CCCch--hHHHHHHHhhCCCChHHHHHHhhhhC--CChhHHHHHHHHHHcCCCchHHHHHH
Q 045917 16 AHHHHQLPALFLKTS----LDHNT--YIISRFILTSLPISLHFTRSLFNNVM--PPLFAYNTLIRAYAKTSCSIESIKLF 87 (162)
Q Consensus 16 ~~~a~~~~~~~~~~~----~~~~~--~~~~~ll~~~~~~~~~~a~~~~~~m~--~~~~~~~~li~~~~~~~~~~~a~~~~ 87 (162)
.+.|.+.++.....+ ++|+. .+|...++ .|.-++-..+++.+. .+..--..++.+++...+.....+++
T Consensus 705 ~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~---~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~~~~d~~~l~~~L 781 (909)
T 4fke_A 705 ENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIA---QGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYL 781 (909)
T ss_dssp HHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHH---HSCHHHHHHHHHHHHHCCSHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456777776655422 44542 22222222 465555555666665 44555677888888888887777777
Q ss_pred HHHHHcC-CCCCCccHHHHHHHhh
Q 045917 88 DEMLKTG-LRPDNLTYPFVVKASD 110 (162)
Q Consensus 88 ~~m~~~~-~~p~~~t~~~li~~~~ 110 (162)
+.....+ +++. -...++.+..
T Consensus 782 ~~~l~~~~ir~q--d~~~~~~~v~ 803 (909)
T 4fke_A 782 GYTLNPDLIRKQ--DATSTINSIA 803 (909)
T ss_dssp HHTTCTTTSCGG--GHHHHHHHHH
T ss_pred HHHhCCCCCchh--hHHHHHHHHh
Confidence 7665433 3332 2334555544
No 368
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.60 E-value=65 Score=22.77 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++..+.+.|+.|..+.+.=++..|++.=.++.+.++||-
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~ 253 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDV 253 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHH
Confidence 3566677788989888888888899988889999999874
No 369
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=20.45 E-value=75 Score=22.08 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHhcCChhHHHHhhcc
Q 045917 120 SVHSLIFKVGLHSDKYIGNTLLRMYAACKEIDFAKALFDE 159 (162)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~ll~~y~~~g~~~~a~~~~~~ 159 (162)
+++..+.+.|+.|...+..=++..|++.=.++.+.++||-
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~ 214 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDL 214 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3667777889999888888899999988889999998874
No 370
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=20.38 E-value=1.5e+02 Score=17.73 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=58.9
Q ss_pred CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCc---cHHHHHHHhhhhccchhh
Q 045917 47 PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNL---TYPFVVKASDQCLLIGVG 118 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~li~~~~~~~~~~~a 118 (162)
.|+.+.+..+++.-. ++..-++.+..+ +..|+.+ +++.+.+.|..++.. -.+.+..+ +..|+.+
T Consensus 12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~-- 83 (172)
T 3v30_A 12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFGEIE----TVRFLLEWGADPHILAKERESALSLA-STGGYTD-- 83 (172)
T ss_dssp TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH-HHTTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHH-HHTTCHH--
T ss_pred cCCHHHHHHHHHcCcccccCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCchhhcccCCCHHHHH-HHCCCHH--
Confidence 788999888888754 444445555444 4556654 444455556655443 23344433 4555544
Q ss_pred hHHHHHHHHHhcCcchhH--HHHHHHHHHhcCChhHHHHhhc
Q 045917 119 GSVHSLIFKVGLHSDKYI--GNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 119 ~~i~~~~~~~~~~~~~~~--~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
+.+.+.+.|..++... -.+.+..-+..|+.+-+..+++
T Consensus 84 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (172)
T 3v30_A 84 --IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123 (172)
T ss_dssp --HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4555666676554322 2345666677888887776664
No 371
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.23 E-value=1.7e+02 Score=18.36 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=55.3
Q ss_pred CCChHHHHHHhhhhC-----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CC----CCCccHHHHHHHhhhhccc
Q 045917 47 PISLHFTRSLFNNVM-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG--LR----PDNLTYPFVVKASDQCLLI 115 (162)
Q Consensus 47 ~~~~~~a~~~~~~m~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~----p~~~t~~~li~~~~~~~~~ 115 (162)
.|+.+.+..+++.-. .+..-++.+.. .+..|+.+ +++.+.+.| .. ++..-.+.+..+ +..|+.
T Consensus 12 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~ 85 (228)
T 2dzn_A 12 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHW-SVSFQAHE----ITSFLLSKMENVNLDDYPDDSGWTPFHIA-CSVGNL 85 (228)
T ss_dssp TTCHHHHHHHHHHCGGGTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCCHHHHH-HHHCCH
T ss_pred hCCHHHHHHHHhcCccccccCCCCCCCHHHH-HHHcCCHH----HHHHHHhccccccccccCCCCCCCHHHHH-HHcCCH
Confidence 788888888887654 23333444433 34455543 455555666 32 223334555544 345543
Q ss_pred hhhhHHHHHHHHHhcCcchh----HHHHHHHHHHhcCChhHHHHhhc
Q 045917 116 GVGGSVHSLIFKVGLHSDKY----IGNTLLRMYAACKEIDFAKALFD 158 (162)
Q Consensus 116 ~~a~~i~~~~~~~~~~~~~~----~~~~ll~~y~~~g~~~~a~~~~~ 158 (162)
++++.+.+.|..++.. .-.+.+..-+..|+.+-+..+++
T Consensus 86 ----~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 86 ----EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp ----HHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 3555666666323222 12345666667888887776654
No 372
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.06 E-value=97 Score=20.05 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHhhhhC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045917 51 HFTRSLFNNVM---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 92 (162)
Q Consensus 51 ~~a~~~~~~m~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (162)
.......+.++ .+-.-.=.+|.|+.+.|++++|.+...++..
T Consensus 16 ~~~~~~~~~LR~qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 16 ALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444 3333334578899999999999999887643
Done!