Query 045919
Match_columns 277
No_of_seqs 440 out of 2390
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 2.7E-22 5.8E-27 188.0 5.6 56 222-277 229-284 (526)
2 TIGR01557 myb_SHAQKYF myb-like 99.8 1.6E-19 3.5E-24 129.6 4.7 50 228-277 1-51 (57)
3 COG0745 OmpR Response regulato 99.2 1.7E-11 3.8E-16 110.5 8.3 71 1-71 48-121 (229)
4 COG4566 TtrR Response regulato 99.1 1.6E-10 3.4E-15 101.3 7.1 71 1-71 53-125 (202)
5 COG2204 AtoC Response regulato 99.0 1.4E-09 3.1E-14 107.0 8.9 71 1-71 53-125 (464)
6 COG4565 CitB Response regulato 98.9 4.4E-09 9.5E-14 93.7 8.0 71 1-71 51-123 (224)
7 PF00072 Response_reg: Respons 98.9 9E-09 2E-13 79.7 7.6 63 1-63 48-112 (112)
8 COG4753 Response regulator con 98.8 7.5E-09 1.6E-13 102.0 8.1 75 1-75 53-129 (475)
9 COG3437 Response regulator con 98.7 2.5E-08 5.4E-13 94.8 7.3 74 1-74 63-141 (360)
10 COG2197 CitB Response regulato 98.7 5E-08 1.1E-12 86.8 8.1 69 1-69 51-121 (211)
11 PRK10046 dpiA two-component re 98.7 9.6E-08 2.1E-12 84.5 9.4 70 1-70 55-126 (225)
12 PRK11475 DNA-binding transcrip 98.7 9.8E-08 2.1E-12 84.9 8.5 69 2-70 46-117 (207)
13 PLN03029 type-a response regul 98.6 1.6E-07 3.4E-12 83.9 9.0 71 1-71 77-151 (222)
14 PRK10529 DNA-binding transcrip 98.6 1.9E-07 4.1E-12 80.6 8.9 69 1-69 50-119 (225)
15 PRK11173 two-component respons 98.6 2.6E-07 5.7E-12 81.0 8.8 70 1-70 52-122 (237)
16 PRK10430 DNA-binding transcrip 98.6 3.1E-07 6.7E-12 81.8 9.2 69 1-69 54-124 (239)
17 COG3706 PleD Response regulato 98.5 2.8E-07 6.1E-12 90.3 8.9 72 1-72 181-256 (435)
18 PRK10816 DNA-binding transcrip 98.5 3.7E-07 8E-12 78.9 8.8 69 1-69 49-119 (223)
19 PRK10643 DNA-binding transcrip 98.5 4.2E-07 9.1E-12 77.7 9.0 70 1-70 49-120 (222)
20 PRK09836 DNA-binding transcrip 98.5 3.9E-07 8.6E-12 78.9 8.9 68 1-68 49-118 (227)
21 PRK10766 DNA-binding transcrip 98.5 4E-07 8.6E-12 78.4 8.8 70 1-70 51-121 (221)
22 KOG0519 Sensory transduction h 98.5 1.9E-07 4.1E-12 97.8 7.7 67 1-67 716-785 (786)
23 PRK10955 DNA-binding transcrip 98.5 6E-07 1.3E-11 77.6 8.8 69 1-69 49-118 (232)
24 COG0784 CheY FOG: CheY-like re 98.5 8.3E-07 1.8E-11 70.3 8.7 67 1-67 56-125 (130)
25 PRK10336 DNA-binding transcrip 98.5 7.5E-07 1.6E-11 76.1 8.8 69 1-69 49-119 (219)
26 PRK09581 pleD response regulat 98.5 3.7E-07 7.9E-12 86.8 7.4 69 1-69 203-275 (457)
27 PRK10693 response regulator of 98.5 7.3E-07 1.6E-11 83.2 9.1 68 1-68 22-92 (303)
28 PRK10701 DNA-binding transcrip 98.5 8.6E-07 1.9E-11 77.7 9.0 70 1-70 50-120 (240)
29 PRK09468 ompR osmolarity respo 98.4 7.6E-07 1.6E-11 77.9 8.6 69 1-69 54-124 (239)
30 PRK11517 transcriptional regul 98.4 8.8E-07 1.9E-11 76.1 8.7 69 1-69 49-118 (223)
31 TIGR01387 cztR_silR_copR heavy 98.4 9.1E-07 2E-11 75.4 8.4 70 1-70 47-118 (218)
32 PRK13856 two-component respons 98.4 1.1E-06 2.3E-11 77.6 9.0 69 1-69 50-120 (241)
33 PRK10161 transcriptional regul 98.4 1.2E-06 2.6E-11 76.0 9.0 68 1-68 51-122 (229)
34 CHL00148 orf27 Ycf27; Reviewed 98.4 1.4E-06 3E-11 75.7 9.1 69 1-69 55-124 (240)
35 TIGR03787 marine_sort_RR prote 98.4 1.5E-06 3.3E-11 75.1 9.3 69 1-69 49-121 (227)
36 PRK11083 DNA-binding response 98.4 1E-06 2.2E-11 75.6 8.0 69 1-69 52-122 (228)
37 TIGR02154 PhoB phosphate regul 98.4 1.3E-06 2.8E-11 74.7 8.3 69 1-69 51-123 (226)
38 PRK10840 transcriptional regul 98.4 1.6E-06 3.5E-11 75.7 8.7 68 1-68 54-126 (216)
39 TIGR02875 spore_0_A sporulatio 98.4 1.6E-06 3.5E-11 77.9 8.5 68 1-68 53-124 (262)
40 PRK09935 transcriptional regul 98.3 2.5E-06 5.4E-11 72.2 8.4 69 1-69 54-124 (210)
41 PRK09958 DNA-binding transcrip 98.3 2.6E-06 5.5E-11 72.3 8.3 68 1-68 50-119 (204)
42 PRK10360 DNA-binding transcrip 98.3 2.7E-06 5.8E-11 71.7 8.0 67 1-68 52-118 (196)
43 PRK09483 response regulator; P 98.3 3.4E-06 7.4E-11 72.2 8.2 69 1-69 52-122 (217)
44 COG4567 Response regulator con 98.3 1.3E-06 2.8E-11 74.6 5.2 64 1-64 58-123 (182)
45 PRK14084 two-component respons 98.3 3.8E-06 8.2E-11 74.4 8.4 67 1-69 51-119 (246)
46 PRK10841 hybrid sensory kinase 98.2 3.6E-06 7.8E-11 89.7 9.5 70 1-70 850-921 (924)
47 TIGR02915 PEP_resp_reg putativ 98.2 4.2E-06 9.1E-11 81.3 8.7 68 1-68 45-119 (445)
48 PRK11107 hybrid sensory histid 98.2 3.2E-06 6.9E-11 88.3 8.2 68 1-68 716-787 (919)
49 PRK11466 hybrid sensory histid 98.2 4E-06 8.7E-11 87.9 8.6 69 1-69 731-801 (914)
50 PRK15479 transcriptional regul 98.2 8.9E-06 1.9E-10 69.4 9.0 70 1-70 49-120 (221)
51 PRK15347 two component system 98.1 7.3E-06 1.6E-10 85.7 9.0 68 1-68 739-812 (921)
52 PRK15115 response regulator Gl 98.1 6E-06 1.3E-10 80.1 7.7 69 1-69 54-124 (444)
53 PRK10100 DNA-binding transcrip 98.1 7.8E-06 1.7E-10 73.1 7.7 67 1-69 57-128 (216)
54 PRK10710 DNA-binding transcrip 98.1 1.3E-05 2.7E-10 69.6 8.9 69 1-69 59-128 (240)
55 PRK10923 glnG nitrogen regulat 98.1 1.1E-05 2.5E-10 78.9 9.2 69 1-69 52-122 (469)
56 TIGR01818 ntrC nitrogen regula 98.1 1.1E-05 2.3E-10 78.7 8.8 69 1-69 47-117 (463)
57 PRK11361 acetoacetate metaboli 98.1 8E-06 1.7E-10 79.3 7.9 68 1-68 53-122 (457)
58 TIGR02956 TMAO_torS TMAO reduc 98.1 9.5E-06 2.1E-10 85.4 8.9 68 1-68 751-823 (968)
59 PRK10365 transcriptional regul 98.1 6.8E-06 1.5E-10 79.4 7.1 69 1-69 54-124 (441)
60 PRK11697 putative two-componen 98.1 1.1E-05 2.5E-10 70.7 7.9 67 1-69 52-119 (238)
61 COG3947 Response regulator con 98.1 3.2E-06 7E-11 78.9 4.5 67 1-69 49-117 (361)
62 PRK10610 chemotaxis regulatory 98.1 3.1E-05 6.8E-10 58.5 9.2 68 1-68 55-126 (129)
63 PRK09581 pleD response regulat 98.1 2E-05 4.3E-10 74.9 9.5 70 1-70 51-124 (457)
64 PRK10403 transcriptional regul 98.1 1.7E-05 3.7E-10 66.9 8.0 68 1-68 57-126 (215)
65 PRK15369 two component system 98.1 1.9E-05 4.2E-10 65.9 8.2 68 1-68 54-123 (211)
66 PRK10651 transcriptional regul 98.0 2.6E-05 5.6E-10 65.9 8.2 69 1-69 57-127 (216)
67 PRK09959 hybrid sensory histid 98.0 2.1E-05 4.5E-10 85.1 9.0 67 1-67 1007-1075(1197)
68 PRK09390 fixJ response regulat 98.0 2.1E-05 4.5E-10 65.4 6.9 69 1-69 52-122 (202)
69 PRK12555 chemotaxis-specific m 97.9 3.8E-05 8.3E-10 72.3 8.1 67 1-67 51-129 (337)
70 PRK11091 aerobic respiration c 97.9 4.5E-05 9.7E-10 79.0 8.5 68 1-69 574-646 (779)
71 PRK13435 response regulator; P 97.8 5.9E-05 1.3E-09 61.3 7.1 67 1-70 55-123 (145)
72 cd00156 REC Signal receiver do 97.7 0.00011 2.4E-09 52.5 6.1 65 1-65 46-112 (113)
73 PRK13558 bacterio-opsin activa 97.7 0.00011 2.4E-09 74.7 8.0 68 1-68 56-127 (665)
74 PRK00742 chemotaxis-specific m 97.6 0.00019 4.2E-09 67.9 8.1 54 1-54 54-110 (354)
75 COG3707 AmiR Response regulato 97.6 0.00025 5.3E-09 62.7 8.0 71 1-71 55-126 (194)
76 PRK09191 two-component respons 97.6 0.00028 6.1E-09 62.7 7.9 69 1-71 187-257 (261)
77 PRK13837 two-component VirA-li 97.2 0.00087 1.9E-08 70.5 7.4 64 5-69 750-815 (828)
78 PRK13557 histidine kinase; Pro 97.1 0.0009 2E-08 65.0 6.7 68 1-68 465-535 (540)
79 COG2201 CheB Chemotaxis respon 97.1 0.0013 2.8E-08 63.1 7.1 54 1-54 52-108 (350)
80 PRK15411 rcsA colanic acid cap 97.0 0.0014 3E-08 58.0 6.2 68 1-69 52-124 (207)
81 COG3279 LytT Response regulato 96.7 0.0028 6E-08 57.8 5.1 66 1-68 52-119 (244)
82 COG3706 PleD Response regulato 96.6 0.0017 3.6E-08 64.1 3.5 70 1-70 37-106 (435)
83 PF00249 Myb_DNA-binding: Myb- 96.3 0.0043 9.3E-08 42.3 2.9 45 230-277 1-45 (48)
84 smart00426 TEA TEA domain. 94.1 0.069 1.5E-06 39.7 3.6 46 232-277 5-66 (68)
85 PRK15029 arginine decarboxylas 92.1 0.34 7.5E-06 51.2 6.7 69 1-70 58-135 (755)
86 PRK11107 hybrid sensory histid 90.6 0.79 1.7E-05 48.1 7.6 66 1-66 581-650 (919)
87 TIGR03815 CpaE_hom_Actino heli 87.8 0.93 2E-05 42.4 5.2 44 22-65 41-85 (322)
88 cd04724 Tryptophan_synthase_al 77.9 12 0.00027 33.8 8.1 57 10-66 63-126 (242)
89 TIGR00343 pyridoxal 5'-phospha 74.6 12 0.00026 35.3 7.2 68 10-77 184-259 (287)
90 PLN02591 tryptophan synthase 71.8 17 0.00036 33.5 7.3 56 11-66 66-128 (250)
91 PRK04180 pyridoxal biosynthesi 70.7 18 0.0004 34.2 7.4 68 10-77 190-265 (293)
92 cd04727 pdxS PdxS is a subunit 70.5 19 0.00041 33.9 7.5 68 10-77 181-256 (283)
93 TIGR00262 trpA tryptophan synt 69.6 21 0.00046 32.8 7.6 55 11-65 74-136 (256)
94 PRK13111 trpA tryptophan synth 69.3 20 0.00043 33.1 7.3 55 11-65 76-138 (258)
95 PF01285 TEA: TEA/ATTS domain 66.8 3.5 7.7E-05 40.9 2.0 50 227-277 46-110 (431)
96 CHL00200 trpA tryptophan synth 65.6 24 0.00052 32.7 7.1 55 11-65 79-140 (263)
97 CHL00162 thiG thiamin biosynth 62.9 48 0.001 31.0 8.4 59 13-71 179-243 (267)
98 cd04728 ThiG Thiazole synthase 61.7 62 0.0013 30.0 8.9 59 12-70 164-228 (248)
99 PRK12704 phosphodiesterase; Pr 60.1 12 0.00027 38.0 4.4 48 22-69 249-298 (520)
100 PF05690 ThiG: Thiazole biosyn 58.7 48 0.001 30.6 7.5 58 13-70 165-228 (247)
101 cd00331 IGPS Indole-3-glycerol 57.0 47 0.001 29.1 7.2 56 10-65 59-117 (217)
102 PRK00208 thiG thiazole synthas 56.6 73 0.0016 29.5 8.5 59 12-70 164-228 (250)
103 TIGR00640 acid_CoA_mut_C methy 53.0 1.1E+02 0.0023 25.2 8.3 55 14-68 73-129 (132)
104 PF03709 OKR_DC_1_N: Orn/Lys/A 52.4 40 0.00088 26.8 5.5 58 11-68 54-114 (115)
105 PRK00043 thiE thiamine-phospha 51.3 81 0.0018 27.0 7.7 40 10-50 146-187 (212)
106 cd02071 MM_CoA_mut_B12_BD meth 49.6 1E+02 0.0022 24.6 7.5 51 13-63 69-121 (122)
107 PRK13125 trpA tryptophan synth 48.4 83 0.0018 28.4 7.5 53 13-65 64-125 (244)
108 TIGR01037 pyrD_sub1_fam dihydr 48.3 61 0.0013 29.9 6.8 56 13-68 224-286 (300)
109 PF04131 NanE: Putative N-acet 44.3 57 0.0012 29.1 5.5 43 9-51 131-173 (192)
110 KOG4175 Tryptophan synthase al 43.8 70 0.0015 29.1 6.0 54 12-65 83-144 (268)
111 PRK01130 N-acetylmannosamine-6 42.8 1.1E+02 0.0023 27.0 7.2 41 11-51 161-202 (221)
112 cd00167 SANT 'SWI3, ADA2, N-Co 42.5 65 0.0014 19.9 4.4 40 232-275 1-40 (45)
113 PF01408 GFO_IDH_MocA: Oxidore 42.4 47 0.001 25.6 4.4 47 22-68 62-112 (120)
114 PRK13585 1-(5-phosphoribosyl)- 41.9 1.1E+02 0.0025 27.0 7.3 51 11-61 181-238 (241)
115 PRK11840 bifunctional sulfur c 41.7 1.6E+02 0.0034 28.5 8.4 60 12-71 238-303 (326)
116 COG0159 TrpA Tryptophan syntha 40.9 1.3E+02 0.0028 28.2 7.5 51 11-61 81-139 (265)
117 smart00717 SANT SANT SWI3, AD 38.9 83 0.0018 19.6 4.5 41 231-275 2-42 (49)
118 PF06490 FleQ: Flagellar regul 37.5 69 0.0015 25.4 4.6 49 12-65 57-107 (109)
119 cd04740 DHOD_1B_like Dihydroor 37.0 1.3E+02 0.0027 27.7 7.0 38 12-49 220-258 (296)
120 cd04729 NanE N-acetylmannosami 35.6 97 0.0021 27.2 5.8 42 10-51 164-206 (219)
121 TIGR01163 rpe ribulose-phospha 35.3 1.6E+02 0.0034 25.2 6.9 52 10-62 43-97 (210)
122 PF01081 Aldolase: KDPG and KH 34.3 2.1E+02 0.0045 25.4 7.6 58 2-59 37-95 (196)
123 cd04732 HisA HisA. Phosphorib 33.6 1.1E+02 0.0023 26.9 5.7 39 12-50 179-218 (234)
124 PRK06512 thiamine-phosphate py 33.1 1.8E+02 0.0038 26.1 7.1 57 10-67 151-213 (221)
125 PF00290 Trp_syntA: Tryptophan 32.8 87 0.0019 29.0 5.1 51 11-61 74-132 (259)
126 PRK07259 dihydroorotate dehydr 32.1 1.3E+02 0.0029 27.7 6.3 37 12-48 223-260 (301)
127 COG0214 SNZ1 Pyridoxine biosyn 32.1 2.8E+02 0.006 25.9 8.1 66 11-76 194-267 (296)
128 cd04730 NPD_like 2-Nitropropan 32.0 1.3E+02 0.0028 26.4 6.0 42 10-51 143-185 (236)
129 COG3010 NanE Putative N-acetyl 31.5 3.1E+02 0.0067 25.0 8.1 45 7-51 165-209 (229)
130 TIGR00007 phosphoribosylformim 31.2 1.2E+02 0.0027 26.5 5.7 39 12-50 178-217 (230)
131 COG2022 ThiG Uncharacterized e 31.0 2.4E+02 0.0052 26.2 7.4 58 13-70 172-235 (262)
132 KOG3841 TEF-1 and related tran 30.9 25 0.00054 34.5 1.2 47 230-277 76-139 (455)
133 PRK02083 imidazole glycerol ph 29.7 2.6E+02 0.0055 25.1 7.6 51 12-62 186-244 (253)
134 TIGR00735 hisF imidazoleglycer 29.4 2.5E+02 0.0055 25.3 7.6 52 12-63 188-247 (254)
135 PRK07695 transcriptional regul 29.3 2.2E+02 0.0047 24.6 6.9 38 11-49 137-175 (201)
136 PRK06015 keto-hydroxyglutarate 28.7 3E+02 0.0065 24.5 7.6 57 2-58 33-90 (201)
137 PF12776 Myb_DNA-bind_3: Myb/S 28.6 39 0.00084 25.4 1.8 45 232-276 1-58 (96)
138 PRK05718 keto-hydroxyglutarate 28.4 2.9E+02 0.0062 24.7 7.5 57 3-60 45-102 (212)
139 PRK06806 fructose-bisphosphate 26.3 2.1E+02 0.0046 26.7 6.5 41 10-50 187-229 (281)
140 COG0107 HisF Imidazoleglycerol 26.1 1.7E+02 0.0038 27.1 5.7 52 12-63 188-247 (256)
141 PRK00748 1-(5-phosphoribosyl)- 25.6 1.7E+02 0.0037 25.6 5.6 39 12-50 179-219 (233)
142 TIGR03151 enACPred_II putative 25.0 2E+02 0.0043 27.1 6.2 42 10-51 148-190 (307)
143 PRK10558 alpha-dehydro-beta-de 25.0 3.2E+02 0.007 25.0 7.4 63 2-64 46-112 (256)
144 PRK13587 1-(5-phosphoribosyl)- 25.0 1.9E+02 0.004 26.1 5.8 39 12-50 181-220 (234)
145 PRK05848 nicotinate-nucleotide 24.8 3E+02 0.0065 25.7 7.2 53 13-65 170-223 (273)
146 COG1908 FrhD Coenzyme F420-red 24.3 94 0.002 25.9 3.3 32 26-57 35-66 (132)
147 TIGR01949 AroFGH_arch predicte 23.9 3E+02 0.0064 24.9 7.0 58 11-68 180-249 (258)
148 PRK13957 indole-3-glycerol-pho 23.4 4E+02 0.0086 24.6 7.6 58 12-69 91-151 (247)
149 PF01729 QRPTase_C: Quinolinat 23.3 3.1E+02 0.0068 23.5 6.6 53 12-65 67-121 (169)
150 cd04726 KGPDC_HPS 3-Keto-L-gul 23.0 3.1E+02 0.0067 23.3 6.6 45 10-54 39-87 (202)
151 PRK01130 N-acetylmannosamine-6 22.8 4.4E+02 0.0096 22.9 7.7 39 11-49 44-93 (221)
152 COG0167 PyrD Dihydroorotate de 22.8 3.5E+02 0.0075 25.8 7.3 59 12-70 228-296 (310)
153 TIGR01182 eda Entner-Doudoroff 22.8 4.5E+02 0.0097 23.4 7.7 55 2-56 37-92 (204)
154 PRK10128 2-keto-3-deoxy-L-rham 22.7 3E+02 0.0065 25.5 6.8 63 2-64 45-111 (267)
155 COG2216 KdpB High-affinity K+ 22.5 1.4E+02 0.0031 30.9 4.8 39 14-52 455-493 (681)
156 cd00331 IGPS Indole-3-glycerol 22.4 2.2E+02 0.0048 24.8 5.6 39 12-50 159-200 (217)
157 PRK00278 trpC indole-3-glycero 22.4 4.2E+02 0.0091 24.2 7.7 58 10-67 98-158 (260)
158 PRK04302 triosephosphate isome 22.3 3.7E+02 0.008 23.7 7.1 39 13-51 162-202 (223)
159 PF00534 Glycos_transf_1: Glyc 22.3 4.1E+02 0.0089 21.2 7.0 54 11-69 106-159 (172)
160 PRK07428 nicotinate-nucleotide 22.2 3.9E+02 0.0084 25.2 7.5 38 28-65 200-237 (288)
161 PLN02591 tryptophan synthase 21.9 2.1E+02 0.0046 26.3 5.6 41 12-52 178-219 (250)
162 TIGR02311 HpaI 2,4-dihydroxyhe 21.6 3.8E+02 0.0082 24.3 7.2 65 2-66 39-107 (249)
163 PRK07028 bifunctional hexulose 21.0 3.7E+02 0.008 26.3 7.4 61 9-70 148-214 (430)
164 COG1224 TIP49 DNA helicase TIP 20.9 89 0.0019 31.0 3.0 62 3-64 299-372 (450)
165 PRK01033 imidazole glycerol ph 20.9 2.4E+02 0.0052 25.6 5.7 39 12-50 185-225 (258)
166 PRK00366 ispG 4-hydroxy-3-meth 20.8 2.7E+02 0.0058 27.2 6.2 73 3-76 60-133 (360)
167 TIGR03239 GarL 2-dehydro-3-deo 20.1 3.5E+02 0.0076 24.7 6.6 63 2-64 39-105 (249)
168 cd04731 HisF The cyclase subun 20.1 2.5E+02 0.0054 24.9 5.6 39 12-50 182-222 (243)
169 cd04723 HisA_HisF Phosphoribos 20.0 2.6E+02 0.0057 24.9 5.7 39 12-50 178-217 (233)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.86 E-value=2.7e-22 Score=187.96 Aligned_cols=56 Identities=46% Similarity=0.678 Sum_probs=53.3
Q ss_pred CCCCCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919 222 HVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277 (277)
Q Consensus 222 ~~~~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlq 277 (277)
.....||+||+||+|||++||+||++||+++||||+||++|+|+||||+|||||||
T Consensus 229 ~~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQ 284 (526)
T PLN03162 229 AAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQ 284 (526)
T ss_pred cCCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHH
Confidence 33457999999999999999999999999999999999999999999999999998
No 2
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.78 E-value=1.6e-19 Score=129.59 Aligned_cols=50 Identities=60% Similarity=0.876 Sum_probs=48.6
Q ss_pred CCccccChHHHHHHHHHHHhcC-CCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919 228 KPRIVWTSELHLKFIEAVSSLG-DIKARPKLILQKMNVPGLTQRQVASHLQ 277 (277)
Q Consensus 228 k~r~~Wt~~lh~~Fv~av~~lg-~~~a~pk~il~~m~v~~lt~~~v~shlq 277 (277)
|+|+.||+|+|.+|++||++|| .+.|+||.|+++|++++||+.||+||||
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHH
Confidence 6899999999999999999999 4999999999999999999999999998
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.25 E-value=1.7e-11 Score=110.55 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=66.7
Q ss_pred CccccCCCCCHHHHHHHHHH---cCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVK---EEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire---~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|++||+++|+++++.++. ..+||||+|+.++......++.+||+|||.|||++.+|..+++.++++...
T Consensus 48 iLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 48 LLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 58999999999999999994 278999999999999999999999999999999999999999999998765
No 4
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.11 E-value=1.6e-10 Score=101.27 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=66.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|.+|...+.+. .+|||++|+.++.....+++..||.|||.||++...|+.+++.++++...
T Consensus 53 llDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~ 125 (202)
T COG4566 53 LLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDAS 125 (202)
T ss_pred EEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHH
Confidence 589999999999999999876 89999999999999999999999999999999999999999999987543
No 5
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.98 E-value=1.4e-09 Score=106.99 Aligned_cols=71 Identities=23% Similarity=0.417 Sum_probs=66.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||+||+..+...+..|+..||.|||.|||+++.|...+.+++..+..
T Consensus 53 l~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 53 LLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 589999999999999999876 89999999999999999999999999999999999999999999987654
No 6
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=98.90 E-value=4.4e-09 Score=93.75 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=66.1
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+.+|++|+..++.. .+-||++|+..+.+.+.++++.||.|||.|||..+.|..++....+++..
T Consensus 51 LLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~ 123 (224)
T COG4565 51 LLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHA 123 (224)
T ss_pred EEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence 589999999999999999976 78899999999999999999999999999999999999999988877664
No 7
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=98.86 E-value=9e-09 Score=79.70 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=58.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQ 63 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq 63 (277)
|+|+.||+++|+++++.|+.. .+|+|+++...+......++.+|+++||.||+++++|..+|+
T Consensus 48 iid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 48 IIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred EEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 579999999999999999875 899999999999999999999999999999999999998874
No 8
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=98.84 E-value=7.5e-09 Score=102.05 Aligned_cols=75 Identities=13% Similarity=0.277 Sum_probs=69.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhhhhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQ 75 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~~~~ 75 (277)
|+|+.||+|||+++++.+++. ++.+|++|+..+.+.+..|+..|+.+||+||++-++|..++.+++.+...+...
T Consensus 53 iTDI~MP~mdGLdLI~~ike~~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~~~~ 129 (475)
T COG4753 53 ITDINMPGMDGLDLIKAIKEQSPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQQKV 129 (475)
T ss_pred EEecCCCCCcHHHHHHHHHHhCCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999985 899999999999999999999999999999999999999999998887655443
No 9
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=2.5e-08 Score=94.78 Aligned_cols=74 Identities=27% Similarity=0.342 Sum_probs=66.0
Q ss_pred CccccCCCCCHHHHHHHHHHc-----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhhhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE-----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKI 74 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~~~ 74 (277)
|+|++||+|+|++++.+|+.. .+|||++|+..+.....+++..||++||.||+++.+|...+...+..+++...
T Consensus 63 llD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~ 141 (360)
T COG3437 63 LLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDF 141 (360)
T ss_pred EeeccCCCccHHHHHHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999873 89999999999999999999999999999999999999999766666644433
No 10
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.70 E-value=5e-08 Score=86.81 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=64.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.|++. +++||++|...+...+..++.+||.+|+.|..++++|..+|+.++...
T Consensus 51 l~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 51 LLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 589999999999999999855 889999999999999999999999999999999999999999998665
No 11
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=98.68 E-value=9.6e-08 Score=84.45 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++..||++||.||++.++|..+++++...+.
T Consensus 55 llD~~mp~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 55 LLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred EEeCCCCCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 579999999999999999864 7889999999999999999999999999999999999999988876544
No 12
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=98.65 E-value=9.8e-08 Score=84.87 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=60.1
Q ss_pred ccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 2 ANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRAL-VEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al-~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
+|+.||+++|+++++.++.. .+|||++|+..+......++ ..||.+||.||.++++|..+|+.+++...
T Consensus 46 ~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 46 SAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred cccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 68899999999999999765 89999999987776566655 79999999999999999999999987643
No 13
>PLN03029 type-a response regulator protein; Provisional
Probab=98.62 E-value=1.6e-07 Score=83.92 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++........+++..|+++||.||+...+|...+.++++.+..
T Consensus 77 llD~~mp~~~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~~~ 151 (222)
T PLN03029 77 ITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSK 151 (222)
T ss_pred EEcCCCCCCCHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999864 78999999999999999999999999999999999999888888766543
No 14
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=98.61 E-value=1.9e-07 Score=80.62 Aligned_cols=69 Identities=26% Similarity=0.389 Sum_probs=63.4
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++.++|...++.++++.
T Consensus 50 ild~~l~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 50 ILDLGLPDGDGIEFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EEeCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999865 899999999999999999999999999999999999999999888764
No 15
>PRK11173 two-component response regulator; Provisional
Probab=98.57 E-value=2.6e-07 Score=80.99 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=63.7
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++..+|...+..++++..
T Consensus 52 ild~~l~~~~g~~~~~~lr~~~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~~ 122 (237)
T PRK11173 52 IMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 (237)
T ss_pred EEcCCCCCCCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence 578999999999999999865 8999999999888888899999999999999999999999999887753
No 16
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=98.56 E-value=3.1e-07 Score=81.81 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=62.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..|+.+||.||++.++|..++..+...+
T Consensus 54 ilD~~~p~~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 54 LLDIYMQQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEecCCCCCCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999865 789999999999999999999999999999999999999998765543
No 17
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.54 E-value=2.8e-07 Score=90.35 Aligned_cols=72 Identities=26% Similarity=0.430 Sum_probs=66.6
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS 72 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~ 72 (277)
|+|+.||++||++++.+++.. .+|||++++.++.....+++..|+.|||.||+...+|...+...+++++-+
T Consensus 181 l~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~ 256 (435)
T COG3706 181 LLDANMPDMDGLELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE 256 (435)
T ss_pred EEecCCCccCHHHHHHHHhcccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH
Confidence 579999999999999999854 899999999999999999999999999999999999999999998887743
No 18
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=98.54 E-value=3.7e-07 Score=78.86 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=63.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|+++...+......++..||++||.||++..+|...+..++++.
T Consensus 49 ild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 49 IVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 478899999999999999864 899999999999999999999999999999999999999999888763
No 19
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=98.54 E-value=4.2e-07 Score=77.67 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=63.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|+|+++...+......++..||++|+.||++.++|...++.++++..
T Consensus 49 lld~~~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 120 (222)
T PRK10643 49 VLDLGLPDEDGLHLLRRWRQKKYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQ 120 (222)
T ss_pred EEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhc
Confidence 478899999999999999865 7999999999999999999999999999999999999999998877643
No 20
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=98.53 E-value=3.9e-07 Score=78.91 Aligned_cols=68 Identities=21% Similarity=0.321 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|+|+++...+......++..||++||.||++.++|...+..++++
T Consensus 49 ild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 49 ILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 478899999999999999865 79999999999999999999999999999999999999999988765
No 21
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=98.53 E-value=4e-07 Score=78.42 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++..+|...+..++++..
T Consensus 51 ild~~l~~~~g~~~~~~lr~~~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 51 LLDINLPGEDGLMLTRELRSRSTVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence 478899999999999999865 8999999999988888999999999999999999999999998887643
No 22
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.52 E-value=1.9e-07 Score=97.81 Aligned_cols=67 Identities=16% Similarity=0.344 Sum_probs=62.2
Q ss_pred CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|++||.|||+++.++||.. .+|||.+|++.......+|++.|.++||.||+..+.|..+++.++.
T Consensus 716 fmD~qMP~mDG~e~~~~irk~~~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 716 FMDLQMPEMDGYEATREIRKKERWHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEEcCCcccchHHHHHHHHHhhcCCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 589999999999999999865 8999999999999999999999999999999999999988887653
No 23
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=98.49 E-value=6e-07 Score=77.55 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|+++...+......++..||++||.||++.++|..++..++++.
T Consensus 49 l~d~~~~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 49 LLDVMMPKKNGIDTLKELRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EEeCCCCCCcHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 578999999999999999865 689999999888888889999999999999999999999999888764
No 24
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=98.48 E-value=8.3e-07 Score=70.25 Aligned_cols=67 Identities=27% Similarity=0.465 Sum_probs=56.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDD-LKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~ee-L~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.++.. .+|+|++++.........++..|+++|+.||+...+ |...+.+.+.
T Consensus 56 i~D~~mp~~~G~~~~~~l~~~~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 56 LLDINMPGMDGIELLRRLRARGPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999875 788888888888876777899999999999977666 6766664443
No 25
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=98.47 E-value=7.5e-07 Score=76.12 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|+++...+......++..||++|+.||++.++|..++..++++.
T Consensus 49 ild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 49 ILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 578899999999999999865 789999999999888899999999999999999999999999887754
No 26
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.46 E-value=3.7e-07 Score=86.79 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=62.9
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.+++. .+|||++|+..+......++..||++||.||+++++|...+....++.
T Consensus 203 i~d~~~p~~~g~~l~~~i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~~ 275 (457)
T PRK09581 203 IVSANFENYDPLRLCSQLRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRK 275 (457)
T ss_pred EecCCCCCchHhHHHHHHHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHHH
Confidence 579999999999999999863 799999999999999999999999999999999999999988766644
No 27
>PRK10693 response regulator of RpoS; Provisional
Probab=98.46 E-value=7.3e-07 Score=83.17 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=61.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++++........+++..||++||.||+ +.++|...+..+++.
T Consensus 22 L~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~ 92 (303)
T PRK10693 22 ICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYP 92 (303)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhh
Confidence 578999999999999999865 79999999999999999999999999999999 589999988877653
No 28
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=98.45 E-value=8.6e-07 Score=77.71 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=62.9
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|+|+++..........++..||++||.||++..+|...+..++++..
T Consensus 50 ild~~l~~~~g~~~~~~ir~~~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~~ 120 (240)
T PRK10701 50 LLDIMLPGKDGMTICRDLRPKWQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 (240)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence 578999999999999999865 7899999988888888899999999999999999999999998887643
No 29
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=98.45 E-value=7.6e-07 Score=77.87 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=63.1
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|...+..++++.
T Consensus 54 ild~~l~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 54 VLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 478899999999999999865 799999999999988899999999999999999999999999888764
No 30
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=98.45 E-value=8.8e-07 Score=76.06 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=62.6
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|+++...+......++..||++|+.||++.++|...++.++++.
T Consensus 49 i~d~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 49 ILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred EEECCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 478899999999999998865 899999999999999999999999999999999999999999887653
No 31
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=98.43 E-value=9.1e-07 Score=75.37 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=63.1
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++.+||++|+.||++.++|...+..++++..
T Consensus 47 l~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 47 ILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred EEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 468899999999999999864 8999999999999999999999999999999999999999988876543
No 32
>PRK13856 two-component response regulator VirG; Provisional
Probab=98.43 E-value=1.1e-06 Score=77.60 Aligned_cols=69 Identities=25% Similarity=0.362 Sum_probs=60.6
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecC-CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSR-RNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~-~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|++++. ........++..||++||.||++..+|...++.++++.
T Consensus 50 i~d~~l~~~~g~~l~~~i~~~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 50 VVDLNLGREDGLEIVRSLATKSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 578899999999999999865 8999999985 45666778999999999999999999999999888764
No 33
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=98.42 E-value=1.2e-06 Score=76.01 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=62.1
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++.+||++||.||++..+|...+..++++
T Consensus 51 ild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 51 LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 578899999999999999753 68999999999889999999999999999999999999999988775
No 34
>CHL00148 orf27 Ycf27; Reviewed
Probab=98.41 E-value=1.4e-06 Score=75.69 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++.++|...+..++++.
T Consensus 55 lld~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 55 ILDVMMPKLDGYGVCQEIRKESDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 478899999999999998865 899999999998888899999999999999999999999999887664
No 35
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=98.41 E-value=1.5e-06 Score=75.07 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=62.2
Q ss_pred CccccCCC--CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISN--IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpd--mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+ .+|+++++.++.. .+|+|++++..+......++.+||++|+.||++..+|..+++.++++.
T Consensus 49 ild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 49 IIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 47889997 5899999999865 799999999999888999999999999999999999999999888764
No 36
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=98.40 E-value=1e-06 Score=75.61 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=62.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+.+|+++++.++.. .+|+|+++...+......++..||++||.||++..+|..++..++++.
T Consensus 52 l~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 52 ILDVGLPDISGFELCRQLLAFHPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 478899999999999999865 899999999888888889999999999999999999999998887664
No 37
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=98.39 E-value=1.3e-06 Score=74.68 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=62.3
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++..||++|+.||++.++|..++..++++.
T Consensus 51 i~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 51 LLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 578899999999999999753 689999999998888999999999999999999999999999887664
No 38
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=98.37 E-value=1.6e-06 Score=75.73 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=61.3
Q ss_pred CccccCCC---CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISN---IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpd---mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+ ++|+++++.++.. .+|||+++...+......++..||++||.||+++++|..+|+.++..
T Consensus 54 llD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 54 ITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 47889998 5999999999764 78999999999999999999999999999999999999999987654
No 39
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=98.36 E-value=1.6e-06 Score=77.92 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=61.4
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++++.........++..|+++||.||++..+|...++.++..
T Consensus 53 llD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 53 VLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred EEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 579999999999999999864 38899999999988889999999999999999999999999887654
No 40
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=98.32 E-value=2.5e-06 Score=72.22 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=62.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.+|+++|+++++.++.. .+|||+++..........++..|+++|+.||++.++|..+++.++.+.
T Consensus 54 ild~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 54 IMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 478899999999999999864 799999999988888899999999999999999999999998887653
No 41
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=98.31 E-value=2.6e-06 Score=72.31 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=61.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.+|+++|+++++.++.. .+|+|+++..........++..||++||.||+++++|..+++.++++
T Consensus 50 i~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 50 IIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 478899999999999999864 68999999988888889999999999999999999999999988765
No 42
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=98.30 E-value=2.7e-06 Score=71.72 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=60.9
Q ss_pred CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.+|+++|+++++.++. .+|||+++..........++..||++|+.||++.++|..+++.++++
T Consensus 52 i~d~~~~~~~g~~~~~~l~~-~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 52 ICDISMPDISGLELLSQLPK-GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EEeCCCCCCCHHHHHHHHcc-CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 47888999999999998863 78999999999999899999999999999999999999999988865
No 43
>PRK09483 response regulator; Provisional
Probab=98.27 E-value=3.4e-06 Score=72.22 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=62.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.+|+++|+++++.++.. .+|+|+++..........++..|+++|+.||++.++|..+++.+++..
T Consensus 52 i~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 52 LMDMNMPGIGGLEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred EEeCCCCCCCHHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 578899999999999998764 799999999988888899999999999999999999999999887654
No 44
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=98.26 E-value=1.3e-06 Score=74.57 Aligned_cols=64 Identities=19% Similarity=0.362 Sum_probs=59.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQH 64 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~ 64 (277)
++|+.|.+.+|+.+++.|++. +..+|+++++.+......++..||++||.||.+.+++..++..
T Consensus 58 vvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 58 VVDLKLGDGSGLAVIEALRERRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred EEEeeecCCCchHHHHHHHhcCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 479999999999999999876 9999999999999999999999999999999999998877653
No 45
>PRK14084 two-component response regulator; Provisional
Probab=98.25 E-value=3.8e-06 Score=74.43 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=56.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. ..++|++++.. ....+++..||.+||.||++.++|..++..+.+..
T Consensus 51 ~lDi~m~~~~G~~~~~~i~~~~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 51 FLDINLMDESGIELAAKIQKMKEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 579999999999999999875 56677777654 35678999999999999999999999999887553
No 46
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=98.24 E-value=3.6e-06 Score=89.66 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=63.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+|+|+++++.+++. .+|||++++.........++.+|+++||.||++.++|...+..+.++.+
T Consensus 850 l~D~~mP~mdG~el~~~ir~~~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~r 921 (924)
T PRK10841 850 LTDVNMPNMDGYRLTQRLRQLGLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERVR 921 (924)
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 579999999999999999875 7999999999999999999999999999999999999999988766543
No 47
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.23 E-value=4.2e-06 Score=81.25 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=61.4
Q ss_pred CccccCCC-----CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISN-----IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpd-----mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+ ++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..++..++..
T Consensus 45 llD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 45 TLDLGLPPDADGASEGLAALQQILAIAPDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 57889995 8999999998765 79999999999999999999999999999999999999999887654
No 48
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.22 E-value=3.2e-06 Score=88.26 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=62.2
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+.........++..|+++||.||++..+|...+..++..
T Consensus 716 l~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 716 LMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 589999999999999999863 79999999999999999999999999999999999999998877654
No 49
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.20 E-value=4e-06 Score=87.89 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++.........++..|+++||.||++.++|...+.++++..
T Consensus 731 l~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 731 LVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999865 899999999999888999999999999999999999999999988654
No 50
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=98.19 E-value=8.9e-06 Score=69.37 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=62.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.+|+++|++++..++.. .+|+|+++...+......++..|+++|+.||+...+|...+..++++..
T Consensus 49 ild~~~~~~~~~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~ 120 (221)
T PRK15479 49 VLDINMPGMDGLEVLQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 (221)
T ss_pred EEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhc
Confidence 468889999999999998764 7999999998888888899999999999999999999999988876543
No 51
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=98.14 E-value=7.3e-06 Score=85.69 Aligned_cols=68 Identities=15% Similarity=0.304 Sum_probs=61.7
Q ss_pred CccccCCCCCHHHHHHHHHHc------CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE------EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~------~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+.........++..|+++||.||++.++|..++..+++.
T Consensus 739 l~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 739 LMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred EEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 579999999999999999852 68999999999999999999999999999999999999999877653
No 52
>PRK15115 response regulator GlrR; Provisional
Probab=98.14 E-value=6e-06 Score=80.14 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=63.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||.+||.||+...+|...+..+++..
T Consensus 54 ilD~~lp~~~g~~ll~~l~~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 54 ISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 579999999999999998765 799999999998888999999999999999999999999999887653
No 53
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=98.13 E-value=7.8e-06 Score=73.12 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=55.4
Q ss_pred CccccCCCCCHHHHH-HHHHHc--CCcEEEEecCCCHHHHHHHHH--cCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFV-RVLVKE--EIPIILMSSRRNEIFSWRALV--EGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL-~~Ire~--~iPVIllSs~~~~~~v~~al~--~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|++++ +.++.. .++||++|...+. ...++. .||.+||.|+.++++|..+|+.+++..
T Consensus 57 llDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~ 128 (216)
T PRK10100 57 LLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128 (216)
T ss_pred EEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 589999999999997 456654 7899999998763 344555 599999999999999999999988654
No 54
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=98.13 E-value=1.3e-05 Score=69.64 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=61.8
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|++++..++.. .+|+|+++..........++..||++|+.||++..+|...+..++++.
T Consensus 59 l~d~~~~~~~g~~~~~~l~~~~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 59 LLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 478899999999999998865 899999999888888889999999999999999999999998887754
No 55
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.11 E-value=1.1e-05 Score=78.85 Aligned_cols=69 Identities=17% Similarity=0.370 Sum_probs=63.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..|+.+||.||++.++|...+..++...
T Consensus 52 llD~~lp~~dgl~~l~~ir~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 52 LSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EECCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 578999999999999999865 789999999999999999999999999999999999999999887653
No 56
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.11 E-value=1.1e-05 Score=78.70 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=62.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|++++..++.. .+|||++++.........++..|+.+||.||++.+.|...+..++...
T Consensus 47 llD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 47 ITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred EEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999865 789999999998888999999999999999999999999998877643
No 57
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.10 E-value=8e-06 Score=79.35 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=61.8
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..|+.+||.||++.++|...+..++..
T Consensus 53 llD~~~p~~~g~~ll~~i~~~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 53 LMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 578999999999999998764 79999999999999999999999999999999999999999877653
No 58
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.10 E-value=9.5e-06 Score=85.40 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=62.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--C---CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--E---IPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~---iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. . +|||++++.........++..|+++||.||++..+|...+..++..
T Consensus 751 l~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 751 LLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 589999999999999999864 3 8999999999999999999999999999999999999999888754
No 59
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.09 E-value=6.8e-06 Score=79.39 Aligned_cols=69 Identities=22% Similarity=0.417 Sum_probs=62.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|++++..++.. .+|||++++.........++..|+.+||.||++.+.|...+..++...
T Consensus 54 ilD~~m~~~~G~~~~~~ir~~~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 54 LCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999865 789999999988889999999999999999999999999999887654
No 60
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=98.09 E-value=1.1e-05 Score=70.75 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=54.8
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. ..++|++++.. .....++..||.+||.||++.++|..++.++.+..
T Consensus 52 ~lDi~~~~~~G~~~~~~l~~~~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (238)
T PRK11697 52 FLDIQMPRISGLELVGMLDPEHMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQER 119 (238)
T ss_pred EEeCCCCCCCHHHHHHHhcccCCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 579999999999999988644 34566676654 45678899999999999999999999998886543
No 61
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=98.09 E-value=3.2e-06 Score=78.94 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=57.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
++|+.||+|+|++|+++++.. .+|+|++|+.... ...++..-+.+||+||++++.|..+|.++.++.
T Consensus 49 fldI~mp~~ngiefaeQvr~i~~~v~iifIssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 49 FLDIVMPYMNGIEFAEQVRDIESAVPIIFISSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred EEEeecCCccHHHHHHHHHHhhccCcEEEEecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 579999999999999999876 8999999997654 456667778999999999999999998877443
No 62
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=98.08 E-value=3.1e-05 Score=58.47 Aligned_cols=68 Identities=15% Similarity=0.334 Sum_probs=59.3
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
++|..+++++|+++++.++.. .+|+++++..........++..|+.+|+.||++..+|...++.++++
T Consensus 55 l~d~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 55 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEcCCCCCCCHHHHHHHHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 357778899999999998753 58999999888888888999999999999999999999999887765
No 63
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.06 E-value=2e-05 Score=74.95 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+.+|+++++.++.. .+|||+++...+......++..||++||.||++.++|..++..+++.+.
T Consensus 51 i~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 124 (457)
T PRK09581 51 LLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKM 124 (457)
T ss_pred EEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 478899999999999999863 6899999999998899999999999999999999999999988876543
No 64
>PRK10403 transcriptional regulator NarP; Provisional
Probab=98.05 E-value=1.7e-05 Score=66.87 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=60.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.+|+++|++++..++.. .+|+|+++..........++..|+++|+.||++..+|...++.++..
T Consensus 57 i~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 57 LLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred EEecCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 468889999999999998765 68999999888888888999999999999999999999999887654
No 65
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=98.05 E-value=1.9e-05 Score=65.87 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=60.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.+++++|++++..++.. .+|+|+++..........++..|+.+|+.||++..+|...+..+++.
T Consensus 54 l~d~~~~~~~~~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 54 ILDLGLPGMNGLDVIPQLHQRWPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred EEeCCCCCCCHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 468889999999999998764 78999999998888889999999999999999999999999887654
No 66
>PRK10651 transcriptional regulator NarL; Provisional
Probab=98.01 E-value=2.6e-05 Score=65.95 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=61.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.+|+++|+++++.++.. .+|+|+++..........++..|+.+|+.||++..+|...+..+++..
T Consensus 57 l~d~~l~~~~~~~~~~~l~~~~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 57 LLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 468889999999999998764 789999999888888889999999999999999999999999887653
No 67
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.98 E-value=2.1e-05 Score=85.07 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=61.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.++.. .+|||++++.........++..|+++||.||++.++|...+..++.
T Consensus 1007 l~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1007 ITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 579999999999999999865 7999999999999999999999999999999999999999887654
No 68
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=97.97 E-value=2.1e-05 Score=65.40 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=61.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.+|+++|++++..++.. .+|+|+++...+......++..|+.+|+.||+....|...+..++...
T Consensus 52 i~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 52 VTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 468889999999999999864 789999999888888899999999999999999999999888877653
No 69
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=97.90 E-value=3.8e-05 Score=72.30 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=53.9
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCC---------CHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRN--EIFSWRALVEGACFFLEKPI---------SFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~--~~~v~~al~~GA~dyL~KPi---------s~eeL~~~Lq~vlr 67 (277)
|+|+.||+|+|+++++.++.. .+|||+++.... .....+++..|+.+||.||+ ..++|...++.+.+
T Consensus 51 llD~~mp~~~G~e~l~~l~~~~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 51 LMDLEMPRMDGVEATRRIMAERPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EEcCCCCCCCHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 579999999999999999755 799999987643 45667899999999999999 45566666665543
No 70
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.86 E-value=4.5e-05 Score=79.01 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=57.6
Q ss_pred CccccCCCCCHHHHHHHHHHc----C-CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----E-IPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~-iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. . +|||++++.... ....++..|+++||.||++..+|...+.+++...
T Consensus 574 l~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 574 LLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 579999999999999999865 3 588888886654 4578899999999999999999999998887543
No 71
>PRK13435 response regulator; Provisional
Probab=97.83 E-value=5.9e-05 Score=61.28 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=54.6
Q ss_pred CccccCC-CCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDIS-NIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mp-dmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.++ +.+|+++++.++.. .+|+|+++...+. ..++..|+++||.||++..+|...|++++.++.
T Consensus 55 ivd~~~~~~~~~~~~~~~l~~~~~~pii~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 55 LVDVHLADGPTGVEVARRLSADGGVEVVFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEeeecCCCCcHHHHHHHHHhCCCCCEEEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 4677787 48999999988654 8999999876432 457789999999999999999999988876554
No 72
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=97.70 E-value=0.00011 Score=52.53 Aligned_cols=65 Identities=26% Similarity=0.416 Sum_probs=55.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
|+|..+++.+++++++.++.. .+|+++++..........++..|+.+|+.+|+....|...+..+
T Consensus 46 i~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 46 LLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred EEecCCCCCchHHHHHHHHHhCCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 356778889999999998764 78999998877777788889999999999999999998887654
No 73
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.68 E-value=0.00011 Score=74.71 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=57.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHH--HHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFD--DLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~e--eL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..|+.+|+.||.... .+..+++.++..
T Consensus 56 l~d~~lp~~~g~~~l~~l~~~~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 56 VADHEPDGFDGLALLEAVRQTTAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEeccCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 578999999999999999865 79999999999999999999999999999997643 566666655544
No 74
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=97.62 E-value=0.00019 Score=67.92 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=45.7
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCC--CHHHHHHHHHcCCcEEEeCCCC
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRR--NEIFSWRALVEGACFFLEKPIS 54 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~--~~~~v~~al~~GA~dyL~KPis 54 (277)
|+|+.||+++|+++++.++.. .+|+|+++... .......++..|+++||.||+.
T Consensus 54 llD~~mp~~dgle~l~~i~~~~~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 54 TLDVEMPVMDGLDALEKIMRLRPTPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEeCCCCCCChHHHHHHHHHhCCCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 478999999999999998765 69999998753 3456678999999999999994
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=97.61 E-value=0.00025 Score=62.68 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=57.6
Q ss_pred CccccCCCCCHHHHHHHHHH-cCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVK-EEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire-~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.+|..|-.+-+....+ ...|+|+++.+.++..+..++.+|+.+||+||+++..|+.++.-++.+...
T Consensus 55 ildie~p~rd~~e~~~~~~~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~ 126 (194)
T COG3707 55 ILDIEMPRRDIIEALLLASENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE 126 (194)
T ss_pred EEecCCCCccHHHHHHHhhcCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHH
Confidence 57888888883333333333 378999999999999999999999999999999999999999877766553
No 76
>PRK09191 two-component response regulator; Provisional
Probab=97.56 E-value=0.00028 Score=62.74 Aligned_cols=69 Identities=14% Similarity=0.420 Sum_probs=55.3
Q ss_pred CccccCCC-CCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISN-IDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpd-mdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+ ++|+++++.++.. .+|||+++....... .+...++.+|+.||++.++|...++.++....+
T Consensus 187 i~d~~~~~~~~g~e~l~~l~~~~~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~~ 257 (261)
T PRK09191 187 LADIQLADGSSGIDAVNDILKTFDVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFFQET 257 (261)
T ss_pred EEecCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhccch
Confidence 57888995 8999999998754 899999998765543 344567889999999999999999887766443
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.18 E-value=0.00087 Score=70.51 Aligned_cols=64 Identities=25% Similarity=0.242 Sum_probs=57.7
Q ss_pred cCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 5 DISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 5 ~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
.||+++|++++..++.. .+|||+++..........++..| ++||.||++..+|..++.++++..
T Consensus 750 ~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 750 DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 58899999999999865 89999999998888888999999 999999999999999999887653
No 78
>PRK13557 histidine kinase; Provisional
Probab=97.15 E-value=0.0009 Score=65.00 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=59.1
Q ss_pred CccccCCC-CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISN-IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpd-mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|..+++ ++|+++++.++.. .+|+|+++..........++..|+.+|+.||++.++|...+..++..
T Consensus 465 i~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 465 FTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 46788996 9999999999864 79999999988888788888999999999999999999988876653
No 79
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.10 E-value=0.0013 Score=63.13 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=46.4
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCCC
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRN--EIFSWRALVEGACFFLEKPIS 54 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~--~~~v~~al~~GA~dyL~KPis 54 (277)
.+|+.||.|||+++++.+... .+||||+|+-.. .....+++..||.||+.||..
T Consensus 52 ~ld~emp~mdgl~~l~~im~~~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 52 TLDVEMPVMDGLEALRKIMRLRPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEecccccccHHHHHHHHhcCCCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 379999999999999997655 999999987544 456779999999999999974
No 80
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=97.04 E-value=0.0014 Score=58.03 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=53.3
Q ss_pred Ccccc--CCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcE-EEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVD--ISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACF-FLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~--mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~d-yL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+. ++..+|+++++.+++. .++||++|...+..... ++..|+.. |+.|+.++++|..+++.+..+.
T Consensus 52 LlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 52 FINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred EEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 46754 8888999999999765 78999999887765543 44445544 8899999999999999987654
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=96.65 E-value=0.0028 Score=57.78 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=54.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
++|+.||+++|+++...++.. ..+|+++++.. .....++...|.+||.||+..+.|...+....+.
T Consensus 52 fldI~~~~~~G~ela~~i~~~~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 52 FLDIAMPDINGIELAARIRKGDPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEeeccCccchHHHHHHhcccCCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 479999999999999999875 56666677654 4456777889999999999999999999877665
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.0017 Score=64.11 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=61.5
Q ss_pred CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
++|+.||+|+|+++++.++....++++++.........+.+.+|++.||.||+....+........+.+.
T Consensus 37 lld~~m~~~~~~~~~~~lk~~~~~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~k~ 106 (435)
T COG3706 37 LLDVMMPGMDGFELCRRLKAEPATVVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRLKC 106 (435)
T ss_pred EeecccCCcCchhHHHHHhcCCcceEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccchh
Confidence 5799999999999999999886668888888888888899999999999999999999888887766554
No 83
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=96.26 E-value=0.0043 Score=42.30 Aligned_cols=45 Identities=38% Similarity=0.422 Sum_probs=38.1
Q ss_pred ccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919 230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277 (277)
Q Consensus 230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlq 277 (277)
|..||++=+.+|++||.+.|.. .-+.|...|+ .|-|..++++|.|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQ 45 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHH
Confidence 5689999999999999999944 6889999998 8999999999853
No 84
>smart00426 TEA TEA domain.
Probab=94.11 E-value=0.069 Score=39.67 Aligned_cols=46 Identities=30% Similarity=0.504 Sum_probs=30.6
Q ss_pred ccChHHHHHHHHHHHhcCCCCCCcHHHHhh--c------------CCCC--CCHHHHhhccC
Q 045919 232 VWTSELHLKFIEAVSSLGDIKARPKLILQK--M------------NVPG--LTQRQVASHLQ 277 (277)
Q Consensus 232 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~--m------------~v~~--lt~~~v~shlq 277 (277)
+|.++|-.-|++|+...-.....+-+++.. | ...| =|+.+|.||+|
T Consensus 5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence 799999999999999886222222122221 0 1244 47789999998
No 85
>PRK15029 arginine decarboxylase; Provisional
Probab=92.14 E-value=0.34 Score=51.17 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=46.6
Q ss_pred CccccCCCCCHH----HHHHHHHHc--CCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCCCH-HHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSL----SFVRVLVKE--EIPIILMSSRRN--EIFSWRALVEGACFFLEKPISF-DDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~----eLL~~Ire~--~iPVIllSs~~~--~~~v~~al~~GA~dyL~KPis~-eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+ ++++.|+.. .+|||++|+..+ ...... .-.-+.+|+.+--.. +.+...+....++..
T Consensus 58 LLD~~LPd~dG~~~~~ell~~IR~~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 135 (755)
T PRK15029 58 MFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_pred EEECCCCCCccchhHHHHHHHHHhhCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHHHHHHH
Confidence 589999999997 899999864 899999998875 222222 223466777775444 444455666555554
No 86
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=90.57 E-value=0.79 Score=48.11 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=51.1
Q ss_pred CccccCCCCCHHHHHHH-HHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRV-LVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~-Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
|+|+.||++.+...+.. +... ..++|+++..........+...|+++|+.||+...+|...+....
T Consensus 581 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 581 LLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred EecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 45778888776665544 3322 567788888888888889999999999999999999988887544
No 87
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.79 E-value=0.93 Score=42.43 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=36.0
Q ss_pred CCcEEEEe-cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 22 EIPIILMS-SRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 22 ~iPVIllS-s~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
...++++. ...+......+++.||.+||.+|++..+|..++..+
T Consensus 41 ~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 41 RRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 34455444 456788899999999999999999999999988765
No 88
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=77.85 E-value=12 Score=33.81 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRN------EIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~------~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
.++++++.++.. .+|+++|+-... ...+..+..+|+++++.-.+.++++...+..+.
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 356667777655 799888876443 556778889999999997777776655555443
No 89
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=74.60 E-value=12 Score=35.28 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHc-CCcEE--EEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhhhhhhhh
Q 045919 10 DSLSFVRVLVKE-EIPII--LMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRRSKIQLE 77 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVI--llSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~~~~~~~ 77 (277)
.++++++.+.+. .+||| ...+-..+..+..+++.||+++++ +.-++......+..++..+.......+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~~~~~~~~e 259 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHYDNPEKLAE 259 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 578999998765 89998 555556889999999999999864 555788888888888777665544433
No 90
>PLN02591 tryptophan synthase
Probab=71.75 E-value=17 Score=33.52 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=42.2
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRN------EIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~------~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
.+++++.++.. .+|+|+|+-... .....+|.++|++++|.-.+.+++....+..+.
T Consensus 66 ~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 66 VISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 46777777754 789888876443 345778889999999999999888877666553
No 91
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=70.74 E-value=18 Score=34.16 Aligned_cols=68 Identities=9% Similarity=-0.001 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHc-CCcEE--EEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhhhhhhhh
Q 045919 10 DSLSFVRVLVKE-EIPII--LMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRRSKIQLE 77 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVI--llSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~~~~~~~ 77 (277)
.++++++++.+. .+||| ....-..+..+..+++.||+.+++ +.-++.+....+..++..+.......+
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~~~~~~~ 265 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYDDPEVLAE 265 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 478889988765 89998 555556889999999999999864 455788888888888877776544433
No 92
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=70.47 E-value=19 Score=33.91 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHc-CCcEE--EEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhhhhhhhh
Q 045919 10 DSLSFVRVLVKE-EIPII--LMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRRSKIQLE 77 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVI--llSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~~~~~~~ 77 (277)
.++++++.+.+. .+||| ...+-..++.+..++..||+++++ +.-++......+..++.+........+
T Consensus 181 ~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~~~~~~~e 256 (283)
T cd04727 181 APYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDPEILAE 256 (283)
T ss_pred CCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 578899998765 89998 556666889999999999999865 444677777777777776655444433
No 93
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=69.59 E-value=21 Score=32.76 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSRRN------EIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~~~------~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
.+++++.++.. .+|+++|+-... ...+..+..+|+++++......++....+..+
T Consensus 74 ~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 46667777743 789887776554 56688889999999999988888776655554
No 94
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.26 E-value=20 Score=33.12 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHHHc--CCcEEEEecC------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSR------RNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~------~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
.+++++.++.. .+|+|+|+-. +-......+..+|++++|.-.+.+++....+..+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 46777777733 8899888844 3345678889999999999888888777666555
No 95
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=66.77 E-value=3.5 Score=40.93 Aligned_cols=50 Identities=26% Similarity=0.326 Sum_probs=26.9
Q ss_pred CCCccccChHHHHHHHHHHHhcC-CCCCCc--------------HHHHhhcCCCCCCHHHHhhccC
Q 045919 227 RKPRIVWTSELHLKFIEAVSSLG-DIKARP--------------KLILQKMNVPGLTQRQVASHLQ 277 (277)
Q Consensus 227 ~k~r~~Wt~~lh~~Fv~av~~lg-~~~a~p--------------k~il~~m~v~~lt~~~v~shlq 277 (277)
++..-+|++++..-|++|+...- ...+.- .+|...-| .-=|+.+|+||+|
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiq 110 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQ 110 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHH
Confidence 45567999999999999998875 222221 11211112 3357889999998
No 96
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=65.57 E-value=24 Score=32.69 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHHHHHHc-CCcEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRR------NEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~------~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
.+++++.++.. .+|+|+|+-.. -...+.+|..+|++++|..-+.+++....+..+
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 46777777754 88988887553 245688899999999999988888866655554
No 97
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=62.85 E-value=48 Score=30.98 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=49.4
Q ss_pred HHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhh
Q 045919 13 SFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 13 eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~ 71 (277)
..++.|++. ++|||+-++-...+.+..+++.|+++.+. |.-++.++..++..+++.-+.
T Consensus 179 ~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR~ 243 (267)
T CHL00162 179 LNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGRL 243 (267)
T ss_pred HHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHHH
Confidence 566666665 89999999999999999999999999864 677889999999888876653
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=61.74 E-value=62 Score=29.97 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~ 70 (277)
.++++.+++. .+|||+=.+-..++.+..+++.||++++. +.-++..+..++..++..-+
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 6788887765 89999988889999999999999999975 55667777777777776554
No 99
>PRK12704 phosphodiesterase; Provisional
Probab=60.07 E-value=12 Score=37.97 Aligned_cols=48 Identities=8% Similarity=-0.114 Sum_probs=40.2
Q ss_pred CCcEEEEecCCCHH--HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 22 EIPIILMSSRRNEI--FSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 22 ~iPVIllSs~~~~~--~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
...+|++|+.+... ....++..++.|+..||++++++...++.-+...
T Consensus 249 tp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 249 TPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred CCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 34588889877765 7889999999999999999999999998777654
No 100
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=58.69 E-value=48 Score=30.63 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=44.0
Q ss_pred HHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 045919 13 SFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 13 eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~ 70 (277)
..++.|++. ++|||+=.+-+.++....+++.|+++.|+ +--++-.+..+.++++..-+
T Consensus 165 ~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp HHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 556666544 99999999999999999999999999987 46777888888888776654
No 101
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=56.99 E-value=47 Score=29.08 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe--CCCCHHHHHHHHHHH
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE--KPISFDDLKYVWQHS 65 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~--KPis~eeL~~~Lq~v 65 (277)
..++.++.+++. .+||++...-.+...+..++.+||+.+++ .-+..+.+...+...
T Consensus 59 g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 59 GSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 356777777766 89999865445556788899999999973 234445555555544
No 102
>PRK00208 thiG thiazole synthase; Reviewed
Probab=56.64 E-value=73 Score=29.53 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~ 70 (277)
.++++.+++. .+|||+=.+-..++.+..+++.||++++. +.-++..+..++..++..-+
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 5778887765 89999999999999999999999999975 55667777777777776554
No 103
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.98 E-value=1.1e+02 Score=25.22 Aligned_cols=55 Identities=5% Similarity=-0.148 Sum_probs=36.3
Q ss_pred HHHHHHHcC--CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 14 FVRVLVKEE--IPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 14 LL~~Ire~~--iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
+++.+++.. ...|++.+...........++|++.|+..--++.++...+...+..
T Consensus 73 ~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 73 LRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred HHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 334455442 2334444434445567788899999999988898888888775543
No 104
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=52.40 E-value=40 Score=26.84 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIY 68 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~ 68 (277)
..++++.++.. .+||++++.......+-..+-..+++|+.... +++.+...|..++++
T Consensus 54 ~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 54 AQELLDKIRERNFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp HHHHHHHHHHHSTT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 45778887765 99999999866555444555667888888764 455666666666554
No 105
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=51.34 E-value=81 Score=27.03 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHc-C-CcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 10 DSLSFVRVLVKE-E-IPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 10 dG~eLL~~Ire~-~-iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
.|++.++.+++. . +||++..+- +.+.+..++..||+++..
T Consensus 146 ~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 146 QGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 357888888765 4 898877665 577888999999999875
No 106
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.56 E-value=1e+02 Score=24.62 Aligned_cols=51 Identities=6% Similarity=-0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 045919 13 SFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQ 63 (277)
Q Consensus 13 eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq 63 (277)
++++.+++. .-+.|++.+........++.++|++.|+..-.++++....++
T Consensus 69 ~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 69 EVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 344555554 234455555555666777889999999999888888776553
No 107
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.41 E-value=83 Score=28.36 Aligned_cols=53 Identities=28% Similarity=0.207 Sum_probs=33.3
Q ss_pred HHHHHHHHc-CCcEEEEe-----cCCCHHHHHHHHHcCCcEEEeC--CCC-HHHHHHHHHHH
Q 045919 13 SFVRVLVKE-EIPIILMS-----SRRNEIFSWRALVEGACFFLEK--PIS-FDDLKYVWQHS 65 (277)
Q Consensus 13 eLL~~Ire~-~iPVIllS-----s~~~~~~v~~al~~GA~dyL~K--Pis-~eeL~~~Lq~v 65 (277)
++++.++.. .+|+++|+ ..+....+..+..+|++.++.. |+. .+++...+..+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 466666654 88987664 2233345777889999999986 343 35555444443
No 108
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=48.30 E-value=61 Score=29.90 Aligned_cols=56 Identities=18% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEE------EeCCCCHHHHHHHHHHHHHH
Q 045919 13 SFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFF------LEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 13 eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dy------L~KPis~eeL~~~Lq~vlr~ 68 (277)
.++.++++. .+|||..-.-.+.+.+.+++..||+.+ +..|.-+..+..-+...+..
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 556666655 899999888889999999999998864 45664444444444444433
No 109
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=44.34 E-value=57 Score=29.07 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 9 IDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 9 mdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
...|+|++++.+..+|||.=-....++.+.+++.+||+..++=
T Consensus 131 ~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 131 GPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp SHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred CCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 3468999998877999888777888999999999999998763
No 110
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.84 E-value=70 Score=29.13 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHc--CCcEEEEe------cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 12 LSFVRVLVKE--EIPIILMS------SRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 12 ~eLL~~Ire~--~iPVIllS------s~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
++++++.+.. .+|||+|. ..+....+..+-.+||.+||.-.+.+++-...-..+
T Consensus 83 ~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~ 144 (268)
T KOG4175|consen 83 IEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEA 144 (268)
T ss_pred HHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHH
No 111
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=42.78 E-value=1.1e+02 Score=26.96 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=34.2
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
.+.+++.++.. .+||+...+-.+...+..++..||++++.=
T Consensus 161 ~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 161 DFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 46788888765 899998888888899999999999998763
No 112
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=42.54 E-value=65 Score=19.86 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=30.6
Q ss_pred ccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhc
Q 045919 232 VWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 232 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~sh 275 (277)
.||++=+..|+.++.+.|. ..-..|...| ++=|..+|+.|
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~--~~w~~Ia~~~--~~rs~~~~~~~ 40 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK--NNWEKIAKEL--PGRTPKQCRER 40 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc--CCHHHHHhHc--CCCCHHHHHHH
Confidence 4999999999999999994 3356777776 34677777665
No 113
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=42.45 E-value=47 Score=25.62 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=34.0
Q ss_pred CCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHH
Q 045919 22 EIPIILMSSRRN--EIFSWRALVEGACFFLEKPI--SFDDLKYVWQHSYIY 68 (277)
Q Consensus 22 ~iPVIllSs~~~--~~~v~~al~~GA~dyL~KPi--s~eeL~~~Lq~vlr~ 68 (277)
.+-+++++.... ...+..++..|..-|+-||+ +.+++...++.+-+.
T Consensus 62 ~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 62 DVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp TESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 455555555443 46788999999999999998 778887777665443
No 114
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.90 E-value=1.1e+02 Score=26.99 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=38.9
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe------CCCCHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE------KPISFDDLKYV 61 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~------KPis~eeL~~~ 61 (277)
.+++++.+.+. .+||++..+-.+.+.+..++..||++++. .|+.+.++...
T Consensus 181 ~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 181 NTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 46778887665 89999888888888888889999998765 46666655544
No 115
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=41.70 E-value=1.6e+02 Score=28.45 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=48.4
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhh
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~ 71 (277)
-+.++.+.+. .+|||+=++-...+.+..+++.|+++.|. |--+|-.+..+++.++..-+.
T Consensus 238 p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr~ 303 (326)
T PRK11840 238 PYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGRL 303 (326)
T ss_pred HHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHHH
Confidence 3556665555 89999999999999999999999999865 667788888888888766553
No 116
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.86 E-value=1.3e+02 Score=28.19 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=37.1
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSRRN------EIFSWRALVEGACFFLEKPISFDDLKYV 61 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~~~------~~~v~~al~~GA~dyL~KPis~eeL~~~ 61 (277)
.+++++.++.. .+|+++|+-... .....++.+.|++++|+--+.+++-...
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~ 139 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDEL 139 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHH
Confidence 46677777754 899999986543 3446688899999999987777655433
No 117
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=38.94 E-value=83 Score=19.65 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=29.5
Q ss_pred cccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhc
Q 045919 231 IVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 231 ~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~sh 275 (277)
-.||++=...|+.++.++|. ..=..|-..|+ +=|...|+.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~--~~w~~Ia~~~~--~rt~~~~~~~ 42 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK--NNWEKIAKELP--GRTAEQCRER 42 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc--CCHHHHHHHcC--CCCHHHHHHH
Confidence 46999999999999999993 22455666654 6666666544
No 118
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=37.48 E-value=69 Score=25.36 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 12 LSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 12 ~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
..+++.+... .+|||++......... ..+.+-|.-|++..+|..+++++
T Consensus 57 ~~~l~~l~~~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 57 AELLKELLKWAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 4556665443 8999999876655111 12666788999999999998865
No 119
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.97 E-value=1.3e+02 Score=27.70 Aligned_cols=38 Identities=29% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFL 49 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL 49 (277)
+.++..+++. ++|||....-.+...+.+++.+||+.+.
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ 258 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQ 258 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 4677777665 8999998888889999999999998653
No 120
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=35.58 E-value=97 Score=27.18 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
..+++++.+++. .+||+...+-.+...+..++..||++++.-
T Consensus 164 ~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 164 PDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 346788888765 899999888888899999999999998874
No 121
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=35.30 E-value=1.6e+02 Score=25.20 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHc-CCcE-E-EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 045919 10 DSLSFVRVLVKE-EIPI-I-LMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVW 62 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPV-I-llSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~L 62 (277)
-++++++.++.. ..|+ + +|+. +....+..+...|++.++......++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~-~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVE-NPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeC-CHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 467888888865 6675 3 4443 4456677888999999888765544444333
No 122
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=34.30 E-value=2.1e+02 Score=25.41 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=35.9
Q ss_pred ccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHH
Q 045919 2 ANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLK 59 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~ 59 (277)
+.+.+..-+++++++.+++. .--+|-...--+.+.+..++.+||...+..-++++-+.
T Consensus 37 iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~ 95 (196)
T PF01081_consen 37 IEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIE 95 (196)
T ss_dssp EEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHH
T ss_pred EEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 34555566788898888765 32344455567788899999999997666555554433
No 123
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.56 E-value=1.1e+02 Score=26.92 Aligned_cols=39 Identities=13% Similarity=0.006 Sum_probs=32.6
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+++++.+++. .+||+...+-.+.+.+..++..||++++.
T Consensus 179 ~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 179 FELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 6778887765 89999888888888888899999999876
No 124
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.10 E-value=1.8e+02 Score=26.10 Aligned_cols=57 Identities=16% Similarity=0.006 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYI 67 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr 67 (277)
-|+++++.+.+. .+||+.+.+- ..+.+..++.+||+++-. +.-++..-...+..+++
T Consensus 151 ~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 367788777655 8999998764 567778889999998743 44445444444444443
No 125
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=32.76 E-value=87 Score=29.00 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHHH-Hc-CCcEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 045919 11 SLSFVRVLV-KE-EIPIILMSSRRN------EIFSWRALVEGACFFLEKPISFDDLKYV 61 (277)
Q Consensus 11 G~eLL~~Ir-e~-~iPVIllSs~~~------~~~v~~al~~GA~dyL~KPis~eeL~~~ 61 (277)
.+++++.++ .. .+|+|+|+-... .....+|-.+|++++|.--+.+++-...
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~ 132 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEEL 132 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 366777777 44 899999986432 3456677789999999987777655433
No 126
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=32.06 E-value=1.3e+02 Score=27.66 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=31.1
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEE
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFF 48 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dy 48 (277)
+.++.++++. ++|||....-.+...+.+++.+||+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 5677777665 899999999889999999999998764
No 127
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=32.05 E-value=2.8e+02 Score=25.92 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=47.9
Q ss_pred HHHHHHHHHHc-CCcEEEEecCC--CHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhhhhhhh
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRR--NEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRRSKIQL 76 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~--~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~~~~~~ 76 (277)
-++++..+... .+||+-+++.+ .+....-.+++||++.++ |.-+|+....+|-.+...........
T Consensus 194 p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~yddp~~la 267 (296)
T COG0214 194 PYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATTHYDDPEVLA 267 (296)
T ss_pred hHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHHHccCCHHHHH
Confidence 35777777666 89999987653 344445557899999864 88899999988888877776654433
No 128
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.01 E-value=1.3e+02 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
..+++++.+++. .+||++.-+-...+.+.+++..||++++.-
T Consensus 143 ~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 143 GTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 456788887765 899998877777788889999999998774
No 129
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=31.47 E-value=3.1e+02 Score=25.05 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 7 SNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 7 pdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
|...-|+|++.+....++||.=-....+....+++..||+..++=
T Consensus 165 ~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVG 209 (229)
T COG3010 165 PTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVG 209 (229)
T ss_pred CCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEEC
Confidence 445668999999888999999888999999999999999998764
No 130
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=31.21 E-value=1.2e+02 Score=26.55 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=32.2
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+++++.+++. .+||++-.+-.+.+.+..++..||++++.
T Consensus 178 ~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 178 FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 6777777665 88998888888888888888899999876
No 131
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=30.97 E-value=2.4e+02 Score=26.23 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=44.5
Q ss_pred HHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHHHHh
Q 045919 13 SFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK-----PISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 13 eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K-----Pis~eeL~~~Lq~vlr~~~ 70 (277)
..++.|.+. ++|||+=++-+.++....+++.|++..|.- --++-.+..+..+++..-+
T Consensus 172 ~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 172 YNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEAGR 235 (262)
T ss_pred HHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHHhH
Confidence 455665554 999999999999999999999999999874 4556666666666665443
No 132
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=30.85 E-value=25 Score=34.55 Aligned_cols=47 Identities=32% Similarity=0.454 Sum_probs=31.3
Q ss_pred ccccChHHHHHHHHHHHhcCCCCCCcHHHH-----------------hhcCCCCCCHHHHhhccC
Q 045919 230 RIVWTSELHLKFIEAVSSLGDIKARPKLIL-----------------QKMNVPGLTQRQVASHLQ 277 (277)
Q Consensus 230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il-----------------~~m~v~~lt~~~v~shlq 277 (277)
.=+|+++.-+-|.+|+...-. .-+-|-|| +|--=.-=||.+|.||.|
T Consensus 76 egvWSpdIEqsFqEALaiypp-cGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQ 139 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYPP-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 139 (455)
T ss_pred ccccChhHHHHHHHHHhhcCC-CCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 348999999999999987641 11122222 222225568899999987
No 133
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.74 E-value=2.6e+02 Score=25.13 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=37.9
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHc-CCcEEEe------CCCCHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVE-GACFFLE------KPISFDDLKYVW 62 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~-GA~dyL~------KPis~eeL~~~L 62 (277)
+++++.+.+. .+|||.--.-.+.+.+.+++.. |+++.+. .-++..+++..+
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~ 244 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYL 244 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHH
Confidence 6777887665 8999988888888888888874 9988776 345556655444
No 134
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=29.35 E-value=2.5e+02 Score=25.28 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=38.1
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcC-CcEEEe------CCCCHHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEG-ACFFLE------KPISFDDLKYVWQ 63 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~G-A~dyL~------KPis~eeL~~~Lq 63 (277)
+++++.+++. .+|||..-+-.+.+.+.+++..| +++.+. .-++..+++..+.
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 5777887765 89999988889999999999888 888544 3455555544443
No 135
>PRK07695 transcriptional regulator TenI; Provisional
Probab=29.33 E-value=2.2e+02 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=30.4
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFL 49 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL 49 (277)
|++.++.+... .+||+.+.+- +...+..++..|++++.
T Consensus 137 g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 137 GLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIA 175 (201)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 57778877654 8999987766 77888899999999873
No 136
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.68 E-value=3e+02 Score=24.52 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=37.2
Q ss_pred ccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHH
Q 045919 2 ANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDL 58 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL 58 (277)
+.+.|..-+.++.++.+++. .--+|-.-.--+.+.+..++.+||..++..-++++.+
T Consensus 33 iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi 90 (201)
T PRK06015 33 IEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELL 90 (201)
T ss_pred EEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 34556666788888888754 2223334455677889999999998655544555433
No 137
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=28.58 E-value=39 Score=25.41 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred ccChHHHHHHHHHHHhc---C-C-CCCCc-----HHHHhhcCC---CCCCHHHHhhcc
Q 045919 232 VWTSELHLKFIEAVSSL---G-D-IKARP-----KLILQKMNV---PGLTQRQVASHL 276 (277)
Q Consensus 232 ~Wt~~lh~~Fv~av~~l---g-~-~~a~p-----k~il~~m~v---~~lt~~~v~shl 276 (277)
.||++..+-||+.+-.. | . ..... ..|.+.|+- -.+|..||++|+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~ 58 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKW 58 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 59999999998887443 4 2 12333 345555554 457889999886
No 138
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.40 E-value=2.9e+02 Score=24.72 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=37.4
Q ss_pred cccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 045919 3 NVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKY 60 (277)
Q Consensus 3 Dl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~ 60 (277)
.+.+-.-.+++.++.+++. .--+|..-.-.+......++.+||+..+..-+++ ++..
T Consensus 45 Eitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~-~vi~ 102 (212)
T PRK05718 45 EVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTP-PLLK 102 (212)
T ss_pred EEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCH-HHHH
Confidence 3445556788999988765 2223333344566888999999999766666666 4443
No 139
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.34 E-value=2.1e+02 Score=26.70 Aligned_cols=41 Identities=10% Similarity=0.036 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCC-CHHHHHHHHHcCCcEEEe
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRR-NEIFSWRALVEGACFFLE 50 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~-~~~~v~~al~~GA~dyL~ 50 (277)
=+++.++.|++. .+|++++-+.+ ..+.+.+++..|++.+=.
T Consensus 187 l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 187 LRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINV 229 (281)
T ss_pred cCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEE
Confidence 378899998866 89999887443 566788899999998755
No 140
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=26.15 E-value=1.7e+02 Score=27.08 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=38.5
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcC-CcE------EEeCCCCHHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEG-ACF------FLEKPISFDDLKYVWQ 63 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~G-A~d------yL~KPis~eeL~~~Lq 63 (277)
+++++.++.. .+|||.-.+....+...+++..| |+. |-..-++..+++..+.
T Consensus 188 l~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL~ 247 (256)
T COG0107 188 LELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYLA 247 (256)
T ss_pred HHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHHH
Confidence 4677777766 99999999999999999999877 544 3344566666665543
No 141
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=25.64 E-value=1.7e+02 Score=25.61 Aligned_cols=39 Identities=15% Similarity=-0.045 Sum_probs=32.1
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcC-CcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEG-ACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~G-A~dyL~ 50 (277)
+++++.+.+. .+|||.-.+-.+.+.+..++..| |++++.
T Consensus 179 ~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 179 VEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 6778887665 89999888888888888999888 888876
No 142
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.04 E-value=2e+02 Score=27.07 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
..+.++.+++.. ++|||+--+-.+...+..++..||+++..=
T Consensus 148 ~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 148 TTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred cHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 357888888765 899998888888888999999999988763
No 143
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=25.00 E-value=3.2e+02 Score=25.02 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=41.5
Q ss_pred ccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHH
Q 045919 2 ANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQH 64 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~ 64 (277)
+|+.-..++--++...++.. .++.|+=....+...+.+++..||.+++..-+ +.++...+++.
T Consensus 46 iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 46 LDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred EccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 45555556655555555432 56666655667888999999999999987544 45555555543
No 144
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.96 E-value=1.9e+02 Score=26.08 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+++++.+.+. .+|||+-.+-.+.+.+..++..|++..+.
T Consensus 181 ~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 181 FELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 6777887655 89999888888899999999999999887
No 145
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.83 E-value=3e+02 Score=25.66 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=38.8
Q ss_pred HHHHHHHHcCC-cEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 13 SFVRVLVKEEI-PIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 13 eLL~~Ire~~i-PVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
++++.++..-. ...++....+.+.+..++.+||+-.+.-.+++++|..++..+
T Consensus 170 ~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 170 EFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 44555554322 133444556788899999999999999999999999998753
No 146
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.28 E-value=94 Score=25.92 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=26.5
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHH
Q 045919 26 ILMSSRRNEIFSWRALVEGACFFLEKPISFDD 57 (277)
Q Consensus 26 IllSs~~~~~~v~~al~~GA~dyL~KPis~ee 57 (277)
++.|+.-++..+.+|+..|||+.|+--....+
T Consensus 35 v~CsGrvn~~fvl~Al~~GaDGV~v~GC~~ge 66 (132)
T COG1908 35 VMCSGRVNPEFVLKALRKGADGVLVAGCKIGE 66 (132)
T ss_pred eeccCccCHHHHHHHHHcCCCeEEEecccccc
Confidence 46788889999999999999999987655444
No 147
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=23.87 E-value=3e+02 Score=24.89 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=37.3
Q ss_pred HHHHHHHHHHc-CCcEEEEecCC--C----HHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRR--N----EIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~--~----~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~ 68 (277)
+.+.++.+... .+||+++.+.. + ...+..++.+||.++.. ..-++.+....+..++..
T Consensus 180 ~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~ 249 (258)
T TIGR01949 180 DIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHE 249 (258)
T ss_pred CHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhC
Confidence 56777777654 89998765544 2 44566777999997643 444566666666655543
No 148
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=23.42 E-value=4e+02 Score=24.57 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe--CCCCHHHHHHHHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE--KPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~--KPis~eeL~~~Lq~vlr~~ 69 (277)
++.++.++.. .+||+.----.++..+.++...||+..|. .-++.++|...+..+...-
T Consensus 91 ~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lG 151 (247)
T PRK13957 91 LEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLG 151 (247)
T ss_pred HHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcC
Confidence 5777777766 89999766667788889999999999865 4566667777666655443
No 149
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=23.33 E-value=3.1e+02 Score=23.54 Aligned_cols=53 Identities=23% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 12 LSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 12 ~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
.++++.+++. ..+.|.+ ...+.+.+.+++.+|++..+.--++++++..++..+
T Consensus 67 ~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l 121 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHH
Confidence 3455666654 3332333 344577888999999999999999999999998877
No 150
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=22.99 E-value=3.1e+02 Score=23.27 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHc--CCcEEEE--ecCCCHHHHHHHHHcCCcEEEeCCCC
Q 045919 10 DSLSFVRVLVKE--EIPIILM--SSRRNEIFSWRALVEGACFFLEKPIS 54 (277)
Q Consensus 10 dG~eLL~~Ire~--~iPVIll--Ss~~~~~~v~~al~~GA~dyL~KPis 54 (277)
.|+++++.+++. ++|+++. ..+........+..+||+.++.....
T Consensus 39 ~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~ 87 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA 87 (202)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC
Confidence 357888888764 7888763 33333344577889999988876544
No 151
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=22.82 E-value=4.4e+02 Score=22.95 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=26.7
Q ss_pred HHHHHHHHHHc-CCcEEEEec----------CCCHHHHHHHHHcCCcEEE
Q 045919 11 SLSFVRVLVKE-EIPIILMSS----------RRNEIFSWRALVEGACFFL 49 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs----------~~~~~~v~~al~~GA~dyL 49 (277)
+++.++.++.. .+|+|.++. ......+..+..+||+..+
T Consensus 44 ~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~ 93 (221)
T PRK01130 44 GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIA 93 (221)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEE
Confidence 46777887765 899985543 1224567889999999444
No 152
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=22.82 E-value=3.5e+02 Score=25.84 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=43.8
Q ss_pred HHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcE------EEeC-CCCHHHHHHHHHHHHHHHh
Q 045919 12 LSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACF------FLEK-PISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 12 ~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~d------yL~K-Pis~eeL~~~Lq~vlr~~~ 70 (277)
+.+++++.+. ++|||-+.+-.+...+.+-+.+||.. ++.+ |.-..++..-+.+.++...
T Consensus 228 l~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g 296 (310)
T COG0167 228 LRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKG 296 (310)
T ss_pred HHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcC
Confidence 4555665544 69999999999999999999999974 5666 7767777777766666544
No 153
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.81 E-value=4.5e+02 Score=23.40 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=35.4
Q ss_pred ccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHH
Q 045919 2 ANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFD 56 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~e 56 (277)
+.+.|..-+.++.++.+++. .--+|-.-.--+.+.+..++.+||...+..-++++
T Consensus 37 iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~ 92 (204)
T TIGR01182 37 LEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPE 92 (204)
T ss_pred EEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 34455556788888888765 21223344456778889999999986655445443
No 154
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=22.67 E-value=3e+02 Score=25.54 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=41.3
Q ss_pred ccccCCCCCHHHHHHHHHH---cCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCC-HHHHHHHHHH
Q 045919 2 ANVDISNIDSLSFVRVLVK---EEIPIILMSSRRNEIFSWRALVEGACFFLEKPIS-FDDLKYVWQH 64 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire---~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis-~eeL~~~Lq~ 64 (277)
+|+.-...+--++...++. ..++.++=....+...+.+++..||.+++..-+. .++...+++.
T Consensus 45 iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 45 IDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred EccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 4555555555555555543 3565566566778889999999999999886554 4555554444
No 155
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=22.54 E-value=1.4e+02 Score=30.91 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=32.9
Q ss_pred HHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 045919 14 FVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKP 52 (277)
Q Consensus 14 LL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KP 52 (277)
-..++|++.+..||++++.......-+-++|+++|+.-.
T Consensus 455 Rf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAea 493 (681)
T COG2216 455 RFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAEA 493 (681)
T ss_pred HHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhhcC
Confidence 345577789999999999988888888899999999753
No 156
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=22.43 E-value=2.2e+02 Score=24.78 Aligned_cols=39 Identities=18% Similarity=0.006 Sum_probs=31.8
Q ss_pred HHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
++++..++.. .+|||...+-...+.+.+++..||++++.
T Consensus 159 ~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 159 LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 4666776543 67999888888889999999999999875
No 157
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.43 E-value=4.2e+02 Score=24.20 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC--CCCHHHHHHHHHHHHH
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK--PISFDDLKYVWQHSYI 67 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K--Pis~eeL~~~Lq~vlr 67 (277)
.+++.++.++.. ++||+.----.++..+..+..+||+.+++- .++...|...+..+..
T Consensus 98 g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~ 158 (260)
T PRK00278 98 GSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHS 158 (260)
T ss_pred CCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHH
Confidence 347778888765 999996333344556888999999998764 2345566666665544
No 158
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.33 E-value=3.7e+02 Score=23.68 Aligned_cols=39 Identities=18% Similarity=-0.005 Sum_probs=30.4
Q ss_pred HHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 13 SFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 13 eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
++++.++.. .+|||.-.+-...+.+..++..|+++++.=
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 344556653 689998888888888999999999999763
No 159
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=22.30 E-value=4.1e+02 Score=21.23 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 11 G~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|..+++.+ ...+|||+.- . ....+.+..+..+|+..|.+.++|..++..++...
T Consensus 106 ~~~~~Ea~-~~g~pvI~~~-~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 106 GLSLLEAM-ACGCPVIASD-I---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp -HHHHHHH-HTT-EEEEES-S---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cccccccc-ccccceeecc-c---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 34444433 2377877533 2 23345677788999999999999999999998776
No 160
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.23 E-value=3.9e+02 Score=25.16 Aligned_cols=38 Identities=16% Similarity=-0.011 Sum_probs=31.2
Q ss_pred EecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 28 MSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 28 lSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
-....+.+.+.+++.+||+.++.-++++++|..++..+
T Consensus 200 ~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 200 EVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred EEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 33445677788999999999999999999999988743
No 161
>PLN02591 tryptophan synthase
Probab=21.94 E-value=2.1e+02 Score=26.28 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=34.0
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKP 52 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KP 52 (277)
.++++.+++. ++||++=.+-.+.+.+......||+++++-.
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 4567777776 9999987777888899999999999999864
No 162
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=21.58 E-value=3.8e+02 Score=24.34 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=42.2
Q ss_pred ccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEe-CCCCHHHHHHHHHHHH
Q 045919 2 ANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLE-KPISFDDLKYVWQHSY 66 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~-KPis~eeL~~~Lq~vl 66 (277)
+|+.-...+.-++...++.. .+.+++=....+...+.+++..||++++. +--+++++..++..+.
T Consensus 39 iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 39 IDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred EeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 45555555665665555432 44555444556677889999999998865 5667787776666543
No 163
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=20.96 E-value=3.7e+02 Score=26.29 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHHHHh
Q 045919 9 IDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFL-----EKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 9 mdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL-----~KPis~eeL~~~Lq~vlr~~~ 70 (277)
..+++.++.++.. .+||++..+- ..+.+..++.+||+.++ .+.-++.+....++..+++..
T Consensus 148 ~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~~ 214 (430)
T PRK07028 148 KDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSGK 214 (430)
T ss_pred CChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhccC
Confidence 3566788887754 7898876654 56778889999999764 455566666666666665433
No 164
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=20.95 E-value=89 Score=30.95 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=40.2
Q ss_pred cccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHH---HcCC--------cEEEeCCCCHHHHHHHHHH
Q 045919 3 NVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRAL---VEGA--------CFFLEKPISFDDLKYVWQH 64 (277)
Q Consensus 3 Dl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al---~~GA--------~dyL~KPis~eeL~~~Lq~ 64 (277)
++||-|+..|.|+.+..+. -.|||+|++.-....+...- -+|. .-.=.+|++.+++..+|+.
T Consensus 299 EvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~i 372 (450)
T COG1224 299 EVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372 (450)
T ss_pred chhhhhHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHH
Confidence 5789999999999997666 78999988754332211000 0111 1122479999999888764
No 165
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.86 E-value=2.4e+02 Score=25.63 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=31.6
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHH-HcCCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRAL-VEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al-~~GA~dyL~ 50 (277)
+++++.+.+. .+|||.-.+-.+.+.+..++ ..|+++.+.
T Consensus 185 ~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 185 LELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 5777777665 89999888888888898888 789987654
No 166
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.83 E-value=2.7e+02 Score=27.24 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=53.8
Q ss_pred cccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhhhhhh
Q 045919 3 NVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQL 76 (277)
Q Consensus 3 Dl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~~~~~ 76 (277)
-+..|++...+.+..|++. .+|+|.=- +-+...+..++..|++..=.-|=+...+...+..++...+......
T Consensus 60 Rvav~~~~~a~al~~I~~~~~iPlvADI-HFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipI 133 (360)
T PRK00366 60 RVAVPDMEAAAALPEIKKQLPVPLVADI-HFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPI 133 (360)
T ss_pred EEccCCHHHHHhHHHHHHcCCCCEEEec-CCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCE
Confidence 3456788888888888776 88877533 4567788899999999999999887666667777776665544433
No 167
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.08 E-value=3.5e+02 Score=24.67 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=41.3
Q ss_pred ccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHH
Q 045919 2 ANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQH 64 (277)
Q Consensus 2 lDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~ 64 (277)
+|..-..++--++...++.. .++.|+=....+...+.+++..||.+++..-+ +.++...+++.
T Consensus 39 iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 39 LDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred EecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 45555556655555555433 55555555667888999999999999987544 45555555543
No 168
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.05 E-value=2.5e+02 Score=24.90 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=31.2
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHc-CCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVE-GACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~-GA~dyL~ 50 (277)
+++++.+.+. .+|||+.-.-.+.+.+..++.. |++.++.
T Consensus 182 ~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 182 LELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 6777777655 8999988878888888888886 8887765
No 169
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=20.03 E-value=2.6e+02 Score=24.93 Aligned_cols=39 Identities=23% Similarity=0.110 Sum_probs=33.2
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+++++.+.+. .+||++-.+-.+.+.+..++..|++..+.
T Consensus 178 ~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 178 LELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5677777655 89999988889999999999999998876
Done!